Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 216 of 295
Found at i:68881205 original size:96 final size:96
Alignment explanation
Indices: 68881038--68881329 Score: 469
Period size: 96 Copynumber: 3.0 Consensus size: 96
68881028 GAAATGATAG
* * * *
68881038 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATA-AGGCCTAATGGCC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGA-GCCGAGTGGCC
* *
68881102 GATGTGATGAATGTGAAAGTGTATATATGTGA
65 AACGTGATGAATGTGAAAGTGTATATATGTGA
68881134 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGAGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGAGCCGAGTGGCCA
68881199 ACGTGATGAATGTGAAAGTGTATATATGTGA
66 ACGTGATGAATGTGAAAGTGTATATATGTGA
* *
68881230 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTCACAGGGCCGAGTGGCCA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGAGCCGAGTGGCCA
* * *
68881295 ACGTGATGGATGTGAAAGTGTGTAAATGTGA
66 ACGTGATGAATGTGAAAGTGTATATATGTGA
68881326 TAAG
1 TAAG
68881330 TCCCGAAGGG
Statistics
Matches: 184, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
96 183 0.99
97 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.28
Consensus pattern (96 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGACAGAGCCGAGTGGCCA
ACGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:68884241 original size:27 final size:27
Alignment explanation
Indices: 68884201--68884312 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
68884191 AGGAAGCGTC
*
68884201 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
68884228 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
68884255 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
68884283 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
68884309 CTGG
1 CTGG
68884313 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:68884307 original size:54 final size:54
Alignment explanation
Indices: 68884201--68884312 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
68884191 AGGAAGCGTC
* *
68884201 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
68884255 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
68884309 CTGG
1 CTGG
68884313 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:68890788 original size:79 final size:82
Alignment explanation
Indices: 68890677--68890861 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
68890667 GCTACTCGTT
* * *
68890677 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
68890740 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
68890757 CAAATACCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
68890820 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
68890837 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68890862 CATCATTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:68890861 original size:40 final size:40
Alignment explanation
Indices: 68890658--68890861 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
68890648 CGGAATTTAA
** *
68890658 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
68890698 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68890738 CCGGATTTAGTAACTCGCACAAATACCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
68890777 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
68890817 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
68890857 CCGGA
1 CCGGA
68890862 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:68898619 original size:40 final size:39
Alignment explanation
Indices: 68898582--68898763 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 39
68898572 GCTACTCGTT
*
68898582 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCGCA
* *
68898622 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTTAGTAACTCGCA
* *
68898662 CAAATGCCTTCGGG-CTTAGCCCGGATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
* * * * *
68898700 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTTAGTAAC-TCGCA
68898741 CAAA-GCCTTCGGGAC-TAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
68898764 ACATCATTCA
Statistics
Matches: 121, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
37 2 0.02
38 23 0.19
39 25 0.21
40 58 0.48
41 13 0.11
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTTAGTAACTCGCA
Found at i:68898725 original size:78 final size:80
Alignment explanation
Indices: 68898582--68898764 Score: 223
Period size: 78 Copynumber: 2.3 Consensus size: 80
68898572 GCTACTCGTT
* *
68898582 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGAC-TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
68898647 ATTTAGTAAC-TCGCA
65 ATATAGTAACTTAGCA
* **
68898662 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGAC-TAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
68898724 GATATGGTCACTTAGCA
64 GATATAGTAACTTAGCA
68898741 CAAA-GCCTTCGGGACTAGCCCGGA
1 CAAATGCCTTCGGGACTAGCCCGGA
68898765 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
77 3 0.03
78 54 0.60
79 19 0.21
80 14 0.16
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTTAGCA
Found at i:68912019 original size:47 final size:47
Alignment explanation
Indices: 68911954--68912077 Score: 187
Period size: 47 Copynumber: 2.6 Consensus size: 47
68911944 GATGCGAATG
* *
68911954 TCCAAACTCATTGAGTTGAGGCCGAGTTCATGAAATGTAACTAGGCA
1 TCCAGACTCATTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* * *
68912001 TCCAGACTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCA
1 TCCAGACTCATTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
68912048 TCC-GAACTCATTGAGTTGAGTCCGAGTTCA
1 TCCAG-ACTCATTGAGTTGAGTCCGAGTTCA
68912078 CTTATGGATG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
46 1 0.01
47 67 0.99
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (47 bp):
TCCAGACTCATTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
Found at i:68918390 original size:20 final size:22
Alignment explanation
Indices: 68918365--68918406 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
68918355 ATTTCGTACG
68918365 TTGGCCCATTT-TC-TTCCTTT
1 TTGGCCCATTTCTCGTTCCTTT
68918385 TTGGCCCATTTCTCGTTCCTTT
1 TTGGCCCATTTCTCGTTCCTTT
68918407 CACTCTCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 2 0.10
22 7 0.35
ACGTcount: A:0.05, C:0.31, G:0.12, T:0.52
Consensus pattern (22 bp):
TTGGCCCATTTCTCGTTCCTTT
Found at i:68919723 original size:27 final size:27
Alignment explanation
Indices: 68919693--68919747 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
68919683 ATAAATGCCT
68919693 ATGTTTTAATTCAAGATATATCAATAA
1 ATGTTTTAATTCAAGATATATCAATAA
68919720 ATGTTTTAATTCAAGATATATCAATAA
1 ATGTTTTAATTCAAGATATATCAATAA
68919747 A
1 A
68919748 CATTATAGAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (27 bp):
ATGTTTTAATTCAAGATATATCAATAA
Found at i:68925883 original size:49 final size:49
Alignment explanation
Indices: 68925827--68926053 Score: 274
Period size: 49 Copynumber: 4.6 Consensus size: 49
68925817 ATCTGGTACG
* * * *
68925827 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
*
68925876 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
* * ** * *
68925925 CATAGTACCCTACACTTAGTACTACACACGTGACCTAACCATCTGATATA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACA
* * * * * *
68925975 CATAGTAGCCTACACTTAGTACTACACACGTGATCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGATACA
68926026 CATAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
68926054 TGCGACCTCA
Statistics
Matches: 153, Mismatches: 22, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
49 76 0.50
50 42 0.27
51 34 0.22
52 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACA
Found at i:68928226 original size:15 final size:15
Alignment explanation
Indices: 68928174--68928240 Score: 68
Period size: 15 Copynumber: 4.5 Consensus size: 15
68928164 TAAAGATAAT
*
68928174 AAGAAAACC-GAATA
1 AAGAAACCCAGAATA
*
68928188 AAGAAATCCA-AGATA
1 AAGAAACCCAGA-ATA
68928203 GAA-AAACCCAGAATA
1 -AAGAAACCCAGAATA
*
68928218 AAGAAACCCAGAGTA
1 AAGAAACCCAGAATA
68928233 AAGAAACC
1 AAGAAACC
68928241 TAAGATACGA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
14 11 0.24
15 31 0.69
16 3 0.07
ACGTcount: A:0.60, C:0.18, G:0.15, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:68928240 original size:30 final size:30
Alignment explanation
Indices: 68928174--68928240 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
68928164 TAAAGATAAT
* *
68928174 AAGAAAACCGAATAAAGAAATCCAAGATAG
1 AAGAAACCCGAATAAAGAAACCCAAGATAG
68928204 AA-AAACCCAGAATAAAGAAACCC-AGAGTA-
1 AAGAAACCC-GAATAAAGAAACCCAAGA-TAG
68928233 AAGAAACC
1 AAGAAACC
68928241 TAAGATACGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
29 10 0.31
30 22 0.69
ACGTcount: A:0.60, C:0.18, G:0.15, T:0.07
Consensus pattern (30 bp):
AAGAAACCCGAATAAAGAAACCCAAGATAG
Found at i:68931304 original size:49 final size:49
Alignment explanation
Indices: 68931240--68931477 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
68931230 TAGCCAAAGC
* * * *
68931240 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
68931289 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* * * *
68931338 TATCCGGTACACGTAGCAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
68931388 CATCTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
* * * *
68931439 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
68931478 TGCGACCTCA
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 88 0.54
50 41 0.25
51 33 0.20
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:68931417 original size:99 final size:100
Alignment explanation
Indices: 68931240--68931484 Score: 296
Period size: 99 Copynumber: 2.5 Consensus size: 100
68931230 TAGCCAAAGC
* * * * * ** *
68931240 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCTGGTACACATAG
1 TATCCGGTACACATAGCAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACATAG
68931305 TAGCCTGCACTTAGTACTACACACGTGA-C-CAAT
66 TAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * *
68931338 TATCCGGTACACGTAGCAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTA
1 TATCCGGTACACATAGCAGCCTGCACTTAGTACTACACACGCGACC-AACCATCTGATACACATA
* *
68931403 GTAGCCTGTACTTAGTACTACACACGTGATCACAGT
65 GTAGCCTGCACTTAGTACTACACACGTGATCACAAT
* * * * * *
68931439 TTTCGGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACC
1 TATCCGGTACACATAGCAGCCTGCACTTAGTACTACACACGCGACC
68931485 TCACAATAGA
Statistics
Matches: 123, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
98 39 0.32
99 42 0.34
100 1 0.01
101 41 0.33
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (100 bp):
TATCCGGTACACATAGCAGCCTGCACTTAGTACTACACACGCGACCAACCATCTGATACACATAG
TAGCCTGCACTTAGTACTACACACGTGATCACAAT
Found at i:68933851 original size:19 final size:19
Alignment explanation
Indices: 68933814--68933851 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
68933804 ACCTGTCAGA
*
68933814 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
68933833 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
68933852 TAAATTGCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:68938104 original size:62 final size:62
Alignment explanation
Indices: 68938028--68938151 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
68938018 GATGAACAGA
68938028 TAACCAACTGTTATGAGCTTCATTCAAAATCATCTGAATCAACTCTGAATTCTTCAGAATGC
1 TAACCAACTGTTATGAGCTTCATTCAAAATCATCTGAATCAACTCTGAATTCTTCAGAATGC
68938090 TAACCAACTGTTATGAGCTTCATTCAAAATCATCTGAATCAACTCTGAATTCTTCAGAATGC
1 TAACCAACTGTTATGAGCTTCATTCAAAATCATCTGAATCAACTCTGAATTCTTCAGAATGC
68938152 ATATTCAGTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32
Consensus pattern (62 bp):
TAACCAACTGTTATGAGCTTCATTCAAAATCATCTGAATCAACTCTGAATTCTTCAGAATGC
Found at i:68951266 original size:50 final size:50
Alignment explanation
Indices: 68951207--68951301 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
68951197 TGCCAAATAA
* *
68951207 ATAGCTGAAGTTGTATCAATCTCGCACACTAAGTGCAAATATATATTTAT
1 ATAGCTGAAGTTATATCAATCTAGCACACTAAGTGCAAATATATATTTAT
* * *
68951257 ATAGCTGAAGTTATCTCGATCTAGCACATTAAGTGCAAATATATA
1 ATAGCTGAAGTTATATCAATCTAGCACACTAAGTGCAAATATATA
68951302 GCCAAAGCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.33
Consensus pattern (50 bp):
ATAGCTGAAGTTATATCAATCTAGCACACTAAGTGCAAATATATATTTAT
Found at i:68951301 original size:42 final size:42
Alignment explanation
Indices: 68951254--68951335 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
68951244 AATATATATT
** * * *
68951254 TATATAGCTGAAGTTATCTCGATCTAGCACATTAAGTGCAAA
1 TATATAGCCAAAGCTATCTCGACCTAGCACACTAAGTGCAAA
*
68951296 TATATAGCCAAAGCTATCTCGACCTCGCACACTAAGTGCA
1 TATATAGCCAAAGCTATCTCGACCTAGCACACTAAGTGCA
68951336 CATAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (42 bp):
TATATAGCCAAAGCTATCTCGACCTAGCACACTAAGTGCAAA
Found at i:68954348 original size:41 final size:42
Alignment explanation
Indices: 68954183--68954475 Score: 144
Period size: 48 Copynumber: 6.6 Consensus size: 42
68954173 AATACCAAAA
* *
68954183 CCATGTCCTC-GACATGGTCTTACATG-GATCTACATACCGATG
1 CCATGTCC-CAGACATGGTCTTACATGAAATCT-CATATCGATG
* * * * * * *
68954225 CCATATCCCAGATATGATATTATACGAAATCTCATGTCGGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCA--T--AT--CGATG
* * *
68954273 CCATGTCCCAGACATGGTCTTACA-CAGGACCTCATATCGATG
1 CCATGTCCCAGACATGGTCTTACATGA-AATCTCATATCGATG
* * *
68954315 -CATGTCCTAGACATGGTCTTACATGAAATCTCATATCAACG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGATG
* * * *
68954356 CCATATCCCAAATATGGTCTTACATGAAATCACATAACGTGGACGATG
1 CCATGTCCCAGACATGGTCTTACATGAAATCTCAT-A--T---CGATG
* * * * *
68954404 CCATATCCCAGATATGGTCTTACACTGGCACACATATCAATGTCAATG
1 CCATGTCCCAGACATGGTCTTACA-T-G-A-A-ATCTC-ATATCGATG
*
68954452 CCATGTCCTAGACATGGTCTTACA
1 CCATGTCCCAGACATGGTCTTACA
68954476 CTAGCTCTCA
Statistics
Matches: 189, Mismatches: 39, Indels: 40
0.71 0.15 0.15
Matches are distributed among these distances:
41 34 0.18
42 55 0.29
43 5 0.03
44 2 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 80 0.42
49 1 0.01
50 1 0.01
51 2 0.01
52 1 0.01
53 3 0.02
54 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
CCATGTCCCAGACATGGTCTTACATGAAATCTCATATCGATG
Found at i:68954421 original size:131 final size:136
Alignment explanation
Indices: 68954183--68954475 Score: 330
Period size: 131 Copynumber: 2.2 Consensus size: 136
68954173 AATACCAAAA
* * * * * *
68954183 CCATGTCCTCGACATGGTCTTACATGGATCTACATACCGATGCCATATCCCAGATATGATATTAT
1 CCATGTCCTAGACATGGTCTTACATGAATCTACATACCAACGCCATATCCCAAATATGATATTAC
* ** * *
68954248 ACGAAATCTCATGTCGGTGCCGATGCCATGTCCCAGACATGGTCTTACACAGG-AC-C-TC-ATA
66 ACGAAATCACATAACGGTGACGATGCCATATCCCAGACATGGTCTTACACAGGCACACATCAATA
*
68954309 TCGATG
131 TCAATG
* * *
68954315 -CATGTCCTAGACATGGTCTTACATGAAATCT-CATATCAACGCCATATCCCAAATATGGTCTTA
1 CCATGTCCTAGACATGGTCTTACATG-AATCTACATACCAACGCCATATCCCAAATATGATATTA
* * *
68954378 CATGAAATCACATAAC-GTGGACGATGCCATATCCCAGATATGGTCTTACACTGGCACACATATC
65 CACGAAATCACATAACGGT-GACGATGCCATATCCCAGACATGGTCTTACACAGGCACAC--ATC
*
68954442 AATGTCAATG
127 AATATCAATG
68954452 CCATGTCCTAGACATGGTCTTACA
1 CCATGTCCTAGACATGGTCTTACA
68954476 CTAGCTCTCA
Statistics
Matches: 133, Mismatches: 19, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
130 2 0.02
131 92 0.69
132 6 0.05
133 1 0.01
136 2 0.02
137 7 0.05
138 23 0.17
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (136 bp):
CCATGTCCTAGACATGGTCTTACATGAATCTACATACCAACGCCATATCCCAAATATGATATTAC
ACGAAATCACATAACGGTGACGATGCCATATCCCAGACATGGTCTTACACAGGCACACATCAATA
TCAATG
Found at i:68957719 original size:51 final size:50
Alignment explanation
Indices: 68957656--68957796 Score: 189
Period size: 49 Copynumber: 2.8 Consensus size: 50
68957646 AGCTAGGTCG
68957656 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTC-GATAACTTTAATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATAA--TTAATCA
* * * * **
68957707 CGTGTGTTGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATAATTAATCA
68957756 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC-CAGATA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATA
68957797 GTTTGGCTAC
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 41 0.53
50 2 0.03
51 35 0.45
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCAGATAATTAATCA
Found at i:68957781 original size:49 final size:50
Alignment explanation
Indices: 68957651--68957790 Score: 176
Period size: 51 Copynumber: 2.8 Consensus size: 50
68957641 TATGTAGCTA
* *
68957651 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACTCGATAACTTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAAC-TT
** * * *
68957702 AATCACGTGTGTTGTACTAAGTGCAGGCTACTACGTGTA-TCAGATAA-TT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTC-GATAACTT
*
68957751 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTAC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTAC
68957791 CAGATAGTTT
Statistics
Matches: 74, Mismatches: 13, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
49 35 0.47
50 2 0.03
51 37 0.50
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.31
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACTCGATAACTT
Found at i:68965575 original size:47 final size:47
Alignment explanation
Indices: 68965524--68965656 Score: 198
Period size: 46 Copynumber: 2.9 Consensus size: 47
68965514 GAATTATGAG
68965524 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCACTTATGGATG-CAA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGTCAA
* *
68965571 GCATCCGAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGTGAA
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGTCAA
* * *
68965618 -CACCCGAGCTCGTTGAGTTACGTTCCGAGTTCATTATGG
1 GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
68965657 GTGAGATTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
46 44 0.56
47 35 0.44
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGTCAA
Found at i:68967826 original size:90 final size:90
Alignment explanation
Indices: 68967673--68967839 Score: 289
Period size: 90 Copynumber: 1.9 Consensus size: 90
68967663 TATTCGTCAA
* *
68967673 AATTATTAACATAATTGCATGCTTTACTGTGCATTTGAGCTTGAATTCCATATATTAACTCCCAT
1 AATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
68967738 TATACCTGTTATGCATATTGGTTAG
66 TATACCTGTTATGCATATTGGTTAG
* *
68967763 AATTATTAACATAATTTCATGCATTATTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
1 AATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
*
68967828 TATACTTGTTAT
66 TATACCTGTTAT
68967840 ATAGCTTAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 72 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.43
Consensus pattern (90 bp):
AATTATTAACATAATTGCATGCATTACTGTACATTTGAGCTTGAATTCCATATATTAACTCCCAT
TATACCTGTTATGCATATTGGTTAG
Found at i:68971834 original size:13 final size:13
Alignment explanation
Indices: 68971816--68971841 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
68971806 AGCAAAACTG
68971816 GTTTAATTTGATT
1 GTTTAATTTGATT
68971829 GTTTAATTTGATT
1 GTTTAATTTGATT
68971842 ACTGATGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (13 bp):
GTTTAATTTGATT
Found at i:68976943 original size:42 final size:41
Alignment explanation
Indices: 68976884--68977002 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 41
68976874 TTAGGGTTAC
*
68976884 TGAGATTACGTGTAAGACCATATCTAGGATATGGAATCAATA
1 TGAGATT-CGTGTAAGACCATATCTGGGATATGGAATCAATA
* * * *
68976926 TGAGACTTCGTGTAAGACCATAGCTGGGCTATTGGTATCGATA
1 TGAGA-TTCGTGTAAGACCATATCTGGGATA-TGGAATCAATA
* * * *
68976969 CGAGATTTCATATAAGACCATATTTGGGATATGG
1 TGAGA-TTCGTGTAAGACCATATCTGGGATATGG
68977003 CATTGGTACA
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 28 0.44
43 35 0.56
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (41 bp):
TGAGATTCGTGTAAGACCATATCTGGGATATGGAATCAATA
Found at i:68980833 original size:96 final size:97
Alignment explanation
Indices: 68980705--68980888 Score: 273
Period size: 96 Copynumber: 1.9 Consensus size: 97
68980695 TTTAAATTTA
* * ** *
68980705 TTTATTGTTCCTTAAGAATATATTGAACCTTTTGATGCGAAGAGAGATGACAGCCAAGCATC-CT
1 TTTATTGTTCCTTAAGAACATATCGAACCTTTTGACACGAAAAGAGATGACAGCCAAGCATCTC-
*
68980769 ACCCCGGTTACTCAGCCCAACATACTCCTAATT
65 ACCCCAGTTACTCAGCCCAACATACTCCTAATT
* *
68980802 TTTATT-TTTCTTAAGAACATATCGAAGCTTTTGACACGAAAAGAGATGACAGCCAAGCATCTCA
1 TTTATTGTTCCTTAAGAACATATCGAACCTTTTGACACGAAAAGAGATGACAGCCAAGCATCTCA
68980866 CCCCAGTTACTCAGCCCAACATA
66 CCCCAGTTACTCAGCCCAACATA
68980889 TTCGTAAAAA
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
96 71 0.91
97 7 0.09
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (97 bp):
TTTATTGTTCCTTAAGAACATATCGAACCTTTTGACACGAAAAGAGATGACAGCCAAGCATCTCA
CCCCAGTTACTCAGCCCAACATACTCCTAATT
Found at i:68982523 original size:27 final size:27
Alignment explanation
Indices: 68982475--68982579 Score: 135
Period size: 27 Copynumber: 3.9 Consensus size: 27
68982465 GCGAGGCTGC
* *
68982475 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
68982502 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
68982528 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
68982555 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
68982580 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 8 0.11
27 60 0.85
28 3 0.04
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:68982719 original size:26 final size:27
Alignment explanation
Indices: 68982683--68982758 Score: 91
Period size: 26 Copynumber: 2.8 Consensus size: 27
68982673 CAAAAGTAAC
* *
68982683 CCTAGGGGTATAATGGTAATTTTGC-A
1 CCTAGGGGTATAATAGTAATTTTCCAA
*
68982709 CCTAGGGGTATAACAGTAATTTTCCATA
1 CCTAGGGGTATAATAGTAATTTTCCA-A
* *
68982737 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATAATAGTAATTT
68982759 AGCTGCTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 22 0.52
28 20 0.48
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATAGTAATTTTCCAA
Found at i:68985071 original size:27 final size:26
Alignment explanation
Indices: 68985040--68985217 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
68985030 TAAATTGTAC
68985040 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
68985067 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
68985093 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
68985121 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
68985149 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
68985176 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
68985203 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
68985218 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:68985156 original size:82 final size:81
Alignment explanation
Indices: 68985041--68985196 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
68985031 AAATTGTACA
* * *
68985041 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
68985105 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
68985122 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
68985187 TGCGAGTTGA
65 TGCGAATTGA
68985197 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:68985208 original size:82 final size:81
Alignment explanation
Indices: 68985037--68985217 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
68985027 GATTAAATTG
* * *
68985037 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
68985102 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
68985118 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
68985182 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
68985200 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
68985218 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:68985228 original size:27 final size:27
Alignment explanation
Indices: 68985122--68985228 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
68985112 TGACCATGCG
* * *
68985122 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
68985150 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
68985177 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
68985204 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
68985229 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:68987463 original size:26 final size:26
Alignment explanation
Indices: 68987432--68987539 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
68987422 TGAAATGCCC
*
68987432 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
68987458 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
68987484 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
68987510 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
68987536 ATCA
1 ATCA
68987540 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:68988249 original size:15 final size:15
Alignment explanation
Indices: 68988231--68988307 Score: 65
Period size: 15 Copynumber: 5.3 Consensus size: 15
68988221 ATCCAAAAAC
68988231 AAAATAATAAATAAT
1 AAAATAATAAATAAT
68988246 AAAATAAGGT-AA-AAT
1 AAAATAA--TAAATAAT
* *
68988261 AAAATAAAAAATACT
1 AAAATAATAAATAAT
*
68988276 AATAA-AAT-GA-AAT
1 AA-AATAATAAATAAT
68988289 AAAATAATAAATAAT
1 AAAATAATAAATAAT
68988304 AAAA
1 AAAA
68988308 ATTAAGAAAA
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
12 2 0.04
13 7 0.15
14 4 0.08
15 30 0.62
16 4 0.08
17 1 0.02
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.22
Consensus pattern (15 bp):
AAAATAATAAATAAT
Found at i:68988279 original size:18 final size:16
Alignment explanation
Indices: 68988239--68988326 Score: 63
Period size: 18 Copynumber: 5.2 Consensus size: 16
68988229 ACAAAATAAT
**
68988239 AAATAATAAAATAAGG
1 AAATAATAAAATAAAA
*
68988255 TAA-AATAAAATAAAA
1 AAATAATAAAATAAAA
68988270 AATACTAATAAAATGAAATA
1 AA-A-TAATAAAAT-AAA-A
68988290 AAATAAT-AAATAATAA
1 AAATAATAAAATAA-AA
*
68988306 AAATTAAGAAAAGTAAAA
1 AAA-TAATAAAA-TAAAA
68988324 AAA
1 AAA
68988327 ATAAAGGTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 16
0.73 0.06 0.20
Matches are distributed among these distances:
15 11 0.19
16 9 0.16
17 8 0.14
18 20 0.34
19 7 0.12
20 3 0.05
ACGTcount: A:0.73, C:0.01, G:0.06, T:0.20
Consensus pattern (16 bp):
AAATAATAAAATAAAA
Found at i:68989745 original size:33 final size:33
Alignment explanation
Indices: 68989695--68989770 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
68989685 TTGTTTCCTT
* *
68989695 TTGGAAA-CAAGAGTTTGCCATAAAATTTGCTG
1 TTGGAAATCAACAGTTTGCCATAAAATCTGCTG
***
68989727 TTGGAAATCAACAGTTTGCCATTGTATCTGCTG
1 TTGGAAATCAACAGTTTGCCATAAAATCTGCTG
68989760 TTGGAAATCAA
1 TTGGAAATCAA
68989771 GCATATTAGC
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
32 7 0.18
33 31 0.82
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (33 bp):
TTGGAAATCAACAGTTTGCCATAAAATCTGCTG
Found at i:68992222 original size:14 final size:13
Alignment explanation
Indices: 68992186--68992223 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
68992176 AAAATTAAAT
68992186 CTAAATAATTATC
1 CTAAATAATTATC
*
68992199 CTTAATAATTATC
1 CTAAATAATTATC
68992212 CTAATATAATTA
1 CTAA-ATAATTA
68992224 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:68992390 original size:17 final size:18
Alignment explanation
Indices: 68992359--68992392 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68992349 AATTTGCAAT
68992359 TTTTGCCCTTAAATTTAC
1 TTTTGCCCTTAAATTTAC
*
68992377 TTTTG-CCTTCAATTTA
1 TTTTGCCCTTAAATTTA
68992393 GTCCCTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.21, C:0.21, G:0.06, T:0.53
Consensus pattern (18 bp):
TTTTGCCCTTAAATTTAC
Found at i:68998616 original size:79 final size:82
Alignment explanation
Indices: 68998505--68998689 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
68998495 GCTACTCGTT
* *
68998505 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
68998568 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACGTAGCA
* * **
68998585 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGTACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
68998648 GATATGGTCACGTAGCA
66 GATATAGTAACGTAGCA
68998665 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68998690 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACGTAGCA
Found at i:68998627 original size:39 final size:40
Alignment explanation
Indices: 68998505--68998689 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
68998495 GCTACTCGTT
*
68998505 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
68998545 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
68998585 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
68998624 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACGTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
68998665 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
68998690 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 79 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:69003421 original size:93 final size:93
Alignment explanation
Indices: 69003264--69003436 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
69003254 GGGATATTTG
* * * * *
69003264 GGCATCCGAACTCGTTGAGTTGAGTCTGGGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
69003329 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCAAGTTCGTGAGATGTAACTA
* * **
69003357 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGTGCTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
*
69003422 TTGAGTCCGAGTTCG
66 TTGAGTCCAAGTTCG
69003437 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCATTGAG
TTGAGTCCAAGTTCGTGAGATGTAACTA
Found at i:69012122 original size:24 final size:24
Alignment explanation
Indices: 69012072--69012125 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
69012062 AATCGAATTT
*
69012072 GCACACATAGTGCTCGTCACACTC
1 GCACACATAGTGCTAGTCACACTC
69012096 GCACACATAGTGCCATAGT-ACAC-C
1 GCACACATAGTG-C-TAGTCACACTC
69012120 GCACAC
1 GCACAC
69012126 TCAGTGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
24 19 0.70
25 5 0.19
26 3 0.11
ACGTcount: A:0.30, C:0.37, G:0.17, T:0.17
Consensus pattern (24 bp):
GCACACATAGTGCTAGTCACACTC
Found at i:69019116 original size:30 final size:30
Alignment explanation
Indices: 69019080--69019139 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
69019070 TATGTAAGAA
* *
69019080 ATGTCCTTTGATGATTTGAGGTTATTGTTT
1 ATGTCCTTTGATGATTCGAGGTTACTGTTT
69019110 ATGTCCTTTGATGATTCGAGGTTACTGTTT
1 ATGTCCTTTGATGATTCGAGGTTACTGTTT
69019140 TTCGTTTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.17, C:0.10, G:0.23, T:0.50
Consensus pattern (30 bp):
ATGTCCTTTGATGATTCGAGGTTACTGTTT
Found at i:69022480 original size:45 final size:45
Alignment explanation
Indices: 69022425--69022557 Score: 117
Period size: 45 Copynumber: 3.0 Consensus size: 45
69022415 TAGGATTCTA
* * *
69022425 ATATGTGTTTTCG-AGTAAGACCCCATCTGGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTA-TAAGACCACATCTGGGACATTGACATCGAT
* * *
69022470 ATATTTGTTTTCGTATAGGACCACGTCTGGGACATTGACATCGAT
1 ATATGTGTTTTCGTATAAGACCACATCTGGGACATTGACATCGAT
* * * ** * *
69022515 CTATGTAG-TTACGTGTAAGACCATGTCTGGCACATTGGCATCG
1 ATATGT-GTTTTCGTATAAGACCACATCTGGGACATTGACATCG
69022558 TATTTGATCC
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
45 70 0.97
46 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (45 bp):
ATATGTGTTTTCGTATAAGACCACATCTGGGACATTGACATCGAT
Found at i:69024991 original size:43 final size:42
Alignment explanation
Indices: 69024902--69025015 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
69024892 TGAGTTTACG
* * *
69024902 TGTAAGACCATATCTGGGATATGGCATCGACATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATTGACATGAGATTCCA
* * * **
69024944 TGTAAGACCATAGCTAGGCTATTGGCATTGATTTGAGATTCCA
1 TGTAAGACCATATCTGGGATA-TGGCATTGACATGAGATTCCA
69024987 TGTAAGACCATATCTGGGATATGGCATTG
1 TGTAAGACCATATCTGGGATATGGCATTG
69025016 GTATGGTACT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 26 0.43
43 34 0.57
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATTGACATGAGATTCCA
Found at i:69028173 original size:13 final size:13
Alignment explanation
Indices: 69028155--69028179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69028145 ATTTCCATTG
69028155 GAATGAATTTTTA
1 GAATGAATTTTTA
69028168 GAATGAATTTTT
1 GAATGAATTTTT
69028180 GACGATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
GAATGAATTTTTA
Found at i:69031968 original size:29 final size:29
Alignment explanation
Indices: 69031936--69031992 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
69031926 ACTCCCAAAC
69031936 ACACCCAAAACACTTCTAGCCATTAAAAT
1 ACACCCAAAACACTTCTAGCCATTAAAAT
**
69031965 ACACCTGAAACACTTCTAGCCATTAAAA
1 ACACCCAAAACACTTCTAGCCATTAAAA
69031993 CATACATGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.44, C:0.30, G:0.05, T:0.21
Consensus pattern (29 bp):
ACACCCAAAACACTTCTAGCCATTAAAAT
Found at i:69036871 original size:20 final size:21
Alignment explanation
Indices: 69036827--69036872 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
69036817 TAGTCCTTTA
69036827 TCTACAGTAGTCTCAGTATTT
1 TCTACAGTAGTCTCAGTATTT
*
69036848 TCTACAGTAGTCTTAGTA-TT
1 TCTACAGTAGTCTCAGTATTT
69036868 TCTAC
1 TCTAC
69036873 CTACTATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.24, C:0.20, G:0.13, T:0.43
Consensus pattern (21 bp):
TCTACAGTAGTCTCAGTATTT
Found at i:69039452 original size:24 final size:24
Alignment explanation
Indices: 69039433--69039503 Score: 99
Period size: 24 Copynumber: 3.0 Consensus size: 24
69039423 TCTCTCCATA
*
69039433 ATCCTCTCATTGAGTTT-CTCCCCC
1 ATCCTCTCATTGA-TTTCCTCCACC
*
69039457 ATCCTCTCATTAATTTCCTCCACC
1 ATCCTCTCATTGATTTCCTCCACC
*
69039481 ATCCTCTCCTTGATTTCCTCCAC
1 ATCCTCTCATTGATTTCCTCCAC
69039504 ATATCACTCC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
23 3 0.07
24 39 0.93
ACGTcount: A:0.15, C:0.42, G:0.04, T:0.38
Consensus pattern (24 bp):
ATCCTCTCATTGATTTCCTCCACC
Found at i:69046490 original size:34 final size:34
Alignment explanation
Indices: 69046452--69046546 Score: 92
Period size: 34 Copynumber: 2.8 Consensus size: 34
69046442 TTGGACGGTC
*
69046452 TGGGCTTAAGCCCATATCAGTAGCAATATCAGTG
1 TGGGCTTAAGCCCATATCAGTAGCAATAACAGTG
* *
69046486 TGGGCCTT-AGCCCAT-TACATTAGCAGTAACAGTG
1 TGGG-CTTAAGCCCATAT-CAGTAGCAATAACAGTG
69046520 TGGGCTTTAA-CCCA-ATTCAGTA-CAATA
1 TGGGC-TTAAGCCCATA-TCAGTAGCAATA
69046547 CCAAAAATGC
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
33 6 0.12
34 39 0.78
35 5 0.10
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (34 bp):
TGGGCTTAAGCCCATATCAGTAGCAATAACAGTG
Found at i:69047058 original size:12 final size:12
Alignment explanation
Indices: 69047041--69047070 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
69047031 AATGGCCTTG
69047041 GCCGTGTGGTCT
1 GCCGTGTGGTCT
69047053 GCCGTGTGGTCT
1 GCCGTGTGGTCT
69047065 GCCGTG
1 GCCGTG
69047071 CGGGGCCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.27, G:0.43, T:0.30
Consensus pattern (12 bp):
GCCGTGTGGTCT
Found at i:69054749 original size:40 final size:40
Alignment explanation
Indices: 69054694--69054875 Score: 280
Period size: 40 Copynumber: 4.6 Consensus size: 40
69054684 TATTCAGATG
69054694 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
69054734 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
*
69054774 ATATCCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
* * *
69054814 ATATTCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCT-AG-TGACT
*
69054854 ATATCC-GGCTAATTCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
69054876 TACTTGGGTT
Statistics
Matches: 133, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 15 0.11
40 116 0.87
41 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
Found at i:69056964 original size:20 final size:20
Alignment explanation
Indices: 69056939--69056976 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69056929 AAAACAATAA
*
69056939 ACCATTTCATCTACTTATTT
1 ACCATTCCATCTACTTATTT
*
69056959 ACCATTCCATTTACTTAT
1 ACCATTCCATCTACTTAT
69056977 CATAAGCTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATCTACTTATTT
Found at i:69058405 original size:14 final size:16
Alignment explanation
Indices: 69058372--69058408 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
69058362 TTTTAATTAG
*
69058372 TATTATGAGATAAAAT
1 TATTATTAGATAAAAT
69058388 TATTATTAGA-AAAA-
1 TATTATTAGATAAAAT
69058402 TATTATT
1 TATTATT
69058409 GTATGTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 4 0.20
16 9 0.45
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (16 bp):
TATTATTAGATAAAAT
Found at i:69058707 original size:11 final size:11
Alignment explanation
Indices: 69058688--69058717 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69058678 CCAGTGGCTA
*
69058688 AGGATGCTTGG
1 AGGACGCTTGG
69058699 AGGACGCTTGG
1 AGGACGCTTGG
69058710 AGGACGCT
1 AGGACGCT
69058718 AGGGAGGTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.43, T:0.20
Consensus pattern (11 bp):
AGGACGCTTGG
Found at i:69061580 original size:49 final size:47
Alignment explanation
Indices: 69061376--69061634 Score: 365
Period size: 47 Copynumber: 5.5 Consensus size: 47
69061366 CCCTTCGGGA
* * * * * * *
69061376 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69061423 CCTGTCACATATATACACATTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
69061470 CTTATCACATATATGCACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
69061517 CTTATCACACATATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69061564 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
69061613 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
69061635 TTGGCTGAAT
Statistics
Matches: 189, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
47 145 0.77
49 44 0.23
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:69063032 original size:13 final size:13
Alignment explanation
Indices: 69063014--69063038 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69063004 TACTAAATTT
69063014 TCATGGATTCAAA
1 TCATGGATTCAAA
69063027 TCATGGATTCAA
1 TCATGGATTCAA
69063039 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:69064617 original size:25 final size:25
Alignment explanation
Indices: 69064588--69064635 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69064578 TTATAATATG
** *
69064588 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
69064613 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
69064636 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:69064794 original size:25 final size:25
Alignment explanation
Indices: 69064766--69064835 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
69064756 GAGGAAGTGC
*
69064766 AAAAGGGCTATGCCCCAGTTTACCGA
1 AAAAGGGCTTTGCCCCAGTTTACC-A
* *
69064792 AAAA-GGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
69064816 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
69064836 ATTAAAGAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 5 0.13
25 30 0.77
26 4 0.10
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:69065094 original size:31 final size:31
Alignment explanation
Indices: 69065056--69065139 Score: 109
Period size: 31 Copynumber: 2.7 Consensus size: 31
69065046 CATTTGTAGT
69065056 AAAGGCTTCGGCCCAGTGATAT-GAGTAATGA
1 AAAGGCTTCGGCCCAGTGATATGGA-TAATGA
* * * *
69065087 AAAGGCTTCAGCTCAGTGACATGGATAATGT
1 AAAGGCTTCGGCCCAGTGATATGGATAATGA
69065118 AAAGGCTTCGGCCCAGTG-TATG
1 AAAGGCTTCGGCCCAGTGATATG
69065140 CTGAGATTGA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
30 3 0.07
31 40 0.89
32 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGGATAATGA
Found at i:69067265 original size:32 final size:32
Alignment explanation
Indices: 69067228--69067295 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
69067218 CTCACTTTAC
69067228 TACTGAATAGGGCTTGGCCCAGACTGTACGGA
1 TACTGAATAGGGCTTGGCCCAGACTGTACGGA
* *
69067260 TACTGAATAGGGCTTGGCCCAGATTGTACTGA
1 TACTGAATAGGGCTTGGCCCAGACTGTACGGA
69067292 TACT
1 TACT
69067296 ATGTTCTTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (32 bp):
TACTGAATAGGGCTTGGCCCAGACTGTACGGA
Found at i:69074440 original size:11 final size:11
Alignment explanation
Indices: 69074404--69074459 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
69074394 CATGGTATGT
69074404 ATGATATGCAC
1 ATGATATGCAC
* *
69074415 ATGACATG--T
1 ATGATATGCAC
69074424 ATGATATGCAC
1 ATGATATGCAC
*
69074435 ATGATATG--T
1 ATGATATGCAC
69074444 ATGATATGCAC
1 ATGATATGCAC
69074455 ATGAT
1 ATGAT
69074460 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:69074459 original size:20 final size:20
Alignment explanation
Indices: 69074393--69074459 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
69074383 ATTTTGATAA
*
69074393 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
69074413 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
69074433 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
69074453 ACATGAT
1 ACATGAT
69074460 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:69074598 original size:25 final size:23
Alignment explanation
Indices: 69074512--69074602 Score: 139
Period size: 23 Copynumber: 3.9 Consensus size: 23
69074502 GAAGTGAAAG
69074512 AGGGCTTATGCCCCAGTTATTAA
1 AGGGCTTATGCCCCAGTTATTAA
69074535 AGGGCTTATGCCCCAGTTATTAA
1 AGGGCTTATGCCCCAGTTATTAA
69074558 AGGGCTTATGCCCCAGTTATTCAA
1 AGGGCTTATGCCCCAGTTATT-AA
*
69074582 AGAGGC-TAGGCCTCCAGTTAT
1 AG-GGCTTATGCC-CCAGTTAT
69074603 ATGATAAAGC
Statistics
Matches: 64, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
23 44 0.69
24 9 0.14
25 11 0.17
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (23 bp):
AGGGCTTATGCCCCAGTTATTAA
Found at i:69074831 original size:31 final size:31
Alignment explanation
Indices: 69074796--69074859 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
69074786 CGTTTACAGT
69074796 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
69074827 AAAGGCTTCGGCCCAGTGTTGTGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
69074858 AA
1 AA
69074860 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:69080139 original size:32 final size:32
Alignment explanation
Indices: 69080102--69080170 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
69080092 CTCACTCTAC
69080102 TACTGAATAGGGCTTGGACCAGACTGTACGGA
1 TACTGAATAGGGCTTGGACCAGACTGTACGGA
* *
69080134 TACTGAATAGGGCTTGGCCCAGACTGTACTGA
1 TACTGAATAGGGCTTGGACCAGACTGTACGGA
69080166 TACTG
1 TACTG
69080171 TTTTATTCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (32 bp):
TACTGAATAGGGCTTGGACCAGACTGTACGGA
Found at i:69082852 original size:34 final size:34
Alignment explanation
Indices: 69082813--69082888 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
69082803 TAGGGTTTTT
*
69082813 AGGTTTTGGGTTTTGCTAAAATAA-TTTAGGTTTA
1 AGGTTTT-GGTTTTGCTAAAATAAGTTAAGGTTTA
* *
69082847 AGGTTTATGTTTTTGTTAAAATAAGTTAAGGTTTA
1 AGGTTT-TGGTTTTGCTAAAATAAGTTAAGGTTTA
*
69082882 GGGTTTT
1 AGGTTTT
69082889 AGTGGATTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
34 21 0.58
35 15 0.42
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (34 bp):
AGGTTTTGGTTTTGCTAAAATAAGTTAAGGTTTA
Found at i:69082977 original size:33 final size:32
Alignment explanation
Indices: 69082932--69083061 Score: 152
Period size: 34 Copynumber: 3.9 Consensus size: 32
69082922 TATTTTGTAA
69082932 AAATTAATTAAATTAGGGTTTATGGTTTTAAAT
1 AAATTAATTAAATTAGGGTTTA-GGTTTTAAAT
* *
69082965 AAATTAAGTAAATTAGTGTTTAAGGGTTTTAAAT
1 AAATTAATTAAATTAGGGTTT-A-GGTTTTAAAT
* * *
69082999 AAATTAATTAAATTAGGATTTAGGGTTTAAGGTT
1 AAATTAATTAAATTAGGGTTTAGGTTTTAA--AT
*
69083033 AAACTTAATTAAATTAGGGTTTAGTTTTT
1 AAA-TTAATTAAATTAGGGTTTAGGTTTT
69083062 TTTTTAAAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
32 7 0.09
33 20 0.24
34 33 0.40
35 22 0.27
ACGTcount: A:0.38, C:0.01, G:0.17, T:0.44
Consensus pattern (32 bp):
AAATTAATTAAATTAGGGTTTAGGTTTTAAAT
Found at i:69083345 original size:126 final size:126
Alignment explanation
Indices: 69083113--69083366 Score: 348
Period size: 126 Copynumber: 2.0 Consensus size: 126
69083103 ACTATTTTTA
* * *
69083113 TCCTGAAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAATGTTTCAAGCAAGA
1 TCCTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAAGA
* * ** *
69083178 CGCATTGTATGCAAAATTACTGAAAAAAGCTCCCATGTGGATGCTCTTTTTCTAGAGCAGT
66 CGCAATGTATGCAAAATTACTAAAAAAAGCTCCCACATGGATGCTCTTTTTCTAAAGCAGT
* * * *
69083239 TCCTGAAAAAATAATTTTGAGAAGATATTTCTGAGCAAATAGTGTCAAAAACGCTTCAAGCAGGA
1 TCCTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAAGA
* * * *
69083304 TGCAATGTCA-GCAAAATTTCTAAAAAAAGCTCTCACATGGATGCTCTTTTTCTAAAGTAGT
66 CGCAATGT-ATGCAAAATTACTAAAAAAAGCTCCCACATGGATGCTCTTTTTCTAAAGCAGT
69083365 TC
1 TC
69083367 ATGTTTGGCC
Statistics
Matches: 111, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 110 0.99
127 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (126 bp):
TCCTGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAAGA
CGCAATGTATGCAAAATTACTAAAAAAAGCTCCCACATGGATGCTCTTTTTCTAAAGCAGT
Found at i:69094726 original size:38 final size:39
Alignment explanation
Indices: 69094670--69094789 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
69094660 ATGCAAGACA
69094670 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
69094709 CTGGAAATG-ATCCGGGCTAAAATCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
69094747 CTGGAAATGTGTCCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
69094786 CTGG
1 CTGG
69094790 TGCTGGTAAT
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 37 0.49
39 39 0.51
ACGTcount: A:0.21, C:0.26, G:0.32, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:69098172 original size:28 final size:27
Alignment explanation
Indices: 69098115--69098265 Score: 248
Period size: 27 Copynumber: 5.5 Consensus size: 27
69098105 TAAATTGTGC
*
69098115 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
69098142 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
69098170 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
69098197 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
*
69098225 AGCACTAAGTGTGCGAGTTGACTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
69098252 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
69098266 AGACTTAATA
Statistics
Matches: 117, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 64 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:69098179 original size:55 final size:55
Alignment explanation
Indices: 69098115--69098265 Score: 266
Period size: 55 Copynumber: 2.7 Consensus size: 55
69098105 TAAATTGTGC
*
69098115 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
69098170 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
69098225 AGCACTAAGTGTGCGAGTTGACTATATAGCACTGAGTGTGC
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGC
69098266 AGACTTAATA
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:69101115 original size:25 final size:23
Alignment explanation
Indices: 69101058--69101115 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
69101048 AAGAACTTCT
* *
69101058 ATTTTATTAAAAATATAAAATTA
1 ATTTTATTAAAAATAAAAAAATA
69101081 ATTTAATATTAAAATATAAAAAAATA
1 ATTT--TATTAAAA-ATAAAAAAATA
69101107 ACTTTTATT
1 A-TTTTATT
69101116 TTATTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 4 0.14
25 12 0.41
26 10 0.34
27 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTTATTAAAAATAAAAAAATA
Found at i:69101513 original size:18 final size:18
Alignment explanation
Indices: 69101486--69101527 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
69101476 GACTGGGAAA
*
69101486 AGGA-ACATATAAGGGTT
1 AGGATACATATAAGGGCT
69101503 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
69101521 AGGATAC
1 AGGATAC
69101528 GCACCTGGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.40, C:0.10, G:0.29, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:69103104 original size:55 final size:52
Alignment explanation
Indices: 69103020--69103140 Score: 188
Period size: 55 Copynumber: 2.3 Consensus size: 52
69103010 AAAAAATTAT
* *
69103020 AAAATAAAAATTAATTAAAATTACATAAATGAAAAAAATATTAAATAATATTCAA
1 AAAATTAAAATTAATTAAAATTAAATAAATG--AAAAATATTAAATAATATTC-A
*
69103075 AAAATTAAAATTAATTAAAATTAAATAAATGAAAAATTTTAAATAATATTCA
1 AAAATTAAAATTAATTAAAATTAAATAAATGAAAAATATTAAATAATATTCA
69103127 AAAATTAAAATTAA
1 AAAATTAAAATTAA
69103141 CCCTTACCAT
Statistics
Matches: 63, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
52 15 0.24
53 19 0.30
55 29 0.46
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (52 bp):
AAAATTAAAATTAATTAAAATTAAATAAATGAAAAATATTAAATAATATTCA
Found at i:69105847 original size:20 final size:20
Alignment explanation
Indices: 69105822--69105859 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
69105812 TAGGGACTAG
* *
69105822 ATTAAATTAATCTCTTTATT
1 ATTAAATAAATCTATTTATT
69105842 ATTAAATAAATCTATTTA
1 ATTAAATAAATCTATTTA
69105860 GTCTTTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTAAATAAATCTATTTATT
Found at i:69106906 original size:17 final size:18
Alignment explanation
Indices: 69106880--69106914 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
69106870 AATTGGATGG
69106880 TTTTAGATTTAAACCATT
1 TTTTAGATTTAAACCATT
*
69106898 TTTTA-ATTTAAATCATT
1 TTTTAGATTTAAACCATT
69106915 CATGTTCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.34, C:0.09, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTTAGATTTAAACCATT
Found at i:69110426 original size:20 final size:21
Alignment explanation
Indices: 69110401--69110443 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
69110391 TAATTAAAAA
* *
69110401 AAATTAATTA-AAACTCTAAT
1 AAATTAAATATAAACTATAAT
69110421 AAATTAAATATAAACTATAAT
1 AAATTAAATATAAACTATAAT
69110442 AA
1 AA
69110444 CTAGTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (21 bp):
AAATTAAATATAAACTATAAT
Found at i:69110622 original size:23 final size:25
Alignment explanation
Indices: 69110584--69110631 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
69110574 AAACATTGGG
* *
69110584 TAATTTATTCCTCATGTTAGTACAT
1 TAATTTATTCCTCATGATAATACAT
69110609 TAATTT-TT-CTCATGATAATACAT
1 TAATTTATTCCTCATGATAATACAT
69110632 ATATTACATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 13 0.62
24 2 0.10
25 6 0.29
ACGTcount: A:0.31, C:0.15, G:0.06, T:0.48
Consensus pattern (25 bp):
TAATTTATTCCTCATGATAATACAT
Found at i:69111843 original size:23 final size:24
Alignment explanation
Indices: 69111794--69111844 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
69111784 TGGAATTGTG
* **
69111794 GAAATCAAAAGAAACTAAAAGGTT
1 GAAATCAAAAGAAACAAAAAGAAT
69111818 GAAATCAAAAGAAA-AAAAAGAAT
1 GAAATCAAAAGAAACAAAAAGAAT
69111841 GAAA
1 GAAA
69111845 CAACATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.67, C:0.06, G:0.16, T:0.12
Consensus pattern (24 bp):
GAAATCAAAAGAAACAAAAAGAAT
Found at i:69114122 original size:39 final size:39
Alignment explanation
Indices: 69114078--69114198 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
69114068 AATTATGTTA
* * *
69114078 CCAGCACAAAGCCTGCGGGACTTTAGCTCGGATAAATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
69114117 CCAGCACGAAGCTTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
69114156 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
69114195 CCAG
1 CCAG
69114199 TGTCTTGCTT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:69116363 original size:138 final size:138
Alignment explanation
Indices: 69116106--69116421 Score: 411
Period size: 138 Copynumber: 2.3 Consensus size: 138
69116096 GAGACATAAT
*
69116106 CAAACTTTTTGATGCAAAACGAGATGACAACCCAAGCA-CTCATTCCAGGAACTCAATTTCACAT
1 CAAACCTTTTGATGCAAAACGAGATGACAACCCAAGCACCTCATTCCAGGAACTCAATTTCACAT
* ** * *
69116170 GTCCCTAATCAATTTATTTCTCCTTTCTCAAGGTAGCTCGGTTAGTGGAACGTTACAAGTTTCGG
66 GTCCCTAATCAATTTATTTCTCCTTTCTCAAGGCAGCTCGGTTAGCAGAACGTTACAAGCTTCAG
*
69116235 TTCATCAC
131 CTCATCAC
* * * ** * *
69116243 CAAACCTTTTGATGCGAAACAAGATGGCAACCCAAGCACCTCA-TCTTGGTTACTCAATTTCATA
1 CAAACCTTTTGATGCAAAACGAGATGACAACCCAAGCACCTCATTCCAGG-AACTCAATTTCACA
* ** * **
69116307 TGTCCTTAATTGATTTATTTCTCCTTTCTTAAGGCAGCTCGGTTAGCAGAGTGTTACAAGCTTCA
65 TGTCCCTAATCAATTTATTTCTCCTTTCTCAAGGCAGCTCGGTTAGCAGAACGTTACAAGCTTCA
*
69116372 GCTCGTCAC
130 GCTCATCAC
*
69116381 CAAACCTTTTGACGCAAAACGAGATGACAACCCAAGCACCT
1 CAAACCTTTTGATGCAAAACGAGATGACAACCCAAGCACCT
69116422 TATATGGTTG
Statistics
Matches: 152, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
137 38 0.25
138 114 0.75
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (138 bp):
CAAACCTTTTGATGCAAAACGAGATGACAACCCAAGCACCTCATTCCAGGAACTCAATTTCACAT
GTCCCTAATCAATTTATTTCTCCTTTCTCAAGGCAGCTCGGTTAGCAGAACGTTACAAGCTTCAG
CTCATCAC
Found at i:69120085 original size:42 final size:42
Alignment explanation
Indices: 69119944--69120073 Score: 131
Period size: 42 Copynumber: 3.1 Consensus size: 42
69119934 AAGGCTGAAT
* * * *
69119944 AGAAGCTC-ATGAGAGCTAAACAAAAACCC-TAAGGGTTGAAC
1 AGAAGCTCAAT-AGAGCTGAACGAAAACCCATAAGAGTTAAAC
* * * *
69119985 AGAAGCT-TATAAAAGCTGAACGGAAACCCATAAGGGTTAAAC
1 AGAAGCTCAAT-AGAGCTGAACGAAAACCCATAAGAGTTAAAC
* *
69120027 AGAAGCTCAATAGAGCTGAACGAAAACTCATATGAGTTAAAC
1 AGAAGCTCAATAGAGCTGAACGAAAACCCATAAGAGTTAAAC
69120069 AGAAG
1 AGAAG
69120074 TTCATGCGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
41 23 0.31
42 49 0.66
43 2 0.03
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.16
Consensus pattern (42 bp):
AGAAGCTCAATAGAGCTGAACGAAAACCCATAAGAGTTAAAC
Found at i:69120749 original size:13 final size:13
Alignment explanation
Indices: 69120731--69120756 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69120721 ACAACAAAAG
69120731 TAAAGCTCTAAAT
1 TAAAGCTCTAAAT
69120744 TAAAGCTCTAAAT
1 TAAAGCTCTAAAT
69120757 CCATGTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TAAAGCTCTAAAT
Found at i:69125911 original size:30 final size:29
Alignment explanation
Indices: 69125875--69125935 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
69125865 AATCGGAAGT
*
69125875 TTTGGCACTAAGTGTGCAGTTTAAACTAGC
1 TTTGGCACTAAGTGTGCAATTT-AACTAGC
69125905 TTTGGCACTAAGTGTGCAATTTAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAACTAGC
69125934 TT
1 TT
69125936 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCAATTTAACTAGC
Found at i:69132042 original size:31 final size:31
Alignment explanation
Indices: 69131998--69132081 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
69131988 TTAGTCTTGA
*
69131998 CATAT-ACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
69132028 CATATCGCTGGGCCGAAGTCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
69132059 CATATCATTGGGACGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
69132082 ACTGTAAACG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
30 5 0.11
31 41 0.89
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:69132277 original size:25 final size:24
Alignment explanation
Indices: 69132249--69132316 Score: 100
Period size: 24 Copynumber: 2.8 Consensus size: 24
69132239 CTCTTTTAAT
69132249 AACTGGGGCAAAGCCCTTTCTGATA
1 AACTGGGGCAAAGCCCTTTC-GATA
* *
69132274 AACTGGGGCAAAGTCCTTTCGGTA
1 AACTGGGGCAAAGCCCTTTCGATA
*
69132298 AACTGGGGCATAGCCCTTT
1 AACTGGGGCAAAGCCCTTT
69132317 TAGCACTTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 20 0.51
25 19 0.49
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (24 bp):
AACTGGGGCAAAGCCCTTTCGATA
Found at i:69132552 original size:27 final size:27
Alignment explanation
Indices: 69132522--69132678 Score: 108
Period size: 27 Copynumber: 5.8 Consensus size: 27
69132512 GGCAAAATGG
69132522 TAATTTTACCGC-ACAAGGGTATCTCGA
1 TAATTTTACC-CTACAAGGGTATCTCGA
* * * *
69132549 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAAGGGTATCTCGA
*
69132576 T-ATTTCTACCCTACAAGGGTATTTC-A
1 TAATTT-TACCCTACAAGGGTATCTCGA
* * *
69132602 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTTTACCCTACAAGGGTATCTCGA
* * *
69132629 GTAATTCTACCCTACAGGGGTATTTC-A
1 -TAATTTTACCCTACAAGGGTATCTCGA
* * *
69132656 GTCATTCTACCCTACAGGGGTAT
1 -TAATTTTACCCTACAAGGGTAT
69132679 TTCGGTATTT
Statistics
Matches: 116, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
26 4 0.03
27 109 0.94
28 3 0.03
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.33
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATCTCGA
Found at i:69132676 original size:54 final size:54
Alignment explanation
Indices: 69132521--69132681 Score: 236
Period size: 54 Copynumber: 3.0 Consensus size: 54
69132511 GGGCAAAATG
* * *
69132521 GTAATTTTACCGC-ACAAGGGTATCTC-GATAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACC-CTACAAGGGTATTTCAG-TAATTCTACCCTACAGGGGTATTTCA
*
69132575 GTATTTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
* *
69132629 GTAATTCTACCCTACAGGGGTATTTCAGTCATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTC
69132682 GGTATTTACA
Statistics
Matches: 98, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
53 1 0.01
54 96 0.98
55 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCA
Found at i:69132679 original size:27 final size:27
Alignment explanation
Indices: 69132549--69132681 Score: 230
Period size: 27 Copynumber: 4.9 Consensus size: 27
69132539 GGTATCTCGA
*
69132549 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAG
* *
69132576 TATTTCTACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
69132603 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
69132630 TAATTCTACCCTACAGGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCAG
*
69132657 TCATTCTACCCTACAGGGGTATTTC
1 TAATTCTACCCTACAGGGGTATTTC
69132682 GGTATTTACA
Statistics
Matches: 100, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAG
Found at i:69132720 original size:27 final size:27
Alignment explanation
Indices: 69132686--69132810 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
69132676 TATTTCGGTA
69132686 TTTACAAATCAAGGGTATTTTAGTAAT
1 TTTACAAATCAAGGGTATTTTAGTAAT
* *
69132713 TTTACAAA-CTAGGGGTATTTTGGTAAT
1 TTTACAAATC-AAGGGTATTTTAGTAAT
** * *
69132740 TTTACTGATCGAGGGTATTTTGGTAAT
1 TTTACAAATCAAGGGTATTTTAGTAAT
** *
69132767 TTTGTAAACCAAGGGTATTTTAGTAAT
1 TTTACAAATCAAGGGTATTTTAGTAAT
** *
69132794 TTTGTAAATTAAGGGTA
1 TTTACAAATCAAGGGTA
69132811 AAACGGTAAT
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 79 0.98
28 1 0.01
ACGTcount: A:0.31, C:0.06, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTACAAATCAAGGGTATTTTAGTAAT
Found at i:69132757 original size:54 final size:54
Alignment explanation
Indices: 69132670--69132810 Score: 151
Period size: 54 Copynumber: 2.6 Consensus size: 54
69132660 TTCTACCCTA
*
69132670 CAGGGGTATTTCGGT-A-TTTACAAATCAAGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAAAC
* ** * * **
69132722 TAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAAAC
* * ** *
69132776 CAAGGGTATTTTAGTAATTTTGTAAATTAAGGGTA
1 CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTA
69132811 AAACGGTAAT
Statistics
Matches: 70, Mismatches: 17, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
52 13 0.19
53 1 0.01
54 56 0.80
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (54 bp):
CAGGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTTAGTAATTTTACAAAC
Found at i:69132819 original size:27 final size:27
Alignment explanation
Indices: 69132805--69132942 Score: 222
Period size: 27 Copynumber: 5.1 Consensus size: 27
69132795 TTGTAAATTA
* *
69132805 AGGGTAAAACGGTAATTCTGTAAATCG
1 AGGGTAAAATGGTAATTCTATAAATCG
* *
69132832 AGGGTAAAATGATAATTCTATAAATCA
1 AGGGTAAAATGGTAATTCTATAAATCG
*
69132859 AGGGTAAAATGGTAATTCTATAAATTG
1 AGGGTAAAATGGTAATTCTATAAATCG
*
69132886 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTAAAATGGTAATTCTATAAATCG
69132913 AGGGTAAAATGGTAATTCTATAAATCG
1 AGGGTAAAATGGTAATTCTATAAATCG
69132940 AGG
1 AGG
69132943 ATATTTGGGT
Statistics
Matches: 101, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 101 1.00
ACGTcount: A:0.42, C:0.07, G:0.22, T:0.29
Consensus pattern (27 bp):
AGGGTAAAATGGTAATTCTATAAATCG
Found at i:69132832 original size:81 final size:81
Alignment explanation
Indices: 69132771--69132936 Score: 224
Period size: 81 Copynumber: 2.0 Consensus size: 81
69132761 GGTAATTTTG
*** * * * *
69132771 TAAACCAAGGGTATTTTAGTAATTTTGTAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGG
1 TAAACCAAGGGTAAAATAGTAATTCTATAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGG
69132836 TAAAATGATAATTCTA
66 TAAAATGATAATTCTA
* * * *
69132852 TAAATCAAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATAGTAATTCTATAAATCGAGGG
1 TAAACCAAGGGTAAAATAGTAATTCTATAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGG
*
69132917 TAAAATGGTAATTCTA
66 TAAAATGATAATTCTA
69132933 TAAA
1 TAAA
69132937 TCGAGGATAT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 73 1.00
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (81 bp):
TAAACCAAGGGTAAAATAGTAATTCTATAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGG
TAAAATGATAATTCTA
Found at i:69132848 original size:54 final size:54
Alignment explanation
Indices: 69132787--69132942 Score: 233
Period size: 54 Copynumber: 2.9 Consensus size: 54
69132777 AAGGGTATTT
* * * * *
69132787 TAGTAATTTTGTAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
*
69132841 T-GATAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAA
1 TAG-TAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
*
69132895 TAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGG
1 TAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGG
69132943 ATATTTGGGT
Statistics
Matches: 92, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
53 1 0.01
54 90 0.98
55 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (54 bp):
TAGTAATTCTATAAATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAA
Found at i:69132937 original size:81 final size:81
Alignment explanation
Indices: 69132789--69132938 Score: 237
Period size: 81 Copynumber: 1.9 Consensus size: 81
69132779 GGGTATTTTA
* * * *
69132789 GTAATTTTGTAAATTAAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATA
1 GTAATTCTATAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
69132854 AATCAAGGGTAAAATG
66 AATCAAGGGTAAAATG
* * *
69132870 GTAATTCTATAAATTGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTCTATAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
69132935 AATC
66 AATC
69132939 GAGGATATTT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.32
Consensus pattern (81 bp):
GTAATTCTATAAATTAAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATGATAATTCTATA
AATCAAGGGTAAAATG
Found at i:69135288 original size:31 final size:31
Alignment explanation
Indices: 69135250--69135324 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
69135240 ATGGTTACTA
*
69135250 GGCCGAAGCCTTTTCATAAATCATATCGCTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
69135281 GGCCGAAGCCTTTTCATAAATCATATCATTG
1 GGCCGAAGCCTTTTCATAAATCATATCACTG
*
69135312 GGCTGAAGCCTTT
1 GGCCGAAGCCTTT
69135325 ACTGTAAACG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (31 bp):
GGCCGAAGCCTTTTCATAAATCATATCACTG
Found at i:69135573 original size:25 final size:25
Alignment explanation
Indices: 69135545--69135614 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
69135535 CTCTTTTAAT
*
69135545 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
69135570 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
69135595 AACTTGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
69135615 AGCACTTCCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:69136057 original size:27 final size:27
Alignment explanation
Indices: 69135818--69136059 Score: 301
Period size: 27 Copynumber: 9.0 Consensus size: 27
69135808 GGGCAAAATG
* * * *
69135818 GTAATTTTACACC-ACAAGGGTATCTCG
1 GTAATTCTAC-CCTACAGGGGTATTTCA
*
69135845 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
69135872 GTATTTCTACCCTATAAGGGTATTTCTA
1 GTAATTCTACCCTACAGGGGTATTTC-A
*
69135900 -TAATTCTACCCTATAGGGGTATTTCTA
1 GTAATTCTACCCTACAGGGGTATTTC-A
69135927 -TAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
69135953 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
69135980 GTAATTCTACCCTACAGGGTTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
69136007 GTAATTCTACCCTACAGAGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
69136034 GTAATTCTACCCTACAGGGGTATTTC
1 GTAATTCTACCCTACAGGGGTATTTC
69136060 GATATTTTAC
Statistics
Matches: 192, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.02
27 189 0.98
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:69136161 original size:27 final size:27
Alignment explanation
Indices: 69136048--69136201 Score: 170
Period size: 27 Copynumber: 5.8 Consensus size: 27
69136038 TTCTACCCTA
* * *
69136048 CAGGGGTATTTCGAT-ATTTTACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
69136074 CAAGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
69136101 CAGGGGTATTTTAGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
** *
69136128 CAGGGGTATTTTGGTAATTTTACTGAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
69136155 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* *
69136182 CAAGGGTATTTTAGT-ATTTT
1 CAGGGGTATTTTGGTAATTTT
69136202 GTAAATCGAG
Statistics
Matches: 108, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 18 0.17
27 90 0.83
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:69136175 original size:81 final size:80
Alignment explanation
Indices: 69136025--69136201 Score: 223
Period size: 81 Copynumber: 2.2 Consensus size: 80
69136015 ACCCTACAGA
* **
69136025 GGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGATATTTTACAAATCAAGGGTATTTTGGTA
1 GGTATTTTAGTAATTTTACCAAACAGGGGTATTTCGATATTTTACAAATCAAGGGTATTTTGGTA
*
69136090 ATTTTACAAACCAGG
66 ATTTTACAAACCAAG
* * ** *
69136105 GGTATTTTAGTAATTTTA-CAAACCAGGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGG
1 GGTATTTTAGTAATTTTACCAAA-CAGGGGTATTTCGAT-ATTTTACAAATCAAGGGTATTTTGG
**
69136169 TAATTTTGTAAACCAAG
64 TAATTTTACAAACCAAG
69136186 GGTATTTTAGT-ATTTT
1 GGTATTTTAGTAATTTT
69136202 GTAAATCGAG
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
79 2 0.02
80 35 0.42
81 47 0.56
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.41
Consensus pattern (80 bp):
GGTATTTTAGTAATTTTACCAAACAGGGGTATTTCGATATTTTACAAATCAAGGGTATTTTGGTA
ATTTTACAAACCAAG
Found at i:69136358 original size:27 final size:27
Alignment explanation
Indices: 69136203--69136347 Score: 227
Period size: 27 Copynumber: 5.4 Consensus size: 27
69136193 TAGTATTTTG
*
69136203 TAAATCGAGGATAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
69136230 TAAATTGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
69136257 TAAATCAAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
* *
69136284 TAAATCGAGGGTAAAACAGTAATTCTT
1 TAAATCGAGGGTAAAACGGTAATTCTA
69136311 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
69136338 TAAATCGAGG
1 TAAATCGAGG
69136348 ATATTTGGGT
Statistics
Matches: 105, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 105 1.00
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:69141226 original size:46 final size:46
Alignment explanation
Indices: 69141159--69141331 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
69141149 TTGGGCATCC
*
69141159 GAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
*** * *
69141205 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCAT-TC-
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCT
** * * *
69141252 GAGGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAAGCCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
*
69141298 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69141332 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 62 0.60
47 28 0.27
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:69146747 original size:46 final size:46
Alignment explanation
Indices: 69146677--69146852 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
69146667 TATTTGGGCA
*
69146677 TCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
69146723 TCTGAACTCGTTGAGTTGAGTCCGAGTT--C-GA-GAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGTGAA-T--G
* * * *
69146768 CATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAAG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
69146816 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69146853 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 22
0.77 0.07 0.16
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 1 0.01
46 62 0.57
47 25 0.23
48 1 0.01
49 1 0.01
50 5 0.05
51 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:69146832 original size:93 final size:93
Alignment explanation
Indices: 69146673--69146844 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
69146663 AGGATATTTG
* * * * *
69146673 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGTGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
69146738 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
69146766 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAAAGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
69146831 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
69146845 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAAGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:69151847 original size:50 final size:49
Alignment explanation
Indices: 69151778--69152024 Score: 278
Period size: 50 Copynumber: 5.0 Consensus size: 49
69151768 GATGGTTTTA
*
69151778 AGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
** * * * * * *
69151827 AGGTCGTATGTGTAGTACTAACTGCAGGCTACTATGCGTACCCGACAACTT
1 A-GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT
* * * * *
69151878 CAATCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGATGGTT
1 -AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* *
69151928 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTATACCAGATTGTT
1 A-GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * *
69151978 AGTCGCATGTGTAGTACTAAGCGCAAGCTACTATGTGTACCAGATAG
1 AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
69152025 CTTCGGTTAC
Statistics
Matches: 160, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
49 42 0.26
50 81 0.51
51 36 0.22
52 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (49 bp):
AGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:69151913 original size:101 final size:101
Alignment explanation
Indices: 69151780--69151961 Score: 310
Period size: 101 Copynumber: 1.8 Consensus size: 101
69151770 TGGTTTTAAG
**
69151780 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
69151845 TAACTGCAGGCTACTATGCGTACCCGACAACTTCAA
66 TAACTGCAGGCTACTATGCGTACCCGACAACTTCAA
* * *
69151881 TCACGTGTGTAGTACTAAGTGCAGGCTGCTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
*
69151946 TAAGTGCAGGCTACTA
66 TAACTGCAGGCTACTA
69151962 CGTATACCAG
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
101 75 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGTAGTAC
TAACTGCAGGCTACTATGCGTACCCGACAACTTCAA
Found at i:69164563 original size:27 final size:27
Alignment explanation
Indices: 69164530--69164791 Score: 398
Period size: 27 Copynumber: 9.6 Consensus size: 27
69164520 TAAATTGTGC
*
69164530 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
69164557 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
69164585 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
69164612 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
69164640 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
69164667 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
69164695 AGCACTAAGTGTGCGAGTTGACTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69164722 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
69164750 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
69164777 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
69164792 GACTTAATAT
Statistics
Matches: 218, Mismatches: 13, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
27 116 0.53
28 102 0.47
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:69164594 original size:55 final size:55
Alignment explanation
Indices: 69164530--69164791 Score: 461
Period size: 55 Copynumber: 4.8 Consensus size: 55
69164520 TAAATTGTGC
69164530 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
69164585 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
69164640 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
69164695 AGCACTAAGTGTGCGAGTTGACTACGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
69164750 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
69164792 GACTTAATAT
Statistics
Matches: 200, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 200 1.00
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:69167435 original size:94 final size:94
Alignment explanation
Indices: 69167273--69167548 Score: 471
Period size: 94 Copynumber: 2.9 Consensus size: 94
69167263 AAGGTGACCG
* * * *
69167273 TATATGCTATTTGAATTATGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTCTGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
69167338 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
*
69167367 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGTG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
69167432 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
69167461 TATATGATATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACACTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
* *
69167526 GAATTAAATGGCACTATGTGTGC
66 GAATTAAATGTCACTTTGTGTGC
69167549 GGATCTATGC
Statistics
Matches: 172, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 172 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:69175236 original size:94 final size:94
Alignment explanation
Indices: 69175075--69175315 Score: 419
Period size: 94 Copynumber: 2.6 Consensus size: 94
69175065 GTGACCGTAG
* *
69175075 ATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCGGAA
1 ATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAA
69175140 TTAAATGTCACTTTGTATGCAAATTTTAT
66 TTAAATGTCACTTTGTATGCAAATTTTAT
* *
69175169 ATGCTATTTGAATTAAGTAAATTGCCTTATTATAACGAGTTAACATTGGCACTATGTGTGTGGAA
1 ATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAA
* **
69175234 TTAAATGTCACTTTGTGTGCAGGTTTTAT
66 TTAAATGTCACTTTGTATGCAAATTTTAT
69175263 ATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACT
1 ATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACT
69175316 GCCTAAAATG
Statistics
Matches: 139, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 139 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (94 bp):
ATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCGGAA
TTAAATGTCACTTTGTATGCAAATTTTAT
Found at i:69177792 original size:28 final size:28
Alignment explanation
Indices: 69177740--69177852 Score: 147
Period size: 28 Copynumber: 4.1 Consensus size: 28
69177730 ATGGCTGACA
* *
69177740 AAACAGATA-TTGTGACAGAGTCACCAG
1 AAACAGATATTTGTGGCAGAGCCACCAG
* * * *
69177767 ATACAAATAATTGTGGCAGGGCCACCAG
1 AAACAGATATTTGTGGCAGAGCCACCAG
*
69177795 AAACAGATATTTGTGACAGAGCCACCAG
1 AAACAGATATTTGTGGCAGAGCCACCAG
*
69177823 AAACAGATATTTGTGGCAGAGCCACTAG
1 AAACAGATATTTGTGGCAGAGCCACCAG
69177851 AA
1 AA
69177853 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 7 0.10
28 66 0.90
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (28 bp):
AAACAGATATTTGTGGCAGAGCCACCAG
Found at i:69177837 original size:56 final size:55
Alignment explanation
Indices: 69177740--69177852 Score: 163
Period size: 56 Copynumber: 2.0 Consensus size: 55
69177730 ATGGCTGACA
* * *
69177740 AAACAGATATTGTGACAGAGTCACCAGATACAAATAATTGTGGCAGGGCCACCAG
1 AAACAGATATTGTGACAGAGCCACCAGAAACAAATAATTGTGGCAGAGCCACCAG
* * *
69177795 AAACAGATATTTGTGACAGAGCCACCAGAAACAGATATTTGTGGCAGAGCCACTAG
1 AAACAGATA-TTGTGACAGAGCCACCAGAAACAAATAATTGTGGCAGAGCCACCAG
69177851 AA
1 AA
69177853 CGCTTCCTCC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
55 9 0.18
56 42 0.82
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (55 bp):
AAACAGATATTGTGACAGAGCCACCAGAAACAAATAATTGTGGCAGAGCCACCAG
Found at i:69179127 original size:18 final size:18
Alignment explanation
Indices: 69179079--69179135 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
69179069 GGCTATAGAG
*
69179079 GAAAAGAAGAAGA-ATAA
1 GAAAAGAAGAAGAGAGAA
*
69179096 GAAATAGATA-AAGAGAGGA
1 GAAA-AGA-AGAAGAGAGAA
*
69179115 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGAGAGAA
69179133 GAA
1 GAA
69179136 TTGTCAGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
17 5 0.16
18 20 0.62
19 7 0.22
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (18 bp):
GAAAAGAAGAAGAGAGAA
Found at i:69179131 original size:13 final size:13
Alignment explanation
Indices: 69179079--69179135 Score: 50
Period size: 12 Copynumber: 4.6 Consensus size: 13
69179069 GGCTATAGAG
69179079 GAAAAGAAGAAGA
1 GAAAAGAAGAAGA
*
69179092 -ATAAGAA-ATAGA
1 GAAAAGAAGA-AGA
* *
69179104 -TAAAG-AGAGGA
1 GAAAAGAAGAAGA
69179115 GAAAAGAAGAAGA
1 GAAAAGAAGAAGA
69179128 GAAAAGAA
1 GAAAAGAA
69179136 TTGTCAGAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
11 4 0.12
12 17 0.50
13 13 0.38
ACGTcount: A:0.67, C:0.00, G:0.28, T:0.05
Consensus pattern (13 bp):
GAAAAGAAGAAGA
Found at i:69179738 original size:13 final size:13
Alignment explanation
Indices: 69179719--69179761 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
69179709 TAGATTTTTT
69179719 CTAAATATTATCA
1 CTAAATATTATCA
*
69179732 TTAAATA--ATC-
1 CTAAATATTATCA
69179742 CTAAATATTATCA
1 CTAAATATTATCA
69179755 CTAAATA
1 CTAAATA
69179762 ATTCTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
10 6 0.24
11 3 0.12
12 3 0.12
13 13 0.52
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:69179745 original size:23 final size:23
Alignment explanation
Indices: 69179719--69179773 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
69179709 TAGATTTTTT
*
69179719 CTAAATATTATCATTAAATAATC
1 CTAAATATTATCACTAAATAATC
*
69179742 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATC
*
69179765 CTAATTATT
1 CTAAATATT
69179774 CAAAATTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATC
Found at i:69180769 original size:28 final size:28
Alignment explanation
Indices: 69180744--69180809 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
69180734 CCATCCCAGA
* *
69180744 AACAGTATCAGGTGGGCCTTAGCCCAAT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
*
69180772 AACAGAATCAGGTGGGTCTAAGCCC-AT
1 AACAGAATCAGGTGGGCCTAAGCCCAAT
*
69180799 TACAGAATCAG
1 AACAGAATCAG
69180810 TATCATATGC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 12 0.35
28 22 0.65
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (28 bp):
AACAGAATCAGGTGGGCCTAAGCCCAAT
Done.