Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 218 of 295
Found at i:69460179 original size:85 final size:85
Alignment explanation
Indices: 69460010--69460168 Score: 196
Period size: 85 Copynumber: 1.9 Consensus size: 85
69460000 ATCTGTGACA
* * * * *
69460010 TCGTGTAAGACCGTGTCTGGGACACAGTCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGGGA
69460075 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * *
69460095 TCGTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATGTAATACCACGTCTGG
1 TCGTGTAAGACCGTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTGG
*
69460158 GACGTCGGCAT
64 GACATCGGCAT
69460169 TGTTCTTGAT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:69461695 original size:14 final size:14
Alignment explanation
Indices: 69461678--69461716 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
69461668 AGAAAGAAAA
69461678 TTTGGGAAAATACT
1 TTTGGGAAAATACT
69461692 TTTGGGAAAATACT
1 TTTGGGAAAATACT
69461706 TTTGGGAAAAT
1 TTTGGGAAAAT
69461717 TTGATTGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (14 bp):
TTTGGGAAAATACT
Found at i:69469946 original size:40 final size:40
Alignment explanation
Indices: 69469883--69470133 Score: 287
Period size: 40 Copynumber: 6.3 Consensus size: 40
69469873 TCTTCGGAAT
* * * *
69469883 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCTGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
69469922 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
* *
69469962 TTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCAACTAGCACAAATGCCTTCGGGTC
* * * * * *
69470002 TCAACCCGGGTATAGCAATTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
*
69470042 TTAGCCCGGATAAAATC-ACTAGCA-AAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCAACTAGCACAAA-TGCCTTCGGGTC
* * * *
69470082 TTAACCCGGGTAT-GCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
69470121 TTAGCCCGGATAT
1 TTAGCCCGGATAT
69470134 CATTCAAATG
Statistics
Matches: 177, Mismatches: 28, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.01
39 40 0.23
40 129 0.73
41 7 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACTAGCACAAATGCCTTCGGGTC
Found at i:69470010 original size:80 final size:80
Alignment explanation
Indices: 69469883--69470132 Score: 378
Period size: 80 Copynumber: 3.1 Consensus size: 80
69469873 TCTTCGGAAT
* * * * * * * * *
69469883 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCTGGTCTTAGCCCGGATATATCAACTAGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
69469947 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
69469962 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTCAACCCGGGTATAGCAATTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
69470027 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
69470042 TTAGCCCGGATAAAATCACTAGCAAAATTGCCTTCGGGTCTTAACCCGGGTAT-GCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
69470106 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
69470121 TTAGCCCGGATA
1 TTAGCCCGGATA
69470133 TCATTCAAAT
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
79 41 0.26
80 115 0.74
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:69477728 original size:40 final size:38
Alignment explanation
Indices: 69477664--69477905 Score: 280
Period size: 40 Copynumber: 6.3 Consensus size: 38
69477654 TCTTCGGAAT
* *
69477664 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCAC-AATGCCTTCGGGTC
*
69477703 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCAC-AATGCCTTCGGGTC
*
69477743 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAA-TGCCTTCGGGTC
* * * * *
69477783 TTAACCCGGGTATAGCAATCGCACAATGCCTTCGGGTC
1 TTAGCCCGGATATATCACTAGCACAATGCCTTCGGGTC
*
69477821 TTAGCCCGG-TAAAATCAC-AGCACAATGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAATGCCTTCGGGTC
*
69477858 TTA-CCCGG--ATATCACTAGCACAATGCCTTCGGGAC
1 TTAGCCCGGATATATCACTAGCACAATGCCTTCGGGTC
69477893 TTAGCCCGGATAT
1 TTAGCCCGGATAT
69477906 CATTCAAATG
Statistics
Matches: 176, Mismatches: 18, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
34 6 0.03
35 21 0.12
36 10 0.06
37 22 0.12
38 26 0.15
39 19 0.11
40 68 0.39
41 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (38 bp):
TTAGCCCGGATATATCACTAGCACAATGCCTTCGGGTC
Found at i:69477791 original size:80 final size:76
Alignment explanation
Indices: 69477664--69477904 Score: 323
Period size: 80 Copynumber: 3.2 Consensus size: 76
69477654 TCTTCGGAAT
* * *
69477664 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCAC-AGCAC-AATGCCTTCGGGTCTTAACCCGG-TATATCAACTCGCAC
69477728 AAATGCCTTCGGGTC
63 -AATGCCTTCGGGTC
*
69477743 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAA-TCGCAC
1 TTAGCCCGGATAAAATCAC-AGCACAA-TGCCTTCGGGTCTTAACCC-GGTATATCAACTCGCAC
69477807 AATGCCTTCGGGTC
63 AATGCCTTCGGGTC
*
69477821 TTAGCCCGG-TAAAATCACAGCACAATGCCTTCGGGTCTT-ACCCGG-ATATC-ACTAGCACAAT
1 TTAGCCCGGATAAAATCACAGCACAATGCCTTCGGGTCTTAACCCGGTATATCAACTCGCACAAT
*
69477882 GCCTTCGGGAC
66 GCCTTCGGGTC
69477893 TTAGCCCGGATA
1 TTAGCCCGGATA
69477905 TCATTCAAAT
Statistics
Matches: 149, Mismatches: 8, Indels: 16
0.86 0.05 0.09
Matches are distributed among these distances:
71 1 0.01
72 31 0.21
73 4 0.03
74 4 0.03
75 14 0.09
76 7 0.05
77 9 0.06
78 23 0.15
79 12 0.08
80 42 0.28
81 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (76 bp):
TTAGCCCGGATAAAATCACAGCACAATGCCTTCGGGTCTTAACCCGGTATATCAACTCGCACAAT
GCCTTCGGGTC
Found at i:69498050 original size:40 final size:40
Alignment explanation
Indices: 69497991--69498263 Score: 483
Period size: 40 Copynumber: 6.8 Consensus size: 40
69497981 GAACATTGGA
* *
69497991 ATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
69498031 ACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
69498071 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
69498111 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
69498151 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
69498191 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTC
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
69498231 ATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATG
69498264 TTTGCGGCTG
Statistics
Matches: 225, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 225 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:69500300 original size:40 final size:40
Alignment explanation
Indices: 69500222--69500398 Score: 207
Period size: 40 Copynumber: 4.5 Consensus size: 40
69500212 CGGATGATAA
* * * **
69500222 CCGGACTAAGATCCGAAGGTATTCGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
69500262 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* *
69500302 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
69500342 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATGT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
69500382 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
69500399 ATACTTGGGT
Statistics
Matches: 119, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 101 0.85
41 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:69500665 original size:22 final size:22
Alignment explanation
Indices: 69500625--69500666 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
69500615 GAATGTGCAT
*
69500625 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
69500647 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
69500667 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:69502603 original size:19 final size:19
Alignment explanation
Indices: 69502570--69502608 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
69502560 CCTACACAAC
*
69502570 AACATATAACAACAATCAA
1 AACATATAACAACAACCAA
69502589 AACATAT-ACATACAACCAA
1 AACATATAACA-ACAACCAA
69502608 A
1 A
69502609 TCAGCCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (19 bp):
AACATATAACAACAACCAA
Found at i:69503420 original size:42 final size:42
Alignment explanation
Indices: 69503259--69503412 Score: 193
Period size: 42 Copynumber: 3.6 Consensus size: 42
69503249 CATCGTACCA
** *
69503259 ATGCCATATCGTAGACATGGTCTTACATGTAA-TCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AAGTCTCATATCG
* * *
69503301 ATGCCAATAGCCCAGCTATGGTCTTACATAAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
* * *
69503344 ATGCCATATCCCAGATATAGTCTTGCATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
*
69503386 ATGCCATATCCCATATATGGTCTTACA
1 ATGCCATATCCCAGATATGGTCTTACA
69503413 CGTAGTCTTA
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
42 62 0.65
43 33 0.35
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATCG
Found at i:69506112 original size:48 final size:48
Alignment explanation
Indices: 69506026--69506250 Score: 333
Period size: 48 Copynumber: 4.6 Consensus size: 48
69506016 TAAGGTCTCA
* * *
69506026 TGTAAGACCATGTTTGGGACATGGCAGCGGTGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
* * * *
69506074 TGTGAGACCATGTCTGGGACATGGCATCGGCGTGGATATATATGAGCCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTG--ATATGTGAGCCAG
* *
69506124 TGTAAGACCATGTTTGGGACATGGCATTGGCGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
**
69506172 TGTAAGACCATGTCTGGGACATGGCATCAACGTTGATATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
69506220 TGTAAGACCATGTCTGGGACATGGCATCGGC
1 TGTAAGACCATGTCTGGGACATGGCATCGGC
69506251 ACTGACATGA
Statistics
Matches: 156, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
48 114 0.73
50 42 0.27
ACGTcount: A:0.24, C:0.17, G:0.32, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGAGCCAG
Found at i:69506194 original size:98 final size:96
Alignment explanation
Indices: 69506025--69506250 Score: 344
Period size: 98 Copynumber: 2.3 Consensus size: 96
69506015 ATAAGGTCTC
* * *
69506025 ATGTAAGACCATGTTTGGGACATGGCAGCGGTGTTGATATGTGAGCCAGTGTGAGACCATGTCTG
1 ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
**
69506090 GGACATGGCATCGGCGTGGATATATATGAGCCA
66 GGACATGGCATCAACGTGG--ATATATGAGCCA
*
69506123 ATGTAAGACCATGTTTGGGACATGGCATTGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
1 ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
* *
69506188 GGACATGGCATCAACGTTGATATGTGAGCCA
66 GGACATGGCATCAACGTGGATATATGAGCCA
* *
69506219 GTGTAAGACCATGTCTGGGACATGGCATCGGC
1 ATGTAAGACCATGTTTGGGACATGGCATCGGC
69506251 ACTGACATGA
Statistics
Matches: 117, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 40 0.34
98 77 0.66
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (96 bp):
ATGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATCAACGTGGATATATGAGCCA
Found at i:69508862 original size:37 final size:35
Alignment explanation
Indices: 69508820--69508918 Score: 137
Period size: 37 Copynumber: 2.8 Consensus size: 35
69508810 ATGCCACTCA
69508820 TCTTTCAATTAACATCCTGCCACAACACTGAAACTT
1 TCTTTCAATTAACATCCTGCCACAACACTGAAAC-T
* * *
69508856 CTCTTTCAATTAAAATCCTGCCAC-ACGCTGATACT
1 -TCTTTCAATTAACATCCTGCCACAACACTGAAACT
*
69508891 TCATTCAATTAACATCCTGCCACAACAC
1 TCTTTCAATTAACATCCTGCCACAACAC
69508919 CCATACTTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
34 21 0.38
35 4 0.07
36 8 0.15
37 22 0.40
ACGTcount: A:0.32, C:0.32, G:0.06, T:0.29
Consensus pattern (35 bp):
TCTTTCAATTAACATCCTGCCACAACACTGAAACT
Found at i:69508908 original size:34 final size:36
Alignment explanation
Indices: 69508823--69508914 Score: 125
Period size: 34 Copynumber: 2.6 Consensus size: 36
69508813 CCACTCATCT
*
69508823 TTCAATTAACATCCTGCCACAACACTGAAACTTCTCT
1 TTCAATTAACATCCTGCCAC-ACACTGAAACTTCTCA
* * *
69508860 TTCAATTAAAATCCTGCCACACGCTGATAC-T-TCA
1 TTCAATTAACATCCTGCCACACACTGAAACTTCTCA
69508894 TTCAATTAACATCCTGCCACA
1 TTCAATTAACATCCTGCCACA
69508915 ACACCCATAC
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
34 22 0.44
35 1 0.02
36 8 0.16
37 19 0.38
ACGTcount: A:0.33, C:0.32, G:0.07, T:0.29
Consensus pattern (36 bp):
TTCAATTAACATCCTGCCACACACTGAAACTTCTCA
Found at i:69520250 original size:3 final size:3
Alignment explanation
Indices: 69520242--69520266 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
69520232 GTATGTATTG
69520242 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
69520267 TTAGAACATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:69521332 original size:7 final size:6
Alignment explanation
Indices: 69521312--69521342 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
69521302 TTCAACATAT
69521312 AAATAA AAATAA AAATAAA AAATAA AAATAA
1 AAATAA AAATAA AAAT-AA AAATAA AAATAA
69521343 TAGGTGTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:69521334 original size:13 final size:13
Alignment explanation
Indices: 69521312--69521342 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
69521302 TTCAACATAT
69521312 AAAT-AAAAATAA
1 AAATAAAAAATAA
69521324 AAATAAAAAATAA
1 AAATAAAAAATAA
69521337 AAATAA
1 AAATAA
69521343 TAGGTGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATAAAAAATAA
Found at i:69527884 original size:66 final size:65
Alignment explanation
Indices: 69527757--69527884 Score: 170
Period size: 66 Copynumber: 1.9 Consensus size: 65
69527747 TACTATGTGT
* * *
69527757 ACACCATGTAGACAAGAGAGCTACGGATATATGTAGCTAGGTCGCATGCGGGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTACGGATAAATG-AGCTAGGTCACATGCGGGGTACCAAGTGAAG
69527822 G
65 G
*
69527823 ACACCATGTAGACAAGAGAGCTACGAGATAAACTG-GCTAGGTCACATG-GGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTACG-GATAAA-TGAGCTAGGTCACATGCGG-GGTACCAAGTG
69527885 TTCACCATGT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
65 2 0.04
66 46 0.84
67 5 0.09
68 2 0.04
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (65 bp):
ACACCATGTAGACAAGAGAGCTACGGATAAATGAGCTAGGTCACATGCGGGGTACCAAGTGAAGG
Found at i:69535390 original size:576 final size:576
Alignment explanation
Indices: 69534298--69535451 Score: 2281
Period size: 576 Copynumber: 2.0 Consensus size: 576
69534288 TTATAGAGAC
69534298 AAACACCCTTAGTGAGCTCGGATTTGAATTACCAGTGCAGGCTAAATTCAGATCCTAATCAGATT
1 AAACACCCTTAGTGAGCTCGGATTTGAATTACCAGTGCAGGCTAAATTCAGATCCTAATCAGATT
69534363 ACCCGTCCGGGCTAAATCCACAATGCGCACATATTCTTCGGGAGGCTCAATCACTCAAGGAACAC
66 ACCCGTCCGGGCTAAATCCACAATGCGCACATATTCTTCGGGAGGCTCAATCACTCAAGGAACAC
69534428 CTGCTCGGGCTAGATCCTTTCTACATTTAAGATCAACGGATTATCCACCCGAGCTAAATCCTTTT
131 CTGCTCGGGCTAGATCCTTTCTACATTTAAGATCAACGGATTATCCACCCGAGCTAAATCCTTTT
69534493 CTGCAACACATGAAGGATCTCAAGTCATGTAAGCCATGGTTTATCCATCGAATTTCCCTTTTTAC
196 CTGCAACACATGAAGGATCTCAAGTCATGTAAGCCATGGTTTATCCATCGAATTTCCCTTTTTAC
69534558 TTCAACCGGGACATTTATCATTATGTCATTATTATTGACATATTTCATGGATTTTCATGCCATCA
261 TTCAACCGGGACATTTATCATTATGTCATTATTATTGACATATTTCATGGATTTTCATGCCATCA
69534623 TTATAGCTACATATCATGCATTCATAACACACGTAATTAGGCATATAAATAATTTACTTAAAGTT
326 TTATAGCTACATATCATGCATTCATAACACACGTAATTAGGCATATAAATAATTTACTTAAAGTT
*
69534688 GTTCGAACTTACCTGGTATTCGTCTCGGTTTCGCATTTCAGTTTTTCCGAAACCTTTCGTTTCCC
391 ATTCGAACTTACCTGGTATTCGTCTCGGTTTCGCATTTCAGTTTTTCCGAAACCTTTCGTTTCCC
69534753 TTGATCGATCTCTGAAATTTTCTCCTCGAGGTTGATAACAATAAAAATGAATCATCAATACCTCA
456 TTGATCGATCTCTGAAATTTTCTCCTCGAGGTTGATAACAATAAAAATGAATCATCAATACCTCA
69534818 CATTATTCTTTTTGAGCCTAAATATCACCCCCGGAGACAATGACCGTTTTGCCCCT
521 CATTATTCTTTTTGAGCCTAAATATCACCCCCGGAGACAATGACCGTTTTGCCCCT
69534874 AAACACCCTTAGTGAGCTCGGATTTGAATTACCAGTGCAGGCTAAATTCAGATCCTAATCAGATT
1 AAACACCCTTAGTGAGCTCGGATTTGAATTACCAGTGCAGGCTAAATTCAGATCCTAATCAGATT
69534939 ACCCGTCCGGGCTAAATCCACAATGCGCACATATTCTTCGGGAGGCTCAATCACTCAAGGAACAC
66 ACCCGTCCGGGCTAAATCCACAATGCGCACATATTCTTCGGGAGGCTCAATCACTCAAGGAACAC
69535004 CTGCTCGGGCTAGATCCTTTCTACATTTAAGATCAACGGATTATCCACCCGAGCTAAATCCTTTT
131 CTGCTCGGGCTAGATCCTTTCTACATTTAAGATCAACGGATTATCCACCCGAGCTAAATCCTTTT
69535069 CTGCAACACATGAAGGATCTCAAGTCATGTAAGCCATGGTTTATCCATCGAATTTCCCTTTTTAC
196 CTGCAACACATGAAGGATCTCAAGTCATGTAAGCCATGGTTTATCCATCGAATTTCCCTTTTTAC
69535134 TTCAACCGGGACATTTATCATTATGTCATTATTATTGACATATTTCATGGATTTTCATGCCATCA
261 TTCAACCGGGACATTTATCATTATGTCATTATTATTGACATATTTCATGGATTTTCATGCCATCA
69535199 TTATAGCTACATATCATGCATTCATAACACACGTAATTAGGCATATAAATAATTTACTTAAAGTT
326 TTATAGCTACATATCATGCATTCATAACACACGTAATTAGGCATATAAATAATTTACTTAAAGTT
69535264 ATTCGAACTTACCTGGTATTCGTCTCGGTTTCGCATTTCAGTTTTTCCGAAACCTTTCGTTTCCC
391 ATTCGAACTTACCTGGTATTCGTCTCGGTTTCGCATTTCAGTTTTTCCGAAACCTTTCGTTTCCC
*
69535329 TTGATCGATCTCTGAAATTTTCTCCTTGAGGTTGATAACAATAAAAATGAATCATCAATACCTCA
456 TTGATCGATCTCTGAAATTTTCTCCTCGAGGTTGATAACAATAAAAATGAATCATCAATACCTCA
*
69535394 CATTATTCTTTTTGAGCCTAAATATCACCCCCGGATACAATGACCGTTTTGCCCCT
521 CATTATTCTTTTTGAGCCTAAATATCACCCCCGGAGACAATGACCGTTTTGCCCCT
69535450 AA
1 AA
69535452 CCTTTCACAT
Statistics
Matches: 575, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
576 575 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.33
Consensus pattern (576 bp):
AAACACCCTTAGTGAGCTCGGATTTGAATTACCAGTGCAGGCTAAATTCAGATCCTAATCAGATT
ACCCGTCCGGGCTAAATCCACAATGCGCACATATTCTTCGGGAGGCTCAATCACTCAAGGAACAC
CTGCTCGGGCTAGATCCTTTCTACATTTAAGATCAACGGATTATCCACCCGAGCTAAATCCTTTT
CTGCAACACATGAAGGATCTCAAGTCATGTAAGCCATGGTTTATCCATCGAATTTCCCTTTTTAC
TTCAACCGGGACATTTATCATTATGTCATTATTATTGACATATTTCATGGATTTTCATGCCATCA
TTATAGCTACATATCATGCATTCATAACACACGTAATTAGGCATATAAATAATTTACTTAAAGTT
ATTCGAACTTACCTGGTATTCGTCTCGGTTTCGCATTTCAGTTTTTCCGAAACCTTTCGTTTCCC
TTGATCGATCTCTGAAATTTTCTCCTCGAGGTTGATAACAATAAAAATGAATCATCAATACCTCA
CATTATTCTTTTTGAGCCTAAATATCACCCCCGGAGACAATGACCGTTTTGCCCCT
Found at i:69549448 original size:21 final size:20
Alignment explanation
Indices: 69549397--69549439 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
69549387 TCTGGTTGTC
69549397 TAACAAACTCCACCCCCGAT
1 TAACAAACTCCACCCCCGAT
69549417 TAACAAACTCCACCCCCGAT
1 TAACAAACTCCACCCCCGAT
69549437 TAA
1 TAA
69549440 TCTTTCTCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.42, G:0.05, T:0.16
Consensus pattern (20 bp):
TAACAAACTCCACCCCCGAT
Found at i:69555499 original size:27 final size:27
Alignment explanation
Indices: 69555469--69555646 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
69555459 ATATTGAGCC
* *
69555469 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
69555496 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
69555523 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
69555551 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
69555578 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
69555605 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
69555632 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69555647 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:69555581 original size:55 final size:54
Alignment explanation
Indices: 69555469--69555646 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
69555459 ATATTGAGCC
* * * * *
69555469 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
69555523 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
69555578 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
69555632 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
69555647 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:69571337 original size:45 final size:45
Alignment explanation
Indices: 69571268--69571440 Score: 219
Period size: 45 Copynumber: 3.9 Consensus size: 45
69571258 CGTATAGTAA
* * * *
69571268 TATTTGGGCCTTTGAGCCTAGCAGGCTATGATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
* * *
69571313 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCCAGTGAAATAC
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
*
69571358 TATTCGAGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAAT-AC
* *
69571403 TA-TCGGG-CTTCAAGCCTAGCAGGC-AAAATGCCGGTGAA
1 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAA
69571441 TGAACTCGGG
Statistics
Matches: 115, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
42 13 0.11
43 16 0.14
44 4 0.03
45 81 0.70
46 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATAC
Found at i:69571462 original size:41 final size:41
Alignment explanation
Indices: 69571374--69571480 Score: 135
Period size: 41 Copynumber: 2.6 Consensus size: 41
69571364 AGCCTTCGAG
* * *
69571374 CCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAAG
1 CCTAGCAGGC-AAAATGCCGGTG-AATGATATCGGGCTTAAAA
*
69571417 CCTAGCAGGCAAAATGCCGGTGAATGA-ACTCGGGTTTAAAA
1 CCTAGCAGGCAAAATGCCGGTGAATGATA-TCGGGCTTAAAA
*
69571458 CCTAGCAGGCTAAATGCCGGTGA
1 CCTAGCAGGCAAAATGCCGGTGA
69571481 TTTGATAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
40 1 0.02
41 36 0.62
42 11 0.19
43 10 0.17
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (41 bp):
CCTAGCAGGCAAAATGCCGGTGAATGATATCGGGCTTAAAA
Found at i:69582706 original size:41 final size:41
Alignment explanation
Indices: 69582661--69582755 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
69582651 TATATGCAGC
** *
69582661 TCATCTTCAGCTTGAGTTAGCTCAGAGTACTCTACACTAGT
1 TCATCTTCAGCTCAAGATAGCTCAGAGTACTCTACACTAGT
* *
69582702 TCATCTTCAGCTCAAGATAGCTCAGAGTACTCTACACCAGC
1 TCATCTTCAGCTCAAGATAGCTCAGAGTACTCTACACTAGT
*
69582743 TCATGTT-AGCTCA
1 TCATCTTCAGCTCA
69582756 CTCCACTTGT
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
40 6 0.12
41 42 0.88
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (41 bp):
TCATCTTCAGCTCAAGATAGCTCAGAGTACTCTACACTAGT
Found at i:69583817 original size:18 final size:19
Alignment explanation
Indices: 69583773--69583817 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
69583763 AGGAATTCAT
69583773 GTGATGAAACGAGTGTTGA
1 GTGATGAAACGAGTGTTGA
* *
69583792 G-CAAGAAACGAGTGTTG-
1 GTGATGAAACGAGTGTTGA
69583809 GTGATGAAA
1 GTGATGAAA
69583818 AAGAAATGAG
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.36, C:0.07, G:0.36, T:0.22
Consensus pattern (19 bp):
GTGATGAAACGAGTGTTGA
Found at i:69586978 original size:19 final size:19
Alignment explanation
Indices: 69586951--69587002 Score: 95
Period size: 19 Copynumber: 2.7 Consensus size: 19
69586941 AATAAATTAC
69586951 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
*
69586970 TCATTTTAGTTAATTGAGT
1 TCATCTTAGTTAATTGAGT
69586989 TCATCTTAGTTAAT
1 TCATCTTAGTTAAT
69587003 AACTCATCTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (19 bp):
TCATCTTAGTTAATTGAGT
Found at i:69587021 original size:18 final size:17
Alignment explanation
Indices: 69586989--69587022 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
69586979 TTAATTGAGT
69586989 TCATCTTAGTTAATAAC
1 TCATCTTAGTTAATAAC
69587006 TCATCTTAGCTTAATAA
1 TCATCTTAG-TTAATAA
69587023 ATGAGTTGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (17 bp):
TCATCTTAGTTAATAAC
Found at i:69589359 original size:21 final size:22
Alignment explanation
Indices: 69589329--69589376 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
69589319 GTGAAGAATT
69589329 AAAA-AAATACAAAA-CAAAAA
1 AAAAGAAATACAAAATCAAAAA
*
69589349 AAAAGAAATACAAAATTAAAAA
1 AAAAGAAATACAAAATCAAAAA
69589371 AAAAGA
1 AAAAGA
69589377 GAGGCTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 4 0.16
21 10 0.40
22 11 0.44
ACGTcount: A:0.81, C:0.06, G:0.04, T:0.08
Consensus pattern (22 bp):
AAAAGAAATACAAAATCAAAAA
Found at i:69591590 original size:69 final size:70
Alignment explanation
Indices: 69591458--69591590 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
69591448 TAGTTTATTA
* * * * *
69591458 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTA
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
69591523 CTTAG
66 CTTAG
69591528 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGT
69591591 GTTATGTACT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 35 0.60
70 23 0.40
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTCTCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:69593032 original size:47 final size:47
Alignment explanation
Indices: 69592978--69593542 Score: 783
Period size: 47 Copynumber: 11.6 Consensus size: 47
69592968 TATTTGAATA
*
69592978 AATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69593025 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69593072 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
69593121 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCC---T-----A----ATGGCCGATGTGATG
69593180 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69593227 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69593274 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69593321 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
69593368 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
69593415 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCC---T------AATGGCCGATGTGATG
* * * *
69593471 AATGTG-AAGTGTATATATGTGAT-AGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
69593516 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
69593543 TCCCGAAGGG
Statistics
Matches: 476, Mismatches: 17, Indels: 50
0.88 0.03 0.09
Matches are distributed among these distances:
45 18 0.04
46 16 0.03
47 304 0.64
49 45 0.09
50 2 0.00
51 1 0.00
54 5 0.01
55 18 0.04
56 22 0.05
59 45 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:69593529 original size:101 final size:103
Alignment explanation
Indices: 69593352--69593542 Score: 296
Period size: 101 Copynumber: 1.9 Consensus size: 103
69593342 GATAAGGCCT
* * *
69593352 AATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAA
1 AATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGCGATGAA
*
69593417 TGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
66 TGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCCGA
* * * *
69593455 AATGGCCGATGTGATGAATGTG-AAGTGTATATATGTGAT-AGGCCGAGTGGCCAACGTGATGGA
1 AATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGCGATGAA
69593518 TGTGAAAGTGTATAAATGTGATAAG
66 TGTGAAAGTGTATAAATGTGATAAG
69593543 TCCCGAAGGG
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
101 42 0.52
102 17 0.21
103 21 0.26
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (103 bp):
AATGGCCGATGCGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGCGATGAA
TGTGAAAGTGTATAAATGTGATAAGGCCTAATAGCCGA
Found at i:69602505 original size:20 final size:20
Alignment explanation
Indices: 69602482--69602528 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
69602472 AGCTCCGTCC
*
69602482 AGCTCAATTCAGCTCATTTG
1 AGCTCAATTCAGATCATTTG
* **
69602502 AGCTCATTTCAGATTTTTTG
1 AGCTCAATTCAGATCATTTG
69602522 AGCTCAA
1 AGCTCAA
69602529 CCGAGCTTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.38
Consensus pattern (20 bp):
AGCTCAATTCAGATCATTTG
Found at i:69604752 original size:40 final size:39
Alignment explanation
Indices: 69604663--69604925 Score: 261
Period size: 40 Copynumber: 6.6 Consensus size: 39
69604653 TTGGATGATG
*
69604663 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
69604701 ATCCGGACTAAGATCCGAAGGCATTCGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAT
* * *
69604742 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
* *
69604781 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAT
* *
69604821 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGATACTAAT
*
69604860 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTAAT
* *
69604899 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
69604926 AACGAGGAGC
Statistics
Matches: 190, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
38 2 0.01
39 85 0.45
40 90 0.47
41 12 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:69604794 original size:79 final size:80
Alignment explanation
Indices: 69604663--69604925 Score: 353
Period size: 79 Copynumber: 3.3 Consensus size: 80
69604653 TTGGATGATG
* *
69604663 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGACTAAGATCCGAAGGCAT
69604725 TCGTGCGAGATACTAAT
64 TCGTGCGAGATACTAAT
69604742 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
69604806 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* **
69604821 TCCGGGCTAAG-CCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
69604884 TGTGCGA-ATTACT-AT
65 CGTGCGAGA-TACTAAT
* *
69604899 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69604926 AACGAGGAGC
Statistics
Matches: 168, Mismatches: 9, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
78 13 0.08
79 134 0.80
80 21 0.12
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATACTAAT
Found at i:69604956 original size:79 final size:78
Alignment explanation
Indices: 69604663--69604958 Score: 302
Period size: 79 Copynumber: 3.7 Consensus size: 78
69604653 TTGGATGATG
* * *
69604663 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGA-TCCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGG-TTAA-ATTCCGAAGGCA
69604724 TTCGTGCGAGATACTAAT
61 TTCGTGCGAGATACTAAT
*
69604742 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGA-TCCGAAGGCATTC
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGG-TTAA-ATTCCGAAGGCATTC
69604806 GTGCGAGATACTAAT
64 GTGCGAGATACTAAT
* * * *
69604821 TCCGGGCTAAGCCTGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCC-GGTTAAATTCCGAAGGCATTCG
69604886 TGCGA-ATTACT-AT
65 TGCGAGA-TACTAAT
* * ** * *
69604899 AACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGTTAAATTCCGAAGG
69604959 TACGTGATTT
Statistics
Matches: 192, Mismatches: 16, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
78 12 0.06
79 146 0.76
80 34 0.18
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGTTAAATTCCGAAGGCATTCGT
GCGAGATACTAAT
Found at i:69612745 original size:39 final size:37
Alignment explanation
Indices: 69612689--69612916 Score: 160
Period size: 39 Copynumber: 5.8 Consensus size: 37
69612679 TTGGATGATG
* *
69612689 TCCGGGCTAAGTCCCGAAGGCTTGTGCTAAGTGAC-AATA
1 TCCGGACTAAGT-CCGAAGGCTTGTGC-GAGT-ACTAATA
*
69612728 TCCGGACTAAGATCCGAAGGTATTCGTGCGAGATACTAAT-
1 TCCGGACTAAG-TCCGAAGG-CTT-GTGCGAG-TACTAATA
* *
69612768 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGACTAAGTCCGAAGGC--TTGTGCGAG-TACTAATA
69612807 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGATACTAAT-
1 TCCGGACTAAG-TCCGAAGGC-TT-GTGCGAG-TACTAATA
* *
69612847 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA-A
1 TCCGGACTAAGTCCGAAGGC--TTGTGCGAG-TACTAATA
**
69612886 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TCCGGACTAAGT-CCGAAGGC--TTGTGCGA
69612917 ATTACTATAA
Statistics
Matches: 158, Mismatches: 17, Indels: 27
0.78 0.08 0.13
Matches are distributed among these distances:
39 80 0.51
40 70 0.44
41 8 0.05
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (37 bp):
TCCGGACTAAGTCCGAAGGCTTGTGCGAGTACTAATA
Found at i:69612778 original size:40 final size:39
Alignment explanation
Indices: 69612689--69612951 Score: 268
Period size: 40 Copynumber: 6.6 Consensus size: 39
69612679 TTGGATGATG
*
69612689 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* * * *
69612728 TCCGGACTAAGATCCGAAGGTATTCGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
69612768 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
* * *
69612807 TCCGGACTAAGATCCGAAGGCATTCGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
69612847 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
*
69612886 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTA-AA
*
69612927 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
69612952 AACGAGGAGC
Statistics
Matches: 189, Mismatches: 26, Indels: 17
0.81 0.11 0.07
Matches are distributed among these distances:
39 84 0.44
40 93 0.49
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:69612820 original size:79 final size:80
Alignment explanation
Indices: 69612689--69612951 Score: 353
Period size: 79 Copynumber: 3.3 Consensus size: 80
69612679 TTGGATGATG
* * *
69612689 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGACTAAGATCCGAAGGCAT
69612751 TCGTGCGAGATACTAAT
64 TCGTGCGAGATACTAAT
69612768 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
69612832 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
**
69612847 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGAT-CCGAAGGCATT
*
69612910 TGTGCGA-ATTACT-AT
65 CGTGCGAGA-TACTAAT
* *
69612925 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
69612952 AACGAGGAGC
Statistics
Matches: 169, Mismatches: 8, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
78 13 0.08
79 134 0.79
80 22 0.13
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTC
GTGCGAGATACTAAT
Found at i:69612982 original size:79 final size:79
Alignment explanation
Indices: 69612740--69612984 Score: 266
Period size: 79 Copynumber: 3.1 Consensus size: 79
69612730 CGGACTAAGA
* * ** *
69612740 TCCGAAGGTATTCGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTA
**
69612805 AATCCGGACTAAGA-
66 AATCCGGGTTAA-AT
* ** *
69612819 TCCGAAGGCATTCGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTA
*
69612884 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* * *
69612898 CCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GA
1 TCCGAAGGCATTCGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA
*
69612960 GCTATATCC-GGTTAAAT
63 -CTAAATCCGGGTTAAAT
69612977 TCCGAAGG
1 TCCGAAGG
69612985 TACGTGATTT
Statistics
Matches: 147, Mismatches: 14, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
78 3 0.02
79 119 0.81
80 25 0.17
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGAAGGCATTCGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTA
AATCCGGGTTAAAT
Found at i:69616914 original size:13 final size:13
Alignment explanation
Indices: 69616896--69616920 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69616886 TAATGGTATA
69616896 TTGAATCCATGAT
1 TTGAATCCATGAT
69616909 TTGAATCCATGA
1 TTGAATCCATGA
69616921 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:69618663 original size:47 final size:47
Alignment explanation
Indices: 69618531--69618987 Score: 700
Period size: 47 Copynumber: 9.6 Consensus size: 47
69618521 TTATTCATTG
* *
69618531 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
69618578 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
69618627 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
69618674 TAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
69618723 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
69618772 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
69618819 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
69618866 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * *
69618913 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
69618960 -AGATGTGAAAGTGTATAAATGTGATAAG
1 GA-ATGTGAAAGTGTATATATGTGATAAG
69618988 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 21, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 247 0.64
49 136 0.35
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:69618700 original size:96 final size:96
Alignment explanation
Indices: 69618531--69618987 Score: 721
Period size: 96 Copynumber: 4.8 Consensus size: 96
69618521 TTATTCATTG
69618531 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
69618596 ATATGTGATAAGGCCTAATGGCCGATGTGAT
66 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
69618627 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATTAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
69618692 ATATGTGATAAGGCCTAATGGCCAATGTGAT
66 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
69618723 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--T
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTAT
*
69618786 ATATATGTGATAAGGCCTAATAGCCGATGTGAT
64 ATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
69618819 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
69618882 ATATGTGATAAGGCCTAATGGCCGATGTGAT
66 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * *
69618913 GAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT-AGATGTGAAAGTGTATA
1 GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA-ATGTGAAAGTGTATA
69618977 -A-ATGTGATAAG
65 TATATGTGATAAG
69618988 TCCCGAAGGG
Statistics
Matches: 338, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
93 1 0.00
94 141 0.42
95 1 0.00
96 152 0.45
98 43 0.13
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:69620445 original size:40 final size:40
Alignment explanation
Indices: 69620401--69620670 Score: 371
Period size: 40 Copynumber: 6.8 Consensus size: 40
69620391 GAGAATTGAG
* *
69620401 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTAGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
69620441 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
69620481 AGTGATGTATTCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
69620521 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
69620561 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* ** *
69620601 AGTGATATATCCGTG-CTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATGTATCCG-GACTAAGTCCCGAAGAGCATTCGTGCT
* * * * * *
69620641 GGTGTTATATCCGGGCTAGGTCCCAAAGAG
1 AGTGATGTATCCGGACTAAGTCCCGAAGAG
69620671 TAATCATGCT
Statistics
Matches: 206, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.00
40 204 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:69620670 original size:80 final size:80
Alignment explanation
Indices: 69620401--69620654 Score: 418
Period size: 80 Copynumber: 3.2 Consensus size: 80
69620391 GAGAATTGAG
*
69620401 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTAGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
69620466 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
*
69620481 AGTGATGTATTCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
69620546 AAGAGCATTCGTGCT
66 AAGAGCATTCGTGCT
* * **
69620561 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCG
1 AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
*
69620626 AAGAGCATTTGTGCT
66 AAGAGCATTCGTGCT
* * *
69620641 GGTGTTATATCCGG
1 AGTGATGTATCCGG
69620655 GCTAGGTCCC
Statistics
Matches: 163, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 163 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (80 bp):
AGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCG
AAGAGCATTCGTGCT
Found at i:69622666 original size:13 final size:13
Alignment explanation
Indices: 69622648--69622672 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69622638 TAATGGTATA
69622648 TTGAATCCATGAT
1 TTGAATCCATGAT
69622661 TTGAATCCATGA
1 TTGAATCCATGA
69622673 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:69624368 original size:49 final size:47
Alignment explanation
Indices: 69624283--69624572 Score: 422
Period size: 49 Copynumber: 6.1 Consensus size: 47
69624273 TTATTCATTG
*
69624283 GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
*
69624330 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGAT
* *
69624379 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
69624426 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGAT
* *
69624475 GAATGTGAAAGTGTATATATATATGATAAGGCCTAA-GAGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG-GCCAATGTGAT
* **
69624524 GAATGTGAAAGTGTATATATG-GATAAGGCCTAATAGCTGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
69624570 GAA
1 GAA
69624573 GTGTTATATG
Statistics
Matches: 225, Mismatches: 12, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
46 25 0.11
47 64 0.28
48 1 0.00
49 135 0.60
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.29
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGAT
Found at i:69624415 original size:47 final size:47
Alignment explanation
Indices: 69624283--69624906 Score: 594
Period size: 47 Copynumber: 13.6 Consensus size: 47
69624273 TTATTCATTG
* *
69624283 GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
69624330 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
69624379 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
69624426 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
69624475 GAATGTGAAAGTGTATATATATATGATAAGGCCTAA-GAGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATG-GCCGATGTGAT
* *
69624524 GAATGTGAAAGTGTATATATG-GATAAGGCCTAATAGCTGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * *
69624570 GAAGTGTTATA-TGGATACTA----AT-A-G-CTGAT-G-TGATGAATG-T
1 GAA-TGTGAAAGTGTATA-TATGTGATAAGGCCTAATGGCCGATG--TGAT
* * * * *
69624610 GAAAGTGTATATA-TGTGATA-AGGCCGA-ATGGCC-AAT-G--T-----AT
1 GAATGTG-A-A-AGTGT-ATATATG-TGATAAGGCCTAATGGCCGATGTGAT
69624650 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
69624699 GAATGTGAAAGT-TATATAT-T-AT-A-G--TAATAG-CGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
69624738 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
69624785 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * * *
69624832 GAATGTGAAATTGTATATATGTGACAGGGCCGAGTGGCCAACGTGAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
69624879 GGATGTGAAAGTGTATAAATGTGATAAG
1 GAATGTGAAAGTGTATATATGTGATAAG
69624907 TCCCGAAGGG
Statistics
Matches: 490, Mismatches: 42, Indels: 90
0.79 0.07 0.14
Matches are distributed among these distances:
37 1 0.00
38 3 0.01
39 34 0.07
40 33 0.07
41 11 0.02
42 8 0.02
43 6 0.01
44 5 0.01
45 1 0.00
46 43 0.09
47 194 0.40
48 2 0.00
49 149 0.30
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (47 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:69624452 original size:96 final size:96
Alignment explanation
Indices: 69624283--69624572 Score: 453
Period size: 96 Copynumber: 3.0 Consensus size: 96
69624273 TTATTCATTG
69624283 GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATAT
69624348 ATATGTGATAAGGCCTAATGGCCGATGTGAT
66 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* *
69624379 GAATATGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
69624444 ATATGTGATAAGGCCTAATGGCCAATGTGAT
66 ATATGTGATAAGGCCTAATGGCCGATGTGAT
* * *
69624475 GAATGTGAAAGTGTATATATATATGATAAGGCCTAA-GAGCCGATGTGATGAATGTGAAAGTG--
1 GAATGTGAAAGTG--TATATATGTGATAAGGCCAAATG-GCCAATGTGATGAATGTGAAAGTGTA
* *
69624537 TATATATG-GATAAGGCCTAATAGCTGATGTGAT
63 TATATATGTGATAAGGCCTAATGGCCGATGTGAT
69624570 GAA
1 GAA
69624573 GTGTTATATG
Statistics
Matches: 181, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
95 25 0.14
96 113 0.62
97 1 0.01
98 42 0.23
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.29
Consensus pattern (96 bp):
GAATGTGAAAGTGTATATATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:69624582 original size:38 final size:35
Alignment explanation
Indices: 69624532--69624606 Score: 107
Period size: 34 Copynumber: 2.1 Consensus size: 35
69624522 ATGAATGTGA
69624532 AAGTGTATATATGGATAAGGCCTAATAGCTGATGTGATG
1 AAGTGTATATATGGAT-A---CTAATAGCTGATGTGATG
69624571 AAGTGT-TATATGGATACTAATAGCTGATGTGATG
1 AAGTGTATATATGGATACTAATAGCTGATGTGATG
69624605 AA
1 AA
69624607 TGTGAAAGTG
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
34 20 0.56
37 1 0.03
38 9 0.25
39 6 0.17
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.32
Consensus pattern (35 bp):
AAGTGTATATATGGATACTAATAGCTGATGTGATG
Found at i:69624626 original size:145 final size:144
Alignment explanation
Indices: 69624283--69624895 Score: 605
Period size: 145 Copynumber: 4.5 Consensus size: 144
69624273 TTATTCATTG
*
69624283 GAATGTGAAAGT-G-TATATATGTGATAAGGCCA-AATGGCCAATGTGATGAATGTGAAAGTGTA
1 GAATGTGAAAGTGGATATATATGTGAT-AGG-CATAATGGCAAATGTGATGAATGTGAAAGTGTA
*
69624345 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
64 TATATATATGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
*
69624410 GAATGGCCAATGTGAT
129 GAATAGCCAATGTGAT
* * *
69624426 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTAT
1 GAATGTGAAAGTGGATATATATGTGAT-AGGCATAATGGCAAATGTGATGAATGTGAAAGTGTAT
*
69624491 ATATATATGATAAGGCCTAA-GAGCCGATGTGATGAATGTGAAAGTGTATATATG-GATAAGGCC
65 ATATATATGATAAGGCCTAATG-GCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
*
69624554 TAATAG-C----TGAT
129 GAATAGCCAATGTGAT
* **
69624565 G--TGATG-AAGT-G-T-TATATG-GATA--C-TAATAGCTGATGTGATGAATGTGAAAGTGTAT
1 GAATG-TGAAAGTGGATATATATGTGATAGGCATAATGGCAAATGTGATGAATGTGAAAGTGTAT
* * * *
69624620 AT--ATGTGATAAGGCCGAATGGCCAATGT-ATGAATGTGAAAGTGTATATATATGTGATAAGGC
65 ATATATATGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTG--TATATATGTGATAAGGC
* * *
69624682 CTAATGGCCGATGTGAT
128 CGAATAGCCAATGTGAT
* *
69624699 GAATGTGAAAGT---TATATAT-T-ATA-G--TAATAGC-GATGTGATGAATGTGAAAGTG--TA
1 GAATGTGAAAGTGGATATATATGTGATAGGCATAATGGCAAATGTGATGAATGTGAAAGTGTATA
* * *
69624753 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
66 TATATATGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGA
* *
69624818 ATGGCCGATGTGAT
131 ATAGCCAATGTGAT
* * ** * * * *
69624832 GAATGTGAAA-TTG-TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 GAATGTGAAAGTGGATATATATGTGATA-GGCATAATGGCAAATGTGATGAATGTGAAAGTGTAT
69624895 A
65 A
69624896 AATGTGATAA
Statistics
Matches: 413, Mismatches: 23, Indels: 68
0.82 0.05 0.13
Matches are distributed among these distances:
126 15 0.04
127 21 0.05
128 9 0.02
129 45 0.11
130 2 0.00
132 5 0.01
133 47 0.11
134 63 0.15
135 30 0.07
136 13 0.03
137 6 0.01
138 3 0.01
139 5 0.01
140 4 0.01
141 18 0.04
143 15 0.04
144 15 0.04
145 97 0.23
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (144 bp):
GAATGTGAAAGTGGATATATATGTGATAGGCATAATGGCAAATGTGATGAATGTGAAAGTGTATA
TATATATGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCGA
ATAGCCAATGTGAT
Found at i:69638222 original size:26 final size:26
Alignment explanation
Indices: 69638186--69638291 Score: 158
Period size: 26 Copynumber: 4.1 Consensus size: 26
69638176 TGAAATGCCC
*
69638186 ATCATGGAACATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAAACCATT
*
69638212 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
69638238 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
69638264 ATCATGGAACATCTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
69638290 AT
1 AT
69638292 TAATTTGTAC
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:69638265 original size:52 final size:52
Alignment explanation
Indices: 69638186--69638291 Score: 176
Period size: 52 Copynumber: 2.0 Consensus size: 52
69638176 TGAAATGCCC
* *
69638186 ATCATGGAACATTTACCTAAACTATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATCTACCTAACCCATT
* *
69638238 ATCATGGAATATTTACCTAATCCATTATCATGGAACATCTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATTATCATGGAACATCTACCTAACCCATT
69638290 AT
1 AT
69638292 TAATTTGTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.33
Consensus pattern (52 bp):
ATCATGGAACATTTACCTAAACCATTATCATGGAACATCTACCTAACCCATT
Found at i:69652417 original size:31 final size:31
Alignment explanation
Indices: 69652382--69652445 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
69652372 CCTTTTCATA
69652382 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
69652413 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
69652444 TT
1 TT
69652446 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:69652720 original size:23 final size:23
Alignment explanation
Indices: 69652660--69652778 Score: 186
Period size: 23 Copynumber: 5.1 Consensus size: 23
69652650 CCTAGCCTCT
69652660 TTTAATAACTGGGGCCA-AAGCCC
1 TTTAATAACTGGGG-CATAAGCCC
*
69652683 TTTTAATAGCTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
*
69652707 TTTAATAACCGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
69652730 TTCAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
69652753 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
69652776 TTT
1 TTT
69652779 TGCACTTCCT
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
23 69 0.78
24 19 0.22
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:69652854 original size:20 final size:20
Alignment explanation
Indices: 69652829--69652893 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
69652819 ATGAATACAC
*
69652829 CATGTGCATATGATACATAT
1 CATGTGCATATCATACATAT
* *
69652849 CATGTGTATATCATACATGT
1 CATGTGCATATCATACATAT
*
69652869 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAT
69652889 CATGT
1 CATGT
69652894 TTATCAAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTGCATATCATACATAT
Found at i:69652972 original size:25 final size:25
Alignment explanation
Indices: 69652930--69652977 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
69652920 ATATTTAAAC
* * *
69652930 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
69652955 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
69652978 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:69655401 original size:19 final size:18
Alignment explanation
Indices: 69655364--69655407 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
69655354 ATACTTACAG
69655364 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
69655381 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
69655400 TACTAATT
1 TAATAATT
69655408 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:69656844 original size:4 final size:4
Alignment explanation
Indices: 69656835--69656861 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
69656825 TAGGTGTATT
69656835 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
69656862 TTATATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:69657770 original size:29 final size:29
Alignment explanation
Indices: 69657728--69657835 Score: 155
Period size: 29 Copynumber: 3.8 Consensus size: 29
69657718 GCGAGCATGA
*
69657728 ATATGAATGTGATTTGGGCCTGATGGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
69657757 ATATAAATGTGATTTGGGCCTGATGGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
** * *
69657786 ATATAAATGCAAATTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTGATGGGCC
*
69657815 ATACAAATGTGA-TTGGGCCTG
1 ATATAAATGTGATTTGGGCCTG
69657836 GTGGACCAGA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 8 0.11
29 62 0.89
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTGATGGGCC
Found at i:69667887 original size:29 final size:29
Alignment explanation
Indices: 69667822--69667908 Score: 97
Period size: 29 Copynumber: 3.1 Consensus size: 29
69667812 GTGAGCATGA
* *
69667822 ATAT-AATGTGATTTGGGCCTAAAGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
69667850 ATATAAATATGATTTGGGCCTAATGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
* * * * *
69667879 ATGTGAATAT-AATTGGGTCTAGTGGGCC
1 ATATAAATATGATTTGGGCCTAATGGGCC
69667907 AT
1 AT
69667909 TTACAGGTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 21 0.41
29 30 0.59
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.31
Consensus pattern (29 bp):
ATATAAATATGATTTGGGCCTAATGGGCC
Found at i:69683516 original size:46 final size:45
Alignment explanation
Indices: 69683463--69683638 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
69683453 TGGTTGAGCA
*
69683463 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATAC-AAAG
* * * * * *
69683509 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGAGATGTA-ACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACAAAG
* * *
69683554 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAAG
* *
69683601 TCCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
69683639 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
45 8 0.08
46 63 0.60
47 33 0.31
48 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAAG
Found at i:69683619 original size:93 final size:93
Alignment explanation
Indices: 69683460--69683631 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
69683450 GGATGGTTGA
** *
69683460 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAACTCCCAACTCATTGAGT
69683525 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
69683553 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGC-AAACTCCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAACTCCCAA-CTCATTGAG
69683617 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
69683632 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 7 0.10
93 65 0.90
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAAACTCCCAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:69686576 original size:270 final size:270
Alignment explanation
Indices: 69686095--69686635 Score: 1073
Period size: 270 Copynumber: 2.0 Consensus size: 270
69686085 TTTAATTCAA
69686095 GATACATCAATCAAAATCATAAATCAATTAAAATTTATCCTAAATATGATATGAGAGTTTTTCAA
1 GATACATCAATCAAAATCATAAATCAATTAAAATTTATCCTAAATATGATATGAGAGTTTTTCAA
69686160 GAGAATAAGATGATTATTCAGGGATTTTTCTGATAATGAATGAATGCCCCCCACACTTAAGATAC
66 GAGAATAAGATGATTATTCAGGGATTTTTCTGATAATGAATGAATGCCCCCCACACTTAAGATAC
69686225 ACATTGCCCTCAATGTAAAAAGATAGATATTAGAATATAAAAATAAGATAGGGAGAGAAGTGAAA
131 ACATTGCCCTCAATGTAAAAAGATAGATATTAGAATATAAAAATAAGATAGGGAGAGAAGTGAAA
*
69686290 CTTCTTTTATGATGAATTCCTCGAACTAGAGTTTTGGAGTGTGATCGGTTCGAGAATGGAGGAGG
196 CTTCTTTTATGATGAATTCCTCGAACTAGAGTTTTGGAGTGTGATCAGTTCGAGAATGGAGGAGG
69686355 ATACTCCGGC
261 ATACTCCGGC
69686365 GATACATCAATCAAAATCATAAATCAATTAAAATTTATCCTAAATATGATATGAGAGTTTTTCAA
1 GATACATCAATCAAAATCATAAATCAATTAAAATTTATCCTAAATATGATATGAGAGTTTTTCAA
69686430 GAGAATAAGATGATTATTCAGGGATTTTTCTGATAATGAATGAATGCCCCCCACACTTAAGATAC
66 GAGAATAAGATGATTATTCAGGGATTTTTCTGATAATGAATGAATGCCCCCCACACTTAAGATAC
69686495 ACATTGCCCTCAATGTAAAAAGATAGATATTAGAATATAAAAATAAGATAGGGAGAGAAGTGAAA
131 ACATTGCCCTCAATGTAAAAAGATAGATATTAGAATATAAAAATAAGATAGGGAGAGAAGTGAAA
69686560 CTTCTTTTATGATGAATTCCTCGAACTAGAGTTTTGGAGTGTGATCAGTTCGAGAATGGAGGAGG
196 CTTCTTTTATGATGAATTCCTCGAACTAGAGTTTTGGAGTGTGATCAGTTCGAGAATGGAGGAGG
69686625 ATACTCCGGC
261 ATACTCCGGC
69686635 G
1 G
69686636 GTCGTAGAGG
Statistics
Matches: 270, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
270 270 1.00
ACGTcount: A:0.38, C:0.13, G:0.19, T:0.29
Consensus pattern (270 bp):
GATACATCAATCAAAATCATAAATCAATTAAAATTTATCCTAAATATGATATGAGAGTTTTTCAA
GAGAATAAGATGATTATTCAGGGATTTTTCTGATAATGAATGAATGCCCCCCACACTTAAGATAC
ACATTGCCCTCAATGTAAAAAGATAGATATTAGAATATAAAAATAAGATAGGGAGAGAAGTGAAA
CTTCTTTTATGATGAATTCCTCGAACTAGAGTTTTGGAGTGTGATCAGTTCGAGAATGGAGGAGG
ATACTCCGGC
Found at i:69691757 original size:17 final size:18
Alignment explanation
Indices: 69691735--69691769 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
69691725 TCACATTGAA
69691735 GTGTTTT-AGTGAAAACT
1 GTGTTTTCAGTGAAAACT
*
69691752 GTGTTTTCATTGAAAACT
1 GTGTTTTCAGTGAAAACT
69691770 CTTCTCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.43
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACT
Found at i:69692894 original size:29 final size:29
Alignment explanation
Indices: 69692803--69692915 Score: 97
Period size: 29 Copynumber: 3.9 Consensus size: 29
69692793 TCCATACATG
* * *
69692803 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATAAT
* * *
69692831 CAAATGGCCCATTTGGCCCAATTCATAAT
1 CATATGGCCCACTAGGCCCAATTCATAAT
* * *
69692860 CTTATGGCTCACTAGGCCCAATTCACT-TT
1 CATATGGCCCACTAGGCCCAATTCA-TAAT
*
69692889 CATATGGCCCATTAGGCCCGAA-TCATA
1 CATATGGCCCACTAGGCCC-AATTCATA
69692916 TTATATTCAT
Statistics
Matches: 66, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
28 18 0.27
29 45 0.68
30 3 0.05
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.28
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATAAT
Found at i:69694405 original size:16 final size:16
Alignment explanation
Indices: 69694384--69694416 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69694374 AAAAATTCAA
69694384 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
*
69694400 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
69694416 G
1 G
69694417 GGCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:69697347 original size:29 final size:29
Alignment explanation
Indices: 69697266--69697380 Score: 108
Period size: 29 Copynumber: 4.0 Consensus size: 29
69697256 TACATACATG
* *
69697266 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * *
69697294 CAAATGGCCCATCT-GGCCTAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* **
69697323 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * *
69697352 CATATGGCTCATTAGGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
69697381 ATACTCATGC
Statistics
Matches: 67, Mismatches: 17, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
28 16 0.24
29 51 0.76
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:69698846 original size:16 final size:16
Alignment explanation
Indices: 69698821--69698853 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
69698811 AAAAATTCAA
*
69698821 GATTTTAGGATTTTTG
1 GATTTCAGGATTTTTG
69698837 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
69698853 G
1 G
69698854 GTCGTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.27, T:0.52
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:69701641 original size:43 final size:43
Alignment explanation
Indices: 69701571--69701652 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 43
69701561 TGTGATTCCA
** * *
69701571 ATATGTGTTTACAAGTAAGACCCTGTCTGGGACAGTGGCTTCG
1 ATATGTGACTACAAGTAAAACCATGTCTGGGACAGTGGCTTCG
* *
69701614 ATATGTGACTACATGTAAAACCATGTCTGGGACATTGGC
1 ATATGTGACTACAAGTAAAACCATGTCTGGGACAGTGGC
69701653 ATTGTACGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (43 bp):
ATATGTGACTACAAGTAAAACCATGTCTGGGACAGTGGCTTCG
Found at i:69704515 original size:42 final size:43
Alignment explanation
Indices: 69704437--69704575 Score: 124
Period size: 42 Copynumber: 3.2 Consensus size: 43
69704427 CCAAACGTGA
* * * *
69704437 TCTTACATGTAATCAAATATCGATGCCAATGTCCCAGATAGGG
1 TCTTACATGAAATCAAATATCAATGCCAATCTCCCAGACAGGG
* *
69704480 TCTTACATGAAATCATATA-CAATGCCAATCTCCCAGACATGG
1 TCTTACATGAAATCAAATATCAATGCCAATCTCCCAGACAGGG
* * * *
69704522 TCTTACACGTAAATCTCAA-ATCGATGCCAA-CGTCCTAGAC-GTGG
1 TCTTACATG-AAATC-AAATATCAATGCCAATC-TCCCAGACAG-GG
69704566 TCTTACATGA
1 TCTTACATGA
69704576 CATCTCATAT
Statistics
Matches: 78, Mismatches: 13, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
42 27 0.35
43 25 0.32
44 26 0.33
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TCTTACATGAAATCAAATATCAATGCCAATCTCCCAGACAGGG
Found at i:69704575 original size:86 final size:85
Alignment explanation
Indices: 69704412--69704575 Score: 199
Period size: 86 Copynumber: 1.9 Consensus size: 85
69704402 GAGAAGCTTG
* * *
69704412 TACAATGCCAACGTCCCAAACGTGATCTTACATGTAATCAAATATCGATGCCAATGTCCCAGATA
1 TACAATGCCAACGTCCCAAACATGATCTTACACGTAATCAAATATCGATGCCAACGTCCCAGATA
69704477 GGGTCTTACATGAAATCATA
66 GGGTCTTACATGAAATCATA
* * * *
69704497 TACAATGCCAATC-TCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAACGTCCTAG
1 TACAATGCCAA-CGTCCCAAACATGATCTTACACGT-AATC-AAATATCGATGCCAACGTCCCAG
*
69704560 A-CGTGGTCTTACATGA
63 ATAG-GGTCTTACATGA
69704576 CATCTCATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
85 30 0.45
86 35 0.52
87 2 0.03
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (85 bp):
TACAATGCCAACGTCCCAAACATGATCTTACACGTAATCAAATATCGATGCCAACGTCCCAGATA
GGGTCTTACATGAAATCATA
Found at i:69707527 original size:35 final size:35
Alignment explanation
Indices: 69707468--69707535 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
69707458 CTTTTTGATA
*
69707468 TTAATTGAAAGAAGTATCGATGTTGTGGCGGGATG
1 TTAATTGAAAGAAGTATAGATGTTGTGGCGGGATG
*
69707503 TTAATTGAAAGAAGTATTAG-TGTTGTGGTGGGA
1 TTAATTGAAAGAAGTA-TAGATGTTGTGGCGGGA
69707536 ATTGTCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 28 0.93
36 2 0.07
ACGTcount: A:0.29, C:0.03, G:0.34, T:0.34
Consensus pattern (35 bp):
TTAATTGAAAGAAGTATAGATGTTGTGGCGGGATG
Found at i:69709229 original size:27 final size:27
Alignment explanation
Indices: 69709198--69709646 Score: 531
Period size: 27 Copynumber: 16.6 Consensus size: 27
69709188 TTAGTTTACC
*
69709198 AAATTACCAAAATAACCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
69709225 AAATTACTAAAATACCCTTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
69709252 AAATCACCAAAATACTCC-TGGTTTGTA
1 AAATTACCAAAATAC-CCTTGGTTTGTA
* **
69709279 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
69709306 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
69709333 AAATTACTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
69709360 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** **
69709387 AAATTACCAAAATACCCTTACTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
69709414 AAATTATCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
69709441 AAATTACTAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
69709468 AAATTACCAAAATACCCATGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
69709495 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
69709522 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
69709549 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
** * **
69709576 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * **
69709603 AAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
69709630 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
69709647 CTAATTTACA
Statistics
Matches: 362, Mismatches: 58, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 359 0.99
28 2 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:69709380 original size:108 final size:108
Alignment explanation
Indices: 69709191--69709565 Score: 588
Period size: 108 Copynumber: 3.5 Consensus size: 108
69709181 GAGTACTTTA
* * * *
69709191 GTTTACCAAATTACCAAAATAACCTTGGTTTGTAAAATTACTAAAATACCCTTGATTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
* *
69709256 CACCAAAATACTCCTGGTTTGTAAAATTACCAAAATACCATTG
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* *
69709299 GTTTACAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCATTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
*
69709364 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTA
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
* * *
69709407 CTTTACAAAATTATCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTATAAAAT
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
* *
69709472 TACCAAAATACCCATGGTTTGTAAAATTACCAAAATACCCTTG
66 CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
** * *
69709515 GTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCC
1 GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCC
69709566 CTGATTTGTG
Statistics
Matches: 246, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 246 1.00
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (108 bp):
GTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATAAAAT
CACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG
Found at i:69709699 original size:27 final size:27
Alignment explanation
Indices: 69709198--69709701 Score: 291
Period size: 27 Copynumber: 18.7 Consensus size: 27
69709188 TTAGTTTACC
* * *
69709198 AAATTACCAAAATAACCT-TGGTTTGTA
1 AAATTACCAAAATACCCTCT-ATTTATA
*
69709225 AAATTACTAAAATACCCT-TGATTTATA
1 AAATTACCAAAATACCCTCT-ATTTATA
* ** *
69709252 AAATCACCAAAATACTCCT-GGTTTGTA
1 AAATTACCAAAATAC-CCTCTATTTATA
* * *
69709279 AAATTACCAAAATACCAT-TGGTTTACA
1 AAATTACCAAAATACCCTCT-ATTTATA
* *
69709306 AAATTACCAAAATACCCT-TGGTTTGTA
1 AAATTACCAAAATACCCTCT-ATTTATA
* * *
69709333 AAATTACTAAAATACCAT-TGGTTTATA
1 AAATTACCAAAATACCCTCT-ATTTATA
* * *
69709360 AAATCACCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTCT-ATTTATA
*
69709387 AAATTACCAAAATACCCT-TACTTTACA
1 AAATTACCAAAATACCCTCTA-TTTATA
* * *
69709414 AAATTATCAAAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTCT-ATTTATA
* *
69709441 AAATTACTAAAATACCC-CTGGTTTATA
1 AAATTACCAAAATACCCTCT-ATTTATA
** *
69709468 AAATTACCAAAATACCCAT-GGTTTGTA
1 AAATTACCAAAATACCC-TCTATTTATA
* *
69709495 AAATTACCAAAATACCCT-TGGTTTGTA
1 AAATTACCAAAATACCCTCT-ATTTATA
*
69709522 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCTA-TTTATA
* *
69709549 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTCT-ATTTATA
** * * *
69709576 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCTATTTATA
** * * *
69709603 AAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCTATTTATA
* *
69709630 AAATTACCAAAGTACCC-CTAATTTACA
1 AAATTACCAAAATACCCTCT-ATTTATA
* * **** *
69709657 GAATTATCGTTTTACCCTCTATTTACA
1 AAATTACCAAAATACCCTCTATTTATA
*
69709684 AGATTACCAAAATACCCT
1 AAATTACCAAAATACCCT
69709702 TATAGGGTAG
Statistics
Matches: 393, Mismatches: 68, Indels: 32
0.80 0.14 0.06
Matches are distributed among these distances:
26 4 0.01
27 382 0.97
28 7 0.02
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCTATTTATA
Found at i:69709723 original size:27 final size:27
Alignment explanation
Indices: 69709693--69709916 Score: 234
Period size: 27 Copynumber: 8.3 Consensus size: 27
69709683 AAGATTACCA
*
69709693 AAATACCCTTATAGGGTAGAAATACTG
1 AAATACCCCTATAGGGTAGAAATACTG
* * *
69709720 AAATACCCCTGTAAGGTAAAAATA-TCG
1 AAATACCCCTATAGGGTAGAAATACT-G
* * *
69709747 AAATACCCCTGTAAGGTAGAAATACCG
1 AAATACCCCTATAGGGTAGAAATACTG
* * * *
69709774 AAATAACTCTATAGGGTAGAATTACTA
1 AAATACCCCTATAGGGTAGAAATACTG
* * **
69709801 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTATAGGGTAGAAATACTG
* *
69709828 AAATACCCTTGTAGGGTAGAAATACTG
1 AAATACCCCTATAGGGTAGAAATACTG
* *
69709855 AAATACCCCTATAAGGTAGAATTACTG
1 AAATACCCCTATAGGGTAGAAATACTG
* *
69709882 AAATACCCCTATAGGGTAGAATTACAG
1 AAATACCCCTATAGGGTAGAAATACTG
*
69709909 AGATACCC
1 AAATACCC
69709917 TTGTTGGGTA
Statistics
Matches: 167, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 166 0.99
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (27 bp):
AAATACCCCTATAGGGTAGAAATACTG
Found at i:69709897 original size:81 final size:80
Alignment explanation
Indices: 69709688--69709930 Score: 299
Period size: 81 Copynumber: 3.0 Consensus size: 80
69709678 TTTACAAGAT
* * * * * * *
69709688 TACCAAAATACCCTTATAGGGTAGAAATACTGAAATACCCCTGTAAGGTAAAAATATCGAAATAC
1 TACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-CAAAATAC
* *
69709753 CCCTGTAAGGTAGAAA
65 CCTTGTAGGGTAGAAA
* * *
69709769 TACCGAAATAACTCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCAAAATAC
1 TACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTA-CAAAATAC
69709834 CCTTGTAGGGTAGAAA
65 CCTTGTAGGGTAGAAA
* * * *
69709850 TACTGAAATACCCCTATAAGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACAGAGATAC
1 TACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACA-AAATAC
*
69709915 CCTTGTTGGGTA-AAA
65 CCTTGTAGGGTAGAAA
69709930 T
1 T
69709931 TACCATTTTA
Statistics
Matches: 140, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
80 6 0.04
81 134 0.96
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (80 bp):
TACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACAAAATACC
CTTGTAGGGTAGAAA
Found at i:69710488 original size:25 final size:25
Alignment explanation
Indices: 69710460--69710523 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
69710450 CATTCACATT
*
69710460 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
69710485 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
* *
69710510 TTGATTCTGGTTCT
1 CTGATTCTGATTCT
69710524 AATTCTGGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:69710492 original size:31 final size:31
Alignment explanation
Indices: 69710457--69710628 Score: 106
Period size: 31 Copynumber: 5.5 Consensus size: 31
69710447 TTGCATTCAC
* *
69710457 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTAATTCTGATTCTGTTACCTGATTCTG
* * *
69710488 ATTCTGATTCTG-TTACCTAATT--TTGATTCTG
1 ATTCTAATTCTGATT--CT-GTTACCTGATTCTG
* * *
69710519 GTTCTAATTCTGGTTCTGTTACCTGATACTG
1 ATTCTAATTCTGATTCTGTTACCTGATTCTG
* *
69710550 ATTCTAATTTTG-TTACCTAATT--CTGATTCTG
1 ATTCTAATTCTGATT--CT-GTTACCTGATTCTG
* *
69710581 ATTCTAATTTTGATTCTGTCACCTGATTCT-
1 ATTCTAATTCTGATTCTGTTACCTGATTCTG
* *
69710611 ATTTTTGATTCTGATTCT
1 A-TTCTAATTCTGATTCT
69710629 CATTTTGATT
Statistics
Matches: 111, Mismatches: 17, Indels: 26
0.72 0.11 0.17
Matches are distributed among these distances:
29 3 0.03
30 9 0.08
31 87 0.78
32 8 0.07
33 4 0.04
ACGTcount: A:0.19, C:0.17, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTAATTCTGATTCTGTTACCTGATTCTG
Found at i:69710564 original size:62 final size:62
Alignment explanation
Indices: 69710457--69710607 Score: 230
Period size: 62 Copynumber: 2.4 Consensus size: 62
69710447 TTGCATTCAC
* * *
69710457 ATTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTTTGATTCTG
1 ATTCTAATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTG
* * *
69710519 GTTCTAATTCTGGTTCTGTTACCTGATACTGATTCTAATTTTGTTACCTAATTCTGATTCTG
1 ATTCTAATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTG
* *
69710581 ATTCTAATTTTGATTCTGTCACCTGAT
1 ATTCTAATTCTGATTCTGTTACCTGAT
69710608 TCTATTTTTG
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 79 1.00
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (62 bp):
ATTCTAATTCTGATTCTGTTACCTGATACTGATTCTAATTCTGTTACCTAATTCTGATTCTG
Found at i:69710582 original size:37 final size:37
Alignment explanation
Indices: 69710541--69710635 Score: 93
Period size: 37 Copynumber: 2.6 Consensus size: 37
69710531 GTTCTGTTAC
* *
69710541 CTGATACTGATTCTAATTTTGTTACCTAATTCTGA-TT
1 CTGATTCTGATTCTAATTTTGTCACCTAATTCT-ATTT
* * * * *
69710578 CTGATTCTAATTTTGATTCTGTCACCTGATTCTATTT
1 CTGATTCTGATTCTAATTTTGTCACCTAATTCTATTT
* *
69710615 TTGATTCTGATTCTCATTTTG
1 CTGATTCTGATTCTAATTTTG
69710636 ATTCTAGTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
36 1 0.02
37 44 0.98
ACGTcount: A:0.20, C:0.17, G:0.12, T:0.52
Consensus pattern (37 bp):
CTGATTCTGATTCTAATTTTGTCACCTAATTCTATTT
Found at i:69710626 original size:18 final size:18
Alignment explanation
Indices: 69710603--69710640 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
69710593 ATTCTGTCAC
69710603 CTGATTCT-ATTTTTGATT
1 CTGATTCTCA-TTTTGATT
69710621 CTGATTCTCATTTTGATT
1 CTGATTCTCATTTTGATT
69710639 CT
1 CT
69710641 AGTTTTGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.16, C:0.16, G:0.11, T:0.58
Consensus pattern (18 bp):
CTGATTCTCATTTTGATT
Found at i:69712536 original size:101 final size:101
Alignment explanation
Indices: 69712330--69712711 Score: 340
Period size: 101 Copynumber: 3.8 Consensus size: 101
69712320 TGTGAGAACA
* * **** * * *
69712330 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTTAGGTCACATGTGTAGTACT
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG-TTTCGATTACATGTGTAGTACT
* * *
69712395 AATTGCAGGCTACTACGTGCACTAGATTGTTAGGTCG
65 AAGTGCAGGCTACTACGTGCACCAGATTGATAGGTCG
*
69712432 CATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAGTTTCGATTACATGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATTACATGTGTAGTACTA
* * * * * *
69712497 AGTACAGCCTACTATGTGTACCGGATTGATAGGTTG
66 AGTGCAGGCTACTACGTGCACCAGATTGATAGGTCG
* **
69712533 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACCC-ATTAACTTCGA-T-CATGAGTGTAGTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-TAGTTTCGATTACAT--GTGTAGTA
* * * * * *
69712595 CTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCA
63 CTAAGTGCAGGCTACTACGTGCACCAGATTGATAGGTCG
* * * * * * * * * * *
69712634 CGTGTGTAGTGCTACGTGCAGGCTACTACGTGTACCAGATTG-ATAGGTTGCATGTGTAGTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATTACATGTGTAGTACTA
*
69712698 AGTGTAGGCTACTA
66 AGTGCAGGCTACTA
69712712 TGCGTACCAG
Statistics
Matches: 228, Mismatches: 46, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
99 3 0.01
100 28 0.12
101 158 0.69
102 39 0.17
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (101 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATTACATGTGTAGTACTA
AGTGCAGGCTACTACGTGCACCAGATTGATAGGTCG
Found at i:69712719 original size:50 final size:50
Alignment explanation
Indices: 69712330--69712722 Score: 313
Period size: 50 Copynumber: 7.8 Consensus size: 50
69712320 TGTGAGAACA
* *** ** **
69712330 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT--TGATAGGTTG
* * * * * *
69712382 CATGTGTAGTACTAATTGCAGGCTACTACGTGCACTAGATTGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTTG
* * * * * * * *
69712432 CATGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAGTTTCGATTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-ATAGGTTG
* * *
69712483 CATGTGTAGTACTAAGTACAGCCTACTATGTGTACCGGATTGATAGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTTG
** * * ** *
69712533 CATGTGTAGTACTAAGTGCAGGCTACTATGCATACC-CATTAACTTCGAT-
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA-TAGGTTG
** * * * **
69712582 CATGAGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCA
1 CAT--GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTTG
* * * *
69712634 CGTGTGTAGTGCTACGTGCAGGCTACTACGTGTACCAGATTGATAGGTTG
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTTG
* *
69712684 CATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
69712723 GAGCTTTGGT
Statistics
Matches: 268, Mismatches: 67, Indels: 14
0.77 0.19 0.04
Matches are distributed among these distances:
49 7 0.03
50 153 0.57
51 70 0.26
52 38 0.14
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAGGTTG
Found at i:69713596 original size:179 final size:179
Alignment explanation
Indices: 69713286--69713610 Score: 437
Period size: 179 Copynumber: 1.8 Consensus size: 179
69713276 TTCATGATGT
*
69713286 GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATAGGAACTGTCGGACAGTGAAATAAGGGTA
1 GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATAGGAACTGTCGGACAGCGAAATAAGGGTA
* * **
69713351 TATTTAATGGATAAACTGTACTAATTGGATGAATGAAAAATTCTGAAAATTTTATGGTAGGAATA
66 TATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAGGAATA
*
69713416 TATGTGAGTCTCGTTTTTTTTAAACTATCATTTATTAATTTGGAGTCCC
131 TATGTGAGTCTAGTTTTTTTTAAACTATCATTTATTAATTTGGAGTCCC
* * * * *
69713465 GTACCATGAGATAAATAATTTTTATTGAAGAGAAG-TCA-GAATTGTTGGATAGCGAAAT-AGAG
1 GTACCATGAGATAAATAATTTTTAGTAAAGA-AAGAT-AGGAACTGTCGGACAGCGAAATAAG-G
* *
69713527 GTA-ACTTTAATGAATAAACTGTACTAATTGGCTAAACAAAAAATTC-GAAAATTTTTTTGGTTA
63 GTATA-TTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAA-TTTTATGG-TA
69713590 -GAATATATGTGAGTCTAGTTT
125 GGAATATATGTGAGTCTAGTTT
69713611 CGAGGAAAAT
Statistics
Matches: 127, Mismatches: 13, Indels: 12
0.84 0.09 0.08
Matches are distributed among these distances:
178 8 0.06
179 113 0.89
180 6 0.05
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (179 bp):
GTACCATGAGATAAATAATTTTTAGTAAAGAAAGATAGGAACTGTCGGACAGCGAAATAAGGGTA
TATTTAATGAATAAACTGTACTAATTGGATAAACAAAAAATTCTGAAAATTTTATGGTAGGAATA
TATGTGAGTCTAGTTTTTTTTAAACTATCATTTATTAATTTGGAGTCCC
Found at i:69721761 original size:50 final size:50
Alignment explanation
Indices: 69721661--69721956 Score: 240
Period size: 50 Copynumber: 5.8 Consensus size: 50
69721651 ATTGTGAGAA
* *
69721661 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGACAG-TT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGT
* * * * *
69721713 CACGTGTATAGTCCTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * * * *
69721763 CGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAGTTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-CCAGATTG-TTAGGT
* * * * *
69721814 TACGTGTGTAGTACTAAGTACAGGCTACTATGTGTACCGGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
** * * * *
69721864 TGCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCTG-TTAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--GTTAGGT
* * * *
69721915 CACTTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
69721957 GGATAAGTAA
Statistics
Matches: 192, Mismatches: 44, Indels: 16
0.76 0.17 0.06
Matches are distributed among these distances:
48 3 0.02
49 5 0.03
50 79 0.41
51 76 0.40
52 29 0.15
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:69721847 original size:26 final size:26
Alignment explanation
Indices: 69721818--69721899 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
69721808 TTTGATTACG
69721818 TGTGTAGTACTAAGTACAGGCTACTA
1 TGTGTAGTACTAAGTACAGGCTACTA
* * * * *
69721844 TGTGTACCGGA-T-TG-ATAGGTTGC-A
1 TGTGTA--GTACTAAGTACAGGCTACTA
*
69721868 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTACAGGCTACTA
69721894 TGTGTA
1 TGTGTA
69721900 CCTGTTAACT
Statistics
Matches: 39, Mismatches: 11, Indels: 12
0.63 0.18 0.19
Matches are distributed among these distances:
22 2 0.05
23 1 0.03
24 8 0.21
25 11 0.28
26 14 0.36
27 1 0.03
28 2 0.05
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTACAGGCTACTA
Found at i:69721863 original size:101 final size:103
Alignment explanation
Indices: 69721663--69721901 Score: 304
Period size: 101 Copynumber: 2.3 Consensus size: 103
69721653 TGTGAGAACA
* ** * *
69721663 CATGTGTAGTACTATGTGCAGGCTACTATGTGT-TTAAGACAGTTTTAGGTCACGTGTATAGTCC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGACAGTTTTAGATCACGTGTATAGTAC
** *
69721727 TAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCG
66 TAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCG
* * * * * *
69721765 TATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-ATAGTTTT-GATTACGTGTGTAGTAC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGACAGTTTTAGATCACGTGTATAGTAC
* * *
69721828 TAAGTACAGGCTACTATGTGTACCGGATTGATAGGTTG
66 TAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCG
69721866 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACC
69721902 TGTTAACTTC
Statistics
Matches: 117, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
101 79 0.68
102 37 0.32
103 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (103 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAGACAGTTTTAGATCACGTGTATAGTAC
TAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCG
Found at i:69721923 original size:101 final size:101
Alignment explanation
Indices: 69721712--69721961 Score: 302
Period size: 101 Copynumber: 2.5 Consensus size: 101
69721702 CAGTTTTAGG
* * ** * *
69721712 TCACGTGTATAGTCCTAAGTGTAGGCTACTACGTGTACCAGATTGTTAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
** *
69721777 TAAGTGCAGGCTACTATGCGTACCCAATAGTTTTGA
66 TAAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
* * * *
69721813 TTACGTGTGTAGTACTAAGTACAGGCTACTATGTGTACCGGATTGATAGGTTGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
* ***
69721878 TAAGTGCAGGCTACTATGTGTACCTGTTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
* ** * *
69721914 TCACTTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGATA
1 TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATA
69721962 AGTAACGTGT
Statistics
Matches: 124, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
101 124 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCAATAACTTCGA
Found at i:69723553 original size:32 final size:37
Alignment explanation
Indices: 69723502--69723701 Score: 193
Period size: 39 Copynumber: 5.4 Consensus size: 37
69723492 ATATCCGGAT
69723502 TAAGTTCCGAAGGCATTCGTGCGAGTTGTTAAT-CGGG
1 TAAG-TCCGAAGGCATTCGTGCGAGTTGTTAATCCGGG
*
69723539 T-TGT-CG-AGGC-TTCGTGCGAGTTGTTAATCCGGG
1 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAATCCGGG
*
69723572 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAA---GGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAATCCGGG
*
69723606 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGG
1 TAAGT-CCGAAGGCATTCGTGCGAGTTGTT-AATCCGGG
* * * *
69723645 TTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGG
1 -TAAGT-CCGAAGGCATTCGTGCGAGTT-GTTAATCCGGG
*
69723684 CTATGTCCCGAAGGCATT
1 -TAAGT-CCGAAGGCATT
69723702 TGAACGAGGA
Statistics
Matches: 141, Mismatches: 10, Indels: 22
0.82 0.06 0.13
Matches are distributed among these distances:
32 18 0.13
33 9 0.06
34 11 0.08
35 26 0.18
36 7 0.05
37 18 0.13
39 35 0.25
40 17 0.12
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (37 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTGTTAATCCGGG
Found at i:69723587 original size:69 final size:72
Alignment explanation
Indices: 69723494--69723671 Score: 208
Period size: 69 Copynumber: 2.5 Consensus size: 72
69723484 AAGTGAATAT
*
69723494 ATCCGGATTAAGTTCCGAAGGCATTCGTGCGAGTTGTTAATCGGGTT-GT-CG-AGGC-TTCGTG
1 ATCCGGGTTAAG-TCCGAAGGCATTCGTGCGAGTTGTTAA---GGTTAGTCCGAAGGCATTCGTG
69723555 CGAGTTGTT-A
62 CGAGTTGTTAA
*
69723565 ATCCGGG-TAAGTCCGAAGGCATTCGTGCGAGTTGTTAAGGTTAAGTCCCGAAGGCATTTGTGCG
1 ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTGTTAAGGTT-AGT-CCGAAGGCATTCGTGCG
69723629 AGTTGTTAA
64 AGTTGTTAA
* *
69723638 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTT
1 ATCCGGGTTAAGT-CCGAAGGCATTCGTGCGAGTT
69723672 ACTAAATCCG
Statistics
Matches: 94, Mismatches: 4, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
66 4 0.04
68 2 0.02
69 27 0.29
70 6 0.06
71 10 0.11
72 14 0.15
73 8 0.09
74 12 0.13
75 11 0.12
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (72 bp):
ATCCGGGTTAAGTCCGAAGGCATTCGTGCGAGTTGTTAAGGTTAGTCCGAAGGCATTCGTGCGAG
TTGTTAA
Found at i:69723628 original size:35 final size:35
Alignment explanation
Indices: 69723501--69723637 Score: 160
Period size: 35 Copynumber: 3.9 Consensus size: 35
69723491 TATATCCGGA
69723501 TTAAGTTCCGAAGGCATTCGTGCGAGTTGTTAATCGGG
1 TTAAG-TCCGAAGGCATTCGTGCGAGTTGTTAA-C-GG
69723539 TT--GT-CG-AGGC-TTCGTGCGAGTTGTTAATCCGG
1 TTAAGTCCGAAGGCATTCGTGCGAGTTGTTAA--CGG
*
69723571 GTAAGTCCGAAGGCATTCGTGCGAGTTGTTAA-GG
1 TTAAGTCCGAAGGCATTCGTGCGAGTTGTTAACGG
*
69723605 TTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAA
1 TTAAGT-CCGAAGGCATTCGTGCGAGTTGTTAA
69723638 ATCCGGGTTA
Statistics
Matches: 88, Mismatches: 4, Indels: 17
0.81 0.04 0.16
Matches are distributed among these distances:
32 20 0.23
33 5 0.06
34 11 0.12
35 28 0.32
36 5 0.06
37 17 0.19
38 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.32, T:0.31
Consensus pattern (35 bp):
TTAAGTCCGAAGGCATTCGTGCGAGTTGTTAACGG
Found at i:69723647 original size:40 final size:39
Alignment explanation
Indices: 69723455--69723703 Score: 215
Period size: 40 Copynumber: 6.7 Consensus size: 39
69723445 TTGAATGCTG
* * *
69723455 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTG-TTA-A
* * *
69723495 TCCGGATTAAGTTCCGAAGGCATTCGTGCGAGTTGTTAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAA
*
69723534 T-CGGGTT--GT--CG-AGGC-TTCGTGCGAGTTGTTAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAA
*
69723566 TCCGGG-TAAGT-CCGAAGGCATTCGTGCGAGTTGTTAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAA
69723603 ----GGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTT-AA
* * * *
69723639 TCCGGGTTATGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTT-GTTAA
* *
69723678 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
69723704 AACGAGGAGC
Statistics
Matches: 179, Mismatches: 13, Indels: 34
0.79 0.06 0.15
Matches are distributed among these distances:
32 19 0.11
33 10 0.06
34 9 0.05
35 25 0.14
36 8 0.04
37 17 0.09
38 5 0.03
39 35 0.20
40 43 0.24
41 8 0.04
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTGTTAA
Found at i:69729408 original size:16 final size:16
Alignment explanation
Indices: 69729372--69729404 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
69729362 ATAGAATAGA
69729372 ATAATAATATAAATAT
1 ATAATAATATAAATAT
*
69729388 ATAATGATAT-AATAT
1 ATAATAATATAAATAT
69729403 AT
1 AT
69729405 TAATTTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
ATAATAATATAAATAT
Found at i:69730354 original size:32 final size:34
Alignment explanation
Indices: 69730280--69730354 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 34
69730270 CCACTACATA
*
69730280 ATATGGTAATATAGTATATAATTATTACTAAAAG
1 ATATGGTAATATAGTATATAATTAGTACTAAAAG
69730314 ATAT--TAATATA-T-TATAGATT-GTACTAAAAG
1 ATATGGTAATATAGTATATA-ATTAGTACTAAAAG
69730344 ATATGGTAATA
1 ATATGGTAATA
69730355 CCACATATAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
30 17 0.46
31 4 0.11
32 12 0.32
34 4 0.11
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.39
Consensus pattern (34 bp):
ATATGGTAATATAGTATATAATTAGTACTAAAAG
Found at i:69730509 original size:58 final size:57
Alignment explanation
Indices: 69730404--69730513 Score: 125
Period size: 58 Copynumber: 1.9 Consensus size: 57
69730394 TTTGATATAA
* * * *
69730404 TATTACAAATTATAATAATATATATTATGTATTCTTAGTATAGCATATGATATAGTAT
1 TATTACAAATTATAATAATATATATTATATATTATTAATAAAGCATAT-ATATAGTAT
* *
69730462 TATTACATAA-TATAATAATATATTTTATAT-TTATTAATACAATCATATATAT
1 TATTACA-AATTATAATAATATATATTATATATTATTAATA-AAGCATATATAT
69730514 GACATTAATC
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
57 11 0.25
58 31 0.70
59 2 0.05
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (57 bp):
TATTACAAATTATAATAATATATATTATATATTATTAATAAAGCATATATATAGTAT
Found at i:69731047 original size:21 final size:21
Alignment explanation
Indices: 69731008--69731047 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
69730998 AACTCTTAAT
* * *
69731008 ATATTATATTATATGATATGG
1 ATATAATATTACATAATATGG
69731029 ATATAATATTACATAATAT
1 ATATAATATTACATAATAT
69731048 AATATAACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (21 bp):
ATATAATATTACATAATATGG
Found at i:69731049 original size:15 final size:17
Alignment explanation
Indices: 69731029--69731066 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
69731019 TATGATATGG
*
69731029 ATATAATATTAC-A-TA
1 ATATAATATAACAATTA
69731044 ATATAATATAACAATTA
1 ATATAATATAACAATTA
69731061 ATATAA
1 ATATAA
69731067 CTTTTAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 11 0.55
16 1 0.05
17 8 0.40
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (17 bp):
ATATAATATAACAATTA
Found at i:69744466 original size:5 final size:5
Alignment explanation
Indices: 69744458--69744494 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
69744448 AGAAGAGAAC
69744458 GGGAA GGGAA -GGAA -GGAA GGGAA GGGAA -GGAA GGGAA
1 GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA GGGAA
69744495 AAAAGAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 12 0.40
5 18 0.60
ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00
Consensus pattern (5 bp):
GGGAA
Found at i:69744471 original size:9 final size:9
Alignment explanation
Indices: 69744459--69744494 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
69744449 GAAGAGAACG
69744459 GGAAGGGAA
1 GGAAGGGAA
69744468 GGAA-GGAA
1 GGAAGGGAA
69744476 GGGAAGGGAA
1 -GGAAGGGAA
69744486 GGAAGGGAA
1 GGAAGGGAA
69744495 AAAAGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 4 0.16
9 17 0.68
10 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (9 bp):
GGAAGGGAA
Found at i:69757984 original size:22 final size:21
Alignment explanation
Indices: 69757946--69757999 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
69757936 AAAATCATAC
* *
69757946 AAAAAAAGAATATATATAGAA
1 AAAAAAAGAATAAATATACAA
* *
69757967 AAAAAAAGATTGAAATATACAT
1 AAAAAAAGAAT-AAATATACAA
*
69757989 AAAAAATGAAT
1 AAAAAAAGAAT
69758000 TTTTTTTAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (21 bp):
AAAAAAAGAATAAATATACAA
Found at i:69764150 original size:39 final size:40
Alignment explanation
Indices: 69763993--69764217 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
69763983 GCTACTCGTT
* *
69763993 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
* *
69764033 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGAA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
69764073 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
69764113 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * *
69764152 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GCTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAG-TAAC-TCGCA
*
69764193 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
69764218 CATCATTCAA
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 114 0.70
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69764177 original size:119 final size:120
Alignment explanation
Indices: 69763993--69764217 Score: 280
Period size: 119 Copynumber: 1.9 Consensus size: 120
69763983 GCTACTCGTT
* *
69763993 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
69764058 ATTTAG-TAAC-TCGAACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATAT-GCTAACTTAGAACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
69764113 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
69764175 GGATATGCTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATGCTAACTTAGAACAAAGCCTTCGGGACTTAACCCGGA
69764218 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
118 5 0.06
119 64 0.71
120 21 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATGCTAACTTAGAACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69771837 original size:40 final size:40
Alignment explanation
Indices: 69771800--69772024 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
69771790 GCTACTCGTT
* *
69771800 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
69771840 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
69771880 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
69771920 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
69771959 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
69772000 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
69772025 CATCATTCAA
Statistics
Matches: 164, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 32 0.20
40 117 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69771984 original size:119 final size:120
Alignment explanation
Indices: 69771800--69772024 Score: 287
Period size: 119 Copynumber: 1.9 Consensus size: 120
69771790 GCTACTCGTT
* *
69771800 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
69771865 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * **
69771920 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTTGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
69771982 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
69772025 CATCATTCAA
Statistics
Matches: 90, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
118 4 0.04
119 64 0.71
120 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69778032 original size:40 final size:40
Alignment explanation
Indices: 69777988--69778212 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
69777978 GCTCCTCGTT
* * *
69777988 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
69778028 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
69778068 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
69778108 CAAACGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
69778148 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
69778189 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
69778213 CAGCATTCAA
Statistics
Matches: 170, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
39 19 0.11
40 142 0.84
41 9 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69785030 original size:6 final size:6
Alignment explanation
Indices: 69784997--69785050 Score: 56
Period size: 6 Copynumber: 9.2 Consensus size: 6
69784987 TGAATCCTCC
* * * * *
69784997 TATTTT T-TATT TATTCT TATTCT TATTTT TATTTT TCTTTT GATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
69785044 TATTTT T
1 TATTTT T
69785051 GTTTCAGTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
5 4 0.10
6 35 0.90
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:69785061 original size:18 final size:18
Alignment explanation
Indices: 69785021--69785069 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
69785011 TCTTATTCTT
*
69785021 ATTTTTATTTTTCTTTTG
1 ATTTTTATTTTTCTTTAG
*
69785039 ATTTTTATTTTTGTTTCAG
1 ATTTTTATTTTTCTTT-AG
*
69785058 TTTTATTATTTT
1 ATTT-TTATTTT
69785070 ATTTTCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 15 0.58
19 4 0.15
20 7 0.27
ACGTcount: A:0.14, C:0.04, G:0.06, T:0.76
Consensus pattern (18 bp):
ATTTTTATTTTTCTTTAG
Found at i:69792229 original size:40 final size:40
Alignment explanation
Indices: 69792174--69792396 Score: 270
Period size: 40 Copynumber: 5.5 Consensus size: 40
69792164 TATTCGGATG
69792174 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
69792214 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* ** *
69792257 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGGTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
69792297 ATATCCGAGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
69792337 ATATCCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
69792376 ATATCC-GGCTAAATCCTGAAG
1 ATATCCGGGCTAAGTCCCGAAG
69792397 ATACTTGGGT
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 6 0.04
39 30 0.19
40 85 0.54
41 1 0.01
43 36 0.23
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:69792317 original size:83 final size:78
Alignment explanation
Indices: 69792178--69792396 Score: 255
Period size: 83 Copynumber: 2.7 Consensus size: 78
69792168 CGGATGATAT
* * **
69792178 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-GAGTGACTATATCC-GGCTAAGTCCCGAAGGCATTCA
69792243 TGCGAGTAGTTG-CTATAC
64 TGC---TAG-TGACTATAC
69792261 CCGGGCTAAGTCCCGAAGGCATTTGTGGTAGTGACTATATCCGAGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGG-AGTGACTATATCCG-GCTAAGTCCCGAAGGCATTCA
*
69792326 TGCTAGTGACTATAT
64 TGCTAGTGACTATAC
* * *
69792341 CCGGGCTAAG-ACCGAAGGCATTTGTGCGAGTTG-CTATATCCGGCTAAATCCTGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTG-GAG-TGACTATATCCGGCTAAGTCCCGAAG
69792397 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 8, Indels: 15
0.84 0.05 0.10
Matches are distributed among these distances:
78 12 0.10
79 28 0.23
80 21 0.17
82 1 0.01
83 61 0.50
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGGAGTGACTATATCCGGCTAAGTCCCGAAGGCATTCATG
CTAGTGACTATAC
Found at i:69795699 original size:26 final size:25
Alignment explanation
Indices: 69795635--69795704 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 25
69795625 CAATCTGACC
* *
69795635 CATAGCTTGTGTGAGCAGGCCCATTT
1 CATAGC-TGTGTGAGCAAGACCATTT
* *
69795661 CACAACTGATGTGAGCAAGACCATTT
1 CATAGCTG-TGTGAGCAAGACCATTT
69795687 CATAGCTCGTGTGAGCAA
1 CATAGCT-GTGTGAGCAA
69795705 ACATGTATCT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.06
26 33 0.92
27 1 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
CATAGCTGTGTGAGCAAGACCATTT
Found at i:69801734 original size:20 final size:21
Alignment explanation
Indices: 69801695--69801734 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
69801685 GTACTTCGGA
* *
69801695 AAAAGAGGGCCTCGATGGGCC
1 AAAACAGGGCCTCAATGGGCC
69801716 AAAACAGGGCCT-AATGGGC
1 AAAACAGGGCCTCAATGGGC
69801735 TTACGGACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.33, C:0.23, G:0.35, T:0.10
Consensus pattern (21 bp):
AAAACAGGGCCTCAATGGGCC
Found at i:69808485 original size:49 final size:49
Alignment explanation
Indices: 69808428--69808672 Score: 283
Period size: 49 Copynumber: 4.9 Consensus size: 49
69808418 TAGACAAGGT
* * * * *
69808428 TATCTGGTACGCATAGTAGCCTGTACTTAGTACTAGACATGCGACCAAG
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAG
* *
69808477 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AAG
* * * * *
69808527 CATCTGATACACGTAGTAACCTGCACTTAGTACTACACACGTGATCGAAG
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAAG
* * * * *
69808577 TTGTCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 -TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAG
* * *
69808627 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTATACACGTGACC
1 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
69808673 TCACAATAGA
Statistics
Matches: 164, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 79 0.48
50 48 0.29
51 37 0.23
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAAG
Found at i:69808567 original size:28 final size:28
Alignment explanation
Indices: 69808485--69808568 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
69808475 AGTATCTGGT
*
69808485 ACACGTAGTAGCCTGCACTTAGTACTAC
1 ACACGTAGTAACCTGCACTTAGTACTAC
* * *
69808513 ACACGT-G--ACCT-AAC-CA-T-CTGAT
1 ACACGTAGTAACCTGCACTTAGTACT-AC
69808535 ACACGTAGTAACCTGCACTTAGTACTAC
1 ACACGTAGTAACCTGCACTTAGTACTAC
69808563 ACACGT
1 ACACGT
69808569 GATCGAAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 16
0.64 0.11 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 2 0.05
25 7 0.17
26 2 0.05
27 2 0.05
28 14 0.34
29 2 0.05
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (28 bp):
ACACGTAGTAACCTGCACTTAGTACTAC
Found at i:69808603 original size:101 final size:100
Alignment explanation
Indices: 69808479--69808670 Score: 285
Period size: 100 Copynumber: 1.9 Consensus size: 100
69808469 CGACCAAGTA
* * *
69808479 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGT
69808544 AACCTGCACTTAGTACTACACACGTGATCGAAGTTG
65 AACCTGCACTTAGTACTACACACGTGATCGAAGTTG
* * ** *
69808580 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTA
* *
69808645 GCCTGCACTTAGTACTATACACGTGA
66 ACCTGCACTTAGTACTACACACGTGA
69808671 CCTCACAATA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
100 41 0.51
101 40 0.49
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (100 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTA
ACCTGCACTTAGTACTACACACGTGATCGAAGTTG
Found at i:69814432 original size:49 final size:49
Alignment explanation
Indices: 69814373--69814618 Score: 312
Period size: 49 Copynumber: 5.0 Consensus size: 49
69814363 GTAGACAAGG
* * **
69814373 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGTGACCAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
* * *
69814422 TTATCCGGTACACGTAGTAGCCTGTACTTAGTACTACACACGTGCCCTAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AA
** *
69814472 CCATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACGAA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTG-ACCAA
* *** ***
69814522 GTTATCGGGTACGTATAGTAGCCTGCACTTAGTACTACACATACGACCAA
1 -TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
69814572 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
69814619 TCACAATAGA
Statistics
Matches: 164, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
49 80 0.49
50 48 0.29
51 36 0.22
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (49 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAA
Found at i:69814615 original size:100 final size:100
Alignment explanation
Indices: 69814373--69814616 Score: 321
Period size: 100 Copynumber: 2.5 Consensus size: 100
69814363 GTAGACAAGG
* * ** *
69814373 TTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACGTGTG-ACCAATTATCCGGTACACGT
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACCAATTATCCGGTACACAT
* ** *
69814437 AGTAGCCTGTACTTAGTACTACACACGTGCCCTAA
66 AGTAGCCTGCACTTAGTACTACACACACGACCTAA
** * * **
69814472 CCATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACGAAGTTATCGGGTACGTA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACCAA-TTATCCGGTACACA
*
69814537 TAGTAGCCTGCACTTAGTACTACACATACGACC-AA
65 TAGTAGCCTGCACTTAGTACTACACACACGACCTAA
69814572 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
1 TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA
69814617 CCTCACAATA
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
99 38 0.30
100 49 0.39
101 38 0.30
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.27
Consensus pattern (100 bp):
TTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAACCAATTATCCGGTACACAT
AGTAGCCTGCACTTAGTACTACACACACGACCTAA
Found at i:69814895 original size:27 final size:28
Alignment explanation
Indices: 69814865--69814921 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
69814855 TCATACAACC
*
69814865 CATGTAATAATAATTTAACATTC-ATTT
1 CATGTAACAATAATTTAACATTCAATTT
**
69814892 CATGTAACAATAATTTGCCATTCAATTT
1 CATGTAACAATAATTTAACATTCAATTT
69814920 CA
1 CA
69814922 CATGACACAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.39, C:0.16, G:0.05, T:0.40
Consensus pattern (28 bp):
CATGTAACAATAATTTAACATTCAATTT
Done.