Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 215 of 295
Found at i:68523085 original size:28 final size:28
Alignment explanation
Indices: 68523053--68523123 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 28
68523043 GTCTCTAGAT
*
68523053 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATATTTTGTGGCAGGGCCACCAGA
**
68523081 ACAG--ATTACGTGGCAGGGCCACCAGA
1 ACAGATATTTTGTGGCAGGGCCACCAGA
**
68523107 ACAGATAAGTTGTGGCA
1 ACAGATATTTTGTGGCA
68523124 TAGCCACTAG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
26 23 0.68
28 11 0.32
ACGTcount: A:0.31, C:0.21, G:0.28, T:0.20
Consensus pattern (28 bp):
ACAGATATTTTGTGGCAGGGCCACCAGA
Found at i:68523286 original size:28 final size:28
Alignment explanation
Indices: 68523239--68523303 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
68523229 AAATTAACCC
*
68523239 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
68523267 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
68523295 TAGGGGTAT
1 TAGGGGTAT
68523304 TCTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.08, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:68530350 original size:100 final size:100
Alignment explanation
Indices: 68530162--68530421 Score: 274
Period size: 100 Copynumber: 2.6 Consensus size: 100
68530152 GCTAAATGAC
* * * *
68530162 CTTGTATATTCAGCCA-CATAGGTATGTACATATGTGATGTTGTATTGGATCTTGAATATTCAGC
1 CTTGTATATTCGGCCATC-TAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCAGC
* * * *
68530226 CATGAAGGTATGTACAAATTTGATATTATATTTGAAT
65 CATGAAGGTAAGCACAAATGTGATATTAAATTTG-AT
* * * * *
68530263 -TTGTATATTCGGCCATCTAAGTAAGTACATATGTGATGTTAAATTTGATCTTGCATATTCGGCT
1 CTTGTATATTCGGCCATCTAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCAGCC
* *
68530327 AT-ATAGTTAAGCACATATGTGATATTAAATTTGAT
66 ATGA-AGGTAAGCACAAATGTGATATTAAATTTGAT
* * * * * * *
68530362 CTTGCATATTCGGCCATATTGGTAAGCACATATGTGCTATTATATTTGATCTTGTATATT
1 CTTGTATATTCGGCCATCTAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATT
68530422 TGGCCAAATG
Statistics
Matches: 132, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
99 3 0.02
100 128 0.97
101 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.41
Consensus pattern (100 bp):
CTTGTATATTCGGCCATCTAGGTAAGTACATATGTGATGTTATATTTGATCTTGAATATTCAGCC
ATGAAGGTAAGCACAAATGTGATATTAAATTTGAT
Found at i:68530427 original size:50 final size:50
Alignment explanation
Indices: 68530162--68530427 Score: 248
Period size: 50 Copynumber: 5.3 Consensus size: 50
68530152 GCTAAATGAC
* * * * * * ** *
68530162 CTTGTATATTCAGCCACATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * * * * * *
68530212 CTTGAATATTCAGCCATGA-AGGTATGTACAAATTTGATATTATATTTGAAT
1 CTTGCATATTCGGCCAT-ATAGGTAAGCACATATGTGATATTAAATTTG-AT
* * * * *
68530263 -TTGTATATTCGGCCATCTAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
68530312 CTTGCATATTCGGCTATATAGTTAAGCACATATGTGATATTAAATTTGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* * *
68530362 CTTGCATATTCGGCCATATTGGTAAGCACATATGTGCTATTATATTTGAT
1 CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
* *
68530412 CTTGTATATTTGGCCA
1 CTTGCATATTCGGCCA
68530428 AATGAGTGAT
Statistics
Matches: 182, Mismatches: 30, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
49 2 0.01
50 177 0.97
51 3 0.02
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (50 bp):
CTTGCATATTCGGCCATATAGGTAAGCACATATGTGATATTAAATTTGAT
Found at i:68535646 original size:129 final size:129
Alignment explanation
Indices: 68535416--68535673 Score: 464
Period size: 129 Copynumber: 2.0 Consensus size: 129
68535406 GCTAAATTGT
* *
68535416 ATGTTTCTCAGATTGTGAGACTACACGGAGTACCTATTTCTACTGTGTCAGATAGAGATTCGAAA
1 ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTACTGTGTCAGATAGAGATTCGAAA
68535481 TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
66 TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
* *
68535545 ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTATTGTGTCAGATAGAGA-TCTGAC
1 ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTACTGTGTCAGATAGAGATTC-GAA
68535609 ATTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
65 ATTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
68535674 CTTTTCATCC
Statistics
Matches: 124, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
128 2 0.02
129 122 0.98
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.33
Consensus pattern (129 bp):
ATGTTTCTCAAATTGTGAGACTACACAGAGTACCTATTTCTACTGTGTCAGATAGAGATTCGAAA
TTTACATCACAGTTTTGGAAGAAACTCGAAGATGCATTAGGTACTAAACTGAATTTTAGTACTA
Found at i:68538132 original size:50 final size:50
Alignment explanation
Indices: 68537985--68538250 Score: 259
Period size: 50 Copynumber: 5.3 Consensus size: 50
68537975 GCTAAATGAC
* ** * * * *
68537985 CTTGTATATTTGGCCGCATAGGTATGTACATATGTGATGTTGTATTGGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * * *
68538035 CTTGAATATTCGACCATGA-AGGTATGTACAAATGAGATATTATATTTGAAT
1 CTTGTATATTCGGCCAT-ATAGGTAAGTACATATGTGATATTATATTTG-AT
* * *
68538086 -TTGTATATTCGGCCATATAAGTAAGTACATATGTGATGTTAAATTTGAT
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * *
68538135 CTT-TCATATTCGTCTATATAGGTAAGCACATATGTGATATTAAATTTGAT
1 CTTGT-ATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
* * * * *
68538185 CTTGCATATTCGGCGATATAGGTAAGCACATATGTGCTATTATATTTGAC
1 CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
*
68538235 CTTGTATATTTGGCCA
1 CTTGTATATTCGGCCA
68538251 AATGAGTGAT
Statistics
Matches: 178, Mismatches: 32, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
49 4 0.02
50 171 0.96
51 3 0.02
ACGTcount: A:0.30, C:0.12, G:0.19, T:0.39
Consensus pattern (50 bp):
CTTGTATATTCGGCCATATAGGTAAGTACATATGTGATATTATATTTGAT
Found at i:68544505 original size:47 final size:47
Alignment explanation
Indices: 68544424--68544674 Score: 328
Period size: 47 Copynumber: 5.4 Consensus size: 47
68544414 TAATTGAATA
* * *
68544424 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGAG-ATAAGGCCGAATGGCCAATGTGATG
** *
68544472 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
*
68544519 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
68544566 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
68544613 AATGTGAGCATGTGTATGTGAGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
68544660 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
68544675 AATTGTGATA
Statistics
Matches: 182, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.01
47 157 0.86
48 17 0.09
49 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:68544861 original size:37 final size:37
Alignment explanation
Indices: 68544805--68544884 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
68544795 CCGGACTCTA
* * *
68544805 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
68544842 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
68544879 AAGACT
1 AAGACT
68544885 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:68568335 original size:55 final size:53
Alignment explanation
Indices: 68568227--68568473 Score: 204
Period size: 55 Copynumber: 4.7 Consensus size: 53
68568217 ATTAGGGTTT
* * * * * *
68568227 AAGGATACAACGTAAGACCATGCCAAGGCAAGGCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATAA-G-TTCATAAGGC
*
68568282 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGGC
* * *
68568337 AAAGG-T-CCTATGTAAGACCATGCCAAGGCATGGCATT-AGTGAGTTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGTCAAGACATGGCATTGA-TAAGTTCATAAGGC
* * * *
68568390 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCA-G-
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
** * *
68568439 AAGGATACCACATAAGACCATGCCAAGTCATGGCA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCA
68568474 ATGGTAAGGT
Statistics
Matches: 160, Mismatches: 23, Indels: 24
0.77 0.11 0.12
Matches are distributed among these distances:
49 30 0.19
50 1 0.01
51 2 0.01
52 6 0.04
53 39 0.24
54 12 0.08
55 66 0.41
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGC
Found at i:68568412 original size:108 final size:110
Alignment explanation
Indices: 68568238--68568434 Score: 301
Period size: 108 Copynumber: 1.8 Consensus size: 110
68568228 AGGATACAAC
* *
68568238 GTAAGACCATGCCAAGGCAAGGCAATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGACCAT
1 GTAAGACCATGCCAAGGCAAGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
*
68568303 GTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCTAT
66 GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCTAT
* *
68568348 GTAAGACCATGCCAAGGCATGGC-ATTAGTGA-G-TTCATAAGGCAAGGATACCATGTAAGACCA
1 GTAAGACCATGCCAAGGCAAGGCAATTAGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACCA
* *
68568410 TGTCGAGACATGGCAATGGTAAGTT
65 TGTCAAGACATGGCAATGATAAGTT
68568435 TCAGAAGGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.61
109 6 0.08
110 22 0.28
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.23
Consensus pattern (110 bp):
GTAAGACCATGCCAAGGCAAGGCAATTAGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCTAT
Found at i:68585326 original size:28 final size:28
Alignment explanation
Indices: 68585263--68585385 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
68585253 ATATTAAGTC
*
68585263 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68585290 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68585318 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68585346 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68585375 CGCACACTTAG
1 CGCACACTTAG
68585386 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 21 0.25
28 48 0.56
29 16 0.19
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68588595 original size:25 final size:25
Alignment explanation
Indices: 68588566--68588643 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
68588556 GAATGGCCAA
68588566 TGTGATGAATGTGAACATGCATATG
1 TGTGATGAATGTGAACATGCATATG
* *
68588591 TGTGAT-AAGGTCG-A-ATGGC-CA-G
1 TGTGATGAATGT-GAACAT-GCATATG
* *
68588613 TGTGATGAATATGAACATGCATATA
1 TGTGATGAATGTGAACATGCATATG
68588638 TGTGAT
1 TGTGAT
68588644 AAGGCCGAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 8 0.20
23 9 0.22
24 10 0.25
25 13 0.32
ACGTcount: A:0.32, C:0.09, G:0.28, T:0.31
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATATG
Found at i:68588806 original size:22 final size:22
Alignment explanation
Indices: 68588731--68588806 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
68588721 ACATGCATAT
*
68588731 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
68588753 ATGTGATGAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
68588777 TATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
68588800 ATGTGAT
1 ATGTGAT
68588807 GAACGTGAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:68588844 original size:47 final size:47
Alignment explanation
Indices: 68588518--68588829 Score: 473
Period size: 47 Copynumber: 6.6 Consensus size: 47
68588508 TTAGGATTTT
** * *
68588518 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68588565 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68588612 GTGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
68588659 ATGTGATGAATGTGAGCATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68588706 ATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
68588753 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
68588800 ATGTGATGAACGTGAA-AGTGTATATATGTG
1 ATGTGATGAATGTGAACA-TGCATATATGTG
68588830 GCGAAGCCGA
Statistics
Matches: 241, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
46 1 0.00
47 240 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:68588876 original size:46 final size:46
Alignment explanation
Indices: 68588823--68588911 Score: 124
Period size: 46 Copynumber: 1.9 Consensus size: 46
68588813 GAAAGTGTAT
* * *
68588823 ATATGTGGCGAAGCCGAATGGCTAATGCGAAACGTGTATGAGACGG
1 ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGACGG
* * *
68588869 ATATGTGGTAAAGCCAAATGGCTAATGTGAGACATGTATGAGA
1 ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGA
68588912 TGTATATATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.34, C:0.12, G:0.31, T:0.22
Consensus pattern (46 bp):
ATATGTGGCAAAGCCAAATGGCTAATGCGAAACATGTATGAGACGG
Found at i:68590901 original size:42 final size:43
Alignment explanation
Indices: 68590788--68590911 Score: 146
Period size: 43 Copynumber: 2.9 Consensus size: 43
68590778 AGTACCGTAC
68590788 CGATGCC-ATATCCCAGATATGGTCTTACATGTAATCTCATAT
1 CGATGCCAATATCCCAGATATGGTCTTACATGTAATCTCATAT
* * * *
68590830 CGATGCCAATAGCCCAGCTATGGTCTTACATG-AAGTTTCTTAT
1 CGATGCCAATATCCCAGATATGGTCTTACATGTAA-TCTCATAT
* * **
68590873 CGATG-TAGTATCCCAGATATGGTCTTACACATAATCTCA
1 CGATGCCAATATCCCAGATATGGTCTTACATGTAATCTCA
68590912 GTAACCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (43 bp):
CGATGCCAATATCCCAGATATGGTCTTACATGTAATCTCATAT
Found at i:68593453 original size:27 final size:27
Alignment explanation
Indices: 68593425--68593556 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
68593415 TATCACACAG
* ** *
68593425 GGGCAAAACAGTCAATTTACCATGTAG
1 GGGCAAAACAGTCATTTTACCACATAA
*** *
68593452 GGGCATTTCAGTCATTTTACCATATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
68593479 GGGCAAAAAAATCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
*
68593506 GGGCAAAATAGTCATTTTACCACATAA
1 GGGCAAAACAGTCATTTTACCACATAA
* *
68593533 GGGAAAAATAGTCATTTTACCACA
1 GGGCAAAACAGTCATTTTACCACA
68593557 AAGAGGGCTT
Statistics
Matches: 90, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (27 bp):
GGGCAAAACAGTCATTTTACCACATAA
Found at i:68594518 original size:23 final size:21
Alignment explanation
Indices: 68594487--68594528 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
68594477 GCAGAGGAAG
68594487 ATTCAGCTACCAGATACTAGGGT
1 ATTCAGCTACCA-ATA-TAGGGT
*
68594510 ATTCGGCTACCAATATAGG
1 ATTCAGCTACCAATATAGG
68594529 AGGGAAGCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.26
Consensus pattern (21 bp):
ATTCAGCTACCAATATAGGGT
Found at i:68596207 original size:46 final size:45
Alignment explanation
Indices: 68596151--68596313 Score: 179
Period size: 46 Copynumber: 3.5 Consensus size: 45
68596141 ATAGCTGATA
68596151 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAGG-CGATG
* * * *
68596197 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCTGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGC-GATG
* * *
68596243 TCAT-TCCCAGACATGGTCTTACACTGCCTCTCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAGG-CGATG
68596290 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
68596314 AGCACACAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
45 1 0.01
46 61 0.62
47 35 0.35
48 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.18, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAGGCGATG
Found at i:68596274 original size:47 final size:45
Alignment explanation
Indices: 68596106--68596313 Score: 169
Period size: 46 Copynumber: 4.5 Consensus size: 45
68596096 GTGCCAATTC
* * * *
68596106 CATGTCCCAAACATGGTCTTACACTGACAC-C-TTTCATAGCT-GATA
1 CATGTCCCAGACAT-GTCTTACACTG-CTCTCATCTCA-AGCTCGATG
* *
68596151 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAGGTCGATG
1 CATGTCCCAGACATGTCTTACACT-GCTCT-CATCTCAAGCTCGATG
*
68596197 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCT-GATG
1 CATGTCCCAGACATGTCTTACACT-GCTCTCATCTCAA-GCTCGATG
* ***
68596243 TCAT-TCCCAGACATGGTCTTACACTGCCTCTCATAATGTGGC-CGATG
1 -CATGTCCCAGACAT-GTCTTACACTG-CTCTCAT-CTCAAGCTCGATG
68596290 CATGTCCCAGACATGTCTTACACT
1 CATGTCCCAGACATGTCTTACACT
68596314 AGCACACAAA
Statistics
Matches: 135, Mismatches: 15, Indels: 25
0.77 0.09 0.14
Matches are distributed among these distances:
44 11 0.08
45 18 0.13
46 67 0.50
47 38 0.28
48 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTGCTCTCATCTCAAGCTCGATG
Found at i:68597046 original size:13 final size:13
Alignment explanation
Indices: 68597030--68597059 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
68597020 TACAAAAATT
68597030 ATCAAGAAAAGTC
1 ATCAAGAAAAGTC
68597043 ATC-AGAAAAGTC
1 ATCAAGAAAAGTC
68597055 ATCAA
1 ATCAA
68597060 AACCACTTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.53, C:0.17, G:0.13, T:0.17
Consensus pattern (13 bp):
ATCAAGAAAAGTC
Found at i:68601713 original size:34 final size:34
Alignment explanation
Indices: 68601675--68601740 Score: 98
Period size: 34 Copynumber: 1.9 Consensus size: 34
68601665 TTTCAGTTAG
*
68601675 GGCCTTAGCCCAAT-ACAGTAACAGTATCAGTATT
1 GGCCTTAGCCC-ATGACAGTAACAGTAGCAGTATT
*
68601709 GGCCTTAGCCCATGTCAGTAACAGTAGCAGTA
1 GGCCTTAGCCCATGACAGTAACAGTAGCAGTA
68601741 CAAATATGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 2 0.07
34 27 0.93
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (34 bp):
GGCCTTAGCCCATGACAGTAACAGTAGCAGTATT
Found at i:68603027 original size:21 final size:21
Alignment explanation
Indices: 68603001--68603043 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
68602991 AGCTCACATA
68603001 TAAACTTGGAGTACATACCTG
1 TAAACTTGGAGTACATACCTG
68603022 TAAACTTGGAGTACATACCTG
1 TAAACTTGGAGTACATACCTG
68603043 T
1 T
68603044 TTAACCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (21 bp):
TAAACTTGGAGTACATACCTG
Found at i:68603199 original size:37 final size:37
Alignment explanation
Indices: 68603145--68603245 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
68603135 GCTCAGACGA
* *
68603145 AATCTCCACACGAAGTCATTGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
68603182 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
68603219 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
68603246 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:68603353 original size:78 final size:78
Alignment explanation
Indices: 68603253--68603420 Score: 327
Period size: 78 Copynumber: 2.2 Consensus size: 78
68603243 CTTTAGAGCT
*
68603253 CGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTTATAATATTCTCGCATAAAGCCTG
1 CGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCATAAAGCCTG
68603318 CGGGGTTTTAACC
66 CGGGGTTTTAACC
68603331 CGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCATAAAGCCTG
1 CGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCATAAAGCCTG
68603396 CGGGGTTTTAACC
66 CGGGGTTTTAACC
68603409 CGGATATAGTAC
1 CGGATATAGTAC
68603421 TGACACAAAT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 89 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (78 bp):
CGGATATAGTACGAGCACGAAGCTTACGGACATTAATCAGTGATAATATTCTCGCATAAAGCCTG
CGGGGTTTTAACC
Found at i:68603663 original size:49 final size:47
Alignment explanation
Indices: 68603442--68604246 Score: 1205
Period size: 47 Copynumber: 16.7 Consensus size: 47
68603432 CCCTTCGCGA
* * * * * *
68603442 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68603489 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68603536 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68603583 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68603630 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68603679 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68603726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68603773 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
*
68603822 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68603869 CTTATCACATATATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68603920 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68603969 CTTCTCACATATATACACTTTCACATTCATCACATCGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68604016 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68604065 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68604114 CTTATGTCACATATATACACTTTCACATTCATCACATCGGCTATTCGGC
1 CTTA--TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68604163 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68604212 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
68604247 AGAATCCTAA
Statistics
Matches: 702, Mismatches: 42, Indels: 28
0.91 0.05 0.04
Matches are distributed among these distances:
47 343 0.49
49 310 0.44
51 49 0.07
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68603681 original size:96 final size:94
Alignment explanation
Indices: 68603442--68604246 Score: 1205
Period size: 96 Copynumber: 8.4 Consensus size: 94
68603432 CCCTTCGCGA
* * * * * * * *
68603442 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68603507 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
68603536 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68603601 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
68603630 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
68603695 ACTTTCACATTCATCACATCGACTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
68603726 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGACTTATCACATATATAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--AC
* *
68603791 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
68603822 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC----ATATAT
*
68603887 ACACTTTCACATTCATCACTTCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68603920 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTCTCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
68603985 ACTTTCACATTCATCACATCGGCTATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
68604016 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
68604081 ACACTTTCACATTCATCACATCGGCTATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68604114 CTTATGTCACATATATACACTTTCACATTCATCACATCGGCTATTCGGCCTTATCACATATATAT
1 CTTA--TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
68604179 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
68604212 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
68604247 AGAATCCTAA
Statistics
Matches: 657, Mismatches: 40, Indels: 26
0.91 0.06 0.04
Matches are distributed among these distances:
94 143 0.22
96 292 0.44
98 169 0.26
100 53 0.08
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:68608081 original size:40 final size:40
Alignment explanation
Indices: 68608049--68608320 Score: 420
Period size: 40 Copynumber: 6.8 Consensus size: 40
68608039 CCAACATGAT
* * *
68608049 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
68608089 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
68608129 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
68608169 TGCTCCTT-GGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCT-CTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
68608209 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
68608249 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
68608289 TGCTCCTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
68608321 CTCAATTCTC
Statistics
Matches: 214, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 209 0.98
41 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:68609644 original size:37 final size:37
Alignment explanation
Indices: 68609590--68609690 Score: 184
Period size: 37 Copynumber: 2.7 Consensus size: 37
68609580 GCTCAGCCGA
*
68609590 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
68609627 AATCTCCACACGTAGTCATCGGGTCTTACCTGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
68609664 AATCTCCACACGTAGTCATCGGGTCTT
1 AATCTCCACACGTAGTCATCGGGTCTT
68609691 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:68609887 original size:47 final size:47
Alignment explanation
Indices: 68609809--68610560 Score: 1139
Period size: 47 Copynumber: 15.7 Consensus size: 47
68609799 CCCTTCGGGA
* * * * * *
68609809 CTTATCACATTTATACACTATT-ACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
* *
68609856 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68609903 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68609950 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68609997 CTTATAACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68610044 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68610091 CTTATAACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68610140 CTTATCACATATATACAGTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68610187 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68610234 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGC
* *
68610283 CTTATCACATATATGCACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68610330 CTTATCACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68610381 CTTATCACATATATATACTCTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
68610430 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT-AGGC
68610477 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
68610526 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
68610561 AGAATCCTAA
Statistics
Matches: 650, Mismatches: 42, Indels: 26
0.91 0.06 0.04
Matches are distributed among these distances:
46 2 0.00
47 420 0.65
48 1 0.00
49 185 0.28
51 42 0.06
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:68610142 original size:96 final size:94
Alignment explanation
Indices: 68609809--68610560 Score: 1139
Period size: 96 Copynumber: 7.9 Consensus size: 94
68609799 CCCTTCGGGA
* * * * * * * *
68609809 CTTATCACATTTATACACTATT-ACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACA
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
68609873 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
68609903 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
68609968 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
68609997 CTTATAACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
68610062 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
68610091 CTTATAACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
68610156 AGTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
68610187 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT--AC
* *
68610252 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
68610283 CTTATCACATATATGCACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACACATATATAT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CAC--ATATAT
68610348 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
68610381 CTTATCACATATATATACTCTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
68610446 ACTTTCACATTCATCACATCGGCTATTCA-GC
64 ACTTTCACATTCATCACATCGGCCATT-AGGC
68610477 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
68610542 ACTTTCACATTCATCACAT
64 ACTTTCACATTCATCACAT
68610561 AGAATCCTAA
Statistics
Matches: 607, Mismatches: 39, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
93 2 0.00
94 232 0.38
96 282 0.46
97 1 0.00
98 45 0.07
100 45 0.07
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:68610169 original size:143 final size:142
Alignment explanation
Indices: 68609809--68610560 Score: 1208
Period size: 143 Copynumber: 5.3 Consensus size: 142
68609799 CCCTTCGGGA
* * * * * *
68609809 CTTATCACATTTAT-ACACTATT-ACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATAACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
68609872 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
68609937 TCGGCCATTAGGC
130 TCGGCCATTAGGC
* * * *
68609950 CTTATCACATATAT-ACACTTTCACATTCATCACATCGGCTATTAGGCCTTATAACATATATACA
1 CTTATCACATATATAACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
68610014 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
68610079 CGGCCATTAGGC
131 CGGCCATTAGGC
*
68610091 CTTATAACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
68610156 AGTTTCACATTCATCACATCGGCTATTAGGCATTATCACATATATACACTTTCACATTCATCACA
65 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
68610221 TCGGCCATTAGGC
130 TCGGCCATTAGGC
*
68610234 CTTATCACATATATAGACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
* *
68610299 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACACATATATATACACTTTCACATTCAT
65 ACTTTCACATTCATCACATCGGCTATTAGGCCTTAT--CAC--ATATATACACTTTCACATTCAT
68610364 CACATCGGCCATTAGGC
126 CACATCGGCCATTAGGC
*
68610381 CTTATCACATATATATACTCTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATA-ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
68610446 ACTTTCACATTCATCACATCGGCTATTCA-GCCTTATCACATATATATACACTTTCACATTCATC
65 ACTTTCACATTCATCACATCGGCTATT-AGGCCTTATCAC--ATATATACACTTTCACATTCATC
68610510 ACATCGGCCATTAGGC
127 ACATCGGCCATTAGGC
68610526 CTTATCACATATAT-ACACTTTCACATTCATCACAT
1 CTTATCACATATATAACACTTTCACATTCATCACAT
68610561 AGAATCCTAA
Statistics
Matches: 573, Mismatches: 30, Indels: 14
0.93 0.05 0.02
Matches are distributed among these distances:
140 2 0.00
141 140 0.24
143 236 0.41
145 61 0.11
147 133 0.23
148 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATAACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACA
CTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:68618313 original size:15 final size:14
Alignment explanation
Indices: 68618277--68618331 Score: 65
Period size: 15 Copynumber: 3.8 Consensus size: 14
68618267 TCTATTGATC
68618277 GAGAAAAAGAAAAA
1 GAGAAAAAGAAAAA
*
68618291 GAGAAAAACAAAAA
1 GAGAAAAAGAAAAA
*
68618305 GAGTGAAAAGAAAAA
1 GAG-AAAAAGAAAAA
*
68618320 GAAAGAAAAGAA
1 GAGA-AAAAGAA
68618332 TGAGGAGAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
14 16 0.47
15 18 0.53
ACGTcount: A:0.75, C:0.02, G:0.22, T:0.02
Consensus pattern (14 bp):
GAGAAAAAGAAAAA
Found at i:68627596 original size:27 final size:26
Alignment explanation
Indices: 68627560--68627672 Score: 118
Period size: 27 Copynumber: 4.2 Consensus size: 26
68627550 CAGCATGGCG
* *
68627560 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
68627586 ACCAGATACAGATAATCGCGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
*
68627614 ACCAGAACAGATATATGTGGTAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
** * *
68627641 ACCAGATTAGATAATTGTGGCATAACC
1 ACCAGAACAGATAA-TGTGGCAGAGCC
68627668 ACCAG
1 ACCAG
68627673 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 50 0.68
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:68627670 original size:54 final size:54
Alignment explanation
Indices: 68627560--68627672 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
68627550 CAGCATGGCG
* *
68627560 ACCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGCGGCAGAGCC
1 ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGCGGCAGAACC
** * * * *
68627614 ACCAGAACAGATATATGTGGTAGAGCCACCAGAT-TAGATAATTGTGGCATAACC
1 ACCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGCGGCAGAACC
68627668 ACCAG
1 ACCAG
68627673 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
ACCAGAACAGATAATGTGACAGAGCCACCAGATACAGATAATCGCGGCAGAACC
Found at i:68630552 original size:47 final size:47
Alignment explanation
Indices: 68630489--68630804 Score: 458
Period size: 47 Copynumber: 6.7 Consensus size: 47
68630479 CCCTTCGGGA
* * *
68630489 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
68630536 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCAGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
68630583 CTTATCTCATATATTCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68630630 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68630677 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
68630724 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
68630771 CTTATCACATATATATACACT-TTCACATTCATCA
1 CTTATCAC--ATATATACA-TGTTCACATTCATCA
68630805 TCCATTTTAT
Statistics
Matches: 244, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
46 1 0.00
47 222 0.91
49 20 0.08
50 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:68630875 original size:49 final size:49
Alignment explanation
Indices: 68630820--68630969 Score: 277
Period size: 49 Copynumber: 3.1 Consensus size: 49
68630810 TTTATCACTT
68630820 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
*
68630869 ACATTCATCACATTGGCCATTAGGCCTTATCACATATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
68630918 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
68630965 ACATT
1 ACATT
68630970 TATTCAAATA
Statistics
Matches: 99, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
47 19 0.19
49 80 0.81
ACGTcount: A:0.31, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
Found at i:68630898 original size:123 final size:121
Alignment explanation
Indices: 68630699--68630927 Score: 379
Period size: 123 Copynumber: 1.9 Consensus size: 121
68630689 ATGCATGTTC
* *
68630699 ACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCC
1 ACATTCATCACATCGGCCATTAGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCC
*
68630764 ATTCGGCCTTATCACATATATATACACTTTCACATTCATCATCCATTTTATCACTT
66 ATTAGGCCTTATCACATATATATACACTTTCACATTCATCATCCATTTTATCACTT
* *
68630820 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACT-TTCACATTCATCACATTG
1 ACATTCATCACATCGGCCATTAGGCCTTATCAC--ACATACACA-TGTTCACATTCATCACATTG
68630884 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
63 GCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
68630928 CATCGGCCAT
Statistics
Matches: 100, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
121 31 0.31
123 68 0.68
124 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.34
Consensus pattern (121 bp):
ACATTCATCACATCGGCCATTAGGCCTTATCACACATACACATGTTCACATTCATCACATTGGCC
ATTAGGCCTTATCACATATATATACACTTTCACATTCATCATCCATTTTATCACTT
Found at i:68632363 original size:85 final size:85
Alignment explanation
Indices: 68632234--68632412 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
68632224 TATTTTATTG
* *
68632234 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTGTGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68632299 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
68632319 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
68632384 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
68632404 CCCATGCTC
1 CCCATGCTC
68632413 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.26, C:0.28, G:0.09, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:68639305 original size:28 final size:27
Alignment explanation
Indices: 68639250--68639361 Score: 122
Period size: 27 Copynumber: 4.1 Consensus size: 27
68639240 AGCATGGCTG
* *
68639250 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
68639276 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
68639304 CCAGA-ACAGATATATGTGGCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
* *
68639331 CCAGAT-CAGATAATTGTGGCATAACCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
68639358 CCAG
1 CCAG
68639362 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:68639342 original size:54 final size:54
Alignment explanation
Indices: 68639250--68639361 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
68639240 AGCATGGCTG
* * * *
68639250 CCAGAACAGATAATGTGACAGAGTCACCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAACCA
* * *
68639304 CCAGAACAGATATATGTGGCAAAGCCACCAGAT-CAGATAATTGTGGCATAACCA
1 CCAGAACAGATA-ATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAACCA
68639358 CCAG
1 CCAG
68639362 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAAAGCCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:68644450 original size:27 final size:27
Alignment explanation
Indices: 68644385--68644461 Score: 100
Period size: 27 Copynumber: 2.9 Consensus size: 27
68644375 AAATTACTAA
*
68644385 AATACCCTTGTAGTGTAAAATGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* *
68644412 AATGCCTTTGTAGGGTAAAATGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* * *
68644439 AATACCCCTGTATGGTAGAATGA
1 AATACCCTTGTAGGGTAAAATGA
68644462 TGATTATGCC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAAAATGACCGT
Found at i:68646807 original size:43 final size:43
Alignment explanation
Indices: 68646758--68646883 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 43
68646748 ACATGGATGT
*
68646758 ATATGTGATTACCTGTAAGACCACGTCTGGGACGTTGGCATCG
1 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCG
* * *
68646801 ATATGTGTTTACAAGTAAGACC-CTGTTTGGGACAG-TGGCATCG
1 ATATGTGATTACATGTAAGACCAC-GTCTGGGAC-GTTGGCATCG
* * **
68646844 ATATGAGGTTACATGTAAGACCACACCTGGGACGTTGGCA
1 ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
68646884 CTGTATGATA
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
42 2 0.03
43 65 0.94
44 2 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCATCG
Found at i:68647640 original size:36 final size:36
Alignment explanation
Indices: 68647600--68647671 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
68647590 GTACTTGCAC
*
68647600 ATATTTATGCACATGATGTGTTGGTATGATATATAT
1 ATATTTATACACATGATGTGTTGGTATGATATATAT
*
68647636 ATATTTATACAGATGATGTGTTGGTATGATATATAT
1 ATATTTATACACATGATGTGTTGGTATGATATATAT
68647672 TATCTCAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.32, C:0.04, G:0.19, T:0.44
Consensus pattern (36 bp):
ATATTTATACACATGATGTGTTGGTATGATATATAT
Found at i:68649055 original size:5 final size:5
Alignment explanation
Indices: 68649045--68649082 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
68649035 CAAGTCATAC
68649045 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAAAA GAA
68649083 CAGCTGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:68652240 original size:18 final size:19
Alignment explanation
Indices: 68652214--68652251 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
68652204 CTGCCCTGAT
*
68652214 TTTTTGCATGACAT-TATG
1 TTTTAGCATGACATATATG
*
68652232 TTTTAGCATGTCATATATG
1 TTTTAGCATGACATATATG
68652251 T
1 T
68652252 ATATTGCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.24, C:0.11, G:0.16, T:0.50
Consensus pattern (19 bp):
TTTTAGCATGACATATATG
Found at i:68653377 original size:25 final size:25
Alignment explanation
Indices: 68653329--68653378 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
68653319 AACTGTGAAT
* *
68653329 TATTCTGAAACTATTTTTGATAGTA
1 TATTCTGAAACTATTATAGATAGTA
*
68653354 TATTCTGAAACTATTATAGGTAGTA
1 TATTCTGAAACTATTATAGATAGTA
68653379 CTGAGACACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.44
Consensus pattern (25 bp):
TATTCTGAAACTATTATAGATAGTA
Found at i:68656139 original size:69 final size:70
Alignment explanation
Indices: 68656007--68656139 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
68655997 TAGTTTATTA
* * * * *
68656007 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
68656072 CTTAG
66 CTTAG
68656077 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
68656140 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:68657580 original size:47 final size:47
Alignment explanation
Indices: 68657526--68658073 Score: 943
Period size: 47 Copynumber: 11.6 Consensus size: 47
68657516 TATTTGAATA
*
68657526 AATGTGAAAGTGTCTATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68657573 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68657620 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68657669 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68657716 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68657763 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68657810 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
68657859 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68657906 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
68657953 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
68658000 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
68658047 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
68658074 TCCCGAAGGG
Statistics
Matches: 480, Mismatches: 17, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 387 0.81
49 93 0.19
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:68657849 original size:190 final size:190
Alignment explanation
Indices: 68657526--68658073 Score: 976
Period size: 190 Copynumber: 2.9 Consensus size: 190
68657516 TATTTGAATA
*
68657526 AATGTGAAAGTGTCTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
68657591 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
*
68657656 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-AGCCGATGTGATG
131 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGA-CCGATGTGATG
68657716 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
68657781 TGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
68657846 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
131 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
68657906 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * *
68657971 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAGGGCCGAGT
66 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
* * *
68658034 GGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
68658074 TCCCGAAGGG
Statistics
Matches: 345, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
188 56 0.16
190 288 0.83
191 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (190 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAAT
GGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGACCGATGTGATG
Found at i:68669092 original size:33 final size:32
Alignment explanation
Indices: 68669033--68669096 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
68669023 ACGAAGTCAC
* *
68669033 CAGATATAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATAGATATTGTGGCGAAGCCACCAGAA
*
68669065 CAGATATATATATGTGTGGCGAAGCCACCAGA
1 CAGATATAGATAT-TGTGGCGAAGCCACCAGA
68669097 TTGCAGCGAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (32 bp):
CAGATATAGATATTGTGGCGAAGCCACCAGAA
Found at i:68691315 original size:28 final size:28
Alignment explanation
Indices: 68691252--68691433 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
68691242 ATATTAAGTC
*
68691252 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68691279 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68691307 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68691335 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68691363 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68691391 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68691420 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68691434 CAATCTCATG
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 104 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68699471 original size:28 final size:28
Alignment explanation
Indices: 68699408--68699589 Score: 285
Period size: 28 Copynumber: 6.5 Consensus size: 28
68699398 ATATTAAGTC
*
68699408 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68699435 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
68699463 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68699491 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
68699519 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
68699547 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
68699576 CGCACACTTAGTGC
1 CGCACACTTAGTGC
68699590 CAATCTCATG
Statistics
Matches: 144, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 104 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:68701637 original size:50 final size:50
Alignment explanation
Indices: 68701462--68701689 Score: 180
Period size: 49 Copynumber: 4.7 Consensus size: 50
68701452 TCGGGTTATT
* * * *
68701462 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAG-TATTGAGA--
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGATG
68701510 TGAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATG
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATG
* *
68701558 T--G-TC-AGTGTAAGACCATG-CGTGGGACATGGCATCGGC-ACGGATATG
1 TGAGAGCTAGTGTAAGACCATGTC-TGGGACATGGCATCGGCTAC-GAGATG
* * * * * *
68701604 TGAGAGCTAGTGTAAGACCGTGTCTAGGG-CATGGCGTCGACCT-TGA-TTT
1 TGAGAGCTAGTGTAAGACCATGTCT-GGGACATGGCATCG-GCTACGAGATG
*
68701653 TGATAG-TCAGTGTAAGACCATGTCTGGGACATGGCAT
1 TGAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCAT
68701690 TGACTTGATG
Statistics
Matches: 147, Mismatches: 16, Indels: 33
0.75 0.08 0.17
Matches are distributed among these distances:
44 10 0.07
45 15 0.10
46 25 0.17
47 15 0.10
48 22 0.15
49 30 0.20
50 25 0.17
51 5 0.03
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (50 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATG
Found at i:68701722 original size:47 final size:47
Alignment explanation
Indices: 68701465--68701733 Score: 184
Period size: 47 Copynumber: 5.7 Consensus size: 47
68701455 GGTTATTTGA
*
68701465 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGTA-TTGA--GAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATGGAT
* * *
68701511 GAGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-T-ACGAGAT
1 --GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATG-GAT
* * *
68701557 GTGTCAGTGTAAGACCATG-CGTGGGACATGGCATCGGCAC-GGATATGTGA-
1 GAGCCAGTGTAAGACCATGTC-TGGGACATGGCATC-G-ACTTG--ATG-GAT
* * * *
68701607 GAGCTAGTGTAAGACCGTGTCTAGGG-CATGGCGTCGACCTTGATTTTGAT
1 GAGCCAGTGTAAGACCATGTCT-GGGACATGGCATCGA-CTTGA--TGGAT
* *
68701657 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATTGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
* *
68701703 GAGCCAGTGTAAGAACATGTTTGGGACATGG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGG
68701734 TATCAACATT
Statistics
Matches: 174, Mismatches: 26, Indels: 43
0.72 0.11 0.18
Matches are distributed among these distances:
43 1 0.01
44 13 0.07
45 13 0.07
46 17 0.10
47 41 0.24
48 24 0.14
49 31 0.18
50 26 0.15
51 8 0.05
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
Found at i:68706586 original size:27 final size:27
Alignment explanation
Indices: 68706556--68706706 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
68706546 TAATAAAGAG
* *
68706556 AAATTACTAAAAGACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
68706583 AAATTACCGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
68706610 AAATTA-TCGAAATACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
68706637 AAATTACCGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
68706664 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
68706691 AAATTACCGAAATACC
1 AAATTACTGAAATACC
68706707 TTGTAGTGTA
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
27 112 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:68706638 original size:54 final size:54
Alignment explanation
Indices: 68706569--68706733 Score: 264
Period size: 54 Copynumber: 3.1 Consensus size: 54
68706559 TTACTAAAAG
68706569 ACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTATCGAAAT
1 ACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTATCGAAAT
*
68706623 ACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTA-CTGAAAT
1 ACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTATC-GAAAT
* *
68706677 ACCCTCAATTTGTAAAATTACCGAAATA-CCTTG-TAGTGTAAAATTATCGAAAT
1 ACCCTCGATTTGTAAAATTACCGAAATACCCTTGAT-TTGTAAAATTATCGAAAT
68706730 ACCC
1 ACCC
68706734 CTGTAGGGTA
Statistics
Matches: 104, Mismatches: 4, Indels: 7
0.90 0.03 0.06
Matches are distributed among these distances:
52 1 0.01
53 24 0.23
54 79 0.76
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (54 bp):
ACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTATCGAAAT
Found at i:68706691 original size:81 final size:80
Alignment explanation
Indices: 68706569--68706733 Score: 242
Period size: 81 Copynumber: 2.0 Consensus size: 80
68706559 TTACTAAAAG
** * *
68706569 ACCCTCGATTTGTAAAATTACCGAAATACCCTTGATTTGTAAAATTATCGAAATACCCTCG-ATT
1 ACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATA-CCTCGTA-G
68706633 TGTAAAATTACCGAAAT
64 TGTAAAATTACCGAAAT
* *
68706650 ACCCTCGATTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCGAAATACCTTGTAGTG
1 ACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCTCGTAGTG
*
68706715 TAAAATTATCGAAAT
66 TAAAATTACCGAAAT
68706730 ACCC
1 ACCC
68706734 CTGTAGGGTA
Statistics
Matches: 76, Mismatches: 7, Indels: 3
0.88 0.08 0.03
Matches are distributed among these distances:
80 24 0.32
81 52 0.68
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.32
Consensus pattern (80 bp):
ACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCGAAATACCTCGTAGTG
TAAAATTACCGAAAT
Found at i:68706746 original size:27 final size:26
Alignment explanation
Indices: 68706580--68706747 Score: 108
Period size: 27 Copynumber: 6.3 Consensus size: 26
68706570 CCCTCGATTT
**
68706580 GTAAAATTACCGAAATACCCT-TGATTT
1 GTAAAATTACCGAAATACCCTGT-A-GG
* **
68706607 GTAAAATTATCGAAATACCCTCG-ATTT
1 GTAAAATTACCGAAATACCCT-GTA-GG
**
68706634 GTAAAATTACCGAAATACCCTCG-ATTT
1 GTAAAATTACCGAAATACCCT-GTA-GG
* ** **
68706661 GTAAAATTACTGAAATACCCTCAATTT
1 GTAAAATTACCGAAATACCCTGTA-GG
* *
68706688 GTAAAATTACCGAAATACCTTGTAGT
1 GTAAAATTACCGAAATACCCTGTAGG
*
68706714 GTAAAATTATCGAAATACCCCTGTAGG
1 GTAAAATTACCGAAATA-CCCTGTAGG
68706741 GTAAAAT
1 GTAAAAT
68706748 GACTGTTTTG
Statistics
Matches: 125, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
26 17 0.14
27 108 0.86
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (26 bp):
GTAAAATTACCGAAATACCCTGTAGG
Found at i:68714016 original size:48 final size:46
Alignment explanation
Indices: 68713950--68714070 Score: 154
Period size: 47 Copynumber: 2.6 Consensus size: 46
68713940 GAGGCCAATG
* * ** *
68713950 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTTAAT-GCTGATGC
1 CATGTCCCAAACATGTCTTACACTAGCTCTCATAAT-ATGGCCGAT-C
*
68713997 CATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGGCCGATC
1 CATGTCCCAAACAT-GTCTTACACTAGCTCTCATAATATGGCCGATC
68714044 CATGTCCCAAACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
68714071 ACACATCCAC
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
46 13 0.20
47 29 0.44
48 24 0.36
ACGTcount: A:0.25, C:0.31, G:0.16, T:0.29
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTCATAATATGGCCGATC
Found at i:68714059 original size:94 final size:94
Alignment explanation
Indices: 68713897--68714070 Score: 237
Period size: 94 Copynumber: 1.8 Consensus size: 94
68713887 ATTTTAAGCC
* * *
68713897 GATGGCATGTCCCAAATGGGTCTTACACTAGCTTGCATATCACGAGGCCAATGCATGTCCCAGAC
1 GATGCCATGTCCCAAATGGGTCTTACACTAGCTTGCATA-CACGAGGCCAATCCATGTCCCAAAC
68713962 ATGTCTTACACTAGCTCTCGTCTTAATGCT
65 ATGTCTTACACTAGCTCTCGTCTTAATGCT
* * *
68713992 GATGCCATGTCCCAAACAT-GGTCTTACACTAGCTCT-CATA-ATGTGGCCGATCCATGTCCCAA
1 GATGCCATGTCCC-AA-ATGGGTCTTACACTAGCT-TGCATACACGAGGCCAATCCATGTCCCAA
68714054 ACATGTCTTACACTAGC
63 ACATGTCTTACACTAGC
68714071 ACACATCCAC
Statistics
Matches: 70, Mismatches: 6, Indels: 7
0.84 0.07 0.08
Matches are distributed among these distances:
94 34 0.49
95 12 0.17
96 21 0.30
97 3 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCCAAATGGGTCTTACACTAGCTTGCATACACGAGGCCAATCCATGTCCCAAACA
TGTCTTACACTAGCTCTCGTCTTAATGCT
Found at i:68716975 original size:33 final size:33
Alignment explanation
Indices: 68716938--68717007 Score: 88
Period size: 33 Copynumber: 2.1 Consensus size: 33
68716928 TTGAGATTGC
* *
68716938 ATGTAAGACCATG-TCTAGGACATTGGCATCATT
1 ATGTAAGACCATGCT-TAGGACAGTGGCATCAAT
* *
68716971 ATGTAAGACCTTGCTTGGGACAGTGGCATCAAT
1 ATGTAAGACCATGCTTAGGACAGTGGCATCAAT
68717004 ATGT
1 ATGT
68717008 GATAACATGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (33 bp):
ATGTAAGACCATGCTTAGGACAGTGGCATCAAT
Found at i:68719331 original size:17 final size:17
Alignment explanation
Indices: 68719309--68719341 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
68719299 TGCAAATTAG
68719309 TCCCTATAAAGGTTTCA
1 TCCCTATAAAGGTTTCA
*
68719326 TCCCTATAAGGGTTTC
1 TCCCTATAAAGGTTTC
68719342 TCATAAAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.36
Consensus pattern (17 bp):
TCCCTATAAAGGTTTCA
Found at i:68722953 original size:28 final size:27
Alignment explanation
Indices: 68722882--68722998 Score: 155
Period size: 28 Copynumber: 4.3 Consensus size: 27
68722872 ATGGAGGAAG
*
68722882 TGTTCTAGTGGCTCTGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
*
68722909 TGATCTGGTGGCTCTGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCACAAATATC
* *
68722936 TGTTTCTGGTGGCCCTGCCACAATTATC
1 TG-TTCTGGTGGCTCTGCCACAAATATC
* *
68722964 TGTATCTGGTGACTCTGTCAC-AATATC
1 TGT-TCTGGTGGCTCTGCCACAAATATC
68722991 TGTTCTGG
1 TGTTCTGG
68722999 CAGCCATGTT
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.06
27 36 0.46
28 38 0.48
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (27 bp):
TGTTCTGGTGGCTCTGCCACAAATATC
Found at i:68722989 original size:55 final size:54
Alignment explanation
Indices: 68722882--68722998 Score: 164
Period size: 55 Copynumber: 2.1 Consensus size: 54
68722872 ATGGAGGAAG
* * *
68722882 TGTTCTAGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATC
1 TGTTCTGGTGGCCCTGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATC
* *
68722936 TGTTTCTGGTGGCCCTGCCACAATTATCTGTATCTGGTGACTCTGTCAC-AATATC
1 TG-TTCTGGTGGCCCTGCCACAAATATCTG-ATCTGGTGACTCTGCCACAAATATC
68722991 TGTTCTGG
1 TGTTCTGG
68722999 CAGCCATGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
54 8 0.14
55 32 0.57
56 16 0.29
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (54 bp):
TGTTCTGGTGGCCCTGCCACAAATATCTGATCTGGTGACTCTGCCACAAATATC
Found at i:68726506 original size:13 final size:13
Alignment explanation
Indices: 68726490--68726522 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
68726480 TTTAATTAAA
*
68726490 TTAGTTAATTAGT
1 TTAGATAATTAGT
68726503 TTAGATAATTAGT
1 TTAGATAATTAGT
68726516 TTA-ATAA
1 TTAGATAA
68726523 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:68728993 original size:15 final size:15
Alignment explanation
Indices: 68728973--68729024 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
68728963 AACCGTGTGT
68728973 CACACACGGCCTAGA
1 CACACACGGCCTAGA
* *
68728988 CACACAC--CCGTGTGT
1 CACACACGGCC-T-AGA
68729003 CACACACGGCCTAGA
1 CACACACGGCCTAGA
68729018 CACACAC
1 CACACAC
68729025 CCAAGTGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 2 0.07
14 1 0.03
15 23 0.79
16 1 0.03
17 2 0.07
ACGTcount: A:0.31, C:0.42, G:0.17, T:0.10
Consensus pattern (15 bp):
CACACACGGCCTAGA
Found at i:68728999 original size:30 final size:30
Alignment explanation
Indices: 68728965--68729026 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
68728955 TGGGAGGAAA
68728965 CCGTGTGTCACACACGGCCTAGACACACAC
1 CCGTGTGTCACACACGGCCTAGACACACAC
68728995 CCGTGTGTCACACACGGCCTAGACACACAC
1 CCGTGTGTCACACACGGCCTAGACACACAC
68729025 CC
1 CC
68729027 AAGTGTTTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.42, G:0.19, T:0.13
Consensus pattern (30 bp):
CCGTGTGTCACACACGGCCTAGACACACAC
Found at i:68733995 original size:27 final size:27
Alignment explanation
Indices: 68733929--68734200 Score: 279
Period size: 27 Copynumber: 10.2 Consensus size: 27
68733919 AGTATTTTAG
* * *
68733929 TAATTTTACAAATCGGGAGGTGTTTCAA
1 TAATTTTACAAATCGAG-GGTATTTCGA
68733957 TAA-TTT---AATCGAGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGA
* *
68733980 TAATTTTACAAATCGAAGGTATTTCGG
1 TAATTTTACAAATCGAGGGTATTTCGA
* *
68734007 TAATTTTACAAATCGAGGGTGTTTCAA
1 TAATTTTACAAATCGAGGGTATTTCGA
* * *
68734034 TAATTTTGCAAACCAAGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGA
*
68734061 TAATTTTACAAA-CTAGGGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGA
** *
68734087 TAATTTTACAAATTAAGCGTATTTCGA
1 TAATTTTACAAATCGAGGGTATTTCGA
* *
68734114 TAATTTTACAAATCGAGGATGTTTC-A
1 TAATTTTACAAATCGAGGGTATTTCGA
* * *
68734140 GTAATTTTACAAACCAAGGGTATTTCGG
1 -TAATTTTACAAATCGAGGGTATTTCGA
* *
68734168 TAATTTTACAAA-CTGGGGGTATTTCGG
1 TAATTTTACAAATC-GAGGGTATTTCGA
68734195 TAATTT
1 TAATTT
68734201 CTCTTTATTA
Statistics
Matches: 205, Mismatches: 31, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
23 11 0.05
24 9 0.04
26 27 0.13
27 155 0.76
28 3 0.01
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCGA
Found at i:68734092 original size:107 final size:108
Alignment explanation
Indices: 68733967--68734200 Score: 373
Period size: 107 Copynumber: 2.2 Consensus size: 108
68733957 TAATTTAATC
* *
68733967 GAGGGTATTTCGATAATTTTACAAATCGAAG-GTATTTCGGTAATTTTACAAATCGAGGGTGTTT
1 GAGGGTATTTCGATAATTTTACAAAT-GAAGCGTATTTCGATAATTTTACAAATCGAGGATGTTT
*
68734031 CAATAATTTTGCAAACCAAGGGTATTTCGATAATTTTACAAACT
65 CAATAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAACT
*
68734075 -AGGGTATTTCGATAATTTTACAAATTAAGCGTATTTCGATAATTTTACAAATCGAGGATGTTTC
1 GAGGGTATTTCGATAATTTTACAAATGAAGCGTATTTCGATAATTTTACAAATCGAGGATGTTTC
* *
68734139 AGTAATTTTACAAACCAAGGGTATTTCGGTAATTTTACAAACT
66 AATAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAACT
* *
68734182 GGGGGTATTTCGGTAATTT
1 GAGGGTATTTCGATAATTT
68734201 CTCTTTATTA
Statistics
Matches: 116, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
106 3 0.03
107 97 0.84
108 16 0.14
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (108 bp):
GAGGGTATTTCGATAATTTTACAAATGAAGCGTATTTCGATAATTTTACAAATCGAGGATGTTTC
AATAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAACT
Found at i:68734561 original size:28 final size:28
Alignment explanation
Indices: 68734521--68734604 Score: 105
Period size: 28 Copynumber: 3.0 Consensus size: 28
68734511 CCCTTAGGGA
* * * *
68734521 CCAATCTCGTTCACATGACCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
*
68734549 CTAATCACATTCATATGGCCCATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
* *
68734577 CCAATCATATTCATATGGCCAATCAGGC
1 CCAATCACATTCATATGGCCCATCAGGC
68734605 TCAACTACTT
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 48 1.00
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (28 bp):
CCAATCACATTCATATGGCCCATCAGGC
Found at i:68736999 original size:24 final size:23
Alignment explanation
Indices: 68736972--68737107 Score: 173
Period size: 24 Copynumber: 5.7 Consensus size: 23
68736962 CGGATTTGAG
*
68736972 TGGCACTATGTGCGCGTATTGGTA
1 TGGCACTATGTGTGCGTATT-GTA
68736996 TGGCACTATGTGTGCGTATTTGTA
1 TGGCACTATGTGTGCGTA-TTGTA
*
68737020 TGGCACTATGTGTTCGTATTTGTA
1 TGGCACTATGTGTGCGTA-TTGTA
*
68737044 TGGCACTATGTGTGCGTACATGTA
1 TGGCACTATGTGTGCGTA-TTGTA
* * *
68737068 TGGCACTACGTGTGCGTAATTATT
1 TGGCACTATGTGTGCGT-ATTGTA
68737092 TGGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
68737108 GAGTTGAATC
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
24 97 0.97
25 3 0.03
ACGTcount: A:0.18, C:0.15, G:0.29, T:0.38
Consensus pattern (23 bp):
TGGCACTATGTGTGCGTATTGTA
Found at i:68744931 original size:27 final size:27
Alignment explanation
Indices: 68744637--68744928 Score: 250
Period size: 27 Copynumber: 10.8 Consensus size: 27
68744627 CACTACAAGA
* *
68744637 GTATTTCAATAATTTTACAAATTCGGGG
1 GTATTTCAGTAATTTTACAAA-TCGAGG
** * *
68744665 GTGCTTCGGTAATTTTAAAAATCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
* * *
68744692 ATATTTTAGTAATTTTACAAATCGTGG
1 GTATTTCAGTAATTTTACAAATCGAGG
** * * *
68744719 GTATTTTGGTAATTTTACAAAACAAAG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
68744746 GTATTTC-GATAAATTTACAAATCGAGG
1 GTATTTCAG-TAATTTTACAAATCGAGG
* * * **
68744773 GTGTTTCAGTAATTTTGCAAA-CTAAAA
1 GTATTTCAGTAATTTTACAAATC-GAGG
**
68744800 GTATTTTGGTAATTTTACAAAGT-GAGG
1 GTATTTCAGTAATTTTACAAA-TCGAGG
* *
68744827 GTATTTCGGTAATTTTACAAATTGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
68744854 GTATTT-AGGTAATTTTACAAATCGAGG
1 GTATTTCA-GTAATTTTACAAATCGAGG
* * * *
68744881 GTGTTTCAATAATTTTGCAAACCGAGG
1 GTATTTCAGTAATTTTACAAATCGAGG
*
68744908 GTATTTCAGTAAATTTACAAA
1 GTATTTCAGTAATTTTACAAA
68744929 CCGGGAGTAT
Statistics
Matches: 208, Mismatches: 48, Indels: 17
0.76 0.18 0.06
Matches are distributed among these distances:
26 3 0.01
27 187 0.90
28 18 0.09
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAATCGAGG
Found at i:68747035 original size:20 final size:20
Alignment explanation
Indices: 68746994--68747036 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
68746984 AGTACATGTA
* *
68746994 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTACAACTT
*
68747014 TTCATCAAATTTTACAACTT
1 TTCATAAAATTTTACAACTT
68747034 TTC
1 TTC
68747037 GTTTTAGTCC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.02, T:0.49
Consensus pattern (20 bp):
TTCATAAAATTTTACAACTT
Found at i:68750123 original size:21 final size:22
Alignment explanation
Indices: 68750094--68750136 Score: 79
Period size: 21 Copynumber: 2.0 Consensus size: 22
68750084 ACTTATAATG
68750094 TCCATACCTAGTTCTAAAAGCT
1 TCCATACCTAGTTCTAAAAGCT
68750116 TCCA-ACCTAGTTCTAAAAGCT
1 TCCATACCTAGTTCTAAAAGCT
68750137 ATCTTTGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.33, C:0.28, G:0.09, T:0.30
Consensus pattern (22 bp):
TCCATACCTAGTTCTAAAAGCT
Found at i:68756317 original size:43 final size:42
Alignment explanation
Indices: 68756254--68756375 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
68756244 CAGTACCGTA
* * *
68756254 ATGCCATATCCCAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGGTATGGTCTTACACGTAATCTCATATCG
* * * *
68756296 ATGCCA-ATAGCCTGGCTATGGTCTTTCACGAAATCTCATATCG
1 ATGCCATAT-CCCAGG-TATGGTCTTACACGTAATCTCATATCG
68756339 ATGCCATATCCCAGGTATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGGTATGGTCTTACACGTAATCTCA
68756376 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
41 2 0.03
42 29 0.44
43 33 0.50
44 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGGTATGGTCTTACACGTAATCTCATATCG
Found at i:68760494 original size:46 final size:43
Alignment explanation
Indices: 68760346--68760486 Score: 124
Period size: 46 Copynumber: 3.1 Consensus size: 43
68760336 TGTAACCCGC
*
68760346 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---A
** * *
68760393 -CATTTCA-CAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA-TT-AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAA
*
68760439 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAA
1 CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAA
68760483 CCAT
1 CCAT
68760487 CCTAGTGACA
Statistics
Matches: 76, Mismatches: 11, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 30 0.39
47 30 0.39
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (43 bp):
CCATTAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAA
Found at i:68760912 original size:30 final size:30
Alignment explanation
Indices: 68760878--68760937 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
68760868 ATTTAATACG
68760878 AACTTTGGA-AAAATTACACTTTTGCCCCTA
1 AACTTT-GACAAAATTACACTTTTGCCCCTA
* *
68760908 AACTTTTACATAATTACACTTTTGCCCCTA
1 AACTTTGACAAAATTACACTTTTGCCCCTA
68760938 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:68764885 original size:27 final size:26
Alignment explanation
Indices: 68764854--68765031 Score: 169
Period size: 27 Copynumber: 6.6 Consensus size: 26
68764844 TAAATTGTAC
68764854 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
68764881 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
68764907 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
68764935 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
68764963 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
68764990 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
68765017 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68765032 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:68764970 original size:82 final size:81
Alignment explanation
Indices: 68764855--68765010 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
68764845 AAATTGTACA
* * *
68764855 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
68764919 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68764936 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
68765001 TGCGAGTTGA
65 TGCGAATTGA
68765011 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68765022 original size:82 final size:81
Alignment explanation
Indices: 68764851--68765031 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
68764841 GATTAAATTG
* * *
68764851 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68764916 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68764932 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68764996 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68765014 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68765032 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68771079 original size:46 final size:48
Alignment explanation
Indices: 68770974--68771102 Score: 155
Period size: 46 Copynumber: 2.8 Consensus size: 48
68770964 TGTAACCCGC
68770974 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * *
68771024 TCA-CA---AACTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-ACAT
68771066 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
68771103 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
41 2 0.03
42 6 0.09
43 2 0.03
46 56 0.81
49 1 0.01
50 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:68771531 original size:30 final size:29
Alignment explanation
Indices: 68771497--68771555 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
68771487 ATTTAATACG
68771497 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTT-GAAAAATTACACTTTTGCCCCTA
** *
68771527 AACTTTTCATAATTACACTTTTGCCCCTA
1 AACTTTGAAAAATTACACTTTTGCCCCTA
68771556 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGAAAAATTACACTTTTGCCCCTA
Found at i:68778417 original size:14 final size:14
Alignment explanation
Indices: 68778398--68778440 Score: 61
Period size: 14 Copynumber: 3.0 Consensus size: 14
68778388 ATGGAGAGAT
68778398 CAAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
68778412 CAAAAGAAAAAGAATG
1 CAAAAGAAAAAG-A-G
68778428 -AAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
68778441 TGGAAAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 1 0.04
14 13 0.48
15 12 0.44
16 1 0.04
ACGTcount: A:0.72, C:0.05, G:0.21, T:0.02
Consensus pattern (14 bp):
CAAAAGAAAAAGAG
Found at i:68778431 original size:15 final size:15
Alignment explanation
Indices: 68778398--68778439 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
68778388 ATGGAGAGAT
68778398 CAAAAGAAAAAG-AG
1 CAAAAGAAAAAGAAG
68778412 CAAAAGAAAAAGAATG
1 CAAAAGAAAAAGAA-G
68778428 -AAAAGAAAAAGA
1 CAAAAGAAAAAGA
68778440 GTGGAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.46
15 13 0.50
16 1 0.04
ACGTcount: A:0.74, C:0.05, G:0.19, T:0.02
Consensus pattern (15 bp):
CAAAAGAAAAAGAAG
Found at i:68780556 original size:26 final size:26
Alignment explanation
Indices: 68780520--68780569 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
68780510 TCGTACTATC
68780520 GTCTCCGATCGTGACACAAAATTTTT
1 GTCTCCGATCGTGACACAAAATTTTT
*
68780546 GTCTCTGATCGTGACACAAAATTT
1 GTCTCCGATCGTGACACAAAATTT
68780570 CTAAGTCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (26 bp):
GTCTCCGATCGTGACACAAAATTTTT
Found at i:68783453 original size:29 final size:29
Alignment explanation
Indices: 68783386--68783496 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 29
68783376 AAATTCACAT
* * *
68783386 ACATGTATCTAGCCCATTAAGCCC-AATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
**
68783414 GTAT-TCATATGGCCCATTAGGCCCAAATC
1 ACATGT-ATATGGCCCATTAGGCCCAAATC
68783443 ACATGTATATGGCCCATTAGGCCCAAATC
1 ACATGTATATGGCCCATTAGGCCCAAATC
* * *
68783472 ACATTTATATGGCCCGTTCGGCCCA
1 ACATGTATATGGCCCATTAGGCCCA
68783497 GTCACATTCA
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.01
28 17 0.24
29 51 0.73
30 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
ACATGTATATGGCCCATTAGGCCCAAATC
Found at i:68783503 original size:57 final size:57
Alignment explanation
Indices: 68783386--68783496 Score: 141
Period size: 58 Copynumber: 1.9 Consensus size: 57
68783376 AAATTCACAT
* **
68783386 ACATGTATCTAGCCCATTAAGCCCAATCGTATTCATATGGCCCATTAGGCCCAAATC
1 ACATGTATATAGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * * *
68783443 ACATGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTCGGCCCA
1 ACATGTATATAGCCCATTAAGCCC-AATCACATTCATATGGCCCATTAGGCCCA
68783497 GTCACATTCA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (57 bp):
ACATGTATATAGCCCATTAAGCCCAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:68785242 original size:43 final size:42
Alignment explanation
Indices: 68785193--68785334 Score: 149
Period size: 43 Copynumber: 3.3 Consensus size: 42
68785183 AAAAGCGTCA
* *
68785193 CTAAAGAATGTGACTTGTAGCGGCACTTTTCATACAAACATCG
1 CTAAAGAATATGACTT-TAGCGGCACTTTTCATACAAACACCG
* * * * *
68785236 CTAAAGAATGTGACCTTTAGTGGCTCTTTTCATACAAACGCCA
1 CTAAAGAATATGA-CTTTAGCGGCACTTTTCATACAAACACCG
* * ** * *
68785279 CTAAAGAACATGACTTTAGCAGTGCTTTTCATACCAATACCG
1 CTAAAGAATATGACTTTAGCGGCACTTTTCATACAAACACCG
68785321 CTAAAGAATATGAC
1 CTAAAGAATATGAC
68785335 CTTCAGTGGT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 34 0.41
43 45 0.55
44 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (42 bp):
CTAAAGAATATGACTTTAGCGGCACTTTTCATACAAACACCG
Found at i:68785307 original size:85 final size:86
Alignment explanation
Indices: 68785143--68785362 Score: 223
Period size: 85 Copynumber: 2.6 Consensus size: 86
68785133 TTATGTAAAA
* * * * * * * * **
68785143 AAACACCGCTAAAGAACATGACTTTTATTGGCGTTTTTGA-A-AAAGCGTCACTAAAGAATGTGA
1 AAACACCGCTAAAGAATATGACCTTCAGTGGTGCTTTTCACACAAA-CGCCACTAAAGAACATGA
*
68785206 CTTGTAGCGGCACTTTTCATAC
65 CTTGTAGCAGCACTTTTCATAC
* * * *
68785228 AAACATCGCTAAAGAATGTGACCTTTAGTGGCT-CTTTTCATACAAACGCCACTAAAGAACATGA
1 AAACACCGCTAAAGAATATGACCTTCAGTGG-TGCTTTTCACACAAACGCCACTAAAGAACATGA
**
68785292 CTT-TAGCAGTGCTTTTCATAC
65 CTTGTAGCAGCACTTTTCATAC
* *
68785313 CAATACCGCTAAAGAATATGACCTTCAGTGGTGCTTTTCACACAAACGCC
1 AAACACCGCTAAAGAATATGACCTTCAGTGGTGCTTTTCACACAAACGCC
68785363 TCTTTTCTCA
Statistics
Matches: 111, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
84 1 0.01
85 88 0.79
86 19 0.17
87 3 0.03
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (86 bp):
AAACACCGCTAAAGAATATGACCTTCAGTGGTGCTTTTCACACAAACGCCACTAAAGAACATGAC
TTGTAGCAGCACTTTTCATAC
Found at i:68785309 original size:42 final size:43
Alignment explanation
Indices: 68785261--68785362 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 43
68785251 TTTAGTGGCT
*
68785261 CTTTTCATACAAACGCCACTAAAGAACATGA-CTTTAGCAGTG
1 CTTTTCATACAAACGCCACTAAAGAACATGACCTTCAGCAGTG
* ** * * **
68785303 CTTTTCATACCAATACCGCTAAAGAATATGACCTTCAGTGGTG
1 CTTTTCATACAAACGCCACTAAAGAACATGACCTTCAGCAGTG
*
68785346 CTTTTCACACAAACGCC
1 CTTTTCATACAAACGCC
68785363 TCTTTTCTCA
Statistics
Matches: 47, Mismatches: 12, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
42 26 0.55
43 21 0.45
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (43 bp):
CTTTTCATACAAACGCCACTAAAGAACATGACCTTCAGCAGTG
Found at i:68785433 original size:43 final size:43
Alignment explanation
Indices: 68785364--68785587 Score: 192
Period size: 43 Copynumber: 5.3 Consensus size: 43
68785354 ACAAACGCCT
* * * *
68785364 CTTTTCTCAAAAATGTCGCTAAAGAACGTGACCTTTAGCGGTG
1 CTTTTCTCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCG
* * * * * *
68785407 CTTTTCTCAAAAACGCCACTACAGAACTTAACCTATAGTGGC-
1 CTTTTCTCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCG
* * * *
68785449 ATTTT-TCATACAAAAGCTGCTAAAGAACATGACCTTTA-CGGCA
1 CTTTTCTCA-A-AAACGCCGCTAAAGAACATGACCTTTAGCGGCG
* *
68785492 CTTTTCTCAAAAACGCCGCT-AAG-A-ATGTCACATTAGCGGCG
1 CTTTTCTCAAAAACGCCGCTAAAGAACATGAC-CTTTAGCGGCG
* * *
68785533 CTTTTCAT-ACAAACACCGCTAAATAACATGACCTTTAGCGGCG
1 CTTTTC-TCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCG
68785576 CTTTTCTCAAAA
1 CTTTTCTCAAAA
68785588 CCCACTAATT
Statistics
Matches: 140, Mismatches: 30, Indels: 22
0.73 0.16 0.11
Matches are distributed among these distances:
39 4 0.03
40 5 0.04
41 26 0.19
42 20 0.14
43 78 0.56
44 7 0.05
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
CTTTTCTCAAAAACGCCGCTAAAGAACATGACCTTTAGCGGCG
Found at i:68785537 original size:41 final size:43
Alignment explanation
Indices: 68785467--68785587 Score: 117
Period size: 41 Copynumber: 2.9 Consensus size: 43
68785457 TACAAAAGCT
* * * *
68785467 GCTAAAGAACATGACCTTTA-CGGCACTTTTCTCAAAAACGCC
1 GCTAAATAACATGACCATTAGCGGCGCTTTTCTCAAAAACACC
* * *
68785509 GCT-AA-GA-ATGTCACATTAGCGGCGCTTTTCAT-ACAAACACC
1 GCTAAATAACATGAC-CATTAGCGGCGCTTTTC-TCAAAAACACC
*
68785550 GCTAAATAACATGACCTTTAGCGGCGCTTTTCTCAAAA
1 GCTAAATAACATGACCATTAGCGGCGCTTTTCTCAAAA
68785588 CCCACTAATT
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
39 4 0.06
40 5 0.08
41 22 0.35
42 7 0.11
43 20 0.32
44 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
GCTAAATAACATGACCATTAGCGGCGCTTTTCTCAAAAACACC
Found at i:68785561 original size:83 final size:86
Alignment explanation
Indices: 68785380--68785594 Score: 264
Period size: 83 Copynumber: 2.6 Consensus size: 86
68785370 TCAAAAATGT
* * *
68785380 CGCTAAAGAACGTGACCTTTAGCGGTGCTTTTCTCAAAAACGCCACTACAGAACTTAACCTATAG
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAAACGCCACTACAGAACTTAACATATAG
* *
68785445 TGGCATTTTTCATACAAAAGC
66 CGGCACTTTTCATACAAAAGC
* * * *
68785466 TGCTAAAGAACATGACCTTTA-CGGCACTTTTCTCAAAAACGCCGCTA-AGAA-TGTCACAT-TA
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAAACGCCACTACAGAACT-TAACATATA
*
68785527 GCGGCGCTTTTCATACAAACA-C
65 GCGGCACTTTTCATACAAA-AGC
*
68785549 CGCTAAATAACATGACCTTTAGCGGCGCTTTTCTC-AAAAC-CCACTA
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAAACGCCACTA
68785595 ATTTTAGCAG
Statistics
Matches: 112, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
82 5 0.04
83 44 0.39
84 21 0.19
85 23 0.21
86 19 0.17
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (86 bp):
CGCTAAAGAACATGACCTTTAGCGGCGCTTTTCTCAAAAACGCCACTACAGAACTTAACATATAG
CGGCACTTTTCATACAAAAGC
Found at i:68786320 original size:13 final size:14
Alignment explanation
Indices: 68786286--68786323 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
68786276 CGATGAATAT
68786286 ACCATTATAATTAA
1 ACCATTATAATTAA
*
68786300 ACCATTATGATTAA
1 ACCATTATAATTAA
68786314 A-CATTATAAT
1 ACCATTATAAT
68786324 ATTTAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 8 0.36
14 14 0.64
ACGTcount: A:0.47, C:0.13, G:0.03, T:0.37
Consensus pattern (14 bp):
ACCATTATAATTAA
Found at i:68786493 original size:20 final size:20
Alignment explanation
Indices: 68786455--68786493 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
68786445 AGTTCCTACA
*
68786455 AATAGTAAAAAATATTATTT
1 AATAGTAAAAAATAATATTT
68786475 AATAG-AAAAAATTAATATT
1 AATAGTAAAAAA-TAATATT
68786494 GACACAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (20 bp):
AATAGTAAAAAATAATATTT
Found at i:68800730 original size:132 final size:134
Alignment explanation
Indices: 68800327--68800843 Score: 543
Period size: 132 Copynumber: 3.9 Consensus size: 134
68800317 TAGAAAACAC
* * * *
68800327 GAGTGAAATTCCGAAGAGATATTCGATTATTTTGAACAAATGGGAGATTGCAACCCAGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * * * **
68800392 GGGCACTATTCCCCGAATTGCCGAACACCGAACAT-TT-CTTTCGTTTTAAAGGGTTTTTAGAAA
66 GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTA-AAA
*
68800455 -ACGT
130 GACAT
* * * * * *
68800459 GAGTGAAATTCCGAAGGAATCTTCGATTATTTTGAACAAATGAAAAAGTGCAACCCCGCACGATA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
** * * * * *
68800524 GGATACGATT-CTCGTATTGCCAAACATCGAACATC--ACCTTTGTTTTAAAGGATTTTTAGAAG
66 GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTAAAAG
68800586 ACAT
131 ACAT
** * * *
68800590 GAGTGAAATTTTGAAGGGATATTCGATTATCTTGAACAAACGAGAAATTGCAACCTAGCACGTTA
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
* * * **
68800655 GGGCATGATTCCGTGAATTGCCAAATATC-AA-ATCTTACCTTCGCCTTAAAGAATTTTTAAAAG
66 GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTAAAAG
68800718 ACAT
131 ACAT
* ** * * *
68800722 GGGTGAAATTTTGAAGGGATATTCGATCATTTTGAGA-AAACGAGAAATTGCAACCCAACACGTT
1 GAGTGAAATTCCGAAGGGATATTCGATTATTTTGA-ACAAACGAGAAATTGCAACCCAGCACGAT
* * *
68800786 AGGGCACAATTCCGCGAATTGCCAAATATC-AA-ATCTTGCCTTCGTTTTAAAGAATTTT
65 AGGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTT
68800844 GAAATGAATA
Statistics
Matches: 324, Mismatches: 54, Indels: 14
0.83 0.14 0.04
Matches are distributed among these distances:
130 5 0.02
131 105 0.32
132 213 0.66
133 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (134 bp):
GAGTGAAATTCCGAAGGGATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATA
GGGCACGATTCCGCGAATTGCCAAACATCGAACATCTTACCTTCGTTTTAAAGAATTTTTAAAAG
ACAT
Found at i:68801205 original size:14 final size:14
Alignment explanation
Indices: 68801186--68801215 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
68801176 AACACGACAC
68801186 AAAAATAATGGACT
1 AAAAATAATGGACT
*
68801200 AAAAATGATGGACT
1 AAAAATAATGGACT
68801214 AA
1 AA
68801216 CAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.17, T:0.20
Consensus pattern (14 bp):
AAAAATAATGGACT
Found at i:68805032 original size:20 final size:20
Alignment explanation
Indices: 68804999--68805042 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
68804989 AGCACACGTA
* *
68804999 TTCATAAAAATTTAGAATTT
1 TTCATAAAAATTTACAACTT
* *
68805019 TTCATCAAACTTTACAACTT
1 TTCATAAAAATTTACAACTT
68805039 TTCA
1 TTCA
68805043 GTTTCATCCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (20 bp):
TTCATAAAAATTTACAACTT
Found at i:68805138 original size:21 final size:21
Alignment explanation
Indices: 68805092--68805139 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
68805082 GTAAAAAGTT
*
68805092 ATTTATCTATCAAAAATCTTTC
1 ATTT-TCTATCAAAAATCTTTA
*
68805114 ATTTTCTATCATAAAT-TTCTA
1 ATTTTCTATCAAAAATCTT-TA
68805135 ATTTT
1 ATTTT
68805140 TAGCATATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 17 0.74
22 4 0.17
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTTTCTATCAAAAATCTTTA
Found at i:68806643 original size:7 final size:8
Alignment explanation
Indices: 68806619--68806658 Score: 73
Period size: 8 Copynumber: 5.1 Consensus size: 8
68806609 AAAATTTTAT
68806619 TGTAAAAG
1 TGTAAAAG
68806627 TGTAAAAG
1 TGTAAAAG
68806635 TGT-AAAG
1 TGTAAAAG
68806642 TGTAAAAG
1 TGTAAAAG
68806650 TGTAAAAG
1 TGTAAAAG
68806658 T
1 T
68806659 TGCCTGCTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 7 0.23
8 24 0.77
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (8 bp):
TGTAAAAG
Found at i:68806643 original size:15 final size:15
Alignment explanation
Indices: 68806623--68806655 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
68806613 TTTTATTGTA
68806623 AAAGTGTAAAAGTGT
1 AAAGTGTAAAAGTGT
68806638 AAAGTGTAAAAGTGT
1 AAAGTGTAAAAGTGT
68806653 AAA
1 AAA
68806656 AGTTGCCTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (15 bp):
AAAGTGTAAAAGTGT
Found at i:68808038 original size:40 final size:34
Alignment explanation
Indices: 68807998--68808066 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
68807988 CCAAGTATAT
68807998 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
1 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
*
68808032 GAATATGAAGTTTGTGTTGGTATTTGGTTCTAAG
1 GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
68808066 G
1 G
68808067 TATAAGTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.03, G:0.29, T:0.43
Consensus pattern (34 bp):
GAATATGAAGTTTGTATTGGTATTTGGTTCTAAG
Found at i:68813036 original size:68 final size:69
Alignment explanation
Indices: 68812916--68813056 Score: 248
Period size: 68 Copynumber: 2.1 Consensus size: 69
68812906 CTTAATTTTC
*
68812916 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAATTGTTTGATATAGCATTATTGAGTTGATTG
1 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
68812981 CATG
66 CATG
* *
68812985 ATAG-ATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGTTATATCATTATTGAGTTGATTG
1 ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
68813049 CATG
66 CATG
68813053 ATAG
1 ATAG
68813057 CTAATTTAGT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
68 65 0.94
69 4 0.06
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (69 bp):
ATAGTATTTCATGCATTCTGGTAAGTAATAAAGAAATGTTTGATATAGCATTATTGAGTTGATTG
CATG
Found at i:68831870 original size:45 final size:45
Alignment explanation
Indices: 68831693--68831870 Score: 177
Period size: 45 Copynumber: 4.0 Consensus size: 45
68831683 ATGCTATCTC
* * * * *
68831693 ATATCGATGCCACTGTCCCAGACAGGGTCTTGCTCG-AATC-TA-
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
* * * *
68831735 ATA-CGATGTCAATGTCCCAGACATGGTCTTACAT-GTAACCACAC
1 ATATCGATGCCAATGTCCCAGACATGGTCTTAC-TCGAAAACACAT
* * *
68831779 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACGCAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
** *
68831824 ATATCGATGCCAATGTCCCAGATGTGGTCTTACTCGAAAATACAT
1 ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
68831869 AT
1 AT
68831871 CAAAATCCTA
Statistics
Matches: 111, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.23
42 7 0.06
43 1 0.01
44 3 0.03
45 74 0.67
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (45 bp):
ATATCGATGCCAATGTCCCAGACATGGTCTTACTCGAAAACACAT
Found at i:68838738 original size:40 final size:40
Alignment explanation
Indices: 68838683--68838846 Score: 213
Period size: 40 Copynumber: 4.1 Consensus size: 40
68838673 CGGGATTTAT
* *
68838683 CCGGATATAACAACTCGCACAAATGCCTTCAGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
68838723 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * * *
68838763 CCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGC
1 CCGGATAT-AGCAACTCGCACAAATGCCTTCGGGTCTTAGC
* * * *
68838803 CCGGATATAGCAACTCACACGAATGCCTTCGGATCTTAGT
1 CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
68838843 CCGG
1 CCGG
68838847 TTATCATTCG
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 102 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
Found at i:68846512 original size:25 final size:25
Alignment explanation
Indices: 68846476--68846531 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
68846466 TTTCTCCTAA
68846476 ATTTTAATTTTATTCAATTATCTAAT
1 ATTTTAATTTTATTCAATTAT-TAAT
* *
68846502 TTTTTAA-TTTATTGAATTATTAAT
1 ATTTTAATTTTATTCAATTATTAAT
68846526 ATTTTA
1 ATTTTA
68846532 TATTAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 9 0.33
25 12 0.44
26 6 0.22
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTTTAATTTTATTCAATTATTAAT
Found at i:68855257 original size:49 final size:49
Alignment explanation
Indices: 68855079--68855258 Score: 177
Period size: 49 Copynumber: 3.7 Consensus size: 49
68855069 TATGTAGCTA
* * * * * *
68855079 GGTCACATGTGTAGTACTAAGTGCAAGCTACTATGCGCACCTGATAACT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
* * * *
68855128 --ACGATCAGGTGT-GTACTAAGTGCAGGCTACTACGAGTATCAGATAGTT
1 GGTC-A-CATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
* * * *
68855176 AGGTCACGTGTGTAGTACTAAGTGCAGACTACTACGTGTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
*
68855226 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
68855259 TGCATACTAG
Statistics
Matches: 104, Mismatches: 21, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
47 1 0.01
48 29 0.28
49 41 0.39
50 32 0.31
51 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGAGTACCAGATAATT
Found at i:68860487 original size:49 final size:47
Alignment explanation
Indices: 68860241--68860559 Score: 557
Period size: 47 Copynumber: 6.7 Consensus size: 47
68860231 ATGATAGTAT
68860241 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
68860288 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
68860335 TGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
68860382 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
68860429 GGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
*
68860478 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAA
68860527 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
68860560 CCCGAAGGGC
Statistics
Matches: 264, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
47 171 0.65
49 89 0.34
50 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:68860733 original size:37 final size:37
Alignment explanation
Indices: 68860677--68860755 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
68860667 CCGAGCTCTG
* * * *
68860677 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
* *
68860714 AAGACCCGATAACTTCGTGTGGAGATTATGTCTAGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
68860751 AAGAC
1 AAGAC
68860756 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCAGGT
Found at i:68863117 original size:18 final size:19
Alignment explanation
Indices: 68863084--68863119 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
68863074 TTAAATTTAG
*
68863084 TAAATTAATTGAATTATGT
1 TAAATTAAATGAATTATGT
68863103 TAAATTAAATG-ATTATG
1 TAAATTAAATGAATTATG
68863120 GTTCCAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.11, T:0.44
Consensus pattern (19 bp):
TAAATTAAATGAATTATGT
Found at i:68865387 original size:27 final size:27
Alignment explanation
Indices: 68865347--68865458 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
68865337 AGGAAGCATC
*
68865347 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
68865374 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
68865401 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
68865429 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
68865455 CTGG
1 CTGG
68865459 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:68865453 original size:54 final size:54
Alignment explanation
Indices: 68865347--68865458 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
68865337 AGGAAGCATC
* *
68865347 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
68865401 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
68865455 CTGG
1 CTGG
68865459 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:68874327 original size:49 final size:49
Alignment explanation
Indices: 68874258--68874645 Score: 576
Period size: 49 Copynumber: 8.1 Consensus size: 49
68874248 GAAATGATAG
68874258 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68874307 TAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68874354 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68874403 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68874450 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * *
68874499 CAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
68874546 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
68874595 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68874642 TAAG
1 TAAG
68874646 TCCCGAAGGG
Statistics
Matches: 306, Mismatches: 27, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
47 140 0.46
48 1 0.00
49 165 0.54
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:68874423 original size:96 final size:96
Alignment explanation
Indices: 68874258--68874645 Score: 641
Period size: 96 Copynumber: 4.0 Consensus size: 96
68874248 GAAATGATAG
* *
68874258 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCA
68874323 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
68874354 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCA
68874419 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * *
68874450 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCA
68874515 ATGTGATGAATGTGAAAGTGTATATATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
* * * *
68874546 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTCACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCA
* * *
68874611 ACGTGATGGATGTGAAAGTGTATAAATGTGA
66 ATGTGATGAATGTGAAAGTGTATATATGTGA
68874642 TAAG
1 TAAG
68874646 TCCCGAAGGG
Statistics
Matches: 281, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
96 281 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGACAAGGCCGAATGGCCA
ATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:68876718 original size:43 final size:43
Alignment explanation
Indices: 68876670--68876955 Score: 464
Period size: 43 Copynumber: 6.4 Consensus size: 43
68876660 TTGGTTTTCA
68876670 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
68876713 GCACTAAGTGTGCGGGCAATAAGTGTTCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGC--G------G-G--CAATAAGTGTTCACGGTTGTGAGATTG
68876767 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
68876810 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
*
68876853 ACACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
68876896 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
68876939 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
68876956 TTGAAATGCA
Statistics
Matches: 230, Mismatches: 2, Indels: 22
0.91 0.01 0.09
Matches are distributed among these distances:
43 184 0.80
45 2 0.01
46 1 0.00
51 1 0.00
52 2 0.01
54 40 0.17
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:68876720 original size:28 final size:28
Alignment explanation
Indices: 68876684--68876777 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 28
68876674 TAAGTGTGCG
68876684 GGCAATAAGTGTTCACGGTTGTGAGATT
1 GGCAATAAGTGTTCACGGTTGTGAGATT
* * * *** *
68876712 GGCACTAAGTGTGC-GGGCAAT-A-AGT
1 GGCAATAAGTGTTCACGGTTGTGAGATT
*
68876737 GTTCAATAAGTGTTCACGGTTGTGAGATT
1 G-GCAATAAGTGTTCACGGTTGTGAGATT
*
68876766 GGCACTAAGTGT
1 GGCAATAAGTGT
68876778 GCGGGCAATA
Statistics
Matches: 45, Mismatches: 17, Indels: 8
0.64 0.24 0.11
Matches are distributed among these distances:
25 3 0.07
26 11 0.24
27 6 0.13
28 22 0.49
29 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.30
Consensus pattern (28 bp):
GGCAATAAGTGTTCACGGTTGTGAGATT
Found at i:68876972 original size:29 final size:29
Alignment explanation
Indices: 68876937--68877010 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
68876927 GTTGTGAGAT
* *
68876937 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
68876966 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
68876995 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
68877011 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:68877595 original size:40 final size:40
Alignment explanation
Indices: 68877321--68877581 Score: 287
Period size: 40 Copynumber: 6.5 Consensus size: 40
68877311 TCGAATGATG
* *
68877321 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * *
68877361 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAGTGA-TATA
*
68877401 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
68877441 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
68877481 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * ** * * *
68877521 TTCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
68877561 TCCGGGCTAGGTCCCGAAGAG
1 TCCGGGCTAAGTCCCGAAGAG
68877582 TAATCATGAT
Statistics
Matches: 185, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.01
40 165 0.89
41 19 0.10
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:68881107 original size:49 final size:49
Alignment explanation
Indices: 68881038--68881329 Score: 382
Period size: 49 Copynumber: 6.1 Consensus size: 49
68881028 GAAATGATAG
68881038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68881087 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
*
68881134 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * *
68881183 -CAGAGCCGAGTGGCCAACGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAG-GCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* *
68881230 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * * *
68881279 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTGTA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
68881326 TAAG
1 TAAG
68881330 TCCCGAAGGG
Statistics
Matches: 211, Mismatches: 26, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
47 91 0.43
48 5 0.02
49 115 0.55
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Done.