Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 22 of 295
Found at i:6664744 original size:20 final size:20
Alignment explanation
Indices: 6664701--6664744 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
6664691 ACTTTTTATG
**
6664701 ATTTTTTAATTTTATTATTT
1 ATTTTTTAATTTTATTATAA
6664721 ATTTTTTAATATTT-TTATAA
1 ATTTTTTAAT-TTTATTATAA
6664741 ATTT
1 ATTT
6664745 AAAATTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
ATTTTTTAATTTTATTATAA
Found at i:6672169 original size:10 final size:9
Alignment explanation
Indices: 6672152--6672205 Score: 54
Period size: 10 Copynumber: 5.7 Consensus size: 9
6672142 TTTATTTTCG
6672152 TAATTTTTA
1 TAATTTTTA
6672161 TAATGTTTTA
1 TAAT-TTTTA
6672171 TAATTTTTTA
1 TAA-TTTTTA
*
6672181 TATTTTTTA
1 TAATTTTTA
* *
6672190 AAATTTGTTG
1 TAATTT-TTA
6672200 TAATTT
1 TAATTT
6672206 AAAAAACTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
9 14 0.38
10 22 0.59
11 1 0.03
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.65
Consensus pattern (9 bp):
TAATTTTTA
Found at i:6672188 original size:19 final size:20
Alignment explanation
Indices: 6672155--6672195 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
6672145 ATTTTCGTAA
*
6672155 TTTTTATAATGTTTTATAAT
1 TTTTTATAATGTTTTAAAAT
*
6672175 TTTTTAT-ATTTTTTAAAAT
1 TTTTTATAATGTTTTAAAAT
6672194 TT
1 TT
6672196 GTTGTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTATAATGTTTTAAAAT
Found at i:6679992 original size:27 final size:27
Alignment explanation
Indices: 6679937--6679992 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
6679927 CATATTAATT
* * *
6679937 ATTTGAATTAATTATTATTTTTATCAA
1 ATTTGAATTAATTATGATTTATATAAA
6679964 ATTTGAATTAATTATGATATTATA-AAA
1 ATTTGAATTAATTATGAT-TTATATAAA
6679991 AT
1 AT
6679993 AGGTATCCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (27 bp):
ATTTGAATTAATTATGATTTATATAAA
Found at i:6686542 original size:20 final size:20
Alignment explanation
Indices: 6686517--6686561 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6686507 CTTAGGAAAA
6686517 GTAAATCCTTAGAA-ATATTG
1 GTAAATCCTTA-AATATATTG
* *
6686537 GTAAATCGTTAAATATTTTG
1 GTAAATCCTTAAATATATTG
6686557 GTAAA
1 GTAAA
6686562 AACTTTTCCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.38
Consensus pattern (20 bp):
GTAAATCCTTAAATATATTG
Found at i:6695117 original size:26 final size:25
Alignment explanation
Indices: 6695078--6695185 Score: 126
Period size: 26 Copynumber: 4.2 Consensus size: 25
6695068 TGGTACAAAT
*
6695078 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAAT-GATTAGGTAAATGTTCCA
* * *
6695104 TAATAATGAATTAGGTAAATATTTCA
1 TGATAATG-ATTAGGTAAATGTTCCA
*
6695130 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GATTAGGTAAATGTTCCA
*
6695156 TGATAATTGTTTAGGTAAATGTTCCA
1 TGATAA-TGATTAGGTAAATGTTCCA
6695182 TGAT
1 TGAT
6695186 GGGCATTTCA
Statistics
Matches: 70, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.01
26 67 0.96
27 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.38
Consensus pattern (25 bp):
TGATAATGATTAGGTAAATGTTCCA
Found at i:6695156 original size:52 final size:52
Alignment explanation
Indices: 6695078--6695185 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 52
6695068 TGGTACAAAT
*
6695078 TGATAATAGGTTAGGTAAATGTTCCATAATAA-TGAATTAGGTAAATATTTCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATTG-ATTAGGTAAATATTCCA
* * * *
6695130 TGATAATGGGTTAGGTAAATGTTCCATGATAATTGTTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCATAATAATTGATTAGGTAAATATTCCA
6695182 TGAT
1 TGAT
6695186 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
52 48 0.96
53 2 0.04
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.38
Consensus pattern (52 bp):
TGATAATAGGTTAGGTAAATGTTCCATAATAATTGATTAGGTAAATATTCCA
Found at i:6697941 original size:3 final size:3
Alignment explanation
Indices: 6697933--6697978 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
6697923 GTACTTTTGC
* *
6697933 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAG TAT TAG TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6697979 GGTATTATTG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:6697983 original size:6 final size:6
Alignment explanation
Indices: 6697933--6697985 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
6697923 GTACTTTTGC
* * * * * *
6697933 TATTAT TATTAT TATTAT TATTAT TATTAT TATTAG TATTAG TATTGG
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG
6697981 TATTA
1 TATTA
6697986 TTGTTGTTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (6 bp):
TATTAG
Found at i:6698114 original size:37 final size:38
Alignment explanation
Indices: 6698026--6698116 Score: 91
Period size: 38 Copynumber: 2.4 Consensus size: 38
6698016 ATACTTATGT
* * *
6698026 ATTTTTTTAATATATATATGTCTTATTATTATCATATA
1 ATTTGTTTAATATATACATGTCATATTATTATCATATA
*
6698064 A-GTGCTTGT-ATATATACATGTACATATT-TTA-CATATA
1 ATTTG-TT-TAATATATACATGT-CATATTATTATCATATA
6698101 ATTTGTTTAATATATA
1 ATTTGTTTAATATATA
6698117 TACGTATACT
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
36 1 0.02
37 17 0.40
38 19 0.44
39 6 0.14
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.52
Consensus pattern (38 bp):
ATTTGTTTAATATATACATGTCATATTATTATCATATA
Found at i:6720053 original size:3 final size:3
Alignment explanation
Indices: 6719960--6720044 Score: 161
Period size: 3 Copynumber: 28.3 Consensus size: 3
6719950 GTACTTTTGC
6719960 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
6720008 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAG TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
6720045 GGTATTATTG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 80 1.00
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:6720181 original size:37 final size:38
Alignment explanation
Indices: 6720098--6720183 Score: 90
Period size: 38 Copynumber: 2.3 Consensus size: 38
6720088 ATGTATTTTT
* *
6720098 TTTAATATATATATGTCTTATTATTATCATATAAGTGC
1 TTTAATATATACATGTCATATTATTATCATATAAGTGC
*
6720136 TTGT-ATATATACATGTACATATT-TTA-CATATAATTTG-
1 TT-TAATATATACATGT-CATATTATTATCATATAA-GTGC
6720173 TTTAATATATA
1 TTTAATATATA
6720184 TACGTATACT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
36 1 0.02
37 16 0.39
38 18 0.44
39 6 0.15
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (38 bp):
TTTAATATATACATGTCATATTATTATCATATAAGTGC
Found at i:6720258 original size:37 final size:37
Alignment explanation
Indices: 6720177--6720258 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
6720167 AATTTGTTTA
* *
6720177 ATATATATACGTATACTCATATTTCTTTTTTATATAT
1 ATATATATACATATACTCATATTTATTTTTTATATAT
* *
6720214 ATCTATATACATATACAT-ATTTTTATTTTTTATA-AGT
1 ATATATATACATATAC-TCATATTTATTTTTTATATA-T
6720251 ATATATAT
1 ATATATAT
6720259 TTATATGTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
36 1 0.03
37 36 0.95
38 1 0.03
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (37 bp):
ATATATATACATATACTCATATTTATTTTTTATATAT
Found at i:6721595 original size:27 final size:27
Alignment explanation
Indices: 6721555--6721668 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
6721545 AGGAAGCGTC
6721555 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* *
6721582 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTATGCCACAAT-TATCTGAT
*
6721609 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCACAATTATCTGAT
* * *
6721636 TTAGTGGCTCA-GCCACAA-TATCTATAT
1 CTGGTGGCT-ATGCCACAATTATCT-GAT
6721663 CTGGTG
1 CTGGTG
6721669 ACTTCGTCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.10
27 63 0.86
28 3 0.04
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAATTATCTGAT
Found at i:6721619 original size:54 final size:54
Alignment explanation
Indices: 6721555--6721668 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
6721545 AGGAAGCGTC
* * *
6721555 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCAGCCACA-ATATCTATAT
* *
6721609 CTGGTGGCTATGCCACGATTATCTGATTTAGTGGCTCAGCCACAATATCTATAT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCAGCCACAATATCTATAT
6721663 CTGGTG
1 CTGGTG
6721669 ACTTCGTCAC
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
53 7 0.13
54 47 0.87
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCAGCCACAATATCTATAT
Found at i:6722043 original size:24 final size:26
Alignment explanation
Indices: 6722002--6722049 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
6721992 TTTGTTATAA
* *
6722002 AATAAAGAGAGATGATGAGAATAAAG
1 AATAAAGAGAAATGATGAAAATAAAG
6722028 AATAAAGA-AAAT-ATGAAAATAA
1 AATAAAGAGAAATGATGAAAATAA
6722050 CAGAGAATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 3 0.15
26 8 0.40
ACGTcount: A:0.65, C:0.00, G:0.19, T:0.17
Consensus pattern (26 bp):
AATAAAGAGAAATGATGAAAATAAAG
Found at i:6722786 original size:18 final size:19
Alignment explanation
Indices: 6722746--6722792 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
6722736 TTTCCCGAGA
* *
6722746 ATTTTAATATGCTTCTAGC
1 ATTTTAATATCCTTCAAGC
*
6722765 ATTTTAA-ATCCTTCAAGG
1 ATTTTAATATCCTTCAAGC
6722783 ATTTTAATAT
1 ATTTTAATAT
6722793 AAACTTTACT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.47
Consensus pattern (19 bp):
ATTTTAATATCCTTCAAGC
Found at i:6726202 original size:19 final size:19
Alignment explanation
Indices: 6726178--6726214 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
6726168 TTATATTTTA
6726178 TTTAAATT-TAATTTAATTT
1 TTTAAATTAT-ATTTAATTT
6726197 TTTAAATTATATTTAATT
1 TTTAAATTATATTTAATT
6726215 CAATTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTAAATTATATTTAATTT
Found at i:6728420 original size:31 final size:31
Alignment explanation
Indices: 6728382--6728445 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
6728372 CTTAACATTA
* *
6728382 ACTTAAATGAGAACTTTTGGATAATTTAGTG
1 ACTTAAATGAAAACTTTTGAATAATTTAGTG
6728413 ACTTAAATGAAAACTTTTGAATAATTTAGTG
1 ACTTAAATGAAAACTTTTGAATAATTTAGTG
6728444 AC
1 AC
6728446 CATTTTGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.38
Consensus pattern (31 bp):
ACTTAAATGAAAACTTTTGAATAATTTAGTG
Found at i:6733083 original size:22 final size:22
Alignment explanation
Indices: 6733053--6733096 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
6733043 TAGATTGTAT
* *
6733053 TTTGTTCTCTCTATTCAAATTA
1 TTTGCTCTCTCTACTCAAATTA
*
6733075 TTTGCTCTCTTTACTCAAATTA
1 TTTGCTCTCTCTACTCAAATTA
6733097 GTCATTACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.20, G:0.05, T:0.52
Consensus pattern (22 bp):
TTTGCTCTCTCTACTCAAATTA
Found at i:6733293 original size:20 final size:23
Alignment explanation
Indices: 6733242--6733294 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
6733232 TGTTAGTCAC
6733242 ACTAATTTTTAATAATATAAATA
1 ACTAATTTTTAATAATATAAATA
*
6733265 AATGAAATTTTTAATAA-A-AAAT-
1 ACT--AATTTTTAATAATATAAATA
6733287 ACTAATTT
1 ACTAATTT
6733295 ATTTTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
20 5 0.19
22 2 0.08
23 6 0.23
24 1 0.04
25 12 0.46
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (23 bp):
ACTAATTTTTAATAATATAAATA
Found at i:6743067 original size:24 final size:24
Alignment explanation
Indices: 6743040--6743089 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
6743030 AACCAACCAT
*
6743040 TAACTCCATCACCCCACTTGCCAC
1 TAACTCCATCACCCCACGTGCCAC
* *
6743064 TAACTTCATCACCCTACGTGCCAC
1 TAACTCCATCACCCCACGTGCCAC
6743088 TA
1 TA
6743090 GGGGTGTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.44, G:0.06, T:0.24
Consensus pattern (24 bp):
TAACTCCATCACCCCACGTGCCAC
Found at i:6743284 original size:18 final size:18
Alignment explanation
Indices: 6743244--6743303 Score: 75
Period size: 18 Copynumber: 3.3 Consensus size: 18
6743234 AATAAGTATA
* *
6743244 AAATTAACCGAATTTATC
1 AAATTAACCGAATTAACC
* * *
6743262 GAATTACCCGAATTACCC
1 AAATTAACCGAATTAACC
6743280 AAATTAACCGAATTAACC
1 AAATTAACCGAATTAACC
6743298 AAATTA
1 AAATTA
6743304 TTTGTATAAA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.45, C:0.22, G:0.07, T:0.27
Consensus pattern (18 bp):
AAATTAACCGAATTAACC
Found at i:6743295 original size:9 final size:9
Alignment explanation
Indices: 6743245--6743303 Score: 64
Period size: 9 Copynumber: 6.6 Consensus size: 9
6743235 ATAAGTATAA
6743245 AATTAACCG
1 AATTAACCG
* *
6743254 AATTTATCG
1 AATTAACCG
*
6743263 AATTACCCG
1 AATTAACCG
* *
6743272 AATTACCCA
1 AATTAACCG
6743281 AATTAACCG
1 AATTAACCG
*
6743290 AATTAACCA
1 AATTAACCG
6743299 AATTA
1 AATTA
6743304 TTTGTATAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:6743862 original size:24 final size:26
Alignment explanation
Indices: 6743812--6743864 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
6743802 TTTTTGGAGA
*
6743812 AAAAAGGAGAGAGATTCAAATACAAG
1 AAAAAGGAGAGACATTCAAATACAAG
*
6743838 AAAAA-GAGAGACTTTC-AATACAAG
1 AAAAAGGAGAGACATTCAAATACAAG
6743862 AAA
1 AAA
6743865 TACACAAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 9 0.36
26 5 0.20
ACGTcount: A:0.58, C:0.09, G:0.19, T:0.13
Consensus pattern (26 bp):
AAAAAGGAGAGACATTCAAATACAAG
Found at i:6744773 original size:16 final size:16
Alignment explanation
Indices: 6744749--6744786 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
6744739 TTTGGTTCGC
* *
6744749 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
6744765 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
6744781 TGTAAT
1 TGTAAT
6744787 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:6744831 original size:45 final size:44
Alignment explanation
Indices: 6744765--6744859 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
6744755 GGATTAGAGG
* *
6744765 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
6744810 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
6744854 TGTAAT
1 TGTAAT
6744860 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:6745042 original size:18 final size:17
Alignment explanation
Indices: 6745021--6745055 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6745011 TTATTATTTA
*
6745021 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6745039 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6745056 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6745049 original size:28 final size:27
Alignment explanation
Indices: 6744979--6745051 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
6744969 TTTATTATCA
*
6744979 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
6745007 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
6745034 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
6745052 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:6745168 original size:144 final size:147
Alignment explanation
Indices: 6744940--6745211 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
6744930 ATGATTATTG
6744940 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
*
6745005 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
6745070 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
6745089 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
6745151 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
6745212 ATATTCTTAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 92 0.76
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:6745186 original size:18 final size:17
Alignment explanation
Indices: 6745165--6745199 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6745155 TTATTATTAA
*
6745165 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6745183 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6745200 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6745243 original size:54 final size:54
Alignment explanation
Indices: 6745185--6745363 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
6745175 ATTAAAATAT
*
6745185 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
6745239 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
6745302 TAT
53 -AC
*
6745305 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
6745359 ATAAT
1 ATAAT
6745364 ATATGATTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:6745245 original size:61 final size:61
Alignment explanation
Indices: 6745180--6745367 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
6745170 TTTTAATTAA
*
6745180 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
6745241 AATATATGATACT-GTAAAA-T-ATAA-AATAACATAATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA-AT-ATTCTTATATGAATTTACTCA-AATCAT
6745300 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
6745361 AATATAT
1 AATATAT
6745368 GATTATAACT
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 29 0.31
60 16 0.17
61 37 0.39
62 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:6745278 original size:120 final size:120
Alignment explanation
Indices: 6745148--6745370 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
6745138 ATCATATTTA
* *
6745148 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
6745213 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
6745268 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
6745333 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGAT
6745371 TATAACTAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Found at i:6745306 original size:18 final size:17
Alignment explanation
Indices: 6745285--6745319 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6745275 TTATTATTAA
6745285 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
6745303 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
6745320 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:6745382 original size:17 final size:16
Alignment explanation
Indices: 6745360--6745406 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
6745350 ACTCAAATCA
6745360 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
6745377 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
6745391 TAAATATATGATTTAA
1 T-AATATATGATTTAA
6745407 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:6745407 original size:17 final size:17
Alignment explanation
Indices: 6745379--6745412 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
6745369 ATTATAACTA
*
6745379 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
6745396 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
6745413 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:6745555 original size:93 final size:92
Alignment explanation
Indices: 6745445--6745639 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
6745435 GATTATAGTT
* * *
6745445 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
6745508 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
6745538 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
6745603 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
6745630 TATGAATTTA
1 TATGAATTTA
6745640 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:6749991 original size:26 final size:24
Alignment explanation
Indices: 6749961--6750008 Score: 69
Period size: 26 Copynumber: 1.9 Consensus size: 24
6749951 AATAAAAAAA
*
6749961 TTAAAAATATAATAAATCAAATATAT
1 TTAAAAACATAA-AAA-CAAATATAT
6749987 TTAAAAACATAAAAACAAATAT
1 TTAAAAACATAAAAACAAATAT
6750009 TAAAACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 3 0.14
26 11 0.52
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (24 bp):
TTAAAAACATAAAAACAAATATAT
Found at i:6750028 original size:21 final size:21
Alignment explanation
Indices: 6749979--6750037 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
6749969 ATAATAAATC
*
6749979 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
6749999 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
6750021 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
6750038 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:6750337 original size:3 final size:3
Alignment explanation
Indices: 6750323--6750683 Score: 83
Period size: 3 Copynumber: 120.3 Consensus size: 3
6750313 AATAGTGTTT
* * *
6750323 TTA TTA TT- TTA TTA TTA TTT TTA CCTTT TTA -TA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TTA
* * * * * *
6750368 TTAA CCTA CTA TTA TTA TTT TTA TTA ATA -TA GTA TTA TT- TTT TTA
1 TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * *
6750413 TATA TTG TTA TTA TTA TTA GCA CGTA -TA TTA TTA TTA TTAA TGTG TCA
1 T-TA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A T-TA TTA
* * *
6750461 TTG TTA TT- TT- TTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
** *
6750502 TCTA TTA TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCG TTA TTT
1 T-TA TTA TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA
* * *
6750548 TCTA TTA TCA TTA ATA TGTCG TT- TGT- TTA TTA TTA TTA TTA TTA TTA
1 T-TA TTA TTA TTA TTA T-T-A TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* ** * * * * * * *
6750595 TTT TTA ACA CTA TTA TCA TCA TTA -TA TT- TAA TT- TTT TTA -AA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * * *
6750639 TTA TTA CCA TTA -TA TTA TTA TTA TTA TTA CTA TTT TTT TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
6750684 CCGTCCTATT
Statistics
Matches: 263, Mismatches: 61, Indels: 68
0.67 0.16 0.17
Matches are distributed among these distances:
2 31 0.12
3 203 0.77
4 21 0.08
5 7 0.03
6 1 0.00
ACGTcount: A:0.28, C:0.07, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:6750345 original size:20 final size:20
Alignment explanation
Indices: 6750320--6750430 Score: 64
Period size: 22 Copynumber: 5.1 Consensus size: 20
6750310 CGTAATAGTG
6750320 TTTTTATTATTTTATTATTA
1 TTTTTATTATTTTATTATTA
*
6750340 TTTTTACCTT-TTTATATTACTA
1 TTTTTA--TTATTT-TATTATTA
* **
6750362 TTATTATTAACCTACTATTATTA
1 TTTTTATT-A--TTTTATTATTA
*
6750385 TTTTTATTAATATAGTATTATT-
1 TTTTTATT-AT-T-TTATTATTA
6750407 TTTTTATATATTGTTATTATTA
1 TTTTTAT-TATT-TTATTATTA
6750429 TT
1 TT
6750431 AGCACGTATA
Statistics
Matches: 70, Mismatches: 10, Indels: 20
0.70 0.10 0.20
Matches are distributed among these distances:
20 8 0.11
21 12 0.17
22 25 0.36
23 24 0.34
24 1 0.01
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTTATTATTTTATTATTA
Found at i:6750403 original size:23 final size:23
Alignment explanation
Indices: 6750354--6750430 Score: 70
Period size: 23 Copynumber: 3.4 Consensus size: 23
6750344 TACCTTTTTA
* * ** *
6750354 TATTACTATTATTATTAACCTAC
1 TATTATTATTTTTATTAATATAG
6750377 TATTATTATTTTTATTAATATAG
1 TATTATTATTTTTATTAATATAG
*
6750400 TATTATT-TTTTTA-T-ATATTG
1 TATTATTATTTTTATTAATATAG
6750420 TTATTATTATT
1 -TATTATTATT
6750431 AGCACGTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
20 5 0.11
21 8 0.17
22 8 0.17
23 25 0.54
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.61
Consensus pattern (23 bp):
TATTATTATTTTTATTAATATAG
Found at i:6750423 original size:18 final size:20
Alignment explanation
Indices: 6750320--6750431 Score: 84
Period size: 20 Copynumber: 5.5 Consensus size: 20
6750310 CGTAATAGTG
* *
6750320 TTTTTATTATTTTATTATTA
1 TTTTTATTAATATATTATTA
** *
6750340 TTTTTACCTTTTTATATTACTA
1 TTTTTA--TTAATATATTATTA
*
6750362 TTATTATTAACCTACTATTATTA
1 TTTTTATTAA--TA-TATTATTA
*
6750385 TTTTTATTAATATAGTATTA
1 TTTTTATTAATATATTATTA
*
6750405 TTTTT-TT-ATATATTGTTA
1 TTTTTATTAATATATTATTA
*
6750423 TTATTATTA
1 TTTTTATTA
6750432 GCACGTATAT
Statistics
Matches: 73, Mismatches: 12, Indels: 14
0.74 0.12 0.14
Matches are distributed among these distances:
18 13 0.18
19 4 0.05
20 20 0.27
21 2 0.03
22 18 0.25
23 16 0.22
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (20 bp):
TTTTTATTAATATATTATTA
Found at i:6750483 original size:59 final size:60
Alignment explanation
Indices: 6750348--6750484 Score: 147
Period size: 59 Copynumber: 2.3 Consensus size: 60
6750338 TATTTTTACC
* *
6750348 TTTTTATATTACTATTATTATTAACCTACTATTATTATTTTTATTAATATAGTATTATTT
1 TTTTTATATTATTATTATTATTAACCTACTATTATTATTATTATTAATATAGTATTATTT
* * * *
6750408 TTTTATATATTGTTATTATTATT-AGC-ACGTA-TATTATTATTATTAATGT-GTCATTGTTAT
1 TTTT-TATATTATTATTATTATTAACCTAC-TATTATTATTATTATTAATATAGT-ATTATT-T
*
6750468 TTTTTATTTTATTATTA
1 TTTTTATATTATTATTA
6750485 CTTTTATTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
58 2 0.03
59 34 0.52
60 13 0.20
61 16 0.25
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (60 bp):
TTTTTATATTATTATTATTATTAACCTACTATTATTATTATTATTAATATAGTATTATTT
Found at i:6754396 original size:9 final size:9
Alignment explanation
Indices: 6754384--6754416 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
6754374 TAGAGTTGAT
*
6754384 TCGATTAAT
1 TCGATTAAC
6754393 TCGATTAAC
1 TCGATTAAC
6754402 TCGATTAAC
1 TCGATTAAC
6754411 TCGATT
1 TCGATT
6754417 CGAATAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (9 bp):
TCGATTAAC
Found at i:6757217 original size:7 final size:7
Alignment explanation
Indices: 6757205--6757238 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
6757195 TGTTTTGTTT
6757205 CAAAAAG
1 CAAAAAG
6757212 CAAAAAG
1 CAAAAAG
6757219 CAAAAAG
1 CAAAAAG
6757226 CAAAAAG
1 CAAAAAG
6757233 CAAAAA
1 CAAAAA
6757239 AAAAAACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.74, C:0.15, G:0.12, T:0.00
Consensus pattern (7 bp):
CAAAAAG
Found at i:6757244 original size:21 final size:21
Alignment explanation
Indices: 6757205--6757244 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6757195 TGTTTTGTTT
**
6757205 CAAAAAGCAAAAAGCAAAAAG
1 CAAAAAGCAAAAAAAAAAAAG
6757226 CAAAAAGCAAAAAAAAAAA
1 CAAAAAGCAAAAAAAAAAA
6757245 CATTCTCTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.12, G:0.10, T:0.00
Consensus pattern (21 bp):
CAAAAAGCAAAAAAAAAAAAG
Found at i:6757795 original size:23 final size:21
Alignment explanation
Indices: 6757751--6757815 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
6757741 GAAAAATATA
*
6757751 CATTTTGTTCTTTTTTGCTGT
1 CATTTTGTTATTTTTTGCTGT
*
6757772 CATTTCTGTTATTTTTTTCTTGT
1 CATTT-TGTTATTTTTTGC-TGT
* * *
6757795 CCCTTTTGTTGTTGTTTGCTG
1 -CATTTTGTTATTTTTTGCTG
6757816 CTGTCTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 5 0.14
22 13 0.37
23 13 0.37
24 4 0.11
ACGTcount: A:0.05, C:0.15, G:0.15, T:0.65
Consensus pattern (21 bp):
CATTTTGTTATTTTTTGCTGT
Found at i:6760276 original size:52 final size:52
Alignment explanation
Indices: 6760127--6760279 Score: 161
Period size: 52 Copynumber: 2.9 Consensus size: 52
6760117 CATATCATAT
*
6760127 CGATGCCATATCCC-AGATATGGTCTTATACGGAATCACATTATCACAACACAC
1 CGATGCCATA-CCCGAGATATGGTCTTATACGGAATCACA-TATCACATCACAC
* * ***
6760180 CGATGCCATA-CCGTAGCTATGGTCTTATACGGAAACACGA-ATCACATTGTAC
1 CGATGCCATACCCG-AGATATGGTCTTATACGGAATCAC-ATATCACATCACAC
* *
6760232 CTATGCCATAGCCCGA-ATATGGTCTTATACGGAATCATATATCACATC
1 CGATGCCATA-CCCGAGATATGGTCTTATACGGAATCACATATCACATC
6760280 TTTTCCGTCA
Statistics
Matches: 83, Mismatches: 11, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
51 3 0.04
52 43 0.52
53 33 0.40
54 4 0.05
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (52 bp):
CGATGCCATACCCGAGATATGGTCTTATACGGAATCACATATCACATCACAC
Found at i:6765365 original size:13 final size:13
Alignment explanation
Indices: 6765347--6765371 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6765337 AAATCGAGTC
6765347 ATAAATAATTATT
1 ATAAATAATTATT
6765360 ATAAATAATTAT
1 ATAAATAATTAT
6765372 GAGTTTAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATAAATAATTATT
Found at i:6765788 original size:36 final size:35
Alignment explanation
Indices: 6765748--6765840 Score: 107
Period size: 36 Copynumber: 2.5 Consensus size: 35
6765738 TATATGTGTG
*
6765748 GAATTGAATTGAATAT-TGACTTGAAAATGGAAAAGT
1 GAATTGAATTGAAT-TGTGA-TTGAAAATGAAAAAGT
*
6765784 GAATTTTGAATTGAATTGTGATTGAAAGTGAAAAAGT
1 GAA--TTGAATTGAATTGTGATTGAAAATGAAAAAGT
*
6765821 GCAATTGAATTGAAATGTGA
1 G-AATTGAATTGAATTGTGA
6765841 ATTTGGAGAC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
36 18 0.36
37 16 0.32
38 16 0.32
ACGTcount: A:0.42, C:0.02, G:0.24, T:0.32
Consensus pattern (35 bp):
GAATTGAATTGAATTGTGATTGAAAATGAAAAAGT
Found at i:6766025 original size:37 final size:38
Alignment explanation
Indices: 6765932--6766026 Score: 93
Period size: 38 Copynumber: 2.4 Consensus size: 38
6765922 GACCTCGAGT
* **
6765932 CGATGAGACACTGGGTGTCACTATTTTACTTCGGATAGATT
1 CGATGAGACACT-GG-GT-ACCATTTTACTTCGGATAGAGC
** * *
6765973 CGATGAGGTATTGGGTACCATTTTACTTCGGCTAG-GC
1 CGATGAGACACTGGGTACCATTTTACTTCGGATAGAGC
6766010 CGATGAGACACTGGGTA
1 CGATGAGACACTGGGTA
6766027 TCACTTTATT
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
37 14 0.32
38 17 0.39
39 2 0.05
40 2 0.05
41 9 0.20
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (38 bp):
CGATGAGACACTGGGTACCATTTTACTTCGGATAGAGC
Found at i:6767965 original size:23 final size:23
Alignment explanation
Indices: 6767938--6767984 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
6767928 AAAATACATG
6767938 TGTAAAAA-TATTATACATATACT
1 TGTAAAAATTA-TATACATATACT
* *
6767961 TGTAATAATTATATACATTTACT
1 TGTAAAAATTATATACATATACT
6767984 T
1 T
6767985 ATTATTTAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.45
Consensus pattern (23 bp):
TGTAAAAATTATATACATATACT
Found at i:6768873 original size:30 final size:28
Alignment explanation
Indices: 6768819--6768879 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
6768809 TAAAAATGTA
6768819 AAATATATATTTAAATTTGTAAATTTGT
1 AAATATATATTTAAATTTGTAAATTTGT
*
6768847 AAATATATATTATGGAATTATG-AAATTTGT
1 AAATATATATT-T-AAATT-TGTAAATTTGT
6768877 AAA
1 AAA
6768880 GAAAATTATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 11 0.38
29 1 0.03
30 15 0.52
31 2 0.07
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (28 bp):
AAATATATATTTAAATTTGTAAATTTGT
Found at i:6768979 original size:20 final size:20
Alignment explanation
Indices: 6768951--6769001 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
6768941 GACAAAAAGT
*
6768951 ATATATGTGAAAAACGTGTG
1 ATATTTGTGAAAAACGTGTG
6768971 ATATTTGTGAAAAACGTGTG
1 ATATTTGTGAAAAACGTGTG
6768991 ATATTTGTGAA
1 ATATTTGTGAA
6769002 TTGTGAAATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.35
Consensus pattern (20 bp):
ATATTTGTGAAAAACGTGTG
Found at i:6781170 original size:265 final size:261
Alignment explanation
Indices: 6780561--6782664 Score: 1652
Period size: 265 Copynumber: 8.0 Consensus size: 261
6780551 ACTAAACACA
* * * * ** **
6780561 GCTAACCGATAACTAAAGCCCCTTAAAAGGCCCCATTGACACCATTCAGGAAGAAGTCAAACACG
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * * * *
6780626 AGCACCTAGTCTATCAAGTTAATTCTTCCATCGCTCAAACCAGTCAATCTCACCGATGTTATCC-
65 AGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCCT
* * *
6780690 ATAT-GGCTA-ATAGTTACATATGCAGAGTCAACACAGTATTTCAC----A---AGCAAAGAAAC
130 ACATGGGCTACA-ACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAAC
* * *
6780746 AGAGGAAACACAATTAATAGTTTACTAAACTCACCAAGA-GATTTAACTCCCCTCCATTGACACA
194 AGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCATTGACACA
*
6780810 CGAC
258 CAAC
* * *
6780814 GCTAACCGATAACTAAAACCCCTTAAAAGGCTCCATTGACACCGTTGAACAAGAAGTCAAATTCA
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * * *
6780879 AGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCAACAATGTTATCCT
65 AGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCCT
*
6780944 ACATGGGCTACAACTTAAATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAACA
130 ACATGGGCTACAACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAACA
* * *
6781009 AAGGAAACACGATTACTAGTTCACAGAACTCACCAAGAGGATTGAACTCTCCTCCAATTGACACA
195 GAGGAAACACAATTACTAGTTCACA-AACTCACCAAGAGGATTGAACTCCCCTCC-ATTGACACA
*
6781074 CAAT
258 CAAC
* * * * * *
6781078 GCTAACTGATATCAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTCAACAATAAGTCAAATTT
1 GCTAACCGATAT-TAAAA-CCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTC
* * * * *
6781143 GAGCATCC-AGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAATCTCATCAAAG-CATC
64 GAGCA-CCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATC
* * * * * * **
6781206 CTATATAAGCAGCTACGAC---CAAATGCAAAGTCAACAGAAAGTATTTCCCAT-TCAGTTAGGG
128 CTACAT--G-GGCTACAACTTACATATGCAGAGTCAAC--AAAGTATTTCACATAT-AGTTAGCA
* *
6781267 AAGAAACAGAGGAAACACAATTAGC-AGTTCACTAAACTCACCGAGAAGATTGAACTCCCCTCCA
187 AAGAAACAGAGGAAACACAATTA-CTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCA
*
6781331 TTAACACACAAC
250 TTGACACACAAC
* * * * * * *
6781343 GCAAAGCC-ATAATAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGAAGTCAAATTTG
1 GCTAA-CCGATATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * * ** *
6781407 AGCACTTAGTCTA-TAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCACCAATGTCATC
65 AGCACCTAGTCTATTAA-GT-TAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATC
6781471 CTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTAGCAAAGA
128 CTACATGGGCTACAACTTACATATGCAGAGTC-A-ACAAAGTATTTCACATATAGTTAGCAAAGA
*
6781536 AAC--A--AAAGA-AA--ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATTGA
191 AACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCC-ATTGA
*
6781594 CACACAGC
254 CACACAAC
* ** * * *
6781602 GCTAACAGATAGTTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAAGAAGTCAAA-TCT
1 GCTAACCGATA-TTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTC-
* * **
6781665 GAGCACCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAA-CATATCC
64 GAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCC
* * *** * * * * * * * **
6781729 CAGACAAGCTACTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATTTAGTTAGTGAAGAA
129 TACATGGGCTACAACTTACATATGCAGAGTCAAC--AAAGTATTTCACATATAGTTAGCAAAGAA
* * *
6781794 ACAGGGGAAACACAATTAAC-AGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCATTG--
192 ACAGAGGAAACACAATT-ACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCCTCCATTGAC
6781856 ACACAAC
255 ACACAAC
* ** *
6781863 ACTAATCC-ATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAAGAAGTCAAATT
1 GCTAA-CCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGT-TCAACAAGAAGTCAAATT
* * * * * * *
6781926 GGAGCACATAGTCTACTAGGTTAATTCTTCCATTGGTCAAACTAGTCAATCACACCAAAATGCCA
63 CGAGCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACC--AATG---
* * * * **
6781991 AATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACACAGTATTTCACACATAACTAGC
123 --TTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGC
* *
6782053 AGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGAACTCCCCTCCA
186 AAAGAAACAGAGGAAACACAATTACTAGTTCA-CAAACTCACCAAGAGGATTGAACTCCCCTCCA
* *
6782118 TTGACACAAAAT
250 TTGACACACAAC
* * * *
6782130 GCTAACCGATAATTAAAACCCCTTAAAAGG-TGCCATGGACACCATTCAAGAATAAGTCAAATTC
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCT-CCATTGACACCGTTCAACAAGAAGTCAAATTC
* * * * *
6782194 AAGCACCTAGTGGTCCTAGTCT-A-CTAAGTTTTTCCTTTGCTCAAACTGGTCAATCACACCAAT
64 GAGCACCTA---GT-CTA-T-TAAGTTAA-TTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAT
* * * * * * *** *
6782257 GGGTTAATCCTATATGGGTTACTACTTACATATACAGAGCCAACACCAAGTGTTTCACACGCAGC
122 --GTT-ATCCTACATGGGCTACAACTTACATATGCAGAGTCAACA--AAGTATTTCACATATAGT
** * * * * * *
6782322 TAGTGAAGAAACAGAGAAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAACTCCCC
182 TAGCAAAGAAACAGAGGAAACACAATTACTAGTTCAC-AAACTCACCAAGAGGATTGAACTCCCC
* **
6782387 TCCATTGACACATAGT
246 TCCATTGACACACAAC
** * * * * * * *
6782403 GCTAACAAATAATTAAAACCTCTT-ATAGGCGCCATTGACACCATTCAAGAAGAAGTCAATTTCA
1 GCTAACCGAT-ATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCG
* * *** ** * * *
6782467 AGCACCAGCTGGTCCTAGTCTTTTAAGGTT-TTGATTTGCTCAAACAAGTCGATCACACCAATGG
65 AGCA-C--CTAGT-CTATTAAGTTAA--TTCTTCCTTTGCTCAAACTAGTCAATCTCACCAAT--
* * * ** * * *
6782531 GTTAATCTTAAATGAAG-TATTACTTACACATGCAGAGTCCATACAAAATATTTCACATATAGCT
122 GTT-ATCCTACATG-GGCTACAACTTACATATGCAGAGT-CA-ACAAAGTATTTCACATATAGTT
* * *
6782595 AGCTAAA-AAACAGAGGAAACACAATCAATAGTTCACTATAACTCACCAAGAGGATTGAACTCTC
183 AGC-AAAGAAACAGAGGAAACACAATTACTAGTTCAC-A-AACTCACCAAGAGGATTGAACTCCC
6782659 CTCCAT
245 CTCCAT
6782665 AGCCATCAAG
Statistics
Matches: 1502, Mismatches: 250, Indels: 178
0.78 0.13 0.09
Matches are distributed among these distances:
253 112 0.07
254 3 0.00
255 37 0.02
256 2 0.00
257 53 0.04
258 69 0.05
259 71 0.05
260 10 0.01
261 27 0.02
262 141 0.09
263 74 0.05
264 120 0.08
265 229 0.15
266 83 0.06
267 93 0.06
268 10 0.01
269 3 0.00
270 13 0.01
271 28 0.02
272 178 0.12
273 141 0.09
274 3 0.00
275 2 0.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (261 bp):
GCTAACCGATATTAAAACCCCTTAAAAGGCTCCATTGACACCGTTCAACAAGAAGTCAAATTCGA
GCACCTAGTCTATTAAGTTAATTCTTCCTTTGCTCAAACTAGTCAATCTCACCAATGTTATCCTA
CATGGGCTACAACTTACATATGCAGAGTCAACAAAGTATTTCACATATAGTTAGCAAAGAAACAG
AGGAAACACAATTACTAGTTCACAAACTCACCAAGAGGATTGAACTCCCCTCCATTGACACACAA
C
Found at i:6781776 original size:522 final size:522
Alignment explanation
Indices: 6780739--6782157 Score: 1740
Period size: 522 Copynumber: 2.7 Consensus size: 522
6780729 TTCACAAGCA
* * *
6780739 AAGAAACAGAGGAAACACAATTAATAGTTTACTAAACTCACCAAG-AGATTTAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * * *
6780803 TGACACACGACGCTAACCGATAACTAAAACCCCTTAAAAGGCTCCATTGACACCGTTGAACAAGA
66 T-ACACACAACGCTAACC-ATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* * * * * *
6780868 AGTCAAATTCAAGCACCTAGTCTCTAAAGTCAATTCTTCCTTTGCTCAAACTAGTCAATCTCAAC
129 AGTCAAATTCGAGCACATAGTCTATAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACC
*
6780933 AATGTTATCCTACATGGGCTACAACTTAAATATGCAGAGTC-A-ACAAAGTATTTCACATATAGT
194 AATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGT
* *
6780996 TAGCAAAGAAACAAAGGAAACACGATTACTAGTTCACAGAACTCACCAAGAGGATTGAACTCTCC
259 TAGCAAAGAAACAAA--AAACA--A-TACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCC
* * ** * *
6781061 TCCAATTGACACACAATGCTAACTGATATCAAAAACCCCCTTAAAAGGCTCCTTTGACACTGTTC
319 TCCAATTGACACACAATGCTAACAGATAT-TAAAA-CCCCTTAAAAACCTCCATTGACACTGCTC
* * * * *
6781126 AACAATAAGTCAAATTTGAGCATCCAGTCTATTGAGTTAATTCTTCCTTTTCTCAAACTAGTCAA
382 AACAAGAAGTCAAATCTGAGCATCCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAA
* * * *
6781191 TCTCATCAAAGCATCCTATATAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGTATTTCCCA
447 TCTCATCAAAGCATCCCAGACAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCA
6781256 TTCAGTTAGGG
512 TTCAGTTAGGG
* *
6781267 AAGAAACAGAGGAAACACAATTAGCAGTTCACTAAACTCACCGAGAAGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * *
6781332 TAACACACAACGCAAAGCCATAA-TAAAACCCCTTAAAAAGCCCCATTGACACCGCTCAACATGA
66 T-ACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGA
* * * **
6781396 AGTCAAATTTGAGCACTTAGTCTATAAGGTCAAATTCTTCCCTCACTCAAACTAGTCAATCTCAC
129 AGTCAAATTCGAGCACATAGTCTATAAGGTC-AATTCTTCCATTGCTCAAACTAGTCAATCTCAC
*
6781461 CAATGTCATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
193 CAATGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAG
*
6781526 TTAGCAAAGAAACAAAAGA-AA-ACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCA
258 TTAGCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCA
** *
6781589 ATTGACACACAGCGCTAACAGATAGTTAAAA-CCCTTAAAAACCTCCATTGAGACTGCTCAACAA
323 ATTGACACACAATGCTAACAGATA-TTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAA
6781653 GAAGTCAAATCTGAGCA-CCTAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTC
387 GAAGTCAAATCTGAGCATCC-AGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTC
* ** ** *
6781717 ATCAACA-TATCCCAGACAAGCTA-CTACTTCCGTATGCATAGTCAACAGAAAGAATTTCCCATT
451 ATCAA-AGCATCCCAGACAAGC-AGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCATT
* *
6781780 TAGTTAGTG
514 CAGTTAGGG
* * *
6781789 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
* * * * **
6781854 T-GACACAACACTAATCCATAATTAAAACCCCTTAAAAATCTCCATTGACACTTCTCAACAAGAA
66 TACACACAACGCTAA-CCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAA
* * * *
6781918 GTCAAATTGGAGCACATAGTCTACT-AGGTTAATTCTTCCATTGGTCAAACTAGTCAATCACACC
130 GTCAAATTCGAGCACATAGTCTA-TAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACC
* *
6781982 AAAATGCCAAATTATCCTACAT-GG--ACTACTTACACATGCAGAGTCAACAC--AGTATTTCAC
194 --AATG-----TTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCAC
* ** * * *
6782042 ACATAACTAGCAGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGA
252 ATATAGTTAGCAAAGAAACA-A--AAA-ACAA-TACTAGTTCACAAAACTCACCAAGAGGATTGA
* *
6782107 ACTCCCCTCC-ATTGACACAAAATGCTAACCGATAATTAAAACCCCTTAAAA
312 ACTCCCCTCCAATTGACACACAATGCTAACAGAT-ATTAAAACCCCTTAAAA
6782158 GGTGCCATGG
Statistics
Matches: 775, Mismatches: 89, Indels: 53
0.85 0.10 0.06
Matches are distributed among these distances:
520 45 0.06
521 64 0.08
522 232 0.30
523 3 0.00
524 89 0.11
525 3 0.00
526 4 0.01
527 12 0.02
528 129 0.17
529 155 0.20
530 3 0.00
531 36 0.05
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (522 bp):
AAGAAACAGAGGAAACACAATTAACAGTTCACTAAACTCACCAAGAAGATTGAACTCCCCTCCAT
TACACACAACGCTAACCATAACTAAAACCCCTTAAAAAGCTCCATTGACACCGCTCAACAAGAAG
TCAAATTCGAGCACATAGTCTATAAGGTCAATTCTTCCATTGCTCAAACTAGTCAATCTCACCAA
TGTTATCCTACATGGGCTACAACTTACATATGCAGAGTCAACACAAAGTATTTCACATATAGTTA
GCAAAGAAACAAAAAACAATACTAGTTCACAAAACTCACCAAGAGGATTGAACTCCCCTCCAATT
GACACACAATGCTAACAGATATTAAAACCCCTTAAAAACCTCCATTGACACTGCTCAACAAGAAG
TCAAATCTGAGCATCCAGTCTATTAAGTTAAGTCTTCCTTTGCTCAAACTAGTCAATCTCATCAA
AGCATCCCAGACAAGCAGCTACGACCAAATGCAAAGTCAACAGAAAGAATTTCCCATTCAGTTAG
GG
Found at i:6782417 original size:273 final size:272
Alignment explanation
Indices: 6781789--6782664 Score: 821
Period size: 272 Copynumber: 3.2 Consensus size: 272
6781779 TTAGTTAGTG
* * * *
6781789 AAGAAACAGGGGAAACACAATTAACAGTTCACTGAACTCACCAAGATGATTGAACTCCCCTCCAT
1 AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
* * ** * * * *
6781854 TGACACAACA--CTAATC-CATAATTAAAACCCCTTAAAAATCTCCATTGACA-CTTCTCAACAA
66 TGACACAAAATGCTAA-CAAATAATTAAAACCCCTT-AAAGGCGCCATGGACACCAT-TCAAGAA
** * * * *
6781915 GAAGTCAAATTGGAGCA-CA--TAGT-CTA--CTAGGTTAA--TTCTTCCA-TTGGTCAAACTAG
128 GAAGTCAAATTCAAGCACCAGCTGGTCCTAGTCTA--CTAAGGTT-TT-CATTTGCTCAAACAAG
** * *
6781971 TCAATCACACCAAAATGCCAAATT-ATCCTACATG--G-ACTACTTACACATGCAGAGT-CA-AC
189 TCAATCACACC--AATG---GGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATAC
* * * *
6782030 ACAGTATTTCACACATAACTAGC-
249 AAAATATTTCACACACAGCTAGCT
*
6782053 AGAGAAACAGAGGAAACACAATTAATAGTTCACCAAACTCACCAAGAGGATTGAACTCCCCTCCA
1 A-AGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
** * *
6782118 TTGACACAAAATGCTAACCGATAATTAAAACCCCTTAAAAGGTGCCATGGACACCATTCAAGAAT
65 TTGACACAAAATGCTAACAAATAATTAAAACCCCTT-AAAGGCGCCATGGACACCATTCAAGAAG
* * **
6782183 AAGTCAAATTCAAGCACCTAG-TGGTCCTAGTCTACTAAGTTTTTCCTTTGCTCAAACTGGTCAA
129 AAGTCAAATTCAAGCACC-AGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAA
* * * * *
6782247 TCACACCAATGGGTTAATCCTATATG-GGTTACTACTTACATATACAGAG-CCA-ACACCAAGTG
193 TCACACCAATGGGTTAATCCTAAATGAAG-TACTACTTACACATACAGAGTCCATACA--AAATA
*
6782309 TTTCACACGCAGCTAG-T
255 TTTCACACACAGCTAGCT
* * * * *
6782326 GAAGAAACAGAGAAAACACGATTAATAATTCACTAAACTCGCCAAGAGGACTGAACTCCCCTCCA
1 -AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCA
* * * * *
6782391 TTGACACATAGTGCTAACAAATAATTAAAACCTCTTATAGGCGCCATTGACACCATTCAAGAAGA
65 TTGACACAAAATGCTAACAAATAATTAAAACCCCTTAAAGGCGCCATGGACACCATTCAAGAAGA
* ** * *
6782456 AGTCAATTTCAAGCACCAGCTGGTCCTAGTCTTTTAAGGTTTTGATTTGCTCAAACAAGTCGATC
130 AGTCAAATTCAAGCACCAGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAATC
* * *
6782521 ACACCAATGGGTTAATCTTAAATGAAGTATTACTTACACATGCAGAGTCCATACAAAATATTTCA
195 ACACCAATGGGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATACAAAATATTTCA
* *
6782586 CATATAGCTAGCT
260 CACACAGCTAGCT
* * *
6782599 AAAAAACAGAGGAAACACAATCAATAGTTCACTATAACTCACCAAGAGGATTGAACTCTCCTCCA
1 AAGAAACAGAGGAAACACAATTAATAGTTCACTA-AACTCACCAAGAGGATTGAACTCCCCTCCA
6782664 T
65 T
6782665 AGCCATCAAG
Statistics
Matches: 508, Mismatches: 75, Indels: 49
0.80 0.12 0.08
Matches are distributed among these distances:
264 1 0.00
265 68 0.13
266 1 0.00
267 54 0.11
268 12 0.02
269 2 0.00
270 7 0.01
271 31 0.06
272 186 0.37
273 142 0.28
274 4 0.01
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.24
Consensus pattern (272 bp):
AAGAAACAGAGGAAACACAATTAATAGTTCACTAAACTCACCAAGAGGATTGAACTCCCCTCCAT
TGACACAAAATGCTAACAAATAATTAAAACCCCTTAAAGGCGCCATGGACACCATTCAAGAAGAA
GTCAAATTCAAGCACCAGCTGGTCCTAGTCTACTAAGGTTTTCATTTGCTCAAACAAGTCAATCA
CACCAATGGGTTAATCCTAAATGAAGTACTACTTACACATACAGAGTCCATACAAAATATTTCAC
ACACAGCTAGCT
Found at i:6784249 original size:28 final size:27
Alignment explanation
Indices: 6784218--6784287 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 27
6784208 ATTAAAAATC
6784218 AAAAATATAAAA-AAATATTAAATATTAA
1 AAAAATATAAAATAAATA-TAAA-ATTAA
* * *
6784246 AAAAATGCTAAAATAAATATAAACTTAT
1 AAAAAT-ATAAAATAAATATAAAATTAA
6784274 AAAAATATAAAATA
1 AAAAATATAAAATA
6784288 TTATAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 7 0.19
28 15 0.42
29 9 0.25
30 5 0.14
ACGTcount: A:0.69, C:0.03, G:0.01, T:0.27
Consensus pattern (27 bp):
AAAAATATAAAATAAATATAAAATTAA
Found at i:6784257 original size:18 final size:17
Alignment explanation
Indices: 6784220--6784262 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
6784210 TAAAAATCAA
*
6784220 AAATATAAAAAAATATT
1 AAATATAAAAAAATACT
*
6784237 AAATATTAAAAAAATGCT
1 AAATA-TAAAAAAATACT
6784255 AAA-ATAAA
1 AAATATAAA
6784263 TATAAACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 4 0.17
17 6 0.26
18 13 0.57
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (17 bp):
AAATATAAAAAAATACT
Found at i:6784383 original size:17 final size:17
Alignment explanation
Indices: 6784353--6784386 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6784343 ATTTTTACCC
**
6784353 TTTAAATTTTTAAAAAT
1 TTTAAATTAATAAAAAT
6784370 TTTAAATTAATAAAAAT
1 TTTAAATTAATAAAAAT
6784387 AAAATTATAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTTAAATTAATAAAAAT
Found at i:6784593 original size:22 final size:22
Alignment explanation
Indices: 6784562--6784604 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
6784552 TATGCTTAAA
* *
6784562 ATATTTAAAATTTTATAAAAAC
1 ATATTAAAAATTCTATAAAAAC
6784584 ATATTAAAAATTCTATAAAAA
1 ATATTAAAAATTCTATAAAAA
6784605 ATAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (22 bp):
ATATTAAAAATTCTATAAAAAC
Found at i:6785063 original size:10 final size:10
Alignment explanation
Indices: 6785062--6785098 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
6785052 TTTATGATTT
6785062 TTTTTTATAA
1 TTTTTTATAA
6785072 TTTTTTATAA
1 TTTTTTATAA
6785082 --TTTT-TAA
1 TTTTTTATAA
6785089 TTTTTTATAA
1 TTTTTTATAA
6785099 AAATTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
7 3 0.12
8 4 0.17
9 4 0.17
10 13 0.54
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:6785091 original size:17 final size:18
Alignment explanation
Indices: 6785064--6785233 Score: 75
Period size: 19 Copynumber: 9.3 Consensus size: 18
6785054 TATGATTTTT
6785064 TTTTATAATTTTTTATAA
1 TTTTATAATTTTTTATAA
6785082 TTTT-TAATTTTTTATAAAA
1 TTTTATAATTTTTTAT--AA
* *
6785101 ATTTA-AATATTTTAAATAA
1 TTTTATAAT-TTTT-TATAA
* **
6785120 ATTT-T-ATTTTTTATTT
1 TTTTATAATTTTTTATAA
* * *
6785136 TTTTGTAATTTATAATAA
1 TTTTATAATTTTTTATAA
** *
6785154 -TTTATTTGTTTTTTGT-A
1 TTTTA-TAATTTTTTATAA
*
6785171 TTTTATAA-TATTTATAA
1 TTTTATAATTTTTTATAA
* * *
6785188 GTGTTTATATTTTTTTCTTAT
1 -T-TTTATAATTTTTT-ATAA
6785209 TTTTATAATTTTTTAATAA
1 TTTTATAATTTTTT-ATAA
6785228 TTTTAT
1 TTTTAT
6785234 GATAAAATAT
Statistics
Matches: 109, Mismatches: 28, Indels: 29
0.66 0.17 0.17
Matches are distributed among these distances:
16 10 0.09
17 22 0.20
18 24 0.22
19 40 0.37
20 9 0.08
21 4 0.04
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTATAATTTTTTATAA
Found at i:6785184 original size:37 final size:38
Alignment explanation
Indices: 6785143--6785230 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 38
6785133 TTTTTTTGTA
6785143 ATTTATAATAATTTAT-TTGTTTTT-TGTA-TTTTATAAT
1 ATTTATAATAATTTATATT-TTTTTCT-TATTTTTATAAT
*
6785180 ATTTATAAGT-GTTTATATTTTTTTCTTATTTTTATAAT
1 ATTTATAA-TAATTTATATTTTTTTCTTATTTTTATAAT
*
6785218 -TTTTTAATAATTT
1 ATTTATAATAATTT
6785231 TATGATAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
36 1 0.02
37 29 0.67
38 13 0.30
ACGTcount: A:0.28, C:0.01, G:0.05, T:0.66
Consensus pattern (38 bp):
ATTTATAATAATTTATATTTTTTTCTTATTTTTATAAT
Found at i:6790404 original size:32 final size:32
Alignment explanation
Indices: 6790368--6790433 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
6790358 TTAATTAACC
*
6790368 AATGAATTATCAAATTAAATTAATCAATTTAT
1 AATGAATTATCAAATTAAAGTAATCAATTTAT
* * * *
6790400 AATGAGTTATTAAGTTCAAGTAATCAATTTAT
1 AATGAATTATCAAATTAAAGTAATCAATTTAT
6790432 AA
1 AA
6790434 GTTTATGATG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (32 bp):
AATGAATTATCAAATTAAAGTAATCAATTTAT
Found at i:6790975 original size:30 final size:30
Alignment explanation
Indices: 6790939--6791002 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
6790929 AATTAGTGGT
*
6790939 GATTCTTTATTGATGAAAAGGATATGATAA
1 GATTCTTTATTGATGAAAAGGATATGACAA
6790969 GATTCTTTATTGATGAAAAGGATATGACAA
1 GATTCTTTATTGATGAAAAGGATATGACAA
6790999 GATT
1 GATT
6791003 GGAAAAGGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.39, C:0.05, G:0.20, T:0.36
Consensus pattern (30 bp):
GATTCTTTATTGATGAAAAGGATATGACAA
Found at i:6797944 original size:254 final size:249
Alignment explanation
Indices: 6797594--6798304 Score: 861
Period size: 254 Copynumber: 2.8 Consensus size: 249
6797584 AACCATGTTT
*
6797594 AATTGGAATAAACAATTAATTAAAGAAATCTCGAGTAGCAGTGAAAAAAAACTTCAAAAGCAACG
1 AATTGGAATAAACAATTAA-TAAAGAAATCTCGATTAGCAGT---AAAAAACTTCAAAAGCAACG
* *
6797659 GAGAGAAACCAATAAAATGCAATACAATCTCGTCAACTAAGTATTACACTGTTTTTGACTGAACT
62 GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGA-TGAACT
* *
6797724 ATGTTCAACTTGAATAAACAGCTAATTAAAGAAATCTTGATTAGCAGTGAACAAAAAGAATCAAA
126 ATGTTCAA-TTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAA-AAAAAAAATCAAA
* * * *
6797789 AGCAAAATGCAAT-TAATCACATCTGACTAAGTATTACACTGTTTTCTGTTGAACTAAGGTA
189 AGCAAAATGCAATAAAATCACATC-GACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
* *
6797850 AATTGGAATTAACAATTAACTGAAGAAATCTCGATTAGCAGTAAAAGAACTTCAAAAGCAACGGA
1 AATTGGAATAAACAATTAA-TAAAGAAATCTCGATTAGCAGTAAAA-AACTTCAAAAGCAACGGA
*
6797915 GAGAAACCAGTAAAATGCAATACAATCTCGTCGATTAAGTATTACACTGTTTTTGGATGAACTAT
64 GAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTT-GATGAACTAT
*
6797980 GTTCAATTTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAAAAAAAAACCAAAAGC
128 GTTCAA-TTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAAAAAAAAATCAAAAGC
* * *
6798045 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCTGATGAAATAAGTTC
192 AAAATGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
* * * * *
6798103 AATTGGAATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATT
1 AATTGGAATAAACAATTAAT-AAAGAAATC-TCGATTAGCAGTAAAAAAC-TTCAAAAGC-AA--
* * * * * * * ** *
6798168 AGAAAAAAAAAAACAGTAAAATACAATACAATCACAACGACTAAGTATTACACTGTTATCTGATG
60 CG--GAGAGAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTT-TTTGATG
* * * * * *
6798233 GACTAAGTTCAATTGGAATAAACAACTCATCAAAGAAATCTTGGATTAGAAGTG--AAAAACAAT
122 AACTATGTTCAATT-GAATAAACAACTAATTAAAGAAATCTT-GATTAGCAGTGAAAAAAAAAAT
6798296 CAAAAGCAA
185 CAAAAGCAA
6798305 TTAGAAAAAG
Statistics
Matches: 398, Mismatches: 43, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
252 1 0.00
253 87 0.22
254 154 0.39
255 4 0.01
256 38 0.10
257 1 0.00
258 18 0.05
259 83 0.21
260 12 0.03
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.25
Consensus pattern (249 bp):
AATTGGAATAAACAATTAATAAAGAAATCTCGATTAGCAGTAAAAAACTTCAAAAGCAACGGAGA
GAAACCAGTAAAATGCAATACAATCTCGTCGACTAAGTATTACACTGTTTTTGATGAACTATGTT
CAATTGAATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAAAAAAAAATCAAAAGCAAAA
TGCAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAAATAAGGTA
Found at i:6798151 original size:119 final size:118
Alignment explanation
Indices: 6797926--6798165 Score: 331
Period size: 119 Copynumber: 2.0 Consensus size: 118
6797916 AGAAACCAGT
* * * * * * * *
6797926 AAAATGCAATACAATCTCGTCGATTAAGTATTACACTGTTTTTGGATGAACTATGTTCAATTTGA
1 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTTCTGGATGAAATAAGTTCAATTGGA
* *
6797991 ATAAACAACTAATTAAAGAAATCTTGATTAGCAGTGAAAAAAAAAACCAAAAGC
66 ATAAACAACTAATCAAAGAAATCTTGATTAGAAGTG-AAAAAAAAACCAAAAGC
6798045 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCT-GATGAAATAAGTTCAATTGG
1 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTT-TCTGGATGAAATAAGTTCAATTGG
* *
6798109 AATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTG-AAAAACAATCAAAAGC
65 AATAAACAACTAATCAAAGAAATCTT-GATTAGAAGTGAAAAAAAAACCAAAAGC
6798163 AAA
1 AAA
6798166 TTAGAAAAAA
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
118 17 0.16
119 78 0.73
120 12 0.11
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (118 bp):
AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTTCTGGATGAAATAAGTTCAATTGGA
ATAAACAACTAATCAAAGAAATCTTGATTAGAAGTGAAAAAAAAACCAAAAGC
Found at i:6798195 original size:140 final size:139
Alignment explanation
Indices: 6798045--6798475 Score: 632
Period size: 139 Copynumber: 3.1 Consensus size: 139
6798035 AACCAAAAGC
* * *
6798045 AAAATGCAATAAAATCACATCGAGTAAGTATTACACTGTTATCTGATGAAATAAGTTCAATTGGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
6798110 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAAATTAGAAAAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGC-AATTAGAAAAA
6798175 AAAAAACAGT
130 AAAAAACAGT
* * *
6798185 AAAATACAATACAATCACAACGACTAAGTATTACACTGTTATCTGATGGACTAAGTTCAATTGGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
* *
6798250 ATAAACAACTCATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAATTAGAAAAAG
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAATTAGAAAAAA
6798315 AAAAACAGT
131 AAAAACAGT
* *
6798324 AAAATACAATACAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTCGA
1 AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
* * * * * * * * * *
6798389 ATAAACAATTAATTAAACAAATCTT-GAGTAGCAGTTTAAAAAAAATTAAAAGCAACT-GAGAAA
66 ATAAACAACTAATCAAAGAAATCTTGGATTAGAAG-TGAAAAACAATCAAAAGCAATTAGAAAAA
*
6798452 ACAAAACAGT
130 AAAAAACAGT
*
6798462 AGAATACAATAAAA
1 AAAATACAATAAAA
6798476 ACTCGTCAAC
Statistics
Matches: 264, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
138 32 0.12
139 121 0.46
140 111 0.42
ACGTcount: A:0.51, C:0.13, G:0.13, T:0.23
Consensus pattern (139 bp):
AAAATACAATAAAATCACATCGACTAAGTATTACACTGTTATCTGATGAACTAAGTTCAATTGGA
ATAAACAACTAATCAAAGAAATCTTGGATTAGAAGTGAAAAACAATCAAAAGCAATTAGAAAAAA
AAAAACAGT
Found at i:6799130 original size:25 final size:25
Alignment explanation
Indices: 6799089--6799143 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
6799079 GCTCGGTTCC
* *
6799089 ATTTTTTATTTCCATTTTTATA-TT
1 ATTTTTTATTTCAATTTTTAAATTT
*
6799113 ATTTTTTATTTAGAATTTTTAAATTT
1 ATTTTTTATTT-CAATTTTTAAATTT
6799139 ATTTT
1 ATTTT
6799144 AACAAAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 11 0.42
25 8 0.31
26 7 0.27
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (25 bp):
ATTTTTTATTTCAATTTTTAAATTT
Found at i:6801014 original size:3 final size:3
Alignment explanation
Indices: 6801008--6801042 Score: 52
Period size: 3 Copynumber: 11.0 Consensus size: 3
6800998 TATATAAGTA
6801008 TAT TAT TAAGT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT
6801043 AAAAACAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 26 0.87
4 2 0.07
5 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:6801024 original size:11 final size:11
Alignment explanation
Indices: 6800994--6801035 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 11
6800984 GTATATTTAC
6800994 TTATTATATAAG
1 TTATTAT-TAAG
6801006 TATATTATTAAG
1 T-TATTATTAAG
6801018 TTATTATT-A-
1 TTATTATTAAG
6801027 TTATTATTA
1 TTATTATTA
6801036 TTATTATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.29
10 1 0.04
11 7 0.25
12 6 0.21
13 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:6801107 original size:17 final size:15
Alignment explanation
Indices: 6801061--6801113 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 15
6801051 AACAAAGTAA
*
6801061 AAAGAAAAAGA-ATAG
1 AAAGAAACAGAGA-AG
6801076 AAAGAAACAGAGAAG
1 AAAGAAACAGAGAAG
*
6801091 AAACGAAACAAGGGAAG
1 AAA-GAAAC-AGAGAAG
6801108 AAAGAA
1 AAAGAA
6801114 GGAGAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
15 15 0.45
16 9 0.27
17 9 0.27
ACGTcount: A:0.68, C:0.06, G:0.25, T:0.02
Consensus pattern (15 bp):
AAAGAAACAGAGAAG
Found at i:6801970 original size:18 final size:18
Alignment explanation
Indices: 6801926--6801972 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
6801916 GACTGTCTGC
** *
6801926 TACTAAATAATTGACTGT
1 TACTAAATAAACGACTGA
6801944 TAC-AGAATAAACGACTGA
1 TACTA-AATAAACGACTGA
6801962 TACTAAATAAA
1 TACTAAATAAA
6801973 TGAATATTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 1 0.04
18 22 0.92
19 1 0.04
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.28
Consensus pattern (18 bp):
TACTAAATAAACGACTGA
Found at i:6803815 original size:40 final size:40
Alignment explanation
Indices: 6803775--6803902 Score: 120
Period size: 41 Copynumber: 3.2 Consensus size: 40
6803765 TGGCATCCAG
*
6803775 TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAG
1 TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAA
* * * ** *
6803815 TGTCTCATCTGCTAAACCGAAGT-A-AA-TTGACACCCAA
1 TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAA
* *
6803852 TGCCTCATCGAATTAATCTGAAA-TAATAATTTGACACCCAA
1 TGCCTCATCGGA-TAAT-TCAAAGTAATAATTTGACACCCAA
*
6803893 TGTCTCATCG
1 TGCCTCATCG
6803903 ATTTAAGTTC
Statistics
Matches: 67, Mismatches: 16, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
37 18 0.27
38 6 0.09
39 4 0.06
40 19 0.28
41 20 0.30
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (40 bp):
TGCCTCATCGGATAATTCAAAGTAATAATTTGACACCCAA
Found at i:6805576 original size:9 final size:9
Alignment explanation
Indices: 6805551--6805590 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
6805541 GCTTATTATG
6805551 TTAATTAAGT
1 TTAATTAA-T
*
6805561 TTGATTAAT
1 TTAATTAAT
6805570 TTAATTAAT
1 TTAATTAAT
6805579 TTAATTAAT
1 TTAATTAAT
6805588 TTA
1 TTA
6805591 GGTTAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (9 bp):
TTAATTAAT
Found at i:6813025 original size:20 final size:21
Alignment explanation
Indices: 6812985--6813034 Score: 75
Period size: 20 Copynumber: 2.4 Consensus size: 21
6812975 TATCTAGAAG
* *
6812985 TGAAATCAAGTTGAGTTGAGT
1 TGAATTCAAGTTGAGTCGAGT
6813006 TGAATTCAAG-TGAGTCGAGT
1 TGAATTCAAGTTGAGTCGAGT
6813026 TGAATTCAA
1 TGAATTCAA
6813035 ATATTTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.32
Consensus pattern (21 bp):
TGAATTCAAGTTGAGTCGAGT
Found at i:6813766 original size:24 final size:24
Alignment explanation
Indices: 6813739--6813790 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6813729 TTAGTAAGTC
*
6813739 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
6813763 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
6813787 AAAT
1 AAAT
6813791 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:6815734 original size:24 final size:24
Alignment explanation
Indices: 6815707--6815758 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6815697 TTAGTAAGTC
*
6815707 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
6815731 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
6815755 AAAT
1 AAAT
6815759 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:6816960 original size:25 final size:25
Alignment explanation
Indices: 6816932--6816981 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
6816922 ATAATTACTG
6816932 AAGGTTGTGTATGGAGGCTTTTCTA
1 AAGGTTGTGTATGGAGGCTTTTCTA
6816957 AAGGTTGTGTATGGAGGCTTTTCTA
1 AAGGTTGTGTATGGAGGCTTTTCTA
6816982 CAGGGGCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.08, G:0.32, T:0.40
Consensus pattern (25 bp):
AAGGTTGTGTATGGAGGCTTTTCTA
Found at i:6827651 original size:26 final size:27
Alignment explanation
Indices: 6827588--6827651 Score: 67
Period size: 31 Copynumber: 2.3 Consensus size: 27
6827578 ATTTGGTCGT
**
6827588 TTCACTATTTTAAAGTTTTTATTTAAG
1 TTCACTATTCAAAAGTTTTTATTTAAG
6827615 TTACTGGACTATTCAAAAGTTTTTATTTAAG
1 TT-C---ACTATTCAAAAGTTTTTATTTAAG
6827646 -TCACTA
1 TTCACTA
6827652 GGCTATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
26 4 0.13
27 2 0.06
28 1 0.03
29 1 0.03
30 1 0.03
31 22 0.71
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.48
Consensus pattern (27 bp):
TTCACTATTCAAAAGTTTTTATTTAAG
Found at i:6827669 original size:31 final size:31
Alignment explanation
Indices: 6827599--6827661 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
6827589 TCACTATTTT
*
6827599 AAAGTTTTTATTTAAGTTACTGGACTATTCA
1 AAAGTTTTTATTTAAGTCACTGGACTATTCA
6827630 AAAGTTTTTATTTAAGTCACTAGG-CTATTCA
1 AAAGTTTTTATTTAAGTCACT-GGACTATTCA
6827661 A
1 A
6827662 TTTTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (31 bp):
AAAGTTTTTATTTAAGTCACTGGACTATTCA
Found at i:6837543 original size:44 final size:44
Alignment explanation
Indices: 6837494--6837580 Score: 165
Period size: 44 Copynumber: 2.0 Consensus size: 44
6837484 GTTTCGTCAT
6837494 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAAA
1 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAAA
*
6837538 AAAAACATAAAAATAAATGACTAAATTATACTCAATGACTAAA
1 AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAA
6837581 TATTAAATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (44 bp):
AAAAACATAAAAATAAAGGACTAAATTATACTCAATGACTAAAA
Found at i:6842059 original size:20 final size:20
Alignment explanation
Indices: 6842020--6842059 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6842010 AAAAGTTTGT
* *
6842020 TTTTATAAAAATACATAAAA
1 TTTTATAAAAAAACACAAAA
*
6842040 TTTTATAAAAAAATACAAAA
1 TTTTATAAAAAAACACAAAA
6842060 GAATACCCGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TTTTATAAAAAAACACAAAA
Found at i:6842764 original size:32 final size:33
Alignment explanation
Indices: 6842723--6842784 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
6842713 CACTAAATCA
*
6842723 TAAATAAAATTTCGTTTT-ATTTATTAAATTACT
1 TAAATAAAATTTC-TTTTAAGTTATTAAATTACT
6842756 TAAA-AAAATTTCTTTTAAGTTATTAAATT
1 TAAATAAAATTTCTTTTAAGTTATTAAATT
6842785 GTTAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.15
32 19 0.70
33 4 0.15
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (33 bp):
TAAATAAAATTTCTTTTAAGTTATTAAATTACT
Found at i:6843881 original size:3 final size:3
Alignment explanation
Indices: 6843873--6843900 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6843863 TTGGACTATC
6843873 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
6843901 TACCGTTTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6846247 original size:6 final size:6
Alignment explanation
Indices: 6846236--6846261 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
6846226 ATTTAACTCA
6846236 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
6846262 TAAAAGATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:6850719 original size:88 final size:88
Alignment explanation
Indices: 6850621--6850794 Score: 239
Period size: 88 Copynumber: 2.0 Consensus size: 88
6850611 TATGAGCTGT
* *
6850621 AAAAAGAAATGGAACCTTTTAAGACCCACCATAGCAGGTAGGTTGATATTTTTTCTTTTATGTT-
1 AAAAAGAAATGGAACCTTTTAAGACCCACCATAGAAGATAGGTTGATA-TTTTTC---TATGTTA
*
6850685 AGAGCATGAAATGAA-G-GTGACTACC
62 AAAGCATGAAATGAATGTGTGACTACC
* *
6850710 AAAAA-AAATGGAATCTTTTAAGACCCACCATAGAATATAGGTTGATATTTTTCTATGTTAAAAG
1 AAAAAGAAATGGAACCTTTTAAGACCCACCATAGAAGATAGGTTGATATTTTTCTATGTTAAAAG
6850774 CATGAAATGAATGTGTGACTA
66 CATGAAATGAATGTGTGACTA
6850795 GGTGAGGCTT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
84 6 0.08
85 14 0.18
86 1 0.01
87 13 0.17
88 38 0.49
89 5 0.06
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (88 bp):
AAAAAGAAATGGAACCTTTTAAGACCCACCATAGAAGATAGGTTGATATTTTTCTATGTTAAAAG
CATGAAATGAATGTGTGACTACC
Found at i:6853238 original size:64 final size:65
Alignment explanation
Indices: 6853118--6853248 Score: 176
Period size: 64 Copynumber: 2.0 Consensus size: 65
6853108 CGGAAAATAT
* * *
6853118 TTTAATAATTTCTTAAAGAAAAGGATGAAATAAAGGACGTATAATTTTGCTAATTAGATTCAAAG
1 TTTAATAATTTCTAAAAGAAAAGGA-GAAATAAACGACGTATAATTTTACTAATTAGATTCAAAG
6853183 G
65 G
* * *
6853184 TTTAATAATTTCCTAAAAGAAAA-GA-AAGTAAACGAGGTATAATTTTACTGATTAGATTCAAAG
1 TTTAATAATTT-CTAAAAGAAAAGGAGAAATAAACGACGTATAATTTTACTAATTAGATTCAAAG
6853247 G
65 G
6853248 T
1 T
6853249 GATTTTTAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
64 35 0.60
66 13 0.22
67 10 0.17
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.33
Consensus pattern (65 bp):
TTTAATAATTTCTAAAAGAAAAGGAGAAATAAACGACGTATAATTTTACTAATTAGATTCAAAGG
Found at i:6854876 original size:6 final size:6
Alignment explanation
Indices: 6854867--6854909 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
6854857 TCTTATGGTC
* *
6854867 AAATTT AAATTT AAATTCA AATATTT ACATTT AAATTT AAATT
1 AAATTT AAATTT AAATT-T AA-ATTT AAATTT AAATTT AAATT
6854910 GAGATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
6 25 0.81
7 3 0.10
8 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.47
Consensus pattern (6 bp):
AAATTT
Found at i:6854898 original size:20 final size:20
Alignment explanation
Indices: 6854869--6854908 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
6854859 TTATGGTCAA
6854869 ATTTAAATTTAAATTCAAAT
1 ATTTAAATTTAAATTCAAAT
* *
6854889 ATTTACATTTAAATTTAAAT
1 ATTTAAATTTAAATTCAAAT
6854909 TGAGATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTTAAATTTAAATTCAAAT
Found at i:6855914 original size:8 final size:8
Alignment explanation
Indices: 6855901--6855926 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
6855891 TAACGAATTC
6855901 ATATTTAA
1 ATATTTAA
6855909 ATATTTAA
1 ATATTTAA
6855917 ATATTTAA
1 ATATTTAA
6855925 AT
1 AT
6855927 TCATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
ATATTTAA
Found at i:6859402 original size:30 final size:31
Alignment explanation
Indices: 6859366--6859425 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
6859356 CGTTTTAACA
*
6859366 AAAACGCCACT-AAAACCAGTGCAATAGCGT
1 AAAACGCCACTAAAAACCAGAGCAATAGCGT
* *
6859396 AAAACGCCGCTAAAAACCAGAGCATTAGCG
1 AAAACGCCACTAAAAACCAGAGCAATAGCG
6859426 GCGCTTTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.43, C:0.27, G:0.18, T:0.12
Consensus pattern (31 bp):
AAAACGCCACTAAAAACCAGAGCAATAGCGT
Found at i:6859623 original size:7 final size:7
Alignment explanation
Indices: 6859608--6859765 Score: 57
Period size: 7 Copynumber: 21.4 Consensus size: 7
6859598 TTAATTATCA
*
6859608 TTATAGT
1 TTATGGT
6859615 TTATGGT
1 TTATGGT
6859622 TTATGGT
1 TTATGGT
*
6859629 TTGA-GAT
1 TT-ATGGT
*
6859636 ATATGGT
1 TTATGGT
**
6859643 TTGGGGT
1 TTATGGT
*
6859650 TTAAGGT
1 TTATGGT
6859657 TTATGAGTT
1 TTATG-G-T
6859666 AATTATGGT
1 --TTATGGT
* *
6859675 TTAAGAT
1 TTATGGT
*
6859682 ATATGGT
1 TTATGGT
*
6859689 TTAAGGT
1 TTATGGT
* *
6859696 TTAAGAT
1 TTATGGT
*
6859703 ATATGGT
1 TTATGGT
*
6859710 TTAGGGT
1 TTATGGT
*
6859717 TTAGGGT
1 TTATGGT
6859724 TTATGAGT
1 TTATG-GT
6859732 TAACTATGGT
1 T---TATGGT
* *
6859742 TTAAGAT
1 TTATGGT
*
6859749 ATATGGT
1 TTATGGT
*
6859756 TTAGGGT
1 TTATGGT
6859763 TTA
1 TTA
6859766 ATGTTTAAGA
Statistics
Matches: 110, Mismatches: 31, Indels: 20
0.68 0.19 0.12
Matches are distributed among these distances:
6 1 0.01
7 89 0.81
8 5 0.05
9 2 0.02
10 4 0.04
11 9 0.08
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.46
Consensus pattern (7 bp):
TTATGGT
Found at i:6859640 original size:21 final size:21
Alignment explanation
Indices: 6859616--6859766 Score: 131
Period size: 21 Copynumber: 6.8 Consensus size: 21
6859606 CATTATAGTT
* *
6859616 TATGGTTTATGGTTTGAGATA
1 TATGGTTTAGGGTTTAAGATA
* * *
6859637 TATGGTTTGGGGTTTAAGGTT
1 TATGGTTTAGGGTTTAAGATA
*
6859658 TATGAGTTAATTATGGTTTAAGATA
1 TATG-G-T--TTAGGGTTTAAGATA
*
6859683 TATGGTTTAAGGTTTAAGATA
1 TATGGTTTAGGGTTTAAGATA
* * *
6859704 TATGGTTTAGGGTTTAGGGTT
1 TATGGTTTAGGGTTTAAGATA
*
6859725 TATGAGTTAACTATGGTTTAAGATA
1 TATG-GTT---TAGGGTTTAAGATA
6859750 TATGGTTTAGGGTTTAA
1 TATGGTTTAGGGTTTAA
6859767 TGTTTAAGAG
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
21 64 0.62
22 4 0.04
23 2 0.02
24 4 0.04
25 29 0.28
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (21 bp):
TATGGTTTAGGGTTTAAGATA
Found at i:6859690 original size:67 final size:67
Alignment explanation
Indices: 6859616--6859766 Score: 248
Period size: 67 Copynumber: 2.3 Consensus size: 67
6859606 CATTATAGTT
* * * *
6859616 TATGGTTTATGGTTTGAGATATATGGTTTGGGGTTTAAGGTTTATGAGTTAATTATGGTTTAAGA
1 TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATGGTTTAAGA
6859681 TA
66 TA
*
6859683 TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAGGGTTTATGAGTTAACTATGGTTTAAGA
1 TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATGGTTTAAGA
6859748 TA
66 TA
*
6859750 TATGGTTTAGGGTTTAA
1 TATGGTTTAAGGTTTAA
6859767 TGTTTAAGAG
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 78 1.00
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (67 bp):
TATGGTTTAAGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTATGAGTTAACTATGGTTTAAGA
TA
Found at i:6859743 original size:46 final size:46
Alignment explanation
Indices: 6859693--6859782 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
6859683 TATGGTTTAA
* *
6859693 GGTTTAAGATATATGGTTTAGGGTTTAGGGTTTATGAGTTAACTAT
1 GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACTAT
*
6859739 GGTTTAAGATATATGGTTTAGGGTTTAATGTTTAAGAGTTAACT
1 GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACT
6859783 CGAATTTGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.28, C:0.02, G:0.27, T:0.43
Consensus pattern (46 bp):
GGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAAGAGTTAACTAT
Found at i:6860199 original size:73 final size:75
Alignment explanation
Indices: 6860114--6860298 Score: 311
Period size: 75 Copynumber: 2.5 Consensus size: 75
6860104 TGGCTTCCAA
* *
6860114 ATTATATCAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGC-GTTTTTTAAAACACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCAGTTTTTTAAAAAACGCCAC
6860178 -AAAAACACT
66 AAAAAACACT
* *
6860187 ATTATAACAAATAAAAATAAATATGAAAATTGAGAGATTAGTGGCATTTTTTTAAAAAACGCCAC
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCAGTTTTTTAAAAAACGCCAC
*
6860252 AAAAAATACT
66 AAAAAACACT
6860262 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGA
1 ATTATAACAAATAAAAATAAATATGAAAATTAAGAGA
6860299 AAAAAACGCC
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
73 43 0.41
74 17 0.16
75 44 0.42
ACGTcount: A:0.54, C:0.09, G:0.10, T:0.27
Consensus pattern (75 bp):
ATTATAACAAATAAAAATAAATATGAAAATTAAGAGATTAGTGGCAGTTTTTTAAAAAACGCCAC
AAAAAACACT
Found at i:6864764 original size:43 final size:42
Alignment explanation
Indices: 6864653--6864798 Score: 193
Period size: 43 Copynumber: 3.4 Consensus size: 42
6864643 AGATCATCGT
* *
6864653 TTTTTAGAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCG
1 TTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG
* * *
6864695 CTTTTAAAAAAAAGCGCCACTAAAGGTCCTGGTCTTTAGCGCCG
1 -TTTT-TAAAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG
* *
6864739 TTTTTACAAAAAGCGCCGCTAAAGGTCCTGTTCTTTAGCGGCA
1 TTTTTA-AAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG
6864782 TTTTCTAAAAAAGCGCC
1 TTTT-TAAAAAAGCGCC
6864799 AGTAATTTTT
Statistics
Matches: 90, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.01
43 54 0.60
44 35 0.39
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (42 bp):
TTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCG
Found at i:6873531 original size:14 final size:15
Alignment explanation
Indices: 6873512--6873540 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
6873502 CCTCCTTGTT
6873512 TGCAAT-CATGGATG
1 TGCAATCCATGGATG
6873526 TGCAATCCATGGATG
1 TGCAATCCATGGATG
6873541 ATAATGTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (15 bp):
TGCAATCCATGGATG
Found at i:6878536 original size:26 final size:26
Alignment explanation
Indices: 6878507--6878587 Score: 81
Period size: 26 Copynumber: 3.0 Consensus size: 26
6878497 AAAGTAAACA
*
6878507 ATAAAACAATTTAAAATGAATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
**
6878533 ATAAAAACAAGTTTAAAATAAATAATGT
1 AT-AAAACAA-TTTAAAATAAATAATAC
* * **
6878561 ATAAAGCATTTTAAAATCTATAATAC
1 ATAAAACAATTTAAAATAAATAATAC
6878587 A
1 A
6878588 CAAAGCAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
26 16 0.36
27 12 0.27
28 16 0.36
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.30
Consensus pattern (26 bp):
ATAAAACAATTTAAAATAAATAATAC
Found at i:6880438 original size:21 final size:21
Alignment explanation
Indices: 6880414--6880453 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6880404 AGATTTATCA
6880414 ATATAATT-ATATTTATTATAC
1 ATATAATTAATATTT-TTATAC
*
6880435 ATATATTTAATATTTTTAT
1 ATATAATTAATATTTTTAT
6880454 TATAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATAATTAATATTTTTATAC
Found at i:6880940 original size:42 final size:42
Alignment explanation
Indices: 6880879--6880966 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
6880869 AGTTGATAGA
*
6880879 ATAATTAGACAGCAACGTGCCACTTATAACTCAAGCTAACGT
1 ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
* * *
6880921 ATAATTAGATAGCAGCGTGCCACGTATAGCTCAAGCTAACGT
1 ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
6880963 ATAA
1 ATAA
6880967 AGACCTACAA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24
Consensus pattern (42 bp):
ATAATTAGACAGCAACGTGCCACGTATAACTCAAGCTAACGT
Found at i:6881298 original size:14 final size:15
Alignment explanation
Indices: 6881268--6881298 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
6881258 TAATATTTTA
6881268 AAATTTATTTAACTT
1 AAATTTATTTAACTT
6881283 AAATTTATTT-ACTT
1 AAATTTATTTAACTT
6881297 AA
1 AA
6881299 TATATTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (15 bp):
AAATTTATTTAACTT
Found at i:6881536 original size:84 final size:84
Alignment explanation
Indices: 6881419--6881587 Score: 311
Period size: 84 Copynumber: 2.0 Consensus size: 84
6881409 ACAGAGTATC
* * *
6881419 AATAAGAGTAGAGAAAGGGTCGTATAGAAGAAGGTTGATTCATCAACAACGGGGTCGAGAGTTGA
1 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
6881484 AAAACTGAGAATGGAGAGG
66 AAAACTGAGAATGGAGAGG
6881503 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
1 AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
6881568 AAAACTGAGAATGGAGAGG
66 AAAACTGAGAATGGAGAGG
6881587 A
1 A
6881588 CTTAGCCTCT
Statistics
Matches: 82, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 82 1.00
ACGTcount: A:0.41, C:0.09, G:0.33, T:0.17
Consensus pattern (84 bp):
AATAAGAGTAGAGAAAGGGTCATATAGAAGAAGGCTGATTCACCAACAACGGGGTCGAGAGTTGA
AAAACTGAGAATGGAGAGG
Found at i:6891701 original size:22 final size:22
Alignment explanation
Indices: 6891672--6891723 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
6891662 TAAGTCGATG
*
6891672 CCTCTTTTGCCCATGATTTTTGT
1 CCTCTTTTACCCATGATTTTT-T
6891695 -CTCTTTTACCCATGATTTTTT
1 CCTCTTTTACCCATGATTTTTT
6891716 CCTCTTTT
1 CCTCTTTT
6891724 TTTATTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.10, C:0.27, G:0.08, T:0.56
Consensus pattern (22 bp):
CCTCTTTTACCCATGATTTTTT
Found at i:6893263 original size:18 final size:18
Alignment explanation
Indices: 6893240--6893278 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
6893230 ACCGAATATC
6893240 AAATTCAT-AGTTTGAGAT
1 AAATTCATCA-TTTGAGAT
6893258 AAATTCATCATTTGAGAT
1 AAATTCATCATTTGAGAT
6893276 AAA
1 AAA
6893279 AGTTACCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.36
Consensus pattern (18 bp):
AAATTCATCATTTGAGAT
Found at i:6894105 original size:30 final size:31
Alignment explanation
Indices: 6894081--6894139 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
6894071 GTAAATACTC
* **
6894081 AAAATTTGAGGGGTTAA-AGTGTAAATATAA
1 AAAATTTGAAGGGCCAATAGTGTAAATATAA
6894111 AAAATTTGAAGGGCCAATAGTGTAAATAT
1 AAAATTTGAAGGGCCAATAGTGTAAATAT
6894140 TTTAAGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.46, C:0.03, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAATTTGAAGGGCCAATAGTGTAAATATAA
Found at i:6894377 original size:20 final size:21
Alignment explanation
Indices: 6894343--6894396 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
6894333 TGATGATCTT
*
6894343 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
6894364 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
6894384 TTTTATTATTTTA
1 TTATATTATTTTA
6894397 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:6894400 original size:3 final size:3
Alignment explanation
Indices: 6894382--6894430 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
6894372 TTTAATGAGA
*
6894382 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
6894427 TAT T
1 TAT T
6894431 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:6894402 original size:11 final size:11
Alignment explanation
Indices: 6894386--6894424 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
6894376 ATGAGATATT
6894386 TTATTATTTTA
1 TTATTATTTTA
*
6894397 TTATTATTTCA
1 TTATTATTTTA
6894408 TTATTATTTTA
1 TTATTATTTTA
6894419 TTATTA
1 TTATTA
6894425 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:6894410 original size:19 final size:19
Alignment explanation
Indices: 6894382--6894423 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
6894372 TTTAATGAGA
*
6894382 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
6894401 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
6894420 TATT
1 TATT
6894424 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:6896570 original size:23 final size:23
Alignment explanation
Indices: 6896539--6896657 Score: 64
Period size: 23 Copynumber: 5.1 Consensus size: 23
6896529 TAGCTCTTAA
*
6896539 GAGCATCCCGATAGGCTCTTTGT
1 GAGCTTCCCGATAGGCTCTTTGT
**
6896562 GAGCTTCCCGAT-GTGCTCGCT-T
1 GAGCTTCCCGATAG-GCTCTTTGT
* * * **
6896584 GAACTTCCTGATATACGGCTATCCG-
1 GAGCTTCCCG--ATA-GGCTCTTTGT
* *
6896609 GAACTTCCCGATAGGCTCTTCGT
1 GAGCTTCCCGATAGGCTCTTTGT
* *
6896632 GAGCTTTCCGATATGGTTCTTTGT
1 GAGCTTCCCGATA-GGCTCTTTGT
6896656 GA
1 GA
6896658 ACTACCTGAT
Statistics
Matches: 73, Mismatches: 15, Indels: 15
0.71 0.15 0.15
Matches are distributed among these distances:
22 17 0.23
23 30 0.41
24 12 0.16
25 13 0.18
26 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (23 bp):
GAGCTTCCCGATAGGCTCTTTGT
Found at i:6898947 original size:30 final size:29
Alignment explanation
Indices: 6898911--6898998 Score: 122
Period size: 30 Copynumber: 2.9 Consensus size: 29
6898901 CTTGGGGGTC
6898911 TATCAGTGCTTTTCCTCGGTTTCTCCCTGG
1 TATCAGTGCTTTTCCT-GGTTTCTCCCTGG
6898941 TATCAGTGCTTTTCCTTGGTTTCTCCCTGG
1 TATCAGTGCTTTTCC-TGGTTTCTCCCTGG
* * *
6898971 TATCGGTGCTTCTTCGTGGTTTGTCCCT
1 TATCAGTGCTT-TTCCTGGTTTCTCCCT
6898999 TTGATCCATA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 49 0.92
31 4 0.08
ACGTcount: A:0.06, C:0.27, G:0.22, T:0.45
Consensus pattern (29 bp):
TATCAGTGCTTTTCCTGGTTTCTCCCTGG
Found at i:6900005 original size:20 final size:20
Alignment explanation
Indices: 6899980--6900020 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
6899970 AAGAATACAG
6899980 TGTCTATAAATATATGTATT
1 TGTCTATAAATATATGTATT
6900000 TGTCTATAAATATATGTATT
1 TGTCTATAAATATATGTATT
6900020 T
1 T
6900021 ATTCACATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (20 bp):
TGTCTATAAATATATGTATT
Found at i:6900066 original size:106 final size:106
Alignment explanation
Indices: 6899914--6900106 Score: 377
Period size: 106 Copynumber: 1.8 Consensus size: 106
6899904 TGTATATACA
6899914 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
6899979 GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
66 GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
*
6900020 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAGTACA
1 TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
6900085 GTGTCTATAAATATATGTATTT
66 GTGTCTATAAATATATGTATTT
6900107 ATTCACATTT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 86 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (106 bp):
TATTCACATTTAAAATTGTTTTCCCTAGCTGAAGTTGCATGTACTTGTGCATTTAAAAGAATACA
GTGTCTATAAATATATGTATTTGTCTATAAATATATGTATT
Found at i:6903256 original size:43 final size:44
Alignment explanation
Indices: 6903208--6903295 Score: 124
Period size: 44 Copynumber: 2.0 Consensus size: 44
6903198 TCTAATTTGA
* *
6903208 TACCTAAACTTGACAC-TTTTTCTTAAGTTGGTACTTAATATTT
1 TACCTAAACTTGACACTTTTTTCCTAAGTTGGTACCTAATATTT
* * *
6903251 TACCTAAACTTGACTCTTTTTTCCTAATTTGGTACCTAATCTTT
1 TACCTAAACTTGACACTTTTTTCCTAAGTTGGTACCTAATATTT
6903295 T
1 T
6903296 TTTTTGTTCG
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
43 15 0.38
44 24 0.62
ACGTcount: A:0.25, C:0.19, G:0.08, T:0.48
Consensus pattern (44 bp):
TACCTAAACTTGACACTTTTTTCCTAAGTTGGTACCTAATATTT
Found at i:6909911 original size:9 final size:9
Alignment explanation
Indices: 6909890--6909919 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
6909880 AGAACTATAA
6909890 AAAAATTATT
1 AAAAATTA-T
6909900 AAAAATTAT
1 AAAAATTAT
6909909 AAAAATTAT
1 AAAAATTAT
6909918 AA
1 AA
6909920 CTATTTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.60
10 8 0.40
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Done.