Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 219 of 295
Found at i:69816271 original size:24 final size:25
Alignment explanation
Indices: 69816236--69816290 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 25
69816226 TAAGCTCATT
*
69816236 GAGCT-AGAAACAATAAGCTCTGAC
1 GAGCTGAGAAACAATAAACTCTGAC
* *
69816260 GAGCTGAG-AACAGTAAACTCTTAC
1 GAGCTGAGAAACAATAAACTCTGAC
*
69816284 AAGCTGA
1 GAGCTGA
69816291 TTTATATCGA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.40, C:0.20, G:0.22, T:0.18
Consensus pattern (25 bp):
GAGCTGAGAAACAATAAACTCTGAC
Found at i:69821946 original size:99 final size:99
Alignment explanation
Indices: 69821789--69822112 Score: 488
Period size: 99 Copynumber: 3.3 Consensus size: 99
69821779 CTGGTATGCC
* * * * * ** *
69821789 TAGTAGCCTACACATAGTACTATACATGCGACC-AATTATCCGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
69821853 AGTACTACACACGTGGCCAATTATCCGGTACACG
66 AGTACTACACACGTGGCCAATTATCCGGTACACG
69821887 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
69821952 AGTACTACACACGTGGCCAATTATCCGGTACACG
66 AGTACTACACACGTGGCCAATTATCCGGTACACG
69821986 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
* * * ** * *
69822051 AGTACTACACACGTGATCACAGTTTTTGGGTACGCA
66 AGTACTACACACGTG-GC-CAATTATCCGGTACACG
69822087 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
69822113 TGCGACCTCA
Statistics
Matches: 208, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
98 28 0.13
99 142 0.68
100 1 0.00
101 37 0.18
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGGCCAATTATCCGGTACACG
Found at i:69821956 original size:50 final size:49
Alignment explanation
Indices: 69821789--69822112 Score: 414
Period size: 49 Copynumber: 6.5 Consensus size: 49
69821779 CTGGTATGCC
* * * * *
69821789 TAGTAGCCTACACATAGTACTATACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
* *
69821838 TAGTAGCCTGCACTTAGTACTACACACGTGGCCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
** *
69821887 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACACG
* *
69821937 TAGTAGCCTGCACTTAGTACTACACACGTGGCCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
** *
69821986 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGATACACG
* * ** * * *
69822036 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTTGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGATACACG
69822087 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
69822113 TGCGACCTCA
Statistics
Matches: 240, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
49 118 0.49
50 87 0.36
51 34 0.14
52 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGATACACG
Found at i:69826404 original size:22 final size:22
Alignment explanation
Indices: 69826376--69826420 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
69826366 CCTTAATAGG
* *
69826376 CGAGGAAACATCCCGTTTGAAC
1 CGAGGAAAAATCCCATTTGAAC
69826398 CGAGGAAAAATCCCATTTGAAC
1 CGAGGAAAAATCCCATTTGAAC
69826420 C
1 C
69826421 TTAGGAATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.27, G:0.20, T:0.18
Consensus pattern (22 bp):
CGAGGAAAAATCCCATTTGAAC
Found at i:69830199 original size:20 final size:20
Alignment explanation
Indices: 69830176--69830214 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
69830166 TAAACATGGT
69830176 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
69830196 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
69830215 TGTAATCACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:69830367 original size:24 final size:23
Alignment explanation
Indices: 69830266--69830367 Score: 168
Period size: 23 Copynumber: 4.3 Consensus size: 23
69830256 AGGAAGTGTA
69830266 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
69830289 AAAGGGCTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
69830312 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
69830335 AACAGGGCTTTTGCCCCAGTTATT
1 AA-AGGGCTTATGCCCCAGTTATT
69830359 AAAGAGGCT
1 AAAG-GGCT
69830368 AGGCCTCGAG
Statistics
Matches: 74, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 48 0.65
24 26 0.35
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:69830617 original size:31 final size:31
Alignment explanation
Indices: 69830579--69830638 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
69830569 TACAGTAAAG
69830579 GCTTCGGCCCAGTAATATGAAATATGAAAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAAAA
**
69830610 GCTTCGGCCCAGTGTTATGAAATATGAAA
1 GCTTCGGCCCAGTAATATGAAATATGAAA
69830639 TATGAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.25
Consensus pattern (31 bp):
GCTTCGGCCCAGTAATATGAAATATGAAAAA
Found at i:69850221 original size:22 final size:22
Alignment explanation
Indices: 69850167--69850247 Score: 67
Period size: 23 Copynumber: 3.6 Consensus size: 22
69850157 CCTGAGTTGA
* **
69850167 TGAACAGTAAGCTCTATTAAGC
1 TGAACAGTAAGCTTTATCGAGC
69850189 TTGAA-AGGTAAGCTTTATCGAGC
1 -TGAACA-GTAAGCTTTATCGAGC
*
69850212 TGAACAGTAAGC-TCATACGAGC
1 TGAACAGTAAGCTTTAT-CGAGC
*
69850234 TAAAACAGTAAGCT
1 T-GAACAGTAAGCT
69850248 CCAATGAGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
21 3 0.06
22 17 0.35
23 28 0.58
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (22 bp):
TGAACAGTAAGCTTTATCGAGC
Found at i:69850244 original size:23 final size:23
Alignment explanation
Indices: 69850214--69850278 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
69850204 TATCGAGCTG
69850214 AACAGTAAGCTCATACGAGCTAA
1 AACAGTAAGCTCATACGAGCTAA
* *
69850237 AACAGTAAGCTCCA-ATGAGCTGA
1 AACAGTAAGCT-CATACGAGCTAA
* *
69850260 AATAGTAAGCTCTTACGAG
1 AACAGTAAGCTCATACGAG
69850279 TTGATATATC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 1 0.03
23 32 0.91
24 2 0.06
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (23 bp):
AACAGTAAGCTCATACGAGCTAA
Found at i:69859172 original size:21 final size:21
Alignment explanation
Indices: 69859148--69859208 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
69859138 TAAAATGAGT
69859148 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
69859169 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
69859190 ACACCAT-GCCATATCATGT
1 ATATCATAG-CATATCATGT
69859209 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:69859273 original size:25 final size:25
Alignment explanation
Indices: 69859245--69859294 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
69859235 ATAATCAAAC
* *
69859245 CCTAGGGGTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
69859270 CCTAGGGGCAAAATAGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
69859295 TATTATAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:69866545 original size:24 final size:24
Alignment explanation
Indices: 69866504--69866550 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
69866494 GCTTTATCAT
**
69866504 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCAAAGCC-CTTTTA
69866529 ATAACT-GAGGCAAAGCCCTTTT
1 ATAACTGGAGGCAAAGCCCTTTT
69866551 CGCACTTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 9 0.45
25 6 0.30
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
ATAACTGGAGGCAAAGCCCTTTTA
Found at i:69866622 original size:11 final size:11
Alignment explanation
Indices: 69866606--69866658 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
69866596 GTATATCATA
69866606 GCATATCATGT
1 GCATATCATGT
*
69866617 GCATATCAT-A
1 GCATATCATGT
*
69866627 ACATATCATGT
1 GCATATCATGT
*
69866638 GCATACCATG-
1 GCATATCATGT
*
69866648 CCATATCATGT
1 GCATATCATGT
69866659 ATAAAAATAT
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (11 bp):
GCATATCATGT
Found at i:69866622 original size:21 final size:21
Alignment explanation
Indices: 69866598--69866658 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
69866588 TAAAATGAGT
69866598 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
69866619 ATATCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
*
69866640 ATACCAT-GCCATATCATGT
1 ATATCATAG-CATATCATGT
69866659 ATAAAAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.33
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:69866732 original size:25 final size:25
Alignment explanation
Indices: 69866695--69866743 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
69866685 ATAATCAAAC
** *
69866695 CCTAGGGTTAAAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
*
69866720 CCTAGGGGCAAAATAGTTATTTTT
1 CCTAGGGGCAAAATAGTCATTTTT
69866744 CATATTATAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:69877803 original size:8 final size:8
Alignment explanation
Indices: 69877792--69877826 Score: 70
Period size: 8 Copynumber: 4.4 Consensus size: 8
69877782 ACAATTCTGA
69877792 ACATTCAC
1 ACATTCAC
69877800 ACATTCAC
1 ACATTCAC
69877808 ACATTCAC
1 ACATTCAC
69877816 ACATTCAC
1 ACATTCAC
69877824 ACA
1 ACA
69877827 AGTCAAATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.40, C:0.37, G:0.00, T:0.23
Consensus pattern (8 bp):
ACATTCAC
Found at i:69878293 original size:12 final size:13
Alignment explanation
Indices: 69878276--69878304 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
69878266 ACCAATTCAG
69878276 ACATTTTTACTT-
1 ACATTTTTACTTC
69878288 ACATTTTTACTTC
1 ACATTTTTACTTC
69878301 ACAT
1 ACAT
69878305 AAAACTCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.28, C:0.21, G:0.00, T:0.52
Consensus pattern (13 bp):
ACATTTTTACTTC
Found at i:69881406 original size:13 final size:13
Alignment explanation
Indices: 69881388--69881413 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
69881378 GGAGTCTAAG
69881388 AATATAAATTTTA
1 AATATAAATTTTA
69881401 AATATAAATTTTA
1 AATATAAATTTTA
69881414 TCTTATAATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AATATAAATTTTA
Found at i:69882243 original size:39 final size:39
Alignment explanation
Indices: 69882189--69882464 Score: 444
Period size: 39 Copynumber: 7.1 Consensus size: 39
69882179 ATTATATTAT
* * *
69882189 CAGCACAAAGCCTGCGGGACTTTAACCTGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
69882228 CAGCAAGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
69882267 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
69882306 CAGCACGAAGCCTGCGGGACTTTGGCACGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
69882345 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
69882384 CAGCACGAAGCCTGTGGGACTTTGGCCCGGATATATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
69882423 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
69882462 CAG
1 CAG
69882465 TGTCTTGCAT
Statistics
Matches: 217, Mismatches: 20, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 217 1.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:69889424 original size:40 final size:40
Alignment explanation
Indices: 69889394--69889618 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
69889384 GCTACTCGTT
* *
69889394 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
69889434 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
69889474 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
69889514 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
69889553 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
69889594 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
69889619 CATCATTCGA
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 119 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69889578 original size:119 final size:120
Alignment explanation
Indices: 69889394--69889618 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
69889384 GCTACTCGTT
*
69889394 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
69889459 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
69889514 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
69889576 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
69889619 CATCATTCGA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:69922010 original size:29 final size:28
Alignment explanation
Indices: 69921974--69922051 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
69921964 TCATGAGATT
69921974 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
69922004 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
69922031 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
69922052 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:69922269 original size:174 final size:174
Alignment explanation
Indices: 69922004--69922331 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
69921994 AAATTGTACA
69922004 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
69922069 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTCACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTCACCGAGTCAA
69922134 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
69922178 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
69922243 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTCACCGAGTCAA
69922308 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
69922332 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTCACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:69927429 original size:15 final size:15
Alignment explanation
Indices: 69927409--69927465 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
69927399 CGATGAATTT
69927409 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
69927424 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
69927439 ATTGAATTTATATTG
1 ATTGAATTTATATTG
69927454 ATTGAA-TTATAT
1 ATTGAATTTATAT
69927466 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:69927877 original size:23 final size:21
Alignment explanation
Indices: 69927851--69927898 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
69927841 GCACTTTATG
69927851 TGTCATATTTCAGGCACCTCGTA
1 TGTCATA--TCAGGCACCTCGTA
* *
69927874 TGTCGTATCAGGCACCTCGTG
1 TGTCATATCAGGCACCTCGTA
69927895 TGTC
1 TGTC
69927899 GTTTTAGGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.74
23 6 0.26
ACGTcount: A:0.17, C:0.27, G:0.23, T:0.33
Consensus pattern (21 bp):
TGTCATATCAGGCACCTCGTA
Found at i:69927886 original size:21 final size:21
Alignment explanation
Indices: 69927860--69927909 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
69927850 GTGTCATATT
69927860 TCAGGCACCTCGTATGTCGTA
1 TCAGGCACCTCGTATGTCGTA
* *
69927881 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTATGTCGTA
*
69927902 TTAGGCAC
1 TCAGGCAC
69927910 TTTATGTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.16, C:0.28, G:0.26, T:0.30
Consensus pattern (21 bp):
TCAGGCACCTCGTATGTCGTA
Found at i:69927917 original size:21 final size:21
Alignment explanation
Indices: 69927839--69927921 Score: 58
Period size: 21 Copynumber: 3.9 Consensus size: 21
69927829 TTTATCGATC
* * *
69927839 AGGCACTTTATGTGTCATATTT
1 AGGCACCTCATGTGTCGT-TTT
* * * *
69927861 CAGGCACCTCGTATGTCGTATC
1 -AGGCACCTCATGTGTCGTTTT
*
69927883 AGGCACCTCGTGTGTCGTTTT
1 AGGCACCTCATGTGTCGTTTT
* *
69927904 AGGCACTTTATGTGTCGT
1 AGGCACCTCATGTGTCGT
69927922 ATACTGATCA
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
21 33 0.70
22 1 0.02
23 13 0.28
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.37
Consensus pattern (21 bp):
AGGCACCTCATGTGTCGTTTT
Found at i:69929461 original size:16 final size:15
Alignment explanation
Indices: 69929440--69929469 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
69929430 GAATGGAGCA
69929440 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
69929456 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
69929470 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:69963795 original size:119 final size:120
Alignment explanation
Indices: 69963611--69963828 Score: 284
Period size: 119 Copynumber: 1.8 Consensus size: 120
69963601 GCTACTCGTT
* *
69963611 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTGACCCGG
* *
69963676 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
* * *
69963731 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTT-AGTC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTGA-CC
* *
69963792 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTA
69963829 GCCCGGACAT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
118 5 0.06
119 58 0.68
120 22 0.26
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTGACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
Found at i:69963835 original size:40 final size:40
Alignment explanation
Indices: 69963592--69963835 Score: 275
Period size: 40 Copynumber: 6.1 Consensus size: 40
69963582 CGGAATTTAA
** *
69963592 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69963632 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTT-GAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAG-C
* *
69963672 CCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69963712 CCAGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
69963751 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
69963791 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
69963831 CCGGA
1 CCGGA
69963836 CATCATTCAA
Statistics
Matches: 175, Mismatches: 20, Indels: 18
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.19
40 128 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:69969061 original size:29 final size:29
Alignment explanation
Indices: 69968998--69969065 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
69968988 TAATCAACCG
*
69968998 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
69969027 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
69969056 CGCACACTTA
1 CGCACACTTA
69969066 CCTTTTCCGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:69969235 original size:29 final size:29
Alignment explanation
Indices: 69969172--69969239 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
69969162 TAATCAACCG
69969172 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
69969201 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
69969230 CGCACACTTA
1 CGCACACTTA
69969240 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:69969380 original size:29 final size:30
Alignment explanation
Indices: 69969341--69969419 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
69969331 CTTAATAATC
69969341 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
69969371 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
69969400 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
69969420 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:69969413 original size:174 final size:174
Alignment explanation
Indices: 69968887--69969388 Score: 941
Period size: 174 Copynumber: 2.9 Consensus size: 174
69968877 AACTCAAGGT
* *
69968887 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
69968952 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
69969017 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
69969061 ACTTACCTTTTCCGTTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
69969126 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
69969191 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
69969235 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
69969300 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
69969365 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
69969389 TGTACAATTT
Statistics
Matches: 318, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 318 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:69971580 original size:230 final size:230
Alignment explanation
Indices: 69971177--69971630 Score: 793
Period size: 230 Copynumber: 2.0 Consensus size: 230
69971167 AAAGATGTAT
*
69971177 AATGATCTGAAACAACTTTACTGTTGGCATGGAATGAAGCGAGACATTTTTGACTTTGTTACAAA
1 AATGATCTGAAACAACTTTACTGTTGGCATGGAATGAAGCGAGACATTTCTGACTTTGTTACAAA
69971242 ATGTTTAGTCTGTCAACAAGTAAAAGCTAAACATCAGGTGCCTTCAGGATTACTTCAGCCTATCA
66 ATGTTTAGTCTGTCAACAAGTAAAAGCTAAACATCAGGTGCCTTCAGGATTACTTCAGCCTATCA
69971307 TGATACCTGAGTGGAAATGGGATAGAGTTACGATAGATTTTGTATCTGATTTACCATTGACACCG
131 TGATACCTGAGTGGAAATGGGATAGAGTTACGATAGATTTTGTATCTGATTTACCATTGACACCG
*
69971372 GGCAAGAAAGATGCAATGTGGATTGTTGTTGATAG
196 GGCAAGAAAGATGCAATCTGGATTGTTGTTGATAG
*
69971407 AATGATCTGAAACAACTTTACTAG-TGGCATGGTATGAAGCGAGACATTTCTGACTTTGTTACAA
1 AATGATCTGAAACAACTTTACT-GTTGGCATGGAATGAAGCGAGACATTTCTGACTTTGTTACAA
* * *
69971471 AATGTTTAGTCTGTCATCAAGTAAAAGCTGAACATCAGGTGCCTTCAGGATTACTTCAGCCTGTC
65 AATGTTTAGTCTGTCAACAAGTAAAAGCTAAACATCAGGTGCCTTCAGGATTACTTCAGCCTATC
* * *
69971536 ATGATACCTGAGTGGAAATGGGATAGAGTTACGATGGATTTTGTATCTGGTTTACCATTTACACC
130 ATGATACCTGAGTGGAAATGGGATAGAGTTACGATAGATTTTGTATCTGATTTACCATTGACACC
* *
69971601 GGGCAAGAAATATGCAATCTGGGTTGTTGT
195 GGGCAAGAAAGATGCAATCTGGATTGTTGT
69971631 CAATAGATTG
Statistics
Matches: 212, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
230 211 1.00
231 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (230 bp):
AATGATCTGAAACAACTTTACTGTTGGCATGGAATGAAGCGAGACATTTCTGACTTTGTTACAAA
ATGTTTAGTCTGTCAACAAGTAAAAGCTAAACATCAGGTGCCTTCAGGATTACTTCAGCCTATCA
TGATACCTGAGTGGAAATGGGATAGAGTTACGATAGATTTTGTATCTGATTTACCATTGACACCG
GGCAAGAAAGATGCAATCTGGATTGTTGTTGATAG
Found at i:69974460 original size:17 final size:19
Alignment explanation
Indices: 69974435--69974471 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
69974425 CGGTTAGGTG
*
69974435 ATATTTATA-ATA-AATAT
1 ATATGTATATATACAATAT
69974452 ATATGTATATATACAATAT
1 ATATGTATATATACAATAT
69974471 A
1 A
69974472 AATTTATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 3 0.18
19 6 0.35
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (19 bp):
ATATGTATATATACAATAT
Found at i:69974479 original size:19 final size:18
Alignment explanation
Indices: 69974437--69974480 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
69974427 GTTAGGTGAT
*
69974437 ATTTATA-ATAAATATAT
1 ATTTATATATAAATATAA
*
69974454 ATGTATATATACAATATAA
1 ATTTATATATA-AATATAA
69974473 ATTTATAT
1 ATTTATAT
69974481 GCATTTGAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 6 0.27
18 3 0.14
19 13 0.59
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTTATATATAAATATAA
Found at i:69982510 original size:46 final size:46
Alignment explanation
Indices: 69982441--69982566 Score: 173
Period size: 46 Copynumber: 2.7 Consensus size: 46
69982431 CATTGGGTGG
* * *
69982441 TATGTGAGACAGTGTAAGACATGTCTAGGACATGCATCGGCCA-CAT
1 TATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGG-CATCAA
*
69982487 TATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATTAA
1 TATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATCAA
* * *
69982533 GATGAGAGCTAGTGTAAGACATGTCTGGGACATG
1 TATGAGAGCCAGTGTAAGACATGTCTAGGACATG
69982567 AATCACCATC
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
45 2 0.03
46 70 0.97
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (46 bp):
TATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCATCAA
Found at i:69982739 original size:49 final size:49
Alignment explanation
Indices: 69982634--69982813 Score: 161
Period size: 49 Copynumber: 3.7 Consensus size: 49
69982624 TGTTGTGTGT
* * *
69982634 CAGTGTAAGACCTATCTGGGACATGGCATCGACACTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGACGAAAGC
* **
69982683 CAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTCGATATACGAAATT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGACGAAAGC
* * * * * ** * *
69982732 CATTGTAAGACCTGTCTAGGCCACGGCATTGACTTTAAT-GTAC--TAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAG-ACGAAAGC
*
69982779 CAGTGTAAGACCATGTCTAGGACATGGCATCGACA
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGACA
69982814 TCTTATCCCA
Statistics
Matches: 105, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
47 12 0.11
48 20 0.19
49 72 0.69
50 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGACGAAAGC
Found at i:70002031 original size:22 final size:20
Alignment explanation
Indices: 70002003--70002047 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
70001993 GATTTATGAG
*
70002003 AATGAATGCTTTATGCTTGATA
1 AATGAATGCTATATG-TTG-TA
70002025 AATGAATGCTATATGTTGTA
1 AATGAATGCTATATGTTGTA
70002045 AAT
1 AAT
70002048 TGATCGGTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 3 0.14
22 14 0.64
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.40
Consensus pattern (20 bp):
AATGAATGCTATATGTTGTA
Found at i:70002683 original size:19 final size:18
Alignment explanation
Indices: 70002646--70002684 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
70002636 ATGCCTCAAT
*
70002646 TTTTGAAAGTGTTGATGA
1 TTTTGAAAGTGTTCATGA
*
70002664 TTTTGAAAGTTTTCATTGA
1 TTTTGAAAGTGTTCA-TGA
70002683 TT
1 TT
70002685 AATTCATGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.51
Consensus pattern (18 bp):
TTTTGAAAGTGTTCATGA
Found at i:70003372 original size:43 final size:43
Alignment explanation
Indices: 70003307--70003518 Score: 270
Period size: 43 Copynumber: 5.0 Consensus size: 43
70003297 GTTACCGAAA
*
70003307 TGTGATTACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
1 TGTGAATACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
*
70003350 TGTGAATACATGTAAGATCATGTCTGGGATATTGGCATTGTAT
1 TGTGAATACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
* *
70003393 TGTGGATACATGTAAGACCATGTCTGGGACATTGGCATTGTTAT
1 TGTGAATACATGTAAGACCATGTCTGGGATATTGGCATTG-TAT
* * * * * *
70003437 T-TGATTTCGTGTAAGACCATGTCTGGGATAGTGGCGTCG-AT
1 TGTGAATACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
*
70003478 ATGTG-ATAACATGTAAGACCATATCTGGGATA-TGGCATTGT
1 -TGTGAAT-ACATGTAAGACCATGTCTGGGATATTGGCATTGT
70003519 TCGAGCTTAT
Statistics
Matches: 145, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
41 2 0.01
42 8 0.06
43 131 0.90
44 4 0.03
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.35
Consensus pattern (43 bp):
TGTGAATACATGTAAGACCATGTCTGGGATATTGGCATTGTAT
Found at i:70007422 original size:26 final size:27
Alignment explanation
Indices: 70007393--70007451 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
70007383 CAAGATGAAG
70007393 TAAAAA-TAAAATTTAAAAAAAT-AAAA
1 TAAAAAGT-AAATTTAAAAAAATAAAAA
** *
70007419 TAAAAAGTAGTTTTAAAAAGATAAAAA
1 TAAAAAGTAAATTTAAAAAAATAAAAA
70007446 TAAAAA
1 TAAAAA
70007452 CATAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 17 0.61
27 11 0.39
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (27 bp):
TAAAAAGTAAATTTAAAAAAATAAAAA
Found at i:70007449 original size:14 final size:14
Alignment explanation
Indices: 70007432--70007461 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70007422 AAAGTAGTTT
*
70007432 TAAAAAGATAAAAA
1 TAAAAACATAAAAA
70007446 TAAAAACATAAAAA
1 TAAAAACATAAAAA
70007460 TA
1 TA
70007462 CTAAATAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.17
Consensus pattern (14 bp):
TAAAAACATAAAAA
Found at i:70009103 original size:19 final size:18
Alignment explanation
Indices: 70009079--70009117 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
70009069 TGAGGTGCGC
70009079 AAGGGAGAGAAGAGGGGAG
1 AAGGGAGAG-AGAGGGGAG
*
70009098 AAGGGAGAGAGAGGTGAG
1 AAGGGAGAGAGAGGGGAG
70009116 AA
1 AA
70009118 AAATGAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.44, C:0.00, G:0.54, T:0.03
Consensus pattern (18 bp):
AAGGGAGAGAGAGGGGAG
Found at i:70016759 original size:28 final size:28
Alignment explanation
Indices: 70016719--70016777 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
70016709 CCATGAACCA
70016719 TATCATAAGATTATATACACAAAATGAG
1 TATCATAAGATTATATACACAAAATGAG
70016747 TATCATAAGATTATATACACAAAATGAG
1 TATCATAAGATTATATACACAAAATGAG
70016775 TAT
1 TAT
70016778 AATGCTATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (28 bp):
TATCATAAGATTATATACACAAAATGAG
Found at i:70019631 original size:35 final size:36
Alignment explanation
Indices: 70019585--70019660 Score: 136
Period size: 35 Copynumber: 2.1 Consensus size: 36
70019575 CAAAACCGCG
70019585 AGGTAAACCTCAGATCTCTATCT-AATGATCGACAA
1 AGGTAAACCTCAGATCTCTATCTAAATGATCGACAA
70019620 AGGTAAACCTCAGATCTCTATCTGAAATGATCGACAA
1 AGGTAAACCTCAGATCTCTATCT-AAATGATCGACAA
70019657 AGGT
1 AGGT
70019661 GCTCTATGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 23 0.59
37 16 0.41
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (36 bp):
AGGTAAACCTCAGATCTCTATCTAAATGATCGACAA
Found at i:70021815 original size:29 final size:29
Alignment explanation
Indices: 70021752--70021819 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70021742 TAATCAACCG
*
70021752 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70021781 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70021810 CGCACACTTA
1 CGCACACTTA
70021820 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70021931 original size:174 final size:174
Alignment explanation
Indices: 70021641--70022782 Score: 2178
Period size: 174 Copynumber: 6.6 Consensus size: 174
70021631 AACTCAAGGT
* *
70021641 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
70021706 GAAAATATATATTGAGTTCGCACACATGGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70021771 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70021815 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
70021880 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
70021945 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCACAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70021989 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70022054 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCACACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70022119 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70022163 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70022228 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAAT-AACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70022292 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70022336 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70022401 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACACTTAGTGCCAT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCG--CACACTTAGTGCCAT
70022466 GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
129 GTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70022512 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70022577 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70022642 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70022686 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70022751 GAAAATATATATTGGGTTCGCACACTTAGTGC
66 GAAAATATATATTGGGTTCGCACACATAGTGC
70022783 CATGTACTTC
Statistics
Matches: 952, Mismatches: 13, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
173 172 0.18
174 606 0.64
176 174 0.18
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:70021962 original size:29 final size:29
Alignment explanation
Indices: 70021928--70021993 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
70021918 ATCAACCGCG
70021928 CACACTTAGTGCCATGCACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACTCA
**
70021957 CACACTTAGTGCCATGCATTTCAAGTTCA
1 CACACTTAGTGCCATGCATTTCAAACTCA
70021986 CACACTTA
1 CACACTTA
70021994 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.30, C:0.30, G:0.11, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACTCA
Found at i:70022336 original size:29 final size:29
Alignment explanation
Indices: 70022273--70022340 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70022263 ATAATAACCG
*
70022273 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70022302 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70022331 CGCACACTTA
1 CGCACACTTA
70022341 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70022638 original size:523 final size:522
Alignment explanation
Indices: 70021641--70022782 Score: 2178
Period size: 523 Copynumber: 2.2 Consensus size: 522
70021631 AACTCAAGGT
* *
70021641 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
70021706 GAAAATATATATTGAGTTCGCACACATGGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70021771 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
70021836 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGC
196 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGC
70021901 ACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAG
261 ACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAG
70021966 TGCCATGCATTTCAAGTTCACACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGC
326 TGCCATGCATTTCAAGTTCACACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGC
70022031 ACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCA
391 ACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCA
70022096 ACCGCACACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGC
456 ACCGCACACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGC
70022161 AC
521 AC
70022163 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70022228 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAAT-AACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70022292 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
70022357 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGC
196 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGC
* *
70022422 ACACATAGTGCTTAATAATCAACCGCGCACACACTTAGTGCCATGTACTTTAAACTCACACACTT
261 ACACATAGTGCTCAATAATCAACCGCG--CACACTTAGTGCCATGCACTTTAAACTCACACACTT
*
70022487 AGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTC
324 AGTGCCATGCATTTCAAGTTCACACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTC
70022552 GCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAAT
389 GCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAAT
*
70022617 CAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTC
454 CAACCGCACACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTC
70022682 GCAC
519 GCAC
70022686 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70022751 GAAAATATATATTGGGTTCGCACACTTAGTGC
66 GAAAATATATATTGGGTTCGCACACATAGTGC
70022783 CATGTACTTC
Statistics
Matches: 609, Mismatches: 9, Indels: 3
0.98 0.01 0.00
Matches are distributed among these distances:
521 180 0.30
522 101 0.17
523 328 0.54
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (522 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGC
ACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAG
TGCCATGCATTTCAAGTTCACACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGC
ACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCA
ACCGCACACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGC
AC
Found at i:70022686 original size:29 final size:29
Alignment explanation
Indices: 70022623--70022690 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70022613 TAATCAACCG
*
70022623 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70022652 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70022681 CGCACACTTA
1 CGCACACTTA
70022691 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70022810 original size:29 final size:30
Alignment explanation
Indices: 70022768--70022842 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 30
70022758 TATATTGGGT
70022768 TCGCACACTTAGTGCCATGTAC-TTCAAAC
1 TCGCACACTTAGTGCCATGTACATTCAAAC
* *
70022797 TCGCACAGTTAGTG-C-TGTACAATTTAAAC
1 TCGCACACTTAGTGCCATGTAC-ATTCAAAC
*
70022826 CCGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
70022843 ATCTCATGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
27 5 0.13
28 1 0.03
29 31 0.82
30 1 0.03
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (30 bp):
TCGCACACTTAGTGCCATGTACATTCAAAC
Found at i:70030126 original size:29 final size:29
Alignment explanation
Indices: 70030063--70030130 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70030053 TAATCAACCG
*
70030063 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70030092 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70030121 CGCACACTTA
1 CGCACACTTA
70030131 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70030242 original size:174 final size:174
Alignment explanation
Indices: 70029952--70030570 Score: 1175
Period size: 174 Copynumber: 3.6 Consensus size: 174
70029942 AACTCAAGGT
* *
70029952 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70030017 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70030082 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
70030126 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCCCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
70030191 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70030256 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70030300 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70030365 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
70030430 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70030474 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70030539 GAAAATATATATTGGGTTCGCACACTTAGTGC
66 GAAAATATATATTGGGTTCGCACACATAGTGC
70030571 CATGTACTCT
Statistics
Matches: 435, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 435 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:70030300 original size:29 final size:29
Alignment explanation
Indices: 70030237--70030304 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
70030227 TAATCAACCG
70030237 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70030266 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70030295 CGCACACTTA
1 CGCACACTTA
70030305 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70030474 original size:29 final size:29
Alignment explanation
Indices: 70030411--70030478 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70030401 TAATCAACCG
*
70030411 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70030440 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70030469 CGCACACTTA
1 CGCACACTTA
70030479 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70030620 original size:29 final size:29
Alignment explanation
Indices: 70030554--70030624 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
70030544 TATATATTGG
*
70030554 GTTCGCACACTTAGTGCCATGTACTCTAA
1 GTTCGCACACTTAGTGCCATGCACTCTAA
** * *
70030583 ACTCACACACTTAGTGCCATGCA-TTTCAA
1 GTTCGCACACTTAGTGCCATGCACTCT-AA
70030612 GTTCGCACACTTA
1 GTTCGCACACTTA
70030625 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
28 2 0.06
29 31 0.94
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.30
Consensus pattern (29 bp):
GTTCGCACACTTAGTGCCATGCACTCTAA
Found at i:70030645 original size:320 final size:319
Alignment explanation
Indices: 70030237--70031121 Score: 1326
Period size: 320 Copynumber: 2.7 Consensus size: 319
70030227 TAATCAACCG
* *
70030237 CGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030302 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
70030367 AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTAC
131 AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTAC
70030432 TTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAA
196 TTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAA
70030497 ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTT
261 ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG-AAATATATATTGGGTT
70030557 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030622 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
*
70030687 AAATATATATTGGGTTCGCACACATAGTGCATAATAATCAACCGCGCACACACTTAGTGCCATGT
131 AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCG--CACACTTAGTGCCATGT
70030752 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
194 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCA
70030817 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAATATATATTGGGTT
259 AAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAATATATATTGGGTT
* * * * * * *
70030878 CGCACACATAGTG-CTTAATAATC-AACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACA
1 CGCACACTTAGTGCCAT-GTACTCTAAACTCACACACTTAGTGCCATG---------------CA
*
70030941 CTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAA
50 -TT--T--CA---AGTT------CGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAA
70031006 GTCGCACCCTTAATGTAAATAATTTATAG-AAATATATATTGGGTTCGCACACATAGTGCTTAAT
101 GTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCACACATAGTGCTTAAT
* **
70031070 AATCAACCGCGCACACTTAGTGCCATGTACTTCAAACTCGTACACTTAGTGC
166 AATCAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGC
70031122 TGTACAATTT
Statistics
Matches: 518, Mismatches: 15, Indels: 38
0.91 0.03 0.07
Matches are distributed among these distances:
320 195 0.38
321 32 0.06
322 127 0.25
335 2 0.00
336 2 0.00
338 1 0.00
340 2 0.00
343 3 0.01
346 38 0.07
348 45 0.09
349 71 0.14
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (319 bp):
CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTAC
TTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAA
ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAATATATATTGGGTT
Found at i:70030675 original size:146 final size:146
Alignment explanation
Indices: 70030411--70030716 Score: 594
Period size: 146 Copynumber: 2.1 Consensus size: 146
70030401 TAATCAACCG
*
70030411 CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030476 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
70030541 AAATATATATTGGGTT
131 AAATATATATTGGGTT
70030557 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030622 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
70030687 AAATATATATTGGGTT
131 AAATATATATTGGGTT
*
70030703 CGCACACATAGTGC
1 CGCACACTTAGTGC
70030717 ATAATAATCA
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 158 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (146 bp):
CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
AAATATATATTGGGTT
Found at i:70030969 original size:29 final size:29
Alignment explanation
Indices: 70030906--70030973 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
70030896 TAATCAACCG
*
70030906 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70030935 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70030964 CGCACACTTA
1 CGCACACTTA
70030974 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70031016 original size:173 final size:173
Alignment explanation
Indices: 70030557--70031121 Score: 1058
Period size: 173 Copynumber: 3.2 Consensus size: 173
70030547 ATATTGGGTT
*
70030557 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030622 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG-
*
70030687 AAATATATATTGGGTTCGCACACATAGTGCATAATAATCAACCG
130 AAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCG
70030731 CGCACACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
1 CG--CACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
70030796 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
64 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70030861 GAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCG
129 GAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCG
70030906 CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030971 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
70031036 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCG
131 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCG
* **
70031079 CGCACACTTAGTGCCATGTACTTCAAACTCGTACACTTAGTGC
1 CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGC
70031122 TGTACAATTT
Statistics
Matches: 384, Mismatches: 5, Indels: 5
0.97 0.01 0.01
Matches are distributed among these distances:
173 211 0.55
174 2 0.01
175 45 0.12
176 126 0.33
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (173 bp):
CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCG
Found at i:70031041 original size:494 final size:494
Alignment explanation
Indices: 70030063--70031064 Score: 1920
Period size: 494 Copynumber: 2.0 Consensus size: 494
70030053 TAATCAACCG
*
70030063 CGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
70030128 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCCCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCCCACCCTTAATGTAAATAATTTATAGA
70030193 AAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCAC
131 AAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCAC
70030258 TTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAA
196 TTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAA
70030323 ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCAC
261 ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCAC
70030388 ACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTG
326 ACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTG
70030453 CCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCAC
391 CCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCAC
70030518 CCTTAATGTAAATAATTTATAGAAAATATATATTGGGTT
456 CCTTAATGTAAATAATTTATAGAAAATATATATTGGGTT
70030557 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
1 CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
*
70030622 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGA
66 TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCCCACCCTTAATGTAAATAATTTATAGA
70030687 AAATATATATTGGGTTCGCACACATAGTGCAT-AATAATCAACCGCGCACACACTTAGTGCCATG
131 AAATATATATTGGGTTCGCACACATAGTGC-TCAATAATCAACCGCG--CACACTTAGTGCCATG
*
70030751 TACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCC
193 CACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCC
70030816 AAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG-AAATATATATTGGGTTCG
258 AAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCG
70030880 CACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTA
323 CACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTA
70030945 GTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCG
388 GTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCG
70031010 CACCCTTAATGTAAATAATTTATAG-AAATATATATTGGGTT
453 CACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTT
*
70031051 CGCACACATAGTGC
1 CGCACACTTAGTGC
70031065 TTAATAATCA
Statistics
Matches: 501, Mismatches: 4, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
494 201 0.40
495 174 0.35
496 126 0.25
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (494 bp):
CGCACACTTAGTGCCATGTACTCTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACAC
TTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCCCACCCTTAATGTAAATAATTTATAGA
AAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCAC
TTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAA
ATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAAAATATATATTGGGTTCGCAC
ACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTG
CCATGCATTTCAAGTTCGCACACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCAC
CCTTAATGTAAATAATTTATAGAAAATATATATTGGGTT
Found at i:70031114 original size:29 final size:30
Alignment explanation
Indices: 70031074--70031152 Score: 92
Period size: 29 Copynumber: 2.7 Consensus size: 30
70031064 CTTAATAATC
70031074 AACCGCGCACACTTAGTGCCATGTAC-TTCA
1 AACC-CGCACACTTAGTGCCATGTACATTCA
* * *
70031104 AACTCGTACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTCA
70031133 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70031153 ATCTCATGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.03
29 30 0.75
30 4 0.10
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTCA
Found at i:70036355 original size:24 final size:24
Alignment explanation
Indices: 70036187--70036355 Score: 232
Period size: 24 Copynumber: 7.0 Consensus size: 24
70036177 GCTTTATCGT
* *
70036187 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * * *
70036212 ATAAGTGGGGCAAAAACCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
70036236 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
70036260 ATAACTGGGGCGTAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
70036284 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
70036308 ATAGCTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
70036332 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
70036356 CACTTCCTCC
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 119 0.92
25 10 0.08
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:70050284 original size:47 final size:47
Alignment explanation
Indices: 70050206--70050797 Score: 950
Period size: 47 Copynumber: 12.6 Consensus size: 47
70050196 CCCTTCGGGA
* * * * * *
70050206 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050253 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050300 CTGATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70050347 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050394 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050443 CTTATCACATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70050490 CTTATCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050537 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70050584 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050631 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70050678 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70050725 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70050772 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
70050798 CACAATTATC
Statistics
Matches: 505, Mismatches: 38, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 461 0.91
49 44 0.09
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70056418 original size:43 final size:43
Alignment explanation
Indices: 70056366--70056536 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
70056356 CATAGGATCT
* *
70056366 GATATGTGATTTCGTGTAAGACCACATCTAGGATGTTGGCATC
1 GATATGTGATTTCGTGTAAGACCACGTCTAGGACGTTGGCATC
* * * *
70056409 GAGT-TGTGATTTATGTGTAAGACCATGTCTAGGACATCGGCATC
1 GA-TATGTGATTT-CGTGTAAGACCACGTCTAGGACGTTGGCATC
* * ** *
70056453 -ATATTTGATTTCCTGTAAGACCTTGTCTAGGATAG-TGGCATC
1 GATATGTGATTTCGTGTAAGACCACGTCTAGGA-CGTTGGCATC
* * * *
70056495 GATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATGTGATTTCGTGTAAGACCACGTCTAGGACGTTGGCAT
70056537 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 19, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
42 26 0.25
43 51 0.50
44 26 0.25
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
GATATGTGATTTCGTGTAAGACCACGTCTAGGACGTTGGCATC
Found at i:70056451 original size:44 final size:43
Alignment explanation
Indices: 70056370--70056474 Score: 106
Period size: 44 Copynumber: 2.4 Consensus size: 43
70056360 GGATCTGATA
** *
70056370 TGTGATTTCGTGTAAGACCACATCTAGGATGTTGGCATCGAGT
1 TGTGATTTCGTGTAAGACCACATCTAGGACATCGGCATCGAGT
* **
70056413 TGTGATTTATGTGTAAGACCATGTCTAGGACATCGGCATC-A-T
1 TGTGATTT-CGTGTAAGACCACATCTAGGACATCGGCATCGAGT
* *
70056455 ATTTGATTTCCTGTAAGACC
1 -TGTGATTTCGTGTAAGACC
70056475 TTGTCTAGGA
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 10 0.20
43 16 0.31
44 25 0.49
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
TGTGATTTCGTGTAAGACCACATCTAGGACATCGGCATCGAGT
Found at i:70086028 original size:15 final size:17
Alignment explanation
Indices: 70086003--70086035 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
70085993 TTGAATGGAA
70086003 TTATATTTGAAT-CATT
1 TTATATTTGAATACATT
70086019 TTAT-TTTGAATACATT
1 TTATATTTGAATACATT
70086035 T
1 T
70086036 AGATCAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.30, C:0.06, G:0.06, T:0.58
Consensus pattern (17 bp):
TTATATTTGAATACATT
Found at i:70086462 original size:43 final size:42
Alignment explanation
Indices: 70086350--70086462 Score: 120
Period size: 42 Copynumber: 2.7 Consensus size: 42
70086340 TGTGTTCTCC
* * *
70086350 TGTAAGACAACGTCTGGGACGTTGGCATCGATATGTGATTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACATGTGATTCA
* * * **
70086392 TGTAATACCCCATCTAAGACAG-TGGCATCGACATGTGATTACA
1 TGTAAGACCACGTCTGGGAC-GTTGGCATCGACATGTGATT-CA
*
70086435 TGTAAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
70086463 TGTACGATAT
Statistics
Matches: 54, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
42 32 0.59
43 22 0.41
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACATGTGATTCA
Found at i:70092563 original size:56 final size:55
Alignment explanation
Indices: 70092501--70092683 Score: 235
Period size: 56 Copynumber: 3.3 Consensus size: 55
70092491 GAGATTGGCG
* *
70092501 CTAAGTGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGCGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
*
70092557 CTAAGTGTGCGAGTTTGACTATGT-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AAT-TGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
* * * * *
70092613 CTAAGTGTGCGAGCTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAATTGTG-AGCACTAAGTGTGCGAGTTTGACTATGTAGCA
70092669 CTAAGTGTGCGAGTT
1 CTAAGTGTGCGAGTT
70092684 GATTATATAG
Statistics
Matches: 112, Mismatches: 11, Indels: 8
0.85 0.08 0.06
Matches are distributed among these distances:
54 2 0.02
55 17 0.15
56 90 0.80
57 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (55 bp):
CTAAGTGTGCGAGTTTAATTGTGAGCACTAAGTGTGCGAGTTTGACTATGTAGCA
Found at i:70092583 original size:28 final size:28
Alignment explanation
Indices: 70092526--70092706 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
70092516 TAAATTGTGC
*
70092526 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
70092553 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
70092581 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
70092609 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
70092637 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
* *
70092665 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGACTATGT
*
70092692 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70092707 GACTTATTAT
Statistics
Matches: 147, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
27 40 0.27
28 107 0.73
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:70100774 original size:28 final size:28
Alignment explanation
Indices: 70100717--70100869 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
70100707 TAAATTGTGC
* *
70100717 AGCACTAAGTGTGCGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70100744 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70100772 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
70100800 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* * *
70100828 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
70100855 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70100870 GACTTAATAT
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 37 0.32
28 79 0.68
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:70100860 original size:83 final size:83
Alignment explanation
Indices: 70100717--70100869 Score: 236
Period size: 83 Copynumber: 1.8 Consensus size: 83
70100707 TAAATTGTGC
* *
70100717 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
70100782 GTGCGAGTTTGACTATGT
66 GTGCGAGTTTGACTATGT
* * * *
70100800 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAGGTGTGCGAG-CTGATTATATAGCACTGAG
1 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAG
70100864 TGTGCG
65 TGTGCG
70100870 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 38 0.60
84 25 0.40
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (83 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTCTGATTATATAGCACTAAGT
GTGCGAGTTTGACTATGT
Found at i:70115750 original size:27 final size:27
Alignment explanation
Indices: 70115719--70115896 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70115709 TAAATTGTAC
70115719 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70115746 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70115772 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70115800 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70115828 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70115855 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70115882 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70115897 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70115833 original size:82 final size:81
Alignment explanation
Indices: 70115720--70115875 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70115710 AAATTGTACA
* *
70115720 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70115784 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70115801 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70115866 TGCGAGTTGA
65 TGCGAATTGA
70115876 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70115887 original size:82 final size:81
Alignment explanation
Indices: 70115716--70115896 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
70115706 GATTAAATTG
* *
70115716 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70115781 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70115797 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70115861 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70115879 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70115897 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70118472 original size:25 final size:25
Alignment explanation
Indices: 70118443--70118490 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
70118433 TTATAATATG
* * *
70118443 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
70118468 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
70118491 GTTTAAATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:70118555 original size:20 final size:20
Alignment explanation
Indices: 70118526--70118572 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
70118516 ATTTTGATAA
*
70118526 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
70118546 ACATGATATGTATGCTATGC
1 ACATGATATGTATGATATGC
70118566 ACATGAT
1 ACATGAT
70118573 GTATTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:70118680 original size:24 final size:24
Alignment explanation
Indices: 70118621--70118741 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
70118611 GGAGGAAGTG
70118621 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
70118645 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
70118670 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
70118694 TAAAAAGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
* *
70118717 TGAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
70118742 ATGAAAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 17 0.20
24 39 0.45
25 31 0.36
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:70118693 original size:49 final size:47
Alignment explanation
Indices: 70118621--70118750 Score: 163
Period size: 49 Copynumber: 2.7 Consensus size: 47
70118611 GGAGGAAGTG
*
70118621 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGA-AAAAGGCTT-TGCCCCAGTTAT
*
70118670 TAAAAGGGCTTATGCCCCAGTTATTAAAAAGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATGAAAAAGGCTTTGCCCCAGTTAT
* *
70118717 TGAAAGAGGC-TAGGCCTCCAGTTATATGAAAAAG
1 TAAAAG-GGCTTATGCC-CCAG-T-TATGAAAAAG
70118751 CAGCTATGCT
Statistics
Matches: 72, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
47 22 0.31
48 15 0.21
49 26 0.36
50 9 0.12
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATGAAAAAGGCTTTGCCCCAGTTAT
Found at i:70118989 original size:31 final size:31
Alignment explanation
Indices: 70118935--70118995 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
70118925 CGTTTACAGT
* *
70118935 AAAGGCTTTGGCCCAGTAATATGAGATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
70118966 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
70118996 AAATATGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:70127194 original size:60 final size:59
Alignment explanation
Indices: 70127070--70127206 Score: 152
Period size: 60 Copynumber: 2.3 Consensus size: 59
70127060 CAGAGTTAAC
* *
70127070 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATAT
* * * *
70127131 TGGGCCTAGCCCATATCAGTGTCAATCTGGGCCGTAGCCCTATTACA-AGTC-GAGATATGT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATAT
*
70127191 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
70127207 TAACACAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 51 0.77
61 11 0.17
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (59 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATAT
Found at i:70127224 original size:20 final size:20
Alignment explanation
Indices: 70127199--70127244 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
70127189 GTTGGGCCTT
70127199 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
70127219 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
70127238 GCCCATA
1 GCCCATA
70127245 ACAAAACTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:70129636 original size:18 final size:19
Alignment explanation
Indices: 70129613--70129649 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
70129603 AGGCCTCTTG
*
70129613 GGTA-TTTATTTTTAATTT
1 GGTATTTTACTTTTAATTT
70129631 GGTATTTTACTTTTAATTT
1 GGTATTTTACTTTTAATTT
70129650 TTGGATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.03, G:0.11, T:0.65
Consensus pattern (19 bp):
GGTATTTTACTTTTAATTT
Found at i:70142389 original size:27 final size:26
Alignment explanation
Indices: 70142332--70142446 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
70142322 CAGCGTTGCT
* * *
70142332 ACCAGAACAGATAATCTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
70142358 ACCAGAACAGATACTTGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
70142385 ACCAGAATAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
* *
70142412 ACCAGATCAGATAAATGTGGCATAGCC
1 ACCAGAACAGAT-AATGTGGCAGAGCC
70142439 ACCAGAAC
1 ACCAGAAC
70142447 GCTTCCTCCA
Statistics
Matches: 76, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
26 13 0.17
27 62 0.82
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:70143880 original size:24 final size:24
Alignment explanation
Indices: 70143845--70143944 Score: 146
Period size: 24 Copynumber: 4.2 Consensus size: 24
70143835 CCAAAACTGT
* *
70143845 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
* *
70143869 TCTCCCTTATCAGCTCCTAAACCC
1 TCTCCCTTATCAACTCCTAAATCC
*
70143893 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
*
70143917 TATCCCTTATCAACTCCTAAATCC
1 TCTCCCTTATCAACTCCTAAATCC
70143941 TCTC
1 TCTC
70143945 TTGACAGACT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 70 1.00
ACGTcount: A:0.25, C:0.41, G:0.02, T:0.32
Consensus pattern (24 bp):
TCTCCCTTATCAACTCCTAAATCC
Found at i:70148765 original size:23 final size:23
Alignment explanation
Indices: 70148725--70148805 Score: 92
Period size: 23 Copynumber: 3.4 Consensus size: 23
70148715 CAACTCATAT
* *
70148725 GAGCTTACTG-TTCAGCTCGATA
1 GAGCTTACCGTTTCAGCTCAATA
70148747 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACCGTTTCAGCTCAATA
* *
70148770 GAGCTTACTGTTCATCAGCTCAAGA
1 GAGCTTACCGTT--TCAGCTCAATA
70148795 GGAGCTTACCG
1 -GAGCTTACCG
70148806 ATCATGGCTC
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
22 9 0.18
23 22 0.44
25 10 0.20
26 9 0.18
ACGTcount: A:0.25, C:0.25, G:0.22, T:0.28
Consensus pattern (23 bp):
GAGCTTACCGTTTCAGCTCAATA
Found at i:70148809 original size:23 final size:23
Alignment explanation
Indices: 70148712--70148823 Score: 86
Period size: 23 Copynumber: 4.7 Consensus size: 23
70148702 CTTACCGATA
* *
70148712 TATCAACTC-ATATGAGCTTACTG
1 TATCAGCTCAATA-GAGCTTACCG
*
70148735 T-TCAGCTCGATAGAGCTTACCG
1 TATCAGCTCAATAGAGCTTACCG
* *
70148757 TTTCAGCTCAATAGAGCTTACTG
1 TATCAGCTCAATAGAGCTTACCG
*
70148780 TTCATCAGCTCAAGAGGAGCTTACCG
1 -T-ATCAGCTCAATA-GAGCTTACCG
*
70148806 -ATCATGGCTCAAAAGAGC
1 TATCA--GCTCAATAGAGC
70148824 ATAAATGATA
Statistics
Matches: 74, Mismatches: 8, Indels: 13
0.78 0.08 0.14
Matches are distributed among these distances:
22 16 0.22
23 27 0.36
24 5 0.07
25 17 0.23
26 9 0.12
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (23 bp):
TATCAGCTCAATAGAGCTTACCG
Found at i:70149004 original size:20 final size:20
Alignment explanation
Indices: 70148949--70148992 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
70148939 ATAAGACATG
*
70148949 TGTTTATATGGATGAATTAC
1 TGTTGATATGGATGAATTAC
70148969 TGTTGATATGGATGAATTAC
1 TGTTGATATGGATGAATTAC
70148989 TGTT
1 TGTT
70148993 ATTACTGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (20 bp):
TGTTGATATGGATGAATTAC
Found at i:70156007 original size:46 final size:47
Alignment explanation
Indices: 70155898--70156015 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 47
70155888 TCTCAACATT
*
70155898 GATGCATGTCCCAGA-ATGTCTTACACTGGCTTAAATATCACATGGCC
1 GATGCATGTTCCAGACATGTCTTACACTGGCTTAAATAT-ACATGGCC
* **
70155945 GATGCATG-TCCTAGACATGTCTTACACTGGCTCT-CATAT-TGTGGCC
1 GATGCATGTTCC-AGACATGTCTTACACTGGCT-TAAATATACATGGCC
70155991 GATGCATGTTCCAGACATGTCTTAC
1 GATGCATGTTCCAGACATGTCTTAC
70156016 GCTAGCACAC
Statistics
Matches: 63, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
46 28 0.44
47 14 0.22
48 20 0.32
49 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.20, T:0.31
Consensus pattern (47 bp):
GATGCATGTTCCAGACATGTCTTACACTGGCTTAAATATACATGGCC
Found at i:70158655 original size:42 final size:42
Alignment explanation
Indices: 70158583--70158692 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
70158573 TCGTTTCAAT
* * *
70158583 GCCATATCCCTGATATGGTCTTACATGAAAT-ATCATATCGAC
1 GCCATATCCCTGATATGGTCTTATACGAAATCA-CATACCGAC
* * * *
70158625 GCCATGTTCCTGACATGGTCTTATACGAAATCACATACCGAG
1 GCCATATCCCTGATATGGTCTTATACGAAATCACATACCGAC
*
70158667 GCCATATCCCAGATATGGTCTTATAC
1 GCCATATCCCTGATATGGTCTTATAC
70158693 AGAATCTTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 55 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (42 bp):
GCCATATCCCTGATATGGTCTTATACGAAATCACATACCGAC
Found at i:70161751 original size:28 final size:28
Alignment explanation
Indices: 70161688--70161869 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
70161678 ATATTAAGTC
*
70161688 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70161715 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
70161743 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70161771 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
70161799 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
70161827 CGCGCACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
70161856 CGTACACTTAGTGC
1 CGCACACTTAGTGC
70161870 CAATCTCATG
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
27 21 0.15
28 103 0.73
29 17 0.12
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:70166382 original size:46 final size:45
Alignment explanation
Indices: 70166314--70166484 Score: 164
Period size: 46 Copynumber: 3.7 Consensus size: 45
70166304 TCGCGAGGCT
* * * *
70166314 GATGCATGTCCCAAATAAGTCTTACACTAGCTCTCGTCTCAACGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCT-AACGCC
* *
70166360 GATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCTTAAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT---CATC-TAACGCC
* * * * ***
70166408 AATGCATGTCCTAGACATATCTTACACTAGCTCTCATATTGTGTCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAACG-CC
70166454 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
70166485 ACACGTATCA
Statistics
Matches: 102, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
45 3 0.03
46 61 0.60
48 36 0.35
49 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTAACGCC
Found at i:70166391 original size:94 final size:94
Alignment explanation
Indices: 70166270--70166484 Score: 211
Period size: 94 Copynumber: 2.3 Consensus size: 94
70166260 AAGCTAACGT
* * * * *** * **
70166270 CATGTCCCAGATAGGTTTTACAGTAGCTTGTCCATCGCGAGGCTGATGCATGTCCCA-A-ATAAG
1 CATGTCCCAGACATGTCTTACACTAGCTTAAACATCGCAAGGCCAATGCATGTCCCAGACAT-A-
* *
70166333 TCTTACACTAGCTCTCGTCTCAACG-CCGATG
64 TCTTACACTAGCTCTCATAT-AACGTCCGATG
* ** *
70166364 CATGTCCCAGACATGTCTTACACTAGCTTAAATATCTTAAGGCCAATGCATGTCCTAGACATATC
1 CATGTCCCAGACATGTCTTACACTAGCTTAAACATCGCAAGGCCAATGCATGTCCCAGACATATC
***
70166429 TTACACTAGCTCTCATATTGTGTCCGATG
66 TTACACTAGCTCTCATATAACGTCCGATG
70166458 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
70166485 ACACGTATCA
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
93 1 0.01
94 94 0.95
95 2 0.02
96 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTTAAACATCGCAAGGCCAATGCATGTCCCAGACATATC
TTACACTAGCTCTCATATAACGTCCGATG
Found at i:70166424 original size:48 final size:46
Alignment explanation
Indices: 70166361--70166484 Score: 153
Period size: 48 Copynumber: 2.7 Consensus size: 46
70166351 CTCAACGCCG
70166361 ATGCATGTCCCAGACATGTCTTACACTAGCT-TAAATATCT-TAAGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCT-AATAT-TGT--GGCCA
* * * * *
70166409 ATGCATGTCCTAGACATATCTTACACTAGCTCTCATATTGTGTCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTAATATTGTGGCCA
70166455 ATGCATGTCCCAGACATGTCTTACACTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
70166485 ACACGTATCA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
46 31 0.46
47 1 0.01
48 34 0.51
49 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTAATATTGTGGCCA
Found at i:70168870 original size:42 final size:44
Alignment explanation
Indices: 70168805--70168918 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 44
70168795 ACCGACATTC
* * ** *
70168805 AGCCTGCTAGGTTTAAAAACCCGAAT-TCAT-TCACCGGCATT-T
1 AGCCTGCTAGGCTCAAAGGCCCGAATAT-ATCTCACCAGCATTAT
*
70168847 TGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCAGCATTAT
1 AGCCTGCTAGGCTCAAAGGCCCGAAT-ATATCTCACCAGCATTAT
*
70168892 AACCTGCTAGGCTCAAAGGCCCGAATA
1 AGCCTGCTAGGCTCAAAGGCCCGAATA
70168919 GTACAGCACA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 21 0.35
43 2 0.03
44 12 0.20
45 25 0.42
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (44 bp):
AGCCTGCTAGGCTCAAAGGCCCGAATATATCTCACCAGCATTAT
Found at i:70174638 original size:27 final size:27
Alignment explanation
Indices: 70174605--70174811 Score: 315
Period size: 27 Copynumber: 7.6 Consensus size: 27
70174595 TAAATTGTGC
*
70174605 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
70174632 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
70174660 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
70174687 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
70174715 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70174742 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* * *
70174770 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70174797 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70174812 GACTTAATAT
Statistics
Matches: 168, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
27 91 0.54
28 77 0.46
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70174669 original size:55 final size:55
Alignment explanation
Indices: 70174605--70174811 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
70174595 TAAATTGTGC
70174605 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
70174660 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* *
70174715 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * * *
70174770 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
70174812 GACTTAATAT
Statistics
Matches: 147, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 147 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:70180853 original size:39 final size:39
Alignment explanation
Indices: 70180808--70180887 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
70180798 ACCCAATACA
70180808 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
1 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
70180847 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
1 AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
70180886 AA
1 AA
70180888 CTTACTTATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.45, C:0.17, G:0.03, T:0.35
Consensus pattern (39 bp):
AATTATACATGCAAACTTATTATAAACTTTATCTAAACC
Found at i:70184877 original size:21 final size:20
Alignment explanation
Indices: 70184849--70184887 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
70184839 CAAAACTTGT
*
70184849 ATAACTATTATCAAACATTC
1 ATAACTATCATCAAACATTC
70184869 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
70184888 CAAAATAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:70185287 original size:16 final size:17
Alignment explanation
Indices: 70185266--70185300 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
70185256 ACCTTCACTT
70185266 TAAAAACC-ATAGCTAA
1 TAAAAACCTATAGCTAA
*
70185282 TAAAAACCTTTAGCTAA
1 TAAAAACCTATAGCTAA
70185299 TA
1 TA
70185301 GAACTAAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (17 bp):
TAAAAACCTATAGCTAA
Found at i:70189726 original size:53 final size:47
Alignment explanation
Indices: 70189660--70189785 Score: 171
Period size: 47 Copynumber: 2.6 Consensus size: 47
70189650 GCGAATGTCT
*
70189660 GAACTCATTGAGTTGAGTCCGAGTTCGAGTTCGAGACATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC--G-T-GA-A-ATGTAACTAGGCATCC
* *
70189713 GAGCTCGTTGAGTTGAGTCTGAGTTCGTGAAATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
70189760 GAACTCGTTGAGTTGAGTCCGAGTTC
1 GAACTCGTTGAGTTGAGTCCGAGTTC
70189786 ACTTATGGAT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
47 40 0.59
48 1 0.01
49 2 0.03
50 1 0.01
51 1 0.01
53 23 0.34
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (47 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCC
Found at i:70192213 original size:41 final size:40
Alignment explanation
Indices: 70192168--70192285 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 40
70192158 TTATAATCTT
*
70192168 ACACACTAAGTGCCTTTCATAGCCGAAGCTATCTCAACCTC
1 ACACACTAAGTGCCTTTCATAGCTGAAGCTATCTCAA-CTC
* * *
70192209 ACACACTAAGTGCCATACATAGCTGAAGGTAT-TCCAACTC
1 ACACACTAAGTGCCTTTCATAGCTGAAGCTATCT-CAACTC
** * *
70192249 GTACACTAACTGCCATAT-ATAGCTGAAGCTATCTCAA
1 ACACACTAAGTGCC-TTTCATAGCTGAAGCTATCTCAA
70192286 AATGCACACA
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
40 31 0.49
41 32 0.51
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.25
Consensus pattern (40 bp):
ACACACTAAGTGCCTTTCATAGCTGAAGCTATCTCAACTC
Found at i:70195621 original size:48 final size:48
Alignment explanation
Indices: 70195565--70195737 Score: 199
Period size: 48 Copynumber: 3.6 Consensus size: 48
70195555 CTAAGTGCTC
* * *
70195565 ATATCATGGCCCAAAGCCAACTCAATA-TATCTCGCACTT-GAAGTCCCG
1 ATATCATGGCCCGAAGCCAAATCAA-AGTAACTCGCA-TTCGAAGTCCCG
***
70195613 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTGTTG
1 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTCCCG
* * * **
70195661 ATATCATGGACCGAAGCCAAATCAAAGTAACTCAC-TCCCGAAGAGCCG
1 ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCAT-TCGAAGTCCCG
70195709 ATATCATGGCCCGAAGCCAAATCAAAGTA
1 ATATCATGGCCCGAAGCCAAATCAAAGTA
70195738 TTTCCTAATG
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 4 0.04
48 105 0.96
ACGTcount: A:0.35, C:0.27, G:0.18, T:0.20
Consensus pattern (48 bp):
ATATCATGGCCCGAAGCCAAATCAAAGTAACTCGCATTCGAAGTCCCG
Found at i:70196372 original size:17 final size:17
Alignment explanation
Indices: 70196346--70196381 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
70196336 ATTCAAGATC
*
70196346 TTTAATAGTTTTGTAAA
1 TTTAACAGTTTTGTAAA
70196363 TTTAACAGTTTTGTAAA
1 TTTAACAGTTTTGTAAA
70196380 TT
1 TT
70196382 AGTCCCTCGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.11, T:0.53
Consensus pattern (17 bp):
TTTAACAGTTTTGTAAA
Found at i:70198280 original size:21 final size:21
Alignment explanation
Indices: 70198254--70198319 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
70198244 TAGGCCATGT
70198254 GCCACACACGGCATTAGACAC
1 GCCACACACGGCATTAGACAC
*
70198275 GCCACACACGGCATTAGACAT
1 GCCACACACGGCATTAGACAC
*
70198296 GCCACACACGGCATTAAACAC
1 GCCACACACGGCATTAGACAC
70198317 GCC
1 GCC
70198320 TATGTGTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.33, C:0.38, G:0.18, T:0.11
Consensus pattern (21 bp):
GCCACACACGGCATTAGACAC
Found at i:70205364 original size:18 final size:19
Alignment explanation
Indices: 70205326--70205368 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
70205316 AACAATTAAT
70205326 AATTAATATATGCATATTA
1 AATTAATATATGCATATTA
* *
70205345 AATTATTATTTGCA-ATTA
1 AATTAATATATGCATATTA
70205363 AATTAA
1 AATTAA
70205369 AAATAAAAGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (19 bp):
AATTAATATATGCATATTA
Found at i:70207900 original size:19 final size:19
Alignment explanation
Indices: 70207876--70207913 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
70207866 TGGGCCTCGA
70207876 TGGGCCAAAATAGG-TCGTG
1 TGGGCC-AAATAGGCTCGTG
*
70207895 TGGGCCCAATAGGCTCGTG
1 TGGGCCAAATAGGCTCGTG
70207914 GACTCATACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATAGGCTCGTG
Found at i:70208201 original size:26 final size:27
Alignment explanation
Indices: 70208131--70208315 Score: 160
Period size: 27 Copynumber: 7.0 Consensus size: 27
70208121 TAAGACCTTG
* * *
70208131 ATTTGTAAAATTACCAAAATACCCTTG
1 ATTTGTAAAATTACCGAAATACCCCTA
* * *
70208158 AGTTATAAAATTACCGAAATACCTCT-
1 ATTTGTAAAATTACCGAAATACCCCTA
* * *
70208184 ATTTGTTAAATTATCGAAATACACCTA
1 ATTTGTAAAATTACCGAAATACCCCTA
** *
70208211 GGTTGTAAAATTACCAAAATACCCCTA
1 ATTTGTAAAATTACCGAAATACCCCTA
* ** *
70208238 ATTTGTGAAATTAATGAAATACCCCTG
1 ATTTGTAAAATTACCGAAATACCCCTA
* **
70208265 ATTTGTAAAATTA-CAAAATACCCCCG
1 ATTTGTAAAATTACCGAAATACCCCTA
* *
70208291 ATTTGT-AAATGACCGTAATACCCCT
1 ATTTGTAAAATTACCGAAATACCCCT
70208316 GTAGGGTAAA
Statistics
Matches: 124, Mismatches: 32, Indels: 5
0.77 0.20 0.03
Matches are distributed among these distances:
25 5 0.04
26 45 0.36
27 74 0.60
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
ATTTGTAAAATTACCGAAATACCCCTA
Found at i:70208220 original size:53 final size:53
Alignment explanation
Indices: 70208131--70208299 Score: 175
Period size: 53 Copynumber: 3.2 Consensus size: 53
70208121 TAAGACCTTG
* * * * *
70208131 ATTTGTAAAATTACCAAAATACCCTTGAGTTATAAAATTACCGAAATACCTCT-
1 ATTTGTAAAATTATCGAAATACCC-TGAGTTGTAAAATTACCAAAATACCCCTA
*
70208184 ATTTGTTAAATTATCGAAATACACCT-AGGTTGTAAAATTACCAAAATACCCCTA
1 ATTTGTAAAATTATCGAAATAC-CCTGA-GTTGTAAAATTACCAAAATACCCCTA
* * **
70208238 ATTTGTGAAATTAAT-GAAATACCCCTGATTTGTAAAATTA-CAAAATACCCCCG
1 ATTTGTAAAATT-ATCGAAATA-CCCTGAGTTGTAAAATTACCAAAATACCCCTA
70208291 ATTTGTAAA
1 ATTTGTAAA
70208300 TGACCGTAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
52 1 0.01
53 61 0.62
54 33 0.33
55 4 0.04
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (53 bp):
ATTTGTAAAATTATCGAAATACCCTGAGTTGTAAAATTACCAAAATACCCCTA
Found at i:70208284 original size:80 final size:80
Alignment explanation
Indices: 70208133--70208285 Score: 200
Period size: 80 Copynumber: 1.9 Consensus size: 80
70208123 AGACCTTGAT
* * * * *
70208133 TTGTAAAATTACCAAAATACCCTTGAGTTATAAAATTACCGAAATACCTCTATTTGTTAAATTAT
1 TTGTAAAATTACCAAAATACCCCTAAGTTATAAAATTAACGAAATACCCCTATTTGTAAAATTAT
*
70208198 CGAAATACACCTAGG
66 CAAAATACACCTAGG
* * * *
70208213 TTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTAATGAAATACCCCTGATTTGTAAAATTA
1 TTGTAAAATTACCAAAATACCCCTAAGTTATAAAATTAACGAAATACCCCT-ATTTGTAAAATTA
70208278 -CAAAATAC
65 TCAAAATAC
70208286 CCCCGATTTG
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 50 0.81
81 12 0.19
ACGTcount: A:0.42, C:0.17, G:0.09, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCAAAATACCCCTAAGTTATAAAATTAACGAAATACCCCTATTTGTAAAATTAT
CAAAATACACCTAGG
Found at i:70208411 original size:27 final size:27
Alignment explanation
Indices: 70208297--70208399 Score: 161
Period size: 27 Copynumber: 3.8 Consensus size: 27
70208287 CCCGATTTGT
70208297 AAATGACCGTAATACCCCTGTAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTA
* *
70208324 AAATGACCGTAATGCCTCTGTAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTA
* * *
70208351 AACTGACCATAATACCCCTATAGGGTA
1 AAATGACCGTAATACCCCTGTAGGGTA
70208378 AAATGACCGTAATACCCCTGTA
1 AAATGACCGTAATACCCCTGTA
70208400 TTGCAAAATG
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (27 bp):
AAATGACCGTAATACCCCTGTAGGGTA
Found at i:70208607 original size:27 final size:27
Alignment explanation
Indices: 70208545--70208628 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
70208535 ATGGAAGAAG
* *
70208545 TACTG-TACTGGTGACTATGTCAC-AT
1 TACTGATACTGGTGGCTATGCCACAAT
70208570 TCACT-ATTACTGGTGGCTATGCCACAAT
1 T-ACTGA-TACTGGTGGCTATGCCACAAT
* * *
70208598 TACTGATACTGGTAGCT-TGCAACATT
1 TACTGATACTGGTGGCTATGCCACAAT
70208624 TACTG
1 TACTG
70208629 TTTCTGGCAG
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.02
26 15 0.31
27 29 0.59
28 4 0.08
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
TACTGATACTGGTGGCTATGCCACAAT
Found at i:70208635 original size:26 final size:27
Alignment explanation
Indices: 70208577--70208644 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 27
70208567 CATTCACTAT
* *
70208577 TACTGGTGGCTATGCCACAATTACTGA
1 TACTGGTAGCTATGCAACAATTACTGA
* *
70208604 TACTGGTAGCT-TGCAACATTTACTGT
1 TACTGGTAGCTATGCAACAATTACTGA
* *
70208630 TTCTGGCAGCTATGC
1 TACTGGTAGCTATGC
70208645 TGTATTATTA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 21 0.62
27 13 0.38
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (27 bp):
TACTGGTAGCTATGCAACAATTACTGA
Found at i:70208887 original size:33 final size:33
Alignment explanation
Indices: 70208813--70208904 Score: 123
Period size: 33 Copynumber: 2.8 Consensus size: 33
70208803 TTAGGCCCAC
*
70208813 ACTGTTACTGTATAGGGCTAAAG-CCAGACTAT
1 ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
* *
70208845 TCTGTTACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
* * *
70208878 ACTGATACTGGATAGGGCTCAGGCCCA
1 ACTGTTACTGTATAGGGCTAAGGCCCA
70208905 CACAATTACT
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
32 21 0.40
33 31 0.60
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (33 bp):
ACTGTTACTGTATAGGGCTAAGGCCCAGACTAT
Found at i:70213679 original size:27 final size:26
Alignment explanation
Indices: 70213639--70213819 Score: 146
Period size: 27 Copynumber: 6.7 Consensus size: 26
70213629 GATCGTTAAG
* *
70213639 ACCCCGATTTGTAAAATTACCGAAAT
1 ACCCCGAGTTGTAAAATTACCAAAAT
* * *
70213665 ACTCCCGGGTTGTAAAATTATCAAGAT
1 AC-CCCGAGTTGTAAAATTACCAAAAT
* *
70213692 ACCCATGATTTGTAAAATTACCAAAAT
1 ACCC-CGAGTTGTAAAATTACCAAAAT
* * **
70213719 ACCATCGATTTGTAAAATTACTGAAAT
1 ACC-CCGAGTTGTAAAATTACCAAAAT
*
70213746 ACCCCCAGGTTGTAAAATTACCAAAAT
1 ACCCCGA-GTTGTAAAATTACCAAAAT
* * * *
70213773 ACCCCTAATTTGTGAAATTACTAAAAT
1 ACCCC-GAGTTGTAAAATTACCAAAAT
* *
70213800 ACCCCAAATTTGTAAAATTA
1 ACCCC-GAGTTGTAAAATTA
70213820 TTGAAATACC
Statistics
Matches: 125, Mismatches: 25, Indels: 9
0.79 0.16 0.06
Matches are distributed among these distances:
26 6 0.05
27 118 0.94
28 1 0.01
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (26 bp):
ACCCCGAGTTGTAAAATTACCAAAAT
Found at i:70213732 original size:54 final size:53
Alignment explanation
Indices: 70213639--70213819 Score: 181
Period size: 54 Copynumber: 3.4 Consensus size: 53
70213629 GATCGTTAAG
* *
70213639 ACCCC-GATTTGTAAAATTACCGAAATACTCCCGGGTTGTAAAATTA-TCAAGAT
1 ACCCCAGATTTGTAAAATTACCAAAATAC-CCCGAGTTGTAAAATTACTCAA-AT
* * *
70213692 A-CCCATGATTTGTAAAATTACCAAAATACCATCGATTTGTAAAATTACTGAAAT
1 ACCCCA-GATTTGTAAAATTACCAAAATACC-CCGAGTTGTAAAATTACTCAAAT
* * * * *
70213746 ACCCCCAG-GTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAAT
1 A-CCCCAGATTTGTAAAATTACCAAAATACCCC-GAGTTGTAAAATTACTCAAAT
*
70213800 ACCCCAAATTTGTAAAATTA
1 ACCCCAGATTTGTAAAATTA
70213820 TTGAAATACC
Statistics
Matches: 108, Mismatches: 12, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
52 3 0.03
53 8 0.07
54 89 0.82
55 4 0.04
56 4 0.04
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
ACCCCAGATTTGTAAAATTACCAAAATACCCCGAGTTGTAAAATTACTCAAAT
Found at i:70213784 original size:81 final size:80
Alignment explanation
Indices: 70213639--70213831 Score: 260
Period size: 81 Copynumber: 2.4 Consensus size: 80
70213629 GATCGTTAAG
* * * * * *
70213639 ACCCCGATTTGTAAAATTACCGAAATACTCCCGGGTTGTAAAATTATCAAGATACCCATGATTTG
1 ACCCCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCATAATTTG
70213704 TAAAATTACCAAAAT
66 TAAAATTACCAAAAT
* *
70213719 ACCATCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCCTAATTT
1 ACC-CCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCATAATTT
* *
70213784 GTGAAATTACTAAAAT
65 GTAAAATTACCAAAAT
* *
70213800 ACCCCAAATTTGTAAAATTATTGAAATACCCC
1 ACCCC-GATTTGTAAAATTACTGAAATACCCC
70213832 TTGATTTGTA
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
80 4 0.04
81 94 0.96
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (80 bp):
ACCCCGATTTGTAAAATTACTGAAATACCCCCAGGTTGTAAAATTACCAAAATACCCATAATTTG
TAAAATTACCAAAAT
Done.