Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 220 of 295
Found at i:70213826 original size:27 final size:27
Alignment explanation
Indices: 70213674--70213845 Score: 159
Period size: 27 Copynumber: 6.3 Consensus size: 27
70213664 TACTCCCGGG
* * *
70213674 TTGTAAAATTA-TCAAGATACCCATGAT
1 TTGTAAAATTACT-AAAATACCCCTAAT
* * *
70213701 TTGTAAAATTACCAAAATA-CCATCGAT
1 TTGTAAAATTACTAAAATACCCCT-AAT
* * **
70213728 TTGTAAAATTACTGAAATACCCCCAGG
1 TTGTAAAATTACTAAAATACCCCTAAT
*
70213755 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACTAAAATACCCCTAAT
* *
70213782 TTGTGAAATTACTAAAATACCCCAAAT
1 TTGTAAAATTACTAAAATACCCCTAAT
* * *
70213809 TTGTAAAATTATTGAAATACCCCTTGAT
1 TTGTAAAATTACTAAAATACCCC-TAAT
70213837 TTGTAAAAT
1 TTGTAAAAT
70213846 GACCGTAATA
Statistics
Matches: 119, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.03
27 102 0.86
28 13 0.11
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.32
Consensus pattern (27 bp):
TTGTAAAATTACTAAAATACCCCTAAT
Found at i:70213855 original size:28 final size:27
Alignment explanation
Indices: 70213839--70213926 Score: 149
Period size: 27 Copynumber: 3.3 Consensus size: 27
70213829 CCCTTGATTT
70213839 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
70213866 GTAAAATAACCGTAATATCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
70213893 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
70213920 GTAAAAT
1 GTAAAAT
70213927 AACGATTATG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:70214407 original size:33 final size:33
Alignment explanation
Indices: 70214336--70214427 Score: 114
Period size: 33 Copynumber: 2.8 Consensus size: 33
70214326 GCCCACATCG
* * *
70214336 TTACTATATAGGGCTAAAGCCCAGACTGTTCTA
1 TTACTGTATAGGGCTAAGGCCCAGACTGTACTA
*
70214369 TTACTGTATATGGCTAAGGCCCAGACTGTACTGA
1 TTACTGTATAGGGCTAAGGCCCAGACTGTACT-A
* *
70214403 -TACTGGATAGGGCTCAGGCCCAGAC
1 TTACTGTATAGGGCTAAGGCCCAGAC
70214428 AGTTACTGCA
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
33 50 0.98
34 1 0.02
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (33 bp):
TTACTGTATAGGGCTAAGGCCCAGACTGTACTA
Found at i:70216775 original size:93 final size:93
Alignment explanation
Indices: 70216667--70216837 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70216657 GCCCATAAGT
* * *
70216667 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70216732 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
70216760 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70216825 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70216838 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:70216834 original size:46 final size:46
Alignment explanation
Indices: 70216659--70216834 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
70216649 TGTAACCCGC
* * * *
70216659 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
70216705 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * * *
70216755 --TTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
70216798 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70216835 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 63 0.59
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:70221612 original size:79 final size:80
Alignment explanation
Indices: 70221481--70221628 Score: 219
Period size: 79 Copynumber: 1.9 Consensus size: 80
70221471 TATTCGGATG
*** * *
70221481 ATAACCGGGCTAAGTCTTGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAG-CCCGAAGGCA
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
70221545 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
*
70221560 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGTCCCGAAGGC
70221624 ATTTG
65 ATTTG
70221629 AGCAAGTAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
78 2 0.03
79 45 0.74
80 14 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:70221650 original size:79 final size:79
Alignment explanation
Indices: 70221481--70221651 Score: 213
Period size: 79 Copynumber: 2.2 Consensus size: 79
70221471 TATTCGGATG
*** * *
70221481 ATAACCGGGCTAAGTCTTGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
* *
70221546 TTGTGCGAGTTACT
66 TTGAGCAAGTTACT
*
70221560 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGC
70221624 ATTTGAGCAAG-TAGCT
64 ATTTGAGCAAGTTA-CT
*
70221640 ATATCC-GGCTAA
1 ATAACCGGGCTAA
70221652 ATTCCGAAGG
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
78 2 0.03
79 53 0.66
80 25 0.31
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCAT
TTGAGCAAGTTACT
Found at i:70221661 original size:39 final size:40
Alignment explanation
Indices: 70221481--70221628 Score: 219
Period size: 40 Copynumber: 3.7 Consensus size: 40
70221471 TATTCGGATG
** * *
70221481 ATAACCGGGCTAAGTCTTGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70221521 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
70221560 ATAACCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
70221600 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
70221629 AGCAAGTAGC
Statistics
Matches: 97, Mismatches: 8, Indels: 6
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.34
40 64 0.66
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:70224473 original size:40 final size:40
Alignment explanation
Indices: 70224414--70224671 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
70224404 AAGCAGAGTA
* * * *
70224414 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * *
70224453 TCTTCGGAACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
70224493 CCTTCGAGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70224533 CCTTCGGGACTTAGCCCAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70224573 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
70224613 CCTTCGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70224653 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70224672 TTATCATCCA
Statistics
Matches: 192, Mismatches: 23, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 13 0.07
40 178 0.93
41 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70232555 original size:40 final size:40
Alignment explanation
Indices: 70232493--70232707 Score: 292
Period size: 40 Copynumber: 5.4 Consensus size: 40
70232483 AACCCAAGTA
* * * *
70232493 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
** *
70232532 CCTTCGGGACAGAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70232572 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70232612 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
70232652 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
70232692 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
70232708 TGGTTATCAT
Statistics
Matches: 159, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.08
40 147 0.92
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70238731 original size:93 final size:93
Alignment explanation
Indices: 70238624--70238794 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
70238614 GCCCATAAGT
* *
70238624 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70238689 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
70238717 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
70238782 CGAGTTCGGATGC
66 CGAGTTCGGATGC
70238795 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:70238791 original size:46 final size:46
Alignment explanation
Indices: 70238616--70238791 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
70238606 TGTAACCCGC
* * * * *
70238616 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
70238662 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * *
70238712 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
70238755 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
70238792 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 63 0.58
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:70240298 original size:24 final size:24
Alignment explanation
Indices: 70240260--70240412 Score: 236
Period size: 24 Copynumber: 6.4 Consensus size: 24
70240250 CTAGAGGCCT
*
70240260 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
* *
70240285 AGCCATTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
70240309 AACCCTTTTGATAACT-GGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70240332 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
70240356 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70240380 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
70240404 AGCCCTTTT
1 AGCCCTTTT
70240413 TCACTTCCTC
Statistics
Matches: 118, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
23 21 0.18
24 93 0.79
25 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:70240343 original size:71 final size:72
Alignment explanation
Indices: 70240260--70240412 Score: 254
Period size: 71 Copynumber: 2.1 Consensus size: 72
70240250 CTAGAGGCCT
*
70240260 AGCCTCTTTTAATAACTGGGGCAAAAGCCATTTTGATAACTGGGGCATAAACCCTTTTGATAACT
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCATTTTGATAACTGGGGCATAAACCCTTTTAATAACT
70240325 -GGGCATA
65 GGGGCATA
* * *
70240332 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTAATAACTG
1 AGCCCTTTTAATAACTGGGGCAAAAGCCATTTTGATAACTGGGGCATAAACCCTTTTAATAACTG
70240397 GGGCATA
66 GGGCATA
70240404 AGCCCTTTT
1 AGCCCTTTT
70240413 TCACTTCCTC
Statistics
Matches: 76, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
71 56 0.74
72 20 0.26
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (72 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCATTTTGATAACTGGGGCATAAACCCTTTTAATAACTG
GGGCATA
Found at i:70240487 original size:20 final size:20
Alignment explanation
Indices: 70240462--70240528 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
70240452 TTATGAATAC
*
70240462 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
70240482 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
70240502 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
70240522 ACCATGT
1 ATCATGT
70240529 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:70247283 original size:27 final size:27
Alignment explanation
Indices: 70247253--70247337 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
70247243 TCCCCAGTTT
*
70247253 GTAAAATGACCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* *
70247280 GTAAAATAACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
70247307 AT-AAATGATCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
70247333 GTAAA
1 GTAAA
70247338 TTTACGATGA
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
26 21 0.44
27 27 0.56
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:70247319 original size:26 final size:25
Alignment explanation
Indices: 70247256--70247338 Score: 94
Period size: 26 Copynumber: 3.2 Consensus size: 25
70247246 CCAGTTTGTA
*
70247256 AAATGACCGTAATACCCTTGTAGGGT
1 AAATGACCGTAATACCCCTGTA-GGT
* *
70247282 AAAATAACCGTAATGCCCCTGTAGGAT
1 -AAATGACCGTAATACCCCTGTAGG-T
*
70247309 AAATGATCGTAATACCCCTGTATGGT
1 AAATGACCGTAATACCCCTGTA-GGT
70247335 AAAT
1 AAAT
70247339 TTACGATGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
26 26 0.54
27 22 0.46
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (25 bp):
AAATGACCGTAATACCCCTGTAGGT
Found at i:70249026 original size:40 final size:40
Alignment explanation
Indices: 70248964--70249172 Score: 172
Period size: 40 Copynumber: 5.2 Consensus size: 40
70248954 TCTTCGGACC
* * ***
70248964 TAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAACT
*
70249004 TAGCACGGATATATCACTAGCACGAATGCTCTTTGGAACT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAACT
* * * *
70249044 TAGCCCGGATACATCACTAGCATGAATGCTCTTCGGGACT
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAACT
* * * * * * *
70249084 TAGCCCGAATTTAGTAACTCGCACCAATGC-CTTCGGATCT
1 TAGCCCGGATATA-TCACTAGCACGAATGCTCTTTGGAACT
* * * * *
70249124 TAGTCCGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACT
1 TAGCCCGGATAT-ATCAC-TAGCACGAATGCTCTTTGGAACT
70249164 TAGCCCGGA
1 TAGCCCGGA
70249173 CATCATTCGA
Statistics
Matches: 136, Mismatches: 30, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
40 119 0.88
41 17 0.12
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
TAGCCCGGATATATCACTAGCACGAATGCTCTTTGGAACT
Found at i:70249544 original size:29 final size:29
Alignment explanation
Indices: 70249478--70249555 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
70249468 CTTAATAATC
*
70249478 AACCACGCACACTTAGTG-CATGTACTTTA
1 AACC-CGCACACTTAGTGCCATGCACTTTA
*
70249507 AACTCGCACACTTAGTGCCATGCA-TTTCA
1 AACCCGCACACTTAGTGCCATGCACTTT-A
*
70249536 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70249556 ATCTCACAAC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 16 0.37
29 27 0.63
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCACTTTA
Found at i:70249595 original size:43 final size:43
Alignment explanation
Indices: 70249537--70249639 Score: 179
Period size: 43 Copynumber: 2.4 Consensus size: 43
70249527 TGCATTTCAA
70249537 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
70249580 TCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTCTT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
70249623 GCCCGCGCACTTAGTGC
1 GCCCGCACACTTAGTGC
70249640 TGAAAACCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.24, C:0.37, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:70250739 original size:27 final size:27
Alignment explanation
Indices: 70250675--70250731 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
70250665 TTCCTATGAA
70250675 AATAGATTCATCAAGGTTCGTTTACAT
1 AATAGATTCATCAAGGTTCGTTTACAT
70250702 AATAGATTCATCAAGGTTCGTTTACAT
1 AATAGATTCATCAAGGTTCGTTTACAT
70250729 AAT
1 AAT
70250732 TTATTCATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.37
Consensus pattern (27 bp):
AATAGATTCATCAAGGTTCGTTTACAT
Found at i:70251569 original size:37 final size:37
Alignment explanation
Indices: 70251519--70251597 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70251509 TTATTACGAA
* * *
70251519 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
70251556 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
70251593 GTCTT
1 GTCTT
70251598 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:70251847 original size:47 final size:46
Alignment explanation
Indices: 70251715--70252219 Score: 859
Period size: 47 Copynumber: 10.7 Consensus size: 46
70251705 GCCCTTCGGG
70251715 ACTTATCACATTCATCACATCGGCCATTAGGCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATAC
70251764 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGG-CCTATCAC--ATATATAC
70251813 ACTTTCACATTCATCACATCGGCCATTA-GCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCAC--ATATATAC
70251860 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATAC
70251906 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
70251953 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
*
70252000 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGC-CTATCACATATATAC
70252047 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
*
70252094 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGC-CTATCACATATATAC
70252141 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC-TATCACATATATAC
70252188 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
70252220 ATACTATCAT
Statistics
Matches: 445, Mismatches: 4, Indels: 16
0.96 0.01 0.03
Matches are distributed among these distances:
46 40 0.09
47 319 0.72
48 36 0.08
49 50 0.11
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (46 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTATCACATATATAC
Found at i:70252159 original size:25 final size:25
Alignment explanation
Indices: 70251987--70252065 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
70251977 ATTAGGCCTT
70251987 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
70252012 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
70252034 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
70252059 ATCACAT
1 ATCACAT
70252066 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:70254726 original size:26 final size:27
Alignment explanation
Indices: 70254636--70254735 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 27
70254626 ATGGAGGAAG
* * *
70254636 TACTGTAC-TGGTGACTATGTCACATT
1 TACTGTTCTTGGTGGCTATGCCACATT
* *
70254662 CACTGTTGC-TGGTGGCTATGCCACAAT
1 TACTGTT-CTTGGTGGCTATGCCACATT
* *
70254689 TACTGATATTGGTGGCT-TGCCACATT
1 TACTGTTCTTGGTGGCTATGCCACATT
*
70254715 TACTGTTCTTGGTAGCTATGC
1 TACTGTTCTTGGTGGCTATGC
70254736 TGCATTATTA
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
26 27 0.46
27 32 0.54
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (27 bp):
TACTGTTCTTGGTGGCTATGCCACATT
Found at i:70257034 original size:28 final size:27
Alignment explanation
Indices: 70256976--70257152 Score: 291
Period size: 28 Copynumber: 6.4 Consensus size: 27
70256966 TTAAGTCCGT
* *
70256976 ACACTCAGTGCTATATAGTCAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGC
*
70257003 ACACTTAGTGCTACATAATCAAACTCGC
1 ACACTTAGTGCTACATAGTC-AACTCGC
70257031 ACACTTAGTGCTACATAGTCAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGC
70257058 ACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAGTC-AACTCGC
70257086 ACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAGTC-AACTCGC
*
70257114 ACACTTAGTGCTACATAGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAACTCGC
70257141 ACACTTAGTGCT
1 ACACTTAGTGCT
70257153 GCACAATTTA
Statistics
Matches: 143, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 62 0.43
28 81 0.57
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAGTCAACTCGC
Found at i:70257043 original size:55 final size:55
Alignment explanation
Indices: 70256976--70257152 Score: 302
Period size: 55 Copynumber: 3.2 Consensus size: 55
70256966 TTAAGTCCGT
* * *
70256976 ACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGC
70257031 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGC
*
70257086 ACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATTCGC
1 ACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACTCGC
70257141 ACACTTAGTGCT
1 ACACTTAGTGCT
70257153 GCACAATTTA
Statistics
Matches: 117, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
55 90 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGC
Found at i:70257114 original size:83 final size:82
Alignment explanation
Indices: 70256976--70257152 Score: 309
Period size: 83 Copynumber: 2.1 Consensus size: 82
70256966 TTAAGTCCGT
* *
70256976 ACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTG
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTG
70257041 CTACATAGTCAACTCGC
66 CTACATAGTCAACTCGC
*
70257058 ACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGT
1 ACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGT
*
70257123 GCTACATAGTCAATTCGC
65 GCTACATAGTCAACTCGC
70257141 ACACTTAGTGCT
1 ACACTTAGTGCT
70257153 GCACAATTTA
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 18 0.20
83 72 0.80
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTG
CTACATAGTCAACTCGC
Found at i:70265139 original size:28 final size:27
Alignment explanation
Indices: 70265078--70265257 Score: 288
Period size: 28 Copynumber: 6.6 Consensus size: 27
70265068 ATATTAAGTC
* *
70265078 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
*
70265105 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
70265133 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
70265160 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
70265188 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
70265216 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
70265243 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
70265258 GCACAATTTA
Statistics
Matches: 145, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
27 64 0.44
28 81 0.56
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:70265146 original size:55 final size:55
Alignment explanation
Indices: 70265078--70265257 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
70265068 ATATTAAGTC
* * *
70265078 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
70265133 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
*
70265188 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTC-AATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACT
*
70265243 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
70265258 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
Found at i:70265216 original size:83 final size:82
Alignment explanation
Indices: 70265078--70265257 Score: 306
Period size: 83 Copynumber: 2.2 Consensus size: 82
70265068 ATATTAAGTC
* *
70265078 CGCACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
70265143 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
70265160 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
*
70265225 AGTGCTACATAGTCAATT
65 AGTGCTACATAGTCAACT
*
70265243 CGTACACTTAGTGCT
1 CGCACACTTAGTGCT
70265258 GCACAATTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
82 21 0.23
83 71 0.77
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.27
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:70278705 original size:48 final size:48
Alignment explanation
Indices: 70278634--70278879 Score: 402
Period size: 48 Copynumber: 5.0 Consensus size: 48
70278624 AGATAAATAT
*
70278634 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
70278682 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
*
70278732 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
*
70278782 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
*
70278830 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
70278878 AT
1 AT
70278880 GTGTGTATAT
Statistics
Matches: 190, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 93 0.49
49 4 0.02
50 93 0.49
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:70278751 original size:50 final size:50
Alignment explanation
Indices: 70278634--70278870 Score: 401
Period size: 50 Copynumber: 4.8 Consensus size: 50
70278624 AGATAAATAT
* *
70278634 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
*
70278682 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
70278732 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
* *
70278782 ATATGTATATGTGGTAAAGCCAAATGGCTAGTGTG-AA-ATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
70278830 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
70278871 GTAGGAGATG
Statistics
Matches: 180, Mismatches: 5, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
48 79 0.44
49 6 0.03
50 95 0.53
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (50 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
Found at i:70278828 original size:98 final size:100
Alignment explanation
Indices: 70278634--70278870 Score: 401
Period size: 98 Copynumber: 2.4 Consensus size: 100
70278624 AGATAAATAT
* *
70278634 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
*
70278697 AAAGCCGAATGGCTAATGTGAAATATATATATGAG
66 AAAGCCAAATGGCTAATGTGAAATATATATATGAG
70278732 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
* *
70278797 AAAGCCAAATGGCTAGTGTG-AA-ATATGTATGAG
66 AAAGCCAAATGGCTAATGTGAAATATATATATGAG
70278830 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
70278871 GTAGGAGATG
Statistics
Matches: 132, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
98 85 0.64
99 4 0.03
100 43 0.33
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (100 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
AAAGCCAAATGGCTAATGTGAAATATATATATGAG
Found at i:70279105 original size:36 final size:37
Alignment explanation
Indices: 70279020--70279121 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
70279010 GGAAATATAT
*
70279020 TCCGGGTAAGACCCGATAACTACGTGTTGAGATTATG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
* *
70279057 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
70279094 -CCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATAACTACGTGTGG
70279122 GGACTATTCG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 27 0.44
37 34 0.56
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTATG
Found at i:70280449 original size:40 final size:40
Alignment explanation
Indices: 70280394--70280702 Score: 573
Period size: 40 Copynumber: 7.7 Consensus size: 40
70280384 AGAATTGAGA
70280394 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
* *
70280434 GTTATATCCGGGCTAAGTCCCGAAGAGCATTTGTGCTGGG
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
70280474 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
70280514 GTTATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
70280554 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGG
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
70280594 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
70280634 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
1 GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
*
70280674 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GTTATATCCGGGCTAAGTCCCGAAGAGCA
70280703 ATCATGCTCG
Statistics
Matches: 260, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 260 1.00
ACGTcount: A:0.20, C:0.22, G:0.31, T:0.27
Consensus pattern (40 bp):
GTTATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGT
Found at i:70280928 original size:25 final size:25
Alignment explanation
Indices: 70280878--70280928 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
70280868 TGTGTAACAA
* *
70280878 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
70280903 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
70280928 C
1 C
70280929 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:70282766 original size:19 final size:19
Alignment explanation
Indices: 70282730--70282786 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
70282720 ATTTATAGAG
*
70282730 ATGTGAATGAAT-TGTTGTT
1 ATGTGAATAAATAT-TTGTT
70282749 ATGTGAATAAATATTTGTT
1 ATGTGAATAAATATTTGTT
*
70282768 -TGATGATATATATATTTGT
1 ATG-TGA-ATAAATATTTGT
70282787 ATTCGGCAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 2 0.06
19 19 0.58
20 12 0.36
ACGTcount: A:0.32, C:0.00, G:0.19, T:0.49
Consensus pattern (19 bp):
ATGTGAATAAATATTTGTT
Found at i:70284391 original size:48 final size:48
Alignment explanation
Indices: 70284320--70284565 Score: 393
Period size: 50 Copynumber: 5.0 Consensus size: 48
70284310 AGATAAATAT
* *
70284320 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
70284368 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
*
70284418 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
70284468 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
* *
70284516 ATATGTATATGTGGTAAAGCCGAATGGCTAGCGTGAAATATGTAGGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
70284564 AT
1 AT
70284566 GTGTGTATAT
Statistics
Matches: 190, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
48 92 0.48
49 4 0.02
50 94 0.49
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
Found at i:70284514 original size:98 final size:100
Alignment explanation
Indices: 70284320--70284556 Score: 392
Period size: 98 Copynumber: 2.4 Consensus size: 100
70284310 AGATAAATAT
* * *
70284320 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
70284383 AAAGCCGAATGGCTAATGTGAAATATATATATGAG
66 AAAGCCGAATGGCTAATGTGAAATATATATATGAG
70284418 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
* *
70284483 AAAGCCGAATGGCTAGTGTG-AA-ATATGTATGAG
66 AAAGCCGAATGGCTAATGTGAAATATATATATGAG
*
70284516 ATATGTATATGTGGTAAAGCCGAATGGCTAGCGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
70284557 GTAGGAGATG
Statistics
Matches: 131, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
98 83 0.63
99 4 0.03
100 44 0.34
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (100 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATATATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATGTGAAATATATATATGAG
Found at i:70284619 original size:148 final size:147
Alignment explanation
Indices: 70284320--70284600 Score: 397
Period size: 148 Copynumber: 1.9 Consensus size: 147
70284310 AGATAAATAT
70284320 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * * * *
70284385 AGCCGAATGGCTAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
66 AGCCGAATGGCTAACGTGAAATATATATAGGAGATATGTATATATGGT-AAGCCGAATGCCAAAT
70284450 GTGAAATATATATATGAG
130 GTGAAATATATATATGAG
* *
70284468 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * * * *
70284533 AGCCGAATGGCTAGCGTG-AA-ATATGTAGGAGATGTGTGTATATTGT-GGCCGAATGACCAAAT
66 AGCCGAATGGCTAACGTGAAATATATATAGGAGATATGTATATATGGTAAGCCGAATG-CCAAAT
70284595 GTGAAA
130 GTGAAA
70284601 GGTGTGTACT
Statistics
Matches: 118, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
144 8 0.07
145 9 0.08
146 20 0.17
147 2 0.02
148 79 0.67
ACGTcount: A:0.35, C:0.07, G:0.27, T:0.31
Consensus pattern (147 bp):
ATATGTATATGTAGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAACGTGAAATATATATAGGAGATATGTATATATGGTAAGCCGAATGCCAAATG
TGAAATATATATATGAG
Found at i:70284805 original size:37 final size:37
Alignment explanation
Indices: 70284707--70284808 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
70284697 GAAATATATT
* *
70284707 CCGGGTAAGACCCGATGACTACGTATGGAGATTATGT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
70284744 CCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
70284781 CCGGGTAAGACCCGATAACTACGTGTGG
1 CCGGGTAAGACCCGATGACTACGTGTGG
70284809 GGACTATTCG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.23
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:70288120 original size:60 final size:60
Alignment explanation
Indices: 70288020--70288156 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
70288010 AACTATGTTA
* * * *
70288020 ATATAGGCAAGGCCCAATATATCTCGACTTGTAATAGGGCTACT-GCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATATCTCGAATTGTAATAGGGCTA-TGGCCCAGATTAATACTG
* * *
70288080 ATATGGGCTAGGCCCAATATA-CTCTGATATTGTAA-GGGGCTATGGCCTAGATTAATATTG
1 ATATGGGCTAGGCCCAATATATCTC-GA-ATTGTAATAGGGCTATGGCCCAGATTAATACTG
70288140 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
70288157 GTTAACACTA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 49 0.74
61 13 0.20
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATATCTCGAATTGTAATAGGGCTATGGCCCAGATTAATACTG
Found at i:70292456 original size:60 final size:59
Alignment explanation
Indices: 70292380--70292509 Score: 156
Period size: 60 Copynumber: 2.2 Consensus size: 59
70292370 AACTATGTTA
* *
70292380 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAAGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AAGGCTACGGCCCAGATTAATACTG
** * *
70292440 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAAGGCTACGGCCCAGATTAATACTG
70292500 ATATGGGCTA
1 ATATGGGCTA
70292510 AGTCCCAGTT
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
59 1 0.02
60 52 0.85
61 8 0.13
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAAGGCTACGGCCCAGATTAATACTG
Found at i:70296659 original size:50 final size:49
Alignment explanation
Indices: 70296543--70296730 Score: 178
Period size: 50 Copynumber: 3.8 Consensus size: 49
70296533 GGACAAGGCT
* * * * * **
70296543 ATCTGGTACTCGTAGTAGCCTGTACTTAGTACTACACATGCGACCAATT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
* * * *
70296592 ACCCGATACACGTAGTAGCTTGCACGTAGTACTACACACGTGACCTAACC
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACC
* **
70296642 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CC
* * ** *
70296693 ATCGGGTATGCATAGTAGCCTGCACTTAGTACTACACA
1 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACA
70296731 TGCGACCTCA
Statistics
Matches: 113, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
49 36 0.32
50 43 0.38
51 34 0.30
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACC
Found at i:70297004 original size:27 final size:27
Alignment explanation
Indices: 70296964--70297017 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
70296954 AGGTACAACC
* *
70296964 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
70296991 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
70297018 TCACATTTTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:70298501 original size:163 final size:163
Alignment explanation
Indices: 70298231--70298719 Score: 942
Period size: 163 Copynumber: 3.0 Consensus size: 163
70298221 TTTACTTAGA
*
70298231 TTCCTCAATCTCATACTTGATACCAAAGTACCTTAGCTCAGGTGGTGCCTCCAATACATCTCTTT
1 TTCCTCAATCTCATACTTGATACCAAAGTACCTTCGCTCAGGTGGTGCCTCCAATACATCTCTTT
70298296 AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTCCCAATTGTTTTTAAATTTTCAAAGGCT
66 AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTCCCAATTGTTTTTAAATTTTCAAAGGCT
70298361 TCTCAGTTTCCCATGATATCATGACATAAAACC
131 TCTCAGTTTCCCATGATATCATGACATAAAACC
70298394 TTCCTCAATCTCATACTTGATACCAAAGTACCTTCGCTCAGGTGGTGCCTCCAATACATCTCTTT
1 TTCCTCAATCTCATACTTGATACCAAAGTACCTTCGCTCAGGTGGTGCCTCCAATACATCTCTTT
70298459 AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTCCCAATTGTTTTTAAATTTTCAAAGGCT
66 AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTCCCAATTGTTTTTAAATTTTCAAAGGCT
70298524 TCTCAGTTTCCCATGATATCATGACATAAAACC
131 TCTCAGTTTCCCATGATATCATGACATAAAACC
70298557 TTCCTCAATCTCATACTTGATACCAAAGTACCTTCGCTCAGGTGGTGCCTCCAATACATCTCTTT
1 TTCCTCAATCTCATACTTGATACCAAAGTACCTTCGCTCAGGTGGTGCCTCCAATACATCTCTTT
*
70298622 AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTTCCAATTGTTTTTAAATTTTCAAAGGCT
66 AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTCCCAATTGTTTTTAAATTTTCAAAGGCT
* *
70298687 TCTTAGTTTTCCATGATATCATGACATAAAACC
131 TCTCAGTTTCCCATGATATCATGACATAAAACC
70298720 CGGATCTCAA
Statistics
Matches: 322, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
163 322 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (163 bp):
TTCCTCAATCTCATACTTGATACCAAAGTACCTTCGCTCAGGTGGTGCCTCCAATACATCTCTTT
AATTTCTCATATGATTTGAAAGCTTACGGACTCAACTCCCAATTGTTTTTAAATTTTCAAAGGCT
TCTCAGTTTCCCATGATATCATGACATAAAACC
Found at i:70302782 original size:49 final size:49
Alignment explanation
Indices: 70302729--70302918 Score: 159
Period size: 49 Copynumber: 3.8 Consensus size: 49
70302719 GTGGACAAGG
* *
70302729 TTATCTGGTACTCATAGTAGCATGCACTTAGTACTACACATGCGTCCAA
1 TTATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACACGCGTCCAA
* * * * *
70302778 TTATCCGGTACAT-GTAGTAGCCTGCACTTAGTACTACACACGTGACCTA
1 TTATCTGGTAC-TCATAGTAGCCTGCACTTAGTACTACACACGCGTCCAA
* * * * * * * *
70302827 TCCATCCT-GTACACGTAGTAGCCTACGCTTAATACTACACACGTGATCGAA
1 T-TAT-CTGGTACTCATAGTAGCCTGCACTTAGTACTACACACGCG-TCCAA
* * *
70302878 GTTATCGGGTACGCATAGTAGCCTGCTCTTAGTACTACACA
1 -TTATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACA
70302919 TGCGACCTCA
Statistics
Matches: 111, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
49 41 0.37
50 36 0.32
51 33 0.30
52 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.28
Consensus pattern (49 bp):
TTATCTGGTACTCATAGTAGCCTGCACTTAGTACTACACACGCGTCCAA
Found at i:70305271 original size:20 final size:20
Alignment explanation
Indices: 70305235--70305272 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
70305225 ATCAGCTCAC
*
70305235 TTGAGCTTGTTTCAGCTTGT
1 TTGAGCTTATTTCAGCTTGT
70305255 TTGAGCTTAATTT-AGCTT
1 TTGAGCTT-ATTTCAGCTT
70305273 CTTTCCAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.16, C:0.13, G:0.21, T:0.50
Consensus pattern (20 bp):
TTGAGCTTATTTCAGCTTGT
Found at i:70307830 original size:21 final size:20
Alignment explanation
Indices: 70307802--70307855 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 20
70307792 AATCAATTGA
70307802 GAGAAAAAGAAAAGAATGAATGT
1 GAGAAAAAGAAAAGAA--AA-GT
70307825 GA-AAAAA-AAAAGAAAAGT
1 GAGAAAAAGAAAAGAAAAGT
70307843 GAGAAAAAGAAAA
1 GAGAAAAAGAAAA
70307856 AACAGAATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.14
19 7 0.24
20 4 0.14
21 7 0.24
22 5 0.17
23 2 0.07
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.07
Consensus pattern (20 bp):
GAGAAAAAGAAAAGAAAAGT
Found at i:70307851 original size:15 final size:15
Alignment explanation
Indices: 70307831--70307927 Score: 62
Period size: 15 Copynumber: 6.7 Consensus size: 15
70307821 ATGTGAAAAA
*
70307831 AAAAAGAAAAGTGAG
1 AAAAAGAAAAGAGAG
* *
70307846 AAAAAGAAAAAACAG
1 AAAAAGAAAAGAGAG
*
70307861 -AATAGCAAAAGAGAG
1 AAAAAG-AAAAGAGAG
*
70307876 AGAAAAG-AAAGTGAG
1 A-AAAAGAAAAGAGAG
70307891 -AAAAGAAAA-AGATG
1 AAAAAGAAAAGAGA-G
*
70307905 AACAAGAAAA-AGA-
1 AAAAAGAAAAGAGAG
*
70307918 AAATAGAAAA
1 AAAAAGAAAA
70307928 AAAAGTTTTA
Statistics
Matches: 64, Mismatches: 12, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
13 15 0.23
14 8 0.12
15 37 0.58
17 4 0.06
ACGTcount: A:0.70, C:0.03, G:0.22, T:0.05
Consensus pattern (15 bp):
AAAAAGAAAAGAGAG
Found at i:70307856 original size:21 final size:21
Alignment explanation
Indices: 70307802--70307925 Score: 73
Period size: 21 Copynumber: 5.8 Consensus size: 21
70307792 AATCAATTGA
70307802 GAGAAAAAG-AAAAGAATGAAT
1 GAGAAAAAGAAAAAGAA-GAAT
*
70307823 GTGAAAAA-AAAAAGAA-AAGT
1 GAGAAAAAGAAAAAGAAGAA-T
70307843 GAGAAAAAGAAAAA-ACAGAAT
1 GAGAAAAAGAAAAAGA-AGAAT
*
70307864 -AGCAAAAGAGAGAGAAAAGAA-AGT
1 GAG--AAA-A-AGA-AAAAGAAGAAT
* *
70307888 GAG-AAAAGAAAAAGATGAAC
1 GAGAAAAAGAAAAAGAAGAAT
*
70307908 AAGAAAAAGAAAATAGAA
1 GAGAAAAAGAAAA-AGAA
70307926 AAAAAAGTTT
Statistics
Matches: 80, Mismatches: 8, Indels: 29
0.68 0.07 0.25
Matches are distributed among these distances:
19 8 0.10
20 17 0.21
21 31 0.39
22 10 0.12
23 1 0.01
24 5 0.06
25 7 0.09
26 1 0.01
ACGTcount: A:0.69, C:0.02, G:0.23, T:0.06
Consensus pattern (21 bp):
GAGAAAAAGAAAAAGAAGAAT
Found at i:70310958 original size:10 final size:10
Alignment explanation
Indices: 70310935--70310985 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
70310925 AGCTCACTTG
*
70310935 AGCTTGTTTC
1 AGCTTATTTC
*
70310945 AGCTTATTTG
1 AGCTTATTTC
*
70310955 AGCTCAATTT-
1 AGCT-TATTTC
70310965 AGCTTATTTCC
1 AGCTTATTT-C
70310976 AGCTTATTTC
1 AGCTTATTTC
70310986 TTTTACAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 4 0.12
10 17 0.50
11 13 0.38
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.47
Consensus pattern (10 bp):
AGCTTATTTC
Found at i:70310959 original size:30 final size:31
Alignment explanation
Indices: 70310925--70310984 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
70310915 AGCTCCAATC
* *
70310925 AGCTCACTTGAGCTTGTTT-CAGCTTATTTG
1 AGCTCAATTGAGCTTATTTCCAGCTTATTTG
*
70310955 AGCTCAATTTAGCTTATTTCCAGCTTATTT
1 AGCTCAATTGAGCTTATTTCCAGCTTATTT
70310985 CTTTTACAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 16 0.62
31 10 0.38
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (31 bp):
AGCTCAATTGAGCTTATTTCCAGCTTATTTG
Found at i:70317626 original size:43 final size:42
Alignment explanation
Indices: 70317571--70317662 Score: 107
Period size: 43 Copynumber: 2.1 Consensus size: 42
70317561 ATATCGTACA
** *
70317571 ATGCCAACGTCCCAGAC-GTGGTCTTACAT-GTAGCCACATATCG
1 ATGCC-ACGTCCCAGACTG-GGTCTTAC-TCGTAAACACAAATCG
70317614 ATGCCACTGTCCCAGACTGGGTCTTACTCGTAAACACAAATCG
1 ATGCCAC-GTCCCAGACTGGGTCTTACTCGTAAACACAAATCG
70317657 ATGCCA
1 ATGCCA
70317663 TGGACTTACT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
42 3 0.07
43 39 0.91
44 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (42 bp):
ATGCCACGTCCCAGACTGGGTCTTACTCGTAAACACAAATCG
Found at i:70320840 original size:27 final size:26
Alignment explanation
Indices: 70320810--70320882 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 26
70320800 TGGTGGCCAT
* *
70320810 GCCACAAATATCTGTTCTGTTGGCTCC
1 GCCAC-AATATCTGTTCTGGTGACTCC
*
70320837 GCCACAATATCTGTATCTGGTGACTCT
1 GCCACAATATCTGT-TCTGGTGACTCC
*
70320864 GTCACAATATCTGTTCTGG
1 GCCACAATATCTGTTCTGG
70320883 CAACCATGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
26 14 0.34
27 27 0.66
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTCC
Found at i:70324411 original size:30 final size:30
Alignment explanation
Indices: 70324377--70324437 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70324367 TCCTTAACTC
70324377 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
70324407 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
70324437 A
1 A
70324438 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:70327071 original size:43 final size:42
Alignment explanation
Indices: 70327022--70327169 Score: 197
Period size: 43 Copynumber: 3.5 Consensus size: 42
70327012 GTGATATACG
* * *
70327022 GGCTTCGGGCCTAGCAGGCTATAATCCCGGTGAAATTATATC
1 GGCTTCGAGCCTAGCAGGCTATAATACCGGTGAAATAATATC
* *
70327064 TGGCTTCGGGCCTAGCAGGCTATAATACCGGTGAGATAATATC
1 -GGCTTCGAGCCTAGCAGGCTATAATACCGGTGAAATAATATC
* *
70327107 GAGCCTCGAGCCTAGCAGGCTATAATACCGGTGAAATGATATC
1 G-GCTTCGAGCCTAGCAGGCTATAATACCGGTGAAATAATATC
*
70327150 GGGCTTCAAGCCTAGCAGGC
1 -GGCTTCGAGCCTAGCAGGC
70327170 GAAATGCTGG
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.01
43 92 0.98
44 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.28, T:0.23
Consensus pattern (42 bp):
GGCTTCGAGCCTAGCAGGCTATAATACCGGTGAAATAATATC
Found at i:70332937 original size:70 final size:70
Alignment explanation
Indices: 70332848--70332982 Score: 225
Period size: 70 Copynumber: 1.9 Consensus size: 70
70332838 TAGTTTATTA
* * * *
70332848 CTAATTAATTTGCTACTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
70332913 CTTAG
66 CTTAG
*
70332918 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
70332983 TTATGTGCTA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTACTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:70342665 original size:27 final size:26
Alignment explanation
Indices: 70342623--70342704 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
70342613 GTAGGAAGCA
70342623 TTCTGGTGGC-CATGCCACAAATATCTG
1 TTCTGGTGGCTC-TGCCAC-AATATCTG
70342650 TTCTGGTGGCTCTGCCACAATATCTG
1 TTCTGGTGGCTCTGCCACAATATCTG
* *
70342676 TATCTGGTGACTCTGTCACAATATCTG
1 T-TCTGGTGGCTCTGCCACAATATCTG
70342703 TT
1 TT
70342705 TTGGCAACCA
Statistics
Matches: 51, Mismatches: 2, Indels: 5
0.88 0.03 0.09
Matches are distributed among these distances:
26 10 0.20
27 40 0.78
28 1 0.02
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTG
Found at i:70344802 original size:7 final size:7
Alignment explanation
Indices: 70344790--70344840 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
70344780 TCACACACAT
70344790 TTTCAAA
1 TTTCAAA
70344797 TTTCAAA
1 TTTCAAA
* *
70344804 TAATCATCA
1 T-TTCA-AA
*
70344813 -TTCTAA
1 TTTCAAA
70344819 TTTCAAA
1 TTTCAAA
70344826 TTTCAAA
1 TTTCAAA
70344833 TTTCAAA
1 TTTCAAA
70344840 T
1 T
70344841 GATTTAGGGA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
6 1 0.03
7 30 0.86
8 3 0.09
9 1 0.03
ACGTcount: A:0.41, C:0.16, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTCAAA
Found at i:70356595 original size:43 final size:43
Alignment explanation
Indices: 70356529--70356615 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
70356519 ATATTGTACA
**
70356529 ATGCCAACGTCCCAGACGTGGTCTTACAT-GTAGCCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTAC-TCGTAAACACATATCG
70356572 ATGCC-ACTGTCCCAGAC-TGGGTCTTACTCGTAAACACATATCG
1 ATGCCAAC-GTCCCAGACGT-GGTCTTACTCGTAAACACATATCG
70356615 A
1 A
70356616 AAACACAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
42 4 0.10
43 35 0.90
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACTCGTAAACACATATCG
Found at i:70359760 original size:107 final size:107
Alignment explanation
Indices: 70359533--70359753 Score: 415
Period size: 107 Copynumber: 2.1 Consensus size: 107
70359523 CACAGCCAAC
*
70359533 ACACAAGCCCGTGTACCCTAGAAATGGCAACACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCAT
1 ACACACGCCCGTGTACCCTAGAAATGGCAACACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCAT
*
70359598 GCCAAACCTGTAGGGTATATTGACTTATGCCACACGACCATG
66 GCCAAACCTGTAGGGTATATTGACTTATACCACACGACCATG
70359640 ACACACGCCCGTGTACCCTAGAAATGGCAACACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCAT
1 ACACACGCCCGTGTACCCTAGAAATGGCAACACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCAT
*
70359705 GCCAAACCTGTAGGGTATATTGACTTATACCACACGGCCATG
66 GCCAAACCTGTAGGGTATATTGACTTATACCACACGACCATG
70359747 ACACACG
1 ACACACG
70359754 TTCGTGTGTT
Statistics
Matches: 111, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 111 1.00
ACGTcount: A:0.26, C:0.32, G:0.24, T:0.18
Consensus pattern (107 bp):
ACACACGCCCGTGTACCCTAGAAATGGCAACACACGCCCGTGTGCCAGGCCGTGTGCTAGGCCAT
GCCAAACCTGTAGGGTATATTGACTTATACCACACGACCATG
Found at i:70361041 original size:15 final size:15
Alignment explanation
Indices: 70361021--70361050 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70361011 GGTCACTGGG
70361021 CCTAATACTGGTATT
1 CCTAATACTGGTATT
70361036 CCTAATACTGGTATT
1 CCTAATACTGGTATT
70361051 GTGGGCCGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (15 bp):
CCTAATACTGGTATT
Found at i:70368802 original size:16 final size:16
Alignment explanation
Indices: 70368781--70368812 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
70368771 CATTACCCAC
*
70368781 ACTAGCTACTGAGGTA
1 ACTAGCTACTAAGGTA
70368797 ACTAGCTACTAAGGTA
1 ACTAGCTACTAAGGTA
70368813 GCTCTCGTGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (16 bp):
ACTAGCTACTAAGGTA
Found at i:70371717 original size:46 final size:46
Alignment explanation
Indices: 70371647--70371822 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
70371637 TGTAGCCCGC
* *
70371647 CCATAAGCGAACTCGGACTGAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
* * * * * *
70371693 CCATAAGTGAGCTCGGACTCAACTCAATGAGCTCGGATGCCTAG-TT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACG-TTAGCAT
* * * * * *
70371739 ACAT-CGCACGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCAT
1 CCATAAG--CGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
* *
70371786 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
70371823 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 68 0.66
47 33 0.32
48 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTAGCAT
Found at i:70371764 original size:93 final size:93
Alignment explanation
Indices: 70371654--70371826 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
70371644 CGCCCATAAG
* * *
70371654 CGAACTCGGACTGAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAGCTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70371719 ATGAGCTCGGATGCCTAGTTACATCGCA
66 ACGAGCTCGGATGCCTAGTTACATCGCA
* * *
70371747 CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
70371812 ACGAGTTCGGATGCC
66 ACGAGCTCGGATGCC
70371827 CAAATATCGT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCGCA
Found at i:70374243 original size:15 final size:15
Alignment explanation
Indices: 70374223--70374262 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
70374213 AAGAAAACCG
70374223 AATAAAGAAATCCAA
1 AATAAAGAAATCCAA
* *
70374238 AATAAAGAGATCCAG
1 AATAAAGAAATCCAA
*
70374253 GATAAAGAAA
1 AATAAAGAAA
70374263 CTTAAGATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.62, C:0.10, G:0.15, T:0.12
Consensus pattern (15 bp):
AATAAAGAAATCCAA
Found at i:70374337 original size:15 final size:15
Alignment explanation
Indices: 70374317--70374359 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
70374307 AGAGAAAACA
70374317 CAGAATAAAGAAATC
1 CAGAATAAAGAAATC
* *
70374332 CAGAATAATGAGATC
1 CAGAATAAAGAAATC
*
70374347 CAGGATAAAGAAA
1 CAGAATAAAGAAA
70374360 CCCAAGATAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.56, C:0.12, G:0.19, T:0.14
Consensus pattern (15 bp):
CAGAATAAAGAAATC
Found at i:70374388 original size:97 final size:97
Alignment explanation
Indices: 70374214--70374420 Score: 346
Period size: 97 Copynumber: 2.2 Consensus size: 97
70374204 AAAGATAACA
**
70374214 AGAAAAC-C-GAATAAAGAAATCCAAAATAAAGAGATCCAGGATAAAGAAACTTAAGATACGATA
1 AGAAAACACAGAATAAAGAAATCCAAAATAAAGAGATCCAGGATAAAGAAACCCAAGATACGATA
* *
70374277 CTATGCCGGAGAATCGAAAACCAAACTCATAG
66 CTATGCCAGAGAATCAAAAACCAAACTCATAG
* *
70374309 AGAAAACACAGAATAAAGAAATCCAGAATAATGAGATCCAGGATAAAGAAACCCAAGATACGATA
1 AGAAAACACAGAATAAAGAAATCCAAAATAAAGAGATCCAGGATAAAGAAACCCAAGATACGATA
70374374 CTATGCCAGAGAATCAAAAACCAAACTCATAG
66 CTATGCCAGAGAATCAAAAACCAAACTCATAG
70374406 AGAAAACACAGAATA
1 AGAAAACACAGAATA
70374421 CCCCGATAAT
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
95 7 0.07
96 1 0.01
97 96 0.92
ACGTcount: A:0.53, C:0.17, G:0.16, T:0.14
Consensus pattern (97 bp):
AGAAAACACAGAATAAAGAAATCCAAAATAAAGAGATCCAGGATAAAGAAACCCAAGATACGATA
CTATGCCAGAGAATCAAAAACCAAACTCATAG
Found at i:70377454 original size:46 final size:46
Alignment explanation
Indices: 70377282--70377457 Score: 155
Period size: 46 Copynumber: 3.8 Consensus size: 46
70377272 TGTAACCCGC
* **
70377282 CCATAAGTGAACTCGGACTCAACTCAACGAGCTTAG-ATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGAACATTCGCAT
* * * *
70377328 CCATAAGTGAACTCGGACTCAACTCAACGTGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCAT
* * **
70377378 -C-TCA-CGAACTCGGACTCAACTCAATTAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
*
70377421 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAA
70377458 TGCCCAAATA
Statistics
Matches: 100, Mismatches: 20, Indels: 20
0.71 0.14 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 59 0.59
47 22 0.22
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
Found at i:70377461 original size:93 final size:93
Alignment explanation
Indices: 70377290--70377461 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
70377280 GCCCATAAGT
** *
70377290 GAACTCGGACTCAACTCAACGAGCTTAGATGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
* *
70377355 CGTGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGAATGCCTAGTTACATCTCAC
** *
70377383 GAACTCGGACTCAACTCAATTAG-TTCGAACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTTAG-ACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
*
70377447 ACGAGTTCGAATGCC
65 ACGAGCTCGAATGCC
70377462 CAAATATCGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
92 3 0.04
93 66 0.96
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGAATGCCTAGTTACATCTCAC
Found at i:70380461 original size:28 final size:28
Alignment explanation
Indices: 70380421--70380476 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
70380411 TTTGAGGTAA
70380421 GTTGGTATGATAATAATACTGAAATAAT
1 GTTGGTATGATAATAATACTGAAATAAT
*
70380449 GTTGGTATGATAATAATACTGCAATAAT
1 GTTGGTATGATAATAATACTGAAATAAT
70380477 ATTGTAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (28 bp):
GTTGGTATGATAATAATACTGAAATAAT
Found at i:70381061 original size:67 final size:64
Alignment explanation
Indices: 70380878--70381104 Score: 224
Period size: 68 Copynumber: 3.5 Consensus size: 64
70380868 ATACAGATGG
** * * * * **
70380878 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATTATGT-GTACAAGAGAGCTACGAGACA
1 TATGTAGCTAGGTCACATGGGTGGTACTATGAGGACACCATGTAG-ACAAGAGAGCTACGA-A-A
70380942 TTA
63 -TA
* * * *
70380945 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAAATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGAGGACACCATGTAGACAAGAGAGCTACGAAATA
* * *
70381010 TATGTAGCTAGGTCACATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-AGGACACCATGTAGACAAGAGAGCTACGAAA
70381075 TA
63 TA
*
70381077 AAT-TAGCTAGGTCACATGGGTGGTACTA
1 TATGTAGCTAGGTCACATGGGTGGTACTA
70381105 AGTGTTCACC
Statistics
Matches: 136, Mismatches: 19, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.18
65 3 0.02
66 26 0.19
67 34 0.25
68 48 0.35
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGAGGACACCATGTAGACAAGAGAGCTACGAAATA
Found at i:70384372 original size:27 final size:27
Alignment explanation
Indices: 70384342--70384573 Score: 304
Period size: 27 Copynumber: 8.6 Consensus size: 27
70384332 TTAGTTTACC
70384342 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
70384369 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70384396 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** **
70384423 AAATTACTAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
70384450 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
70384477 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
70384504 AAATTATCAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
70384530 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
**
70384557 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
70384574 TCGACCTGTA
Statistics
Matches: 174, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 24 0.14
27 150 0.86
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:70384626 original size:27 final size:26
Alignment explanation
Indices: 70384342--70384626 Score: 230
Period size: 27 Copynumber: 10.6 Consensus size: 26
70384332 TTAGTTTACC
*
70384342 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* ** *
70384369 AAATTACTAAAATACCCTTAGTTTATA
1 AAATTACCAAAATACCCCGA-TTTGTA
* *
70384396 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* ** * **
70384423 AAATTACTAAAATACCATTGGTTTACA
1 AAATTACCAAAATACC-CCGATTTGTA
*
70384450 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
70384477 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCC-GATTTGTA
* *
70384504 AAATTATCAAAATA-CCCTAGTTTGTA
1 AAATTACCAAAATACCCCGA-TTTGTA
*
70384530 AAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCC-GATTTGTA
** **
70384557 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*** *
70384584 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCC-CGATTTGTA
*
70384611 AAATTACCAAAGTACC
1 AAATTACCAAAATACC
70384627 TTTGATTTAC
Statistics
Matches: 206, Mismatches: 43, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
26 22 0.11
27 182 0.88
28 2 0.01
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (26 bp):
AAATTACCAAAATACCCCGATTTGTA
Found at i:70384680 original size:27 final size:27
Alignment explanation
Indices: 70384449--70384682 Score: 147
Period size: 27 Copynumber: 8.7 Consensus size: 27
70384439 ATTGGTTTAC
* * *
70384449 AAAATTACCAAAATACCC-CTAGTTTGT
1 AAAATTATCGAAATACCCTCGA-TTTGT
* * *
70384476 AAAATTACCAAAATACCC-CTGGTTTGT
1 AAAATTATCGAAATACCCTC-GATTTGT
* *
70384503 AAAATTATCAAAATACCCTAG-TTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* *
70384529 AAAATTACCAAAATACCC-CTGATTTGT
1 AAAATTATCGAAATACCCTC-GATTTGT
* **
70384556 GAAATTA-CTGAAATACCCTCGACCTGT
1 AAAATTATC-GAAATACCCTCGATTTGT
* *
70384583 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTATCGAAATACCCTCGATTTGT
* * * **
70384610 AAAATTA-CCAAAGTACCTTTGATTTAC
1 AAAATTATCGAAA-TACCCTCGATTTGT
* *** **
70384637 AGAATTATCGTTTTACCCTCGATTTAC
1 AAAATTATCGAAATACCCTCGATTTGT
70384664 AAAATTATCGAAATACCCT
1 AAAATTATCGAAATACCCT
70384683 TGTAGGGTAG
Statistics
Matches: 167, Mismatches: 31, Indels: 18
0.77 0.14 0.08
Matches are distributed among these distances:
26 27 0.16
27 138 0.83
28 2 0.01
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTATCGAAATACCCTCGATTTGT
Found at i:70384702 original size:27 final size:27
Alignment explanation
Indices: 70384666--70384887 Score: 284
Period size: 27 Copynumber: 8.3 Consensus size: 27
70384656 CGATTTACAA
* *
70384666 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70384693 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
70384720 AATTACCGAAATACCCCTATAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
70384747 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
70384774 AATTATCGCAATACCCCTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
70384801 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
70384828 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
70384855 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
70384881 AATTACC
1 AATTACC
70384888 ATTTTGCCCC
Statistics
Matches: 169, Mismatches: 26, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
26 16 0.09
27 153 0.91
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:70385366 original size:22 final size:22
Alignment explanation
Indices: 70385314--70385378 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
70385304 TTAAAGCCTT
* * *
70385314 CTGATCATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
70385336 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
70385358 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
70385379 ACATATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:70385567 original size:27 final size:27
Alignment explanation
Indices: 70385537--70385638 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
70385527 ATTCTGTTAA
* *
70385537 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
70385564 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
* *
70385591 GTGGCTCCGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
70385618 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
70385639 ATAACTGAGC
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.79
28 6 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:70385806 original size:6 final size:6
Alignment explanation
Indices: 70385775--70385856 Score: 62
Period size: 6 Copynumber: 13.3 Consensus size: 6
70385765 TTGCATTCAC
* *
70385775 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
70385824 -TCACCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
70385857 AATGTTTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 48 0.80
7 6 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70385854 original size:31 final size:31
Alignment explanation
Indices: 70385775--70385847 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
70385765 TTGCATTCAC
* * *
70385775 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
*
70385806 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTCACCTAATACTG
70385837 ATTCTGATTCT
1 ATTCTGATTCT
70385848 AGTTCTGATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTAATACTG
Found at i:70398591 original size:14 final size:14
Alignment explanation
Indices: 70398572--70398601 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
70398562 CTACACGATG
70398572 TTTTTTCTTCCTCCT
1 TTTTTTC-TCCTCCT
70398587 TTTTTTCTCCTCCT
1 TTTTTTCTCCTCCT
70398601 T
1 T
70398602 CTTGCATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTTTTCTCCTCCT
Found at i:70400136 original size:30 final size:30
Alignment explanation
Indices: 70400080--70400137 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
70400070 TTTGAGCTTT
*
70400080 GGGGCAAAAGTGTAAATATGTGAAAGTTTA
1 GGGGCAAAAGTGTAAATATGTCAAAGTTTA
* *
70400110 GGGGCAAAA-TGGTAATTTTGTCAAAGTT
1 GGGGCAAAAGT-GTAAATATGTCAAAGTT
70400138 CGTTCTTGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 23 0.96
ACGTcount: A:0.36, C:0.05, G:0.29, T:0.29
Consensus pattern (30 bp):
GGGGCAAAAGTGTAAATATGTCAAAGTTTA
Found at i:70400611 original size:46 final size:45
Alignment explanation
Indices: 70400538--70400713 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 45
70400528 TATTTGGGCA
*
70400538 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * * *
70400584 TCCGAGCTCGTTGAGTTGAGTGCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAAC---G
* *
70400629 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGTGAATG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAACG
* * *
70400677 CCCAAGATCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
70400714 GCGAGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 3 0.03
43 4 0.04
45 3 0.03
46 61 0.57
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.31, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAACG
Found at i:70400693 original size:93 final size:93
Alignment explanation
Indices: 70400534--70400705 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
70400524 AGGATATTTG
* * * * *
70400534 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCAAGATCGTTGAG
*
70400599 TTGAGTGCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
70400627 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGTGAATGCCCAAGATCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCAAGATCGTTGAG
70400692 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
70400706 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGACGCGAACGCCCAAGATCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:70405778 original size:48 final size:49
Alignment explanation
Indices: 70405702--70405835 Score: 177
Period size: 48 Copynumber: 2.8 Consensus size: 49
70405692 TATCATGGTT
*
70405702 ATACGTGTAACGTGGTGCTAAGTGGATATACCACGA-TTACACATACTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTACACATACTG
* * * * *
70405750 ATACATGTAACGTGGTGGTAAATGGATATGCCAC-AGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTACACATACTG
*
70405798 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACG-GTTA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTA
70405836 TACGTGTAAC
Statistics
Matches: 74, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
47 29 0.39
48 45 0.61
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (49 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGAGTTACACATACTG
Found at i:70405855 original size:38 final size:38
Alignment explanation
Indices: 70405804--70405876 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
70405794 ATTGATTCAT
*
70405804 TAACGTGGTGCTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCAAGGTTATACGTG
*
70405842 TAACGTGGTGCTAAGTGGATATGCCAAGGTTATAC
1 TAACGTGGTGCTAAGTGGATATACCAAGGTTATAC
70405877 ATGTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCAAGGTTATACGTG
Found at i:70415199 original size:24 final size:24
Alignment explanation
Indices: 70415119--70415208 Score: 81
Period size: 24 Copynumber: 3.8 Consensus size: 24
70415109 TCTATGATGT
* **
70415119 CTTTGTGGCATATTTTGTAAACAC
1 CTTTGTGGCATATTCTGTAAATGC
* * *
70415143 CTTTATGACATATTTTGTAAATGC
1 CTTTGTGGCATATTCTGTAAATGC
* ** *
70415167 CCTACTGGCGTATTCTGTAAATGC
1 CTTTGTGGCATATTCTGTAAATGC
*
70415191 CTTTGTGGCTTATTCTGT
1 CTTTGTGGCATATTCTGT
70415209 GTTACCTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 52 1.00
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (24 bp):
CTTTGTGGCATATTCTGTAAATGC
Found at i:70417567 original size:21 final size:21
Alignment explanation
Indices: 70417520--70417567 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
70417510 TCCTAGGGTG
*
70417520 TAAATTGAATTCAATTGAATAT
1 TAAA-TGAATTAAATTGAATAT
*
70417542 GAAATGAATTAAATTG-ATGAT
1 TAAATGAATTAAATTGAAT-AT
70417563 TAAAT
1 TAAAT
70417568 TCATTTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 2 0.09
21 17 0.77
22 3 0.14
ACGTcount: A:0.48, C:0.02, G:0.12, T:0.38
Consensus pattern (21 bp):
TAAATGAATTAAATTGAATAT
Found at i:70417718 original size:22 final size:21
Alignment explanation
Indices: 70417693--70417733 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
70417683 ATTGTGTATA
*
70417693 GTTATATGCTTGTATTGAATGT
1 GTTATATGATTGTA-TGAATGT
*
70417715 GTTATGTGATTGTATGAAT
1 GTTATATGATTGTATGAAT
70417734 TATAAATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (21 bp):
GTTATATGATTGTATGAATGT
Found at i:70419062 original size:46 final size:46
Alignment explanation
Indices: 70418963--70419174 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 46
70418953 GATATGTGTA
* * *
70418963 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATA-A-G--AC
1 CTAGTGTAAGACATGTCTGGGACATGCATCAG---CATTA-AGACGAAAG
*
70419009 CTAGTGTAAGACATATCTGGGACATGCATCAGCATTAAGACGAAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAAGACGAAAG
* * * * *
70419055 CTTGTGTAAGACATGTTTGGGACATGCATCGGTATTAAGACGAGAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAAGACGAAAG
* * ** **
70419101 CTAGTGTAAGACATGTCTGGGACATGCATCGGCGTCGAGATATACAAG
1 CTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAAGA-CGA-AAG
*
70419149 CTAGTGTAAGACCTGTCTGGGACATG
1 CTAGTGTAAGACATGTCTGGGACATG
70419175 GTATTGACTT
Statistics
Matches: 140, Mismatches: 20, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.01
43 6 0.04
44 1 0.01
46 104 0.74
47 1 0.01
48 27 0.19
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (46 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCAGCATTAAGACGAAAG
Found at i:70426178 original size:18 final size:19
Alignment explanation
Indices: 70426134--70426180 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
70426124 AGTTATAAAA
70426134 AAAAAGAAATACGAAATTAT
1 AAAAA-AAATACGAAATTAT
*
70426154 AAAAAAAATACGAAGTTAT
1 AAAAAAAATACGAAATTAT
70426173 AAAAAAAA
1 AAAAAAAA
70426181 GTGAAGTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 21 0.81
20 5 0.19
ACGTcount: A:0.70, C:0.04, G:0.09, T:0.17
Consensus pattern (19 bp):
AAAAAAAATACGAAATTAT
Found at i:70429367 original size:20 final size:21
Alignment explanation
Indices: 70429320--70429367 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
70429310 ATTTTGTCCA
*
70429320 AATTA-GTTAAGTTGTTATTT
1 AATTATGTTAAGTTGCTATTT
*
70429340 AAGT-TGTT-AGTTGCTATTT
1 AATTATGTTAAGTTGCTATTT
70429359 AATTATGTT
1 AATTATGTT
70429368 TATATGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.27, C:0.02, G:0.17, T:0.54
Consensus pattern (21 bp):
AATTATGTTAAGTTGCTATTT
Found at i:70431137 original size:19 final size:19
Alignment explanation
Indices: 70431113--70431152 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
70431103 TCATTTTGGA
70431113 GAATGTCATTTGAGAAGTG
1 GAATGTCATTTGAGAAGTG
70431132 GAATGTCATTTGAGAAGTG
1 GAATGTCATTTGAGAAGTG
70431151 GA
1 GA
70431153 GCCTGTTACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.33, T:0.30
Consensus pattern (19 bp):
GAATGTCATTTGAGAAGTG
Found at i:70436355 original size:39 final size:39
Alignment explanation
Indices: 70436310--70436430 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
70436300 AAGCAAGACA
70436310 CTGGAAATGTATCCAGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCAGGCTAAAGACCCGCAGGCTTCGTG
**
70436349 CTGGAAATGTATCTGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCAGGCTAAAGACCCGCAGGCTTCGTG
* *
70436388 CTGGAAATGTATCCAGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCAGGCTAAAGACCCGCAGGCTTCGTG
70436427 CTGG
1 CTGG
70436431 TAACATAATT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.23, C:0.24, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCAGGCTAAAGACCCGCAGGCTTCGTG
Found at i:70442208 original size:27 final size:27
Alignment explanation
Indices: 70442178--70442352 Score: 199
Period size: 27 Copynumber: 6.4 Consensus size: 27
70442168 ATTGTACAGA
*
70442178 ACTAAGTGTGCGATTTGACTATGTTGC
1 ACTAAGTGTGCGATTTGACTATGTAGC
** *
70442205 ACTAAGTGTGCGAAATGAATATG-ATGC
1 ACTAAGTGTGCGATTTGACTATGTA-GC
* * **
70442232 ACTAAGTGTGCGAATTGACCATGCGGC
1 ACTAAGTGTGCGATTTGACTATGTAGC
70442259 ACTAAGTGTGCGAGTTTGACTATGTAGC
1 ACTAAGTGTGCGA-TTTGACTATGTAGC
* *
70442287 ACTAAGTGTGCGATTTGATTACGTAGC
1 ACTAAGTGTGCGATTTGACTATGTAGC
* * *
70442314 ACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGATTTGACTATGTAGC
*
70442341 ACTGAGTGTGCG
1 ACTAAGTGTGCG
70442353 GACTCAATAT
Statistics
Matches: 127, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
ACTAAGTGTGCGATTTGACTATGTAGC
Found at i:70442289 original size:82 final size:81
Alignment explanation
Indices: 70442178--70442331 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
70442168 ATTGTACAGA
* *
70442178 ACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTG
1 ACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTGTG
70442242 CGAATTGACCATGCGGC
65 CGAATTGACCATGCGGC
** *
70442259 ACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTG
1 ACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTG
*
70442324 CGAGTTGA
65 CGAATTGA
70442332 TTATATAGCA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 13 0.20
82 51 0.78
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
ACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGTGC
GAATTGACCATGCGGC
Found at i:70442343 original size:82 final size:81
Alignment explanation
Indices: 70442172--70442352 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
70442162 GATTAAATTG
* * *
70442172 TACAGAACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70442237 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70442253 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70442317 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70442335 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70442353 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70450121 original size:27 final size:27
Alignment explanation
Indices: 70450090--70450267 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
70450080 TAAATTGTAC
70450090 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
70450117 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
70450143 ATGCACTAAGTGTGCGAATTGACCATGT
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
70450171 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
70450199 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
70450226 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
70450253 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70450268 GACTCAATAT
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:70450204 original size:82 final size:81
Alignment explanation
Indices: 70450091--70450246 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70450081 AAATTGTACA
* *
70450091 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70450155 TGCGAATTGACCATGTG
65 TGCGAATTGACCATGTG
** *
70450172 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70450237 TGCGAGTTGA
65 TGCGAATTGA
70450247 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGTG
Found at i:70450258 original size:82 final size:81
Alignment explanation
Indices: 70450090--70450267 Score: 232
Period size: 82 Copynumber: 2.2 Consensus size: 81
70450080 TAAATTGTAC
* *
70450090 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTG
1 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
70450155 TGCGAATTGACCATGT
66 TGCGAATTGACCATAT
* ** *
70450171 GGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAG
1 AGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAG
* **
70450235 TGTGCGAGTTGATTATAT
64 TGTGCGAATTGACCATAT
*
70450253 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70450268 GACTCAATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
81 16 0.19
82 67 0.81
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
TGCGAATTGACCATAT
Found at i:70454399 original size:39 final size:39
Alignment explanation
Indices: 70454315--70454473 Score: 248
Period size: 39 Copynumber: 4.1 Consensus size: 39
70454305 AAGTAAGACA
*
70454315 CTGGAAATGTATCCGGGCTAAA-ACCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* * *
70454353 CTAGAAATGTATCTGGGCTAAAGACCTGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
70454392 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
70454431 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
70454470 CTGG
1 CTGG
70454474 TAACATAATT
Statistics
Matches: 111, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
38 20 0.18
39 91 0.82
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:70460620 original size:39 final size:39
Alignment explanation
Indices: 70460575--70460656 Score: 137
Period size: 39 Copynumber: 2.1 Consensus size: 39
70460565 AAGCAAGACA
*
70460575 CTGGAAATGTATCCCGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCCGGCTAAAGTCCCGCAAGCTTCGTG
* *
70460614 CTGGAAATGTATCCGGGCTAAAGTCCCGCAAGCTTTGTG
1 CTGGAAATGTATCCCGGCTAAAGTCCCGCAAGCTTCGTG
70460653 CTGG
1 CTGG
70460657 TAACATAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCCGGCTAAAGTCCCGCAAGCTTCGTG
Found at i:70465290 original size:21 final size:21
Alignment explanation
Indices: 70465264--70465307 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
70465254 TAGATGATTC
70465264 AAATGTATAAATATATGTTTG
1 AAATGTATAAATATATGTTTG
70465285 AAATGTATAAATATATGTTTG
1 AAATGTATAAATATATGTTTG
70465306 AA
1 AA
70465308 TGTGTATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
AAATGTATAAATATATGTTTG
Found at i:70468020 original size:28 final size:28
Alignment explanation
Indices: 70467973--70468063 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
70467963 GTGACAGAGT
*
70467973 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAG-TACAGATAATTTGTGGCAGTGC
*
70468002 CACCAGTACAGATAATTTGTGGCAGGGC
1 CACCAGTACAGATAATTTGTGGCAGTGC
* *
70468030 CACCGGAACAGATAATTTGTGGCA-TAGC
1 CACCAGTACAGATAATTTGTGGCAGT-GC
70468058 CACCAG
1 CACCAG
70468064 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 49 0.89
29 6 0.11
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (28 bp):
CACCAGTACAGATAATTTGTGGCAGTGC
Found at i:70468216 original size:28 final size:28
Alignment explanation
Indices: 70468169--70468233 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
70468159 AAATTAACCC
*
70468169 TAGGGGTATAAAGGTCATTTAGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
70468197 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
70468225 TAGGGGTAT
1 TAGGGGTAT
70468234 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.08, G:0.28, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:70472090 original size:27 final size:27
Alignment explanation
Indices: 70472060--70472208 Score: 217
Period size: 27 Copynumber: 5.4 Consensus size: 27
70472050 TTAAGTCCGA
* *
70472060 ACACTCAGTGCTATATAGTCAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGC
*
70472087 ACACTTAGTGCTACATAATCAAACTCGC
1 ACACTTAGTGCTACATAGTC-AACTCGC
*
70472115 ACACTTAGTGCTACATAGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAACTCGC
* *
70472142 ACACTTAGTGCAACATAGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAACTCGC
*
70472169 ACACTTAGTGCTACATATTCCAACTCGC
1 ACACTTAGTGCTACATAGT-CAACTCGC
70472197 ACACTTAGTGCT
1 ACACTTAGTGCT
70472209 GTACAATTTA
Statistics
Matches: 111, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
27 66 0.59
28 45 0.41
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (27 bp):
ACACTTAGTGCTACATAGTCAACTCGC
Found at i:70472127 original size:55 final size:54
Alignment explanation
Indices: 70472060--70472208 Score: 217
Period size: 55 Copynumber: 2.7 Consensus size: 54
70472050 TTAAGTCCGA
* *
70472060 ACACTCAGTGCTATATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATC-AACTCGC
* * * *
70472115 ACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCAACATAGTCAATTCGC
1 ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGC
*
70472169 ACACTTAGTGCTACATATTCCAACTCGCACACTTAGTGCT
1 ACACTTAGTGCTACATAGT-CAACTCGCACACTTAGTGCT
70472209 GTACAATTTA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
54 24 0.29
55 60 0.71
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (54 bp):
ACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAACTCGC
Found at i:70474572 original size:17 final size:17
Alignment explanation
Indices: 70474547--70474579 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
70474537 ACATATCCAA
70474547 TAAAGCCCGATAAATGT
1 TAAAGCCCGATAAATGT
*
70474564 TAAATCCCGATAAATG
1 TAAAGCCCGATAAATG
70474580 ATTGAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.42, C:0.18, G:0.15, T:0.24
Consensus pattern (17 bp):
TAAAGCCCGATAAATGT
Found at i:70482452 original size:40 final size:43
Alignment explanation
Indices: 70482382--70482541 Score: 120
Period size: 44 Copynumber: 3.8 Consensus size: 43
70482372 TGTGTTTCAA
* * *
70482382 AATAGCTTCGGCT-ATAAAT-A-ACACTTAGTGTGCGA-ATTAG
1 AATAGCTTCGGCTAAT-AATGAGGCACTAAGTGTGCGACATCAG
*
70482422 AATAGCTTCGGCT-AT-ATGAGGCACTAAGTGTGCGACA-CCG
1 AATAGCTTCGGCTAATAATGAGGCACTAAGTGTGCGACATCAG
* ** *
70482462 AGATAGCTTCGGTTAA-ATATGATGGCACTAAGTGTGCGAGGTCAT
1 A-ATAGCTTCGGCTAATA-ATGA-GGCACTAAGTGTGCGACATCAG
* * *
70482507 TATAGCTTCGGCTAATCACTGATGCACTAAGTGTG
1 AATAGCTTCGGCTAAT-AATGAGGCACTAAGTGTG
70482542 TGAGTTCTTA
Statistics
Matches: 96, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
38 2 0.02
39 1 0.01
40 30 0.31
41 12 0.12
42 1 0.01
43 4 0.04
44 41 0.43
45 4 0.04
46 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.28
Consensus pattern (43 bp):
AATAGCTTCGGCTAATAATGAGGCACTAAGTGTGCGACATCAG
Found at i:70482512 original size:44 final size:43
Alignment explanation
Indices: 70482423--70482541 Score: 129
Period size: 44 Copynumber: 2.8 Consensus size: 43
70482413 GCGAATTAGA
70482423 ATAGCTTCGGCT-ATATGA-GGCACTAAGTGTGCGACACCGAG
1 ATAGCTTCGGCTAATATGATGGCACTAAGTGTGCGACACCGAG
* *** *
70482464 ATAGCTTCGGTTAAATATGATGGCACTAAGTGTGCGAGGTC-ATT
1 ATAGCTTCGGCT-AATATGATGGCACTAAGTGTGCGACACCGA-G
70482508 ATAGCTTCGGCTAATCACTGAT-GCACTAAGTGTG
1 ATAGCTTCGGCTAAT-A-TGATGGCACTAAGTGTG
70482542 TGAGTTCTTA
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
41 11 0.17
43 10 0.15
44 41 0.62
45 4 0.06
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
ATAGCTTCGGCTAATATGATGGCACTAAGTGTGCGACACCGAG
Found at i:70485538 original size:40 final size:40
Alignment explanation
Indices: 70485471--70485646 Score: 227
Period size: 39 Copynumber: 4.5 Consensus size: 40
70485461 CACTCGAATA
* *
70485471 CCTTC-GGACATAGCCCAGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
*
70485510 CCTTCGGGACTTAGCCCGGATA-TGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
70485550 CCTTCGGG-CTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
* ** *
70485589 CCTTCGGG-CTTAGCCCGGAATTAGCCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
70485628 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70485647 TTATCAATCC
Statistics
Matches: 125, Mismatches: 9, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 75 0.60
40 49 0.39
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:70485645 original size:79 final size:79
Alignment explanation
Indices: 70485471--70485646 Score: 241
Period size: 79 Copynumber: 2.2 Consensus size: 79
70485461 CACTCGAATA
* * * *
70485471 CCTTCGGACATAGCCCAGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATGGT
1 CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGC
*
70485536 AACTCGCACAAATG
66 AACTAGCACAAATG
*
70485550 CCTTCGGGCTTAGCCCGGA-ACTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATTA
1 CCTTCGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TA
*
70485612 GCCACTAGCACAAATG
64 GCAACTAGCACAAATG
70485628 CCTTCAGGACTTAGCCCGG
1 CCTTC-GGACTTAGCCCGG
70485647 TTATCAATCC
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
77 1 0.01
78 31 0.36
79 54 0.63
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (79 bp):
CCTTCGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGC
AACTAGCACAAATG
Found at i:70492924 original size:16 final size:16
Alignment explanation
Indices: 70492885--70492929 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
70492875 ATACATTGAG
70492885 ATATAAAAATTATTATT
1 ATATAAAAATT-TTATT
*
70492902 -T-TTAAAATTTTATT
1 ATATAAAAATTTTATT
70492916 ATATAAAAATTTTA
1 ATATAAAAATTTTA
70492930 AATATATATT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 5 0.21
15 8 0.33
16 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATAAAAATTTTATT
Found at i:70498372 original size:55 final size:55
Alignment explanation
Indices: 70498208--70498815 Score: 752
Period size: 55 Copynumber: 10.9 Consensus size: 55
70498198 TTTAAATTTT
*
70498208 TTTGGTGCTGGCCTGTCAATAGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTT--AAAAAAAAAA
* *
70498265 TTTGGTGCTGGCATGTCAATGGCCGACACCAAAATACGAGTTTTTTTTAAAAAAAAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAG---TTTTTAAAAAAAAAA
* * * **
70498323 TTTTGTGCTGGCCCGTCAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAATTA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAA
* * * * * * *
70498378 TTTAGTGCTAGCATGTCAATGGGCGGCACTATAATACGAGTTTTTAAAAAAAGAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAA
** * *
70498433 TTTGGTGCTGGCCTAACAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAATTTA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAA--AA
* * * **
70498490 TTTGGTGCTGGCCTGTCAATGGTCGACACCAAAATACAAGTTTTT-TTAAAAAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAA
*
70498544 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAAATTA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAA--A
* * **
70498601 TTTGGTGCTGGCCTGTCAATGGTCAGCACCAAAATAAAAGTTTTT-AAAAAAAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAA
* * ** *
70498655 TTTGGTGTTGGCCTGTCAATGGCCGGCACCAAAATATGAGTTTTTTTTTGAAAAAAAC
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAG---TTTTTAAAAAAAAAA
* * **
70498713 TTTGGTGTTGGCCTGTCAATGGCCAGCACCAAAATACGAGTTTTTTTAAAAAAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAA
70498768 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAA
70498816 TTTTTTTTTA
Statistics
Matches: 473, Mismatches: 66, Indels: 26
0.84 0.12 0.05
Matches are distributed among these distances:
54 78 0.16
55 164 0.35
56 13 0.03
57 123 0.26
58 90 0.19
60 5 0.01
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (55 bp):
TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAA
Found at i:70498577 original size:111 final size:110
Alignment explanation
Indices: 70498208--70498815 Score: 758
Period size: 111 Copynumber: 5.4 Consensus size: 110
70498198 TTTAAATTTT
* * **
70498208 TTTGGTGCTGGCCTGTCAATAGCCGGCACCAAAATACGAGTTTTTAAAAAAAAAAAATTTGGTGC
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTT-AAAAAAAATTATTTGGTGC
* *
70498273 TGGCATGTCAATGGCCGACACCAAAATACGAGTTTTTTTTAAAAAAAAAA
65 TGGCCTGTCAATGGTCGACACCAAAATACGAG-TTTTTTT---AAAAAAA
* * *
70498323 TTTTGTGCTGGCCCGTCAATGGCCGGCACCAAAATACGGGTTTTT-AAAAAAATTATTTAGTGCT
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAATTATTTGGTGCT
* * * * * * **
70498387 AGCATGTCAATGGGCGGCACTATAATACGAGTTTTTAAAAAAAGAA
66 GGCCTGTCAATGGTCGACACCAAAATACGAGTTTTTTTAAAAA-AA
**
70498433 TTTGGTGCTGGCCTAACAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAATTTATTTGGTGC
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAA-TTATTTGGTGC
*
70498498 TGGCCTGTCAATGGTCGACACCAAAATACAAGTTTTTTTAAAAAAA
65 TGGCCTGTCAATGGTCGACACCAAAATACGAGTTTTTTTAAAAAAA
70498544 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAAATTATTTGGTGC
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTT-AAAAAAAATTATTTGGTGC
** **
70498609 TGGCCTGTCAATGGTC-AGCACCAAAATAAAAGTTTTTAAAAAAAAA
65 TGGCCTGTCAATGGTCGA-CACCAAAATACGAGTTTTTTTAAAAAAA
* * * * *
70498655 TTTGGTGTTGGCCTGTCAATGGCCGGCACCAAAATATGAGTTTTTTTTTGAAAAAAA--CTTTGG
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACG-G---GTTTTTAAAAAAAATTATTTGG
* *
70498718 TGTTGGCCTGTCAATGG-CCAGCACCAAAATACGAGTTTTTTTAAAAAAAA
62 TGCTGGCCTGTCAATGGTCGA-CACCAAAATACGAGTTTTTTT-AAAAAAA
*
70498768 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGAGTTTTTAAA
1 TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTTAAA
70498816 TTTTTTTTTA
Statistics
Matches: 434, Mismatches: 48, Indels: 28
0.85 0.09 0.05
Matches are distributed among these distances:
109 12 0.03
110 44 0.10
111 141 0.32
112 99 0.23
113 85 0.20
114 7 0.02
115 46 0.11
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (110 bp):
TTTGGTGCTGGCCTGTCAATGGCCGGCACCAAAATACGGGTTTTTAAAAAAAATTATTTGGTGCT
GGCCTGTCAATGGTCGACACCAAAATACGAGTTTTTTTAAAAAAA
Found at i:70505655 original size:40 final size:40
Alignment explanation
Indices: 70505609--70505689 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
70505599 TTAACCCAAA
70505609 ACGAATTGTATTTGTTATGTATAAAGACTAAAGAGCGAAG
1 ACGAATTGTATTTGTTATGTATAAAGACTAAAGAGCGAAG
70505649 ACGAATTGTATTTGTTATGTATAAAGACTAAAGAGCGAAG
1 ACGAATTGTATTTGTTATGTATAAAGACTAAAGAGCGAAG
70505689 A
1 A
70505690 TAATAAAGAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (40 bp):
ACGAATTGTATTTGTTATGTATAAAGACTAAAGAGCGAAG
Found at i:70505901 original size:18 final size:17
Alignment explanation
Indices: 70505862--70505895 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70505852 ATTATTTTTT
*
70505862 TACAATTAAACTATAAA
1 TACAATTAAAATATAAA
70505879 TACAATTACAAATATAA
1 TACAATTA-AAATATAA
70505896 TCACAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (17 bp):
TACAATTAAAATATAAA
Found at i:70507879 original size:19 final size:18
Alignment explanation
Indices: 70507847--70507882 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
70507837 TTTTACTTTC
*
70507847 ACCCTAAAACTTTTACTA
1 ACCCTAAAAATTTTACTA
70507865 ACCCTAAAAAATTTTACT
1 ACCCT-AAAAATTTTACT
70507883 TCCTCCAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.33
Consensus pattern (18 bp):
ACCCTAAAAATTTTACTA
Done.