Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 221 of 295
Found at i:70508587 original size:40 final size:40
Alignment explanation
Indices: 70508532--70508611 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
70508522 AGTTATAGTT
70508532 ATTCGAATATATTGTTTGTAATTACAATTGTGACTATATG
1 ATTCGAATATATTGTTTGTAATTACAATTGTGACTATATG
70508572 ATTCGAATATATTGTTTGTAATTACAATTGTGACTATATG
1 ATTCGAATATATTGTTTGTAATTACAATTGTGACTATATG
70508612 TGTATCTTCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.45
Consensus pattern (40 bp):
ATTCGAATATATTGTTTGTAATTACAATTGTGACTATATG
Found at i:70508704 original size:20 final size:19
Alignment explanation
Indices: 70508685--70508733 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
70508675 ATTTATAATA
70508685 ATTTAATATTAATTAAAAT
1 ATTTAATATTAATTAAAAT
*
70508704 ATTTTATAATTAATTAAAAT
1 ATTTAAT-ATTAATTAAAAT
*
70508724 ATTTATTATT
1 ATTTAATATT
70508734 TTTAATTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 9 0.35
20 17 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTTAATATTAATTAAAAT
Found at i:70524352 original size:39 final size:40
Alignment explanation
Indices: 70524251--70524435 Score: 159
Period size: 40 Copynumber: 4.7 Consensus size: 40
70524241 TTGAATGATG
* *
70524251 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70524290 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70524331 TCCGGGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AAT
* * * * *
70524371 T-CGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTTCTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTA-AT
* *
70524411 T-CGGGATATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
70524436 ATCGAGTAGC
Statistics
Matches: 123, Mismatches: 14, Indels: 16
0.80 0.09 0.10
Matches are distributed among these distances:
39 31 0.25
40 79 0.64
41 12 0.10
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70532272 original size:39 final size:40
Alignment explanation
Indices: 70532172--70532356 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
70532162 TTGAATGATG
* * *
70532172 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
70532211 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70532252 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70532291 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
70532330 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70532357 AAGAGTAGCT
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:70532308 original size:79 final size:81
Alignment explanation
Indices: 70532173--70532356 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 81
70532163 TGAATGATGT
* *
70532173 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
*
70532237 GTGCGAGATACTA-ATT
66 GTGCGAGATACTATA-A
* * * * **
70532253 CTGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAAT
*
70532315 TGTGCGAGTTACTATAA
65 TGTGCGAGATACTATAA
*
70532332 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
70532357 AAGAGTAGCT
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.64
80 31 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATAA
Found at i:70532373 original size:79 final size:78
Alignment explanation
Indices: 70532225--70532388 Score: 181
Period size: 79 Copynumber: 2.1 Consensus size: 78
70532215 GGACTAAGAT
* * * **
70532225 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTAAGAGTTACTAA
*
70532290 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* *
70532304 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTG-AAGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGTAAGAGTTA-C
* *
70532366 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
70532382 CCGAAGG
1 CCGAAGG
70532389 TACGTGATTT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
78 18 0.25
79 40 0.56
80 14 0.19
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGTAAGAGTTACTAA
ATCCGGTTAAATC
Found at i:70536300 original size:5 final size:5
Alignment explanation
Indices: 70536290--70536315 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
70536280 ATCTTAGTCT
70536290 TCCCC TCCCC TCCCC TCCCC TCCCC T
1 TCCCC TCCCC TCCCC TCCCC TCCCC T
70536316 TCTCTTTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.77, G:0.00, T:0.23
Consensus pattern (5 bp):
TCCCC
Found at i:70543586 original size:29 final size:29
Alignment explanation
Indices: 70543523--70543590 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
70543513 TAATCAACCA
70543523 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
70543552 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
70543581 CGCACACTTA
1 CGCACACTTA
70543591 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:70543702 original size:174 final size:174
Alignment explanation
Indices: 70543412--70543739 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
70543402 AACTCAAGGT
* *
70543412 ACTTACCTTTTCCGCTGTCCAAAATTGACTCAGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
70543477 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
70543542 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
* *
70543586 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
70543651 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
70543716 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
70543740 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCAGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:70543731 original size:29 final size:30
Alignment explanation
Indices: 70543692--70543770 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
70543682 CTTAATAATC
70543692 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
70543722 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
70543751 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
70543771 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:70548495 original size:24 final size:23
Alignment explanation
Indices: 70548447--70548502 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 23
70548437 TTTTCTCCTA
* *
70548447 AATTTTTATTTTATTTAATATTT
1 AATTTTTAATTTATTGAATATTT
70548470 AATTTTCTAATTTATTGAAT-TATT
1 AATTTT-TAATTTATTGAATAT-TT
70548494 AATATTTTA
1 AAT-TTTTA
70548503 TACTAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 7 0.25
24 18 0.64
25 3 0.11
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
AATTTTTAATTTATTGAATATTT
Found at i:70554167 original size:48 final size:47
Alignment explanation
Indices: 70554115--70554230 Score: 110
Period size: 48 Copynumber: 2.4 Consensus size: 47
70554105 TTATATAACT
*
70554115 GGAAGCTCATAAGAGCC-ATAATCGAGAAGTTCATAAAGAACCTTATCG
1 GGAAGCTCATAAGAGCCAAT-ATCGAGAAGTTCA-AAAGAACATTATCG
* * * * * *
70554163 GGAAGCT-TTGGATAGCCAATATCGTGAAGTTCAAACGAGCATTATCG
1 GGAAGCTCAT-AAGAGCCAATATCGAGAAGTTCAAAAGAACATTATCG
*
70554210 GGAAGCTCATAAAGATCCAAT
1 GGAAGCTCAT-AAGAGCCAAT
70554231 TGAGCAGCAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
47 19 0.36
48 32 0.60
49 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (47 bp):
GGAAGCTCATAAGAGCCAATATCGAGAAGTTCAAAAGAACATTATCG
Found at i:70554667 original size:15 final size:15
Alignment explanation
Indices: 70554647--70554676 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
70554637 TGTTTCCTCA
70554647 ATCCAATTACGTATT
1 ATCCAATTACGTATT
70554662 ATCCAATTACGTATT
1 ATCCAATTACGTATT
70554677 TAGTCTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
ATCCAATTACGTATT
Found at i:70562634 original size:13 final size:13
Alignment explanation
Indices: 70562616--70562641 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
70562606 TATCCGGGTT
70562616 AAATCCCGCAGGC
1 AAATCCCGCAGGC
70562629 AAATCCCGCAGGC
1 AAATCCCGCAGGC
70562642 TTCGTGCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.23, T:0.08
Consensus pattern (13 bp):
AAATCCCGCAGGC
Found at i:70562680 original size:38 final size:38
Alignment explanation
Indices: 70562629--70562894 Score: 363
Period size: 38 Copynumber: 6.9 Consensus size: 38
70562619 TCCCGCAGGC
* *
70562629 AAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGGTT
1 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
**
70562667 AAATCAT-GCAGGCTTCGTGCTGGTATTATATCTAGGTT
1 AAATC-TCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* * *
70562705 AAATCTCGTAGGCTTCGTGCTGGTAATATATCCAGGTT
1 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
*
70562743 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTT
1 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGG-TT
* **
70562782 AAAGACTCGCAGGCTTCGTGCTGGTAAAATATCCGGGTT
1 AAA-TCTCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
*
70562821 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
1 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
* * *
70562859 AAATCCCGCAGGCTTAGTGCTGGTATTATATTCGGG
1 AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGG
70562895 CCTTCGTGCC
Statistics
Matches: 202, Mismatches: 22, Indels: 8
0.87 0.09 0.03
Matches are distributed among these distances:
37 1 0.00
38 162 0.80
39 10 0.05
40 29 0.14
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
AAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGTT
Found at i:70562834 original size:116 final size:115
Alignment explanation
Indices: 70562629--70562895 Score: 394
Period size: 116 Copynumber: 2.3 Consensus size: 115
70562619 TCCCGCAGGC
* * *
70562629 AAATCCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAATCATGCAGGCTTCGTGCTGGTAT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAACATGCAGGCTTCGTGCTGGTAA
* * * *
70562693 TATATCTAGGTTAAATCTCGTAGGCTTCGTGCTGGTAATATATCCAGGTT
66 AATATCCAGGTTAAATCTCGCAGGCTTCGTGCTGGTAATATATCCAGGAT
70562743 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGAC-TCGCAGGCTTCGTGCTGGT
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAA-ACAT-GCAGGCTTCGTGCTGGT
* * *
70562807 AAAATATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTATTATATCCGGGAT
64 AAAATATCCAGGTTAAATCTCGCAGGCTTCGTGCTGGTAATATATCCAGGAT
* *
70562859 AAATCCCGCAGGCTTAGTGCTGGTATTATATTCGGGC
1 AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGC
70562896 CTTCGTGCCT
Statistics
Matches: 138, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
114 35 0.25
115 6 0.04
116 97 0.70
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (115 bp):
AAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAACATGCAGGCTTCGTGCTGGTAA
AATATCCAGGTTAAATCTCGCAGGCTTCGTGCTGGTAATATATCCAGGAT
Found at i:70575744 original size:46 final size:45
Alignment explanation
Indices: 70575614--70575775 Score: 150
Period size: 47 Copynumber: 3.5 Consensus size: 45
70575604 ATGCCGATGC
* *
70575614 CATGCCCCAGACATGGTCTTACACTGGCTTACATCTCAAGTCGAAG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAG-CGAAG
* * *
70575660 CCATGTCCTAGACATGGTCTTACACTGAC-TATCATCTCGTAGCAGACG
1 -CATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCG-AGC-GAAG
* * *
70575708 CATGTCCCAGACAT-GTCTTACATTGGCTTACGTCTCGAGGCCGATG
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-G-CGAAG
* *
70575754 CATGTCCTAGGCAT-GTCTTACA
1 CATGTCCCAGACATGGTCTTACA
70575776 GTAGCACTGT
Statistics
Matches: 97, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 43 0.44
47 48 0.49
48 5 0.05
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (45 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGCGAAG
Found at i:70577476 original size:39 final size:40
Alignment explanation
Indices: 70577381--70577642 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
70577371 TTGAATGATG
*
70577381 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70577419 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70577460 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
70577499 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70577538 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70577577 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70577616 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70577643 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70583799 original size:27 final size:27
Alignment explanation
Indices: 70583769--70583945 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
70583759 TATTGAGTCT
* * * *
70583769 GCACACTCAGTGCTATATAATCAACTC
1 GCACACTTAGTGCTACATAGTCAAATC
* *
70583796 GCACACTTAGTGCTACGTAATCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
70583823 GCACACTTAGTGCTACATAGTCAAACTC
1 GCACACTTAGTGCTACATAGTCAAA-TC
** * *
70583851 GCACACTTAGTGCCGCATGGTCAATTC
1 GCACACTTAGTGCTACATAGTCAAATC
* **
70583878 GCACACTTAGTGC-ATCATATTCATTTC
1 GCACACTTAGTGCTA-CATAGTCAAATC
*
70583905 GCACACTTAGTGCAACATAGTCAAATC
1 GCACACTTAGTGCTACATAGTCAAATC
70583932 GCACACTTAGTGCT
1 GCACACTTAGTGCT
70583946 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTACATAGTCAAATC
Found at i:70583907 original size:82 final size:81
Alignment explanation
Indices: 70583789--70583944 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70583779 TGCTATATAA
* *
70583789 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70583854 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70583871 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70583935 CACTTAGTGC
65 CACTTAGTGC
70583945 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70591845 original size:27 final size:27
Alignment explanation
Indices: 70591815--70591992 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
70591805 ATATTGAGTC
* * * *
70591815 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
70591842 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70591869 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
70591897 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
70591924 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
70591951 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
70591978 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
70591993 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:70591954 original size:82 final size:81
Alignment explanation
Indices: 70591836--70591991 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
70591826 TGCTATATAA
* *
70591836 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
70591901 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
70591918 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
70591982 CACTTAGTGC
65 CACTTAGTGC
70591992 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:70596765 original size:39 final size:40
Alignment explanation
Indices: 70596670--70596892 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
70596660 TTGAATGATG
*
70596670 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
70596708 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
70596749 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
70596788 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
70596827 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
70596866 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
70596893 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:70596856 original size:79 final size:81
Alignment explanation
Indices: 70596670--70596892 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
70596660 TTGAATGATG
* * *
70596670 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
70596732 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
70596749 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
70596810 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
70596827 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
70596891 TG
66 TG
70596893 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:70596914 original size:79 final size:79
Alignment explanation
Indices: 70596670--70596925 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
70596660 TTGAATGATG
* * * *
70596670 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
70596731 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
70596749 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
70596813 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
70596827 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
70596890 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
70596907 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
70596926 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:70598700 original size:28 final size:29
Alignment explanation
Indices: 70598639--70598702 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
70598629 CTTTTTTGGT
* *
70598639 AAAATGACCATTTTGCCCCTAACCTTGAC
1 AAAATGACCATTTTACCCCTAACCTCGAC
* **
70598668 AAAATGACCATTTTACCCTTAGGCTCGA-
1 AAAATGACCATTTTACCCCTAACCTCGAC
70598696 AAAATGA
1 AAAATGA
70598703 TTTTTATCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 7 0.23
29 23 0.77
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (29 bp):
AAAATGACCATTTTACCCCTAACCTCGAC
Found at i:70607651 original size:18 final size:18
Alignment explanation
Indices: 70607630--70607668 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
70607620 GATTGAGAGT
* *
70607630 GAAAAGGAATGTGAAACA
1 GAAAAGAAATGTGAAAAA
*
70607648 GAAAAGAAATTTGAAAAA
1 GAAAAGAAATGTGAAAAA
70607666 GAA
1 GAA
70607669 GTTGAAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.03, G:0.23, T:0.13
Consensus pattern (18 bp):
GAAAAGAAATGTGAAAAA
Found at i:70609090 original size:12 final size:13
Alignment explanation
Indices: 70609068--70609096 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
70609058 AAGTTTTATT
70609068 TTTATTTTATTTA
1 TTTATTTTATTTA
70609081 TTTA-TTTATTTA
1 TTTATTTTATTTA
70609093 TTTA
1 TTTA
70609097 CTTAGTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:70615496 original size:27 final size:27
Alignment explanation
Indices: 70615466--70615639 Score: 177
Period size: 27 Copynumber: 6.4 Consensus size: 27
70615456 AAATTGTACA
* *
70615466 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
** * *
70615493 GCACTAAGTGTGCGAAATGAATATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* * *
70615520 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
70615547 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* *
70615575 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
70615602 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
70615629 GCACTGAGTGT
1 GCACTAAGTGT
70615640 ACGGGCTCAA
Statistics
Matches: 123, Mismatches: 23, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 101 0.82
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:70615579 original size:82 final size:81
Alignment explanation
Indices: 70615466--70615621 Score: 222
Period size: 82 Copynumber: 1.9 Consensus size: 81
70615456 AAATTGTACA
* * * *
70615466 GCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAAGTGT
1 GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
70615531 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
70615547 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
70615612 TGCGAGTTGA
65 TGCGAATTGA
70615622 TTATATAGCA
Statistics
Matches: 65, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 14 0.22
82 51 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGGGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70615633 original size:82 final size:81
Alignment explanation
Indices: 70615462--70615639 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
70615452 GATTAAATTG
* * * * *
70615462 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGTTGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
70615527 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70615543 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
* **
70615608 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
70615625 TATAGCACTGAGTGT
1 TACAGCACTAAGTGT
70615640 ACGGGCTCAA
Statistics
Matches: 79, Mismatches: 17, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
81 16 0.20
82 63 0.80
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:70633429 original size:40 final size:40
Alignment explanation
Indices: 70633370--70633763 Score: 635
Period size: 40 Copynumber: 9.8 Consensus size: 40
70633360 ATTTGAATAC
*
70633370 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
70633410 ATCTGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
70633450 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
*
70633492 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
70633532 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
70633574 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
*
70633614 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
70633654 ATCCGGGCTAAGACCCGGAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
70633694 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
70633734 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
70633764 TTGTGGTTAT
Statistics
Matches: 333, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
40 254 0.76
42 79 0.24
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:70633524 original size:82 final size:81
Alignment explanation
Indices: 70633370--70633763 Score: 659
Period size: 82 Copynumber: 4.9 Consensus size: 81
70633360 ATTTGAATAC
* *
70633370 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTG-ATATATCTGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
70633434 TTGTGCAAGTTGATAT
66 TTGTGCAAGTTGATAT
70633450 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CATATATCCGGGCTAAGACCCGAAGGCA
70633515 TTTGTGCAAGTTGATAT
65 TTTGTGCAAGTTGATAT
70633532 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CATATATCCGGGCTAAGACCCGAAGGCA
*
70633597 TTTGTGCGAGTTGATAT
65 TTTGTGCAAGTTGATAT
* * *
70633614 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTG-ATATATCCGGGCTAAGACCCGGAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
70633678 TTGTGCAAGTTGATAT
66 TTGTGCAAGTTGATAT
* * * *
70633694 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGC-TATACCCGGGTTAAGACCCGAAGGCAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
70633758 TTGTGC
66 TTGTGC
70633764 TTGTGGTTAT
Statistics
Matches: 299, Mismatches: 12, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
80 140 0.47
82 159 0.53
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (81 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCATATATCCGGGCTAAGACCCGAAGGCAT
TTGTGCAAGTTGATAT
Found at i:70633614 original size:122 final size:120
Alignment explanation
Indices: 70633370--70633763 Score: 653
Period size: 122 Copynumber: 3.2 Consensus size: 120
70633360 ATTTGAATAC
* *
70633370 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCTGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
70633435 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
66 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
*
70633492 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
*
70633557 TGTGCGAGTTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
66 TGTGCAAGTTG--ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
70633614 ATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATATCCGGGCTAAGACCCGGAGGCAAT
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* *
70633679 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
66 TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
70633734 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCAATTGTGC
70633764 TTGTGGTTAT
Statistics
Matches: 259, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
120 70 0.27
122 149 0.58
124 40 0.15
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (120 bp):
ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:70640230 original size:377 final size:377
Alignment explanation
Indices: 70639529--70640280 Score: 1362
Period size: 377 Copynumber: 2.0 Consensus size: 377
70639519 TAAATGTGTC
70639529 TAATGTTAATGCATTTCGAGCTATTCTGCTTTATTGTATCTTGCAACGTTGAAAAGTGTGCATGA
1 TAATGTTAATGCATTTCGAGCTATTCTGCTTTATTGTATCTTGCAACGTTGAAAAGTGTGCATGA
* *
70639594 GTGATAACTCTTGAAAAGAGTTATATTTAAGGCCTCTAAATAGAATTAATTGGTTATAATTAAGT
66 GTGATAAATCTTGAAAAGAGTCATATTTAAGGCCTCTAAATAGAATTAATTGGTTATAATTAAGT
70639659 GAATACATTTGCATTTTTAGGATATTTTTATAACACTGCATAATAAAGCTTGGATTGTGATATAA
131 GAATACATTTGCATTTTTAGGATATTTTTATAACACTGCATAATAAAGCTTGGATTGTGATATAA
*
70639724 TGGTCATGATTTGTTACTTTTATCACTTGGGGAGGAAATGTGTGGTTTTGTGTGAATACATGTGG
196 TGGTCATGATTTGTTACTTTTATCACTTGGGGAGGAAAGGTGTGGTTTTGTGTGAATACATGTGG
*
70639789 AGGAAGAGCAAGAAAATAAAGAGGGAAAATAAAGGAAGTGAAATATTGTCTTGGAAAATGGTGAA
261 AGGAAGAGAAAGAAAATAAAGAGGGAAAATAAAGGAAGTGAAATATTGTCTTGGAAAATGGTGAA
*
70639854 ATTGATTGCCAACAGATTTGCCATGGTAATTTTGAGAAGATGACTCAGCACT
326 ATTGATTGCCAACAGATTTGCCACGGTAATTTTGAGAAGATGACTCAGCACT
* *
70639906 TAATGTTAATGCATTTTGAGCTATTCTGCTTTATTGTATCTTGCAACGTTGACAAGTGTGCATGA
1 TAATGTTAATGCATTTCGAGCTATTCTGCTTTATTGTATCTTGCAACGTTGAAAAGTGTGCATGA
*
70639971 GTGATAAATCTTGAAAAGAGTCATATTTAAGGCCTCTAAATAGAATTAATTGGTTGTAATTAAGT
66 GTGATAAATCTTGAAAAGAGTCATATTTAAGGCCTCTAAATAGAATTAATTGGTTATAATTAAGT
*
70640036 GAATACATTTGCATTTTTAGGATATTTTTATAACATTGCATAATAAAGCTTGGATTGTGATATAA
131 GAATACATTTGCATTTTTAGGATATTTTTATAACACTGCATAATAAAGCTTGGATTGTGATATAA
* *
70640101 TGGTCATTATTTGTTACTTTTATCACTTGGGGAGGAAAGGTGTGGTTTTGTGTGAATACATGTGT
196 TGGTCATGATTTGTTACTTTTATCACTTGGGGAGGAAAGGTGTGGTTTTGTGTGAATACATGTGG
* * *
70640166 AGGAAGAGAAAGAAAATGAAGAGGGAAAATAAAGGAAGTGAAATATTGT-TCTGGCAACTGGTGA
261 AGGAAGAGAAAGAAAATAAAGAGGGAAAATAAAGGAAGTGAAATATTGTCT-TGGAAAATGGTGA
70640230 AATTGATTGCCAACAGATTTGCCACGGTAATTTTGAGAAGATGACTCAGCA
325 AATTGATTGCCAACAGATTTGCCACGGTAATTTTGAGAAGATGACTCAGCA
70640281 TATTATCCAC
Statistics
Matches: 360, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
376 1 0.00
377 359 1.00
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (377 bp):
TAATGTTAATGCATTTCGAGCTATTCTGCTTTATTGTATCTTGCAACGTTGAAAAGTGTGCATGA
GTGATAAATCTTGAAAAGAGTCATATTTAAGGCCTCTAAATAGAATTAATTGGTTATAATTAAGT
GAATACATTTGCATTTTTAGGATATTTTTATAACACTGCATAATAAAGCTTGGATTGTGATATAA
TGGTCATGATTTGTTACTTTTATCACTTGGGGAGGAAAGGTGTGGTTTTGTGTGAATACATGTGG
AGGAAGAGAAAGAAAATAAAGAGGGAAAATAAAGGAAGTGAAATATTGTCTTGGAAAATGGTGAA
ATTGATTGCCAACAGATTTGCCACGGTAATTTTGAGAAGATGACTCAGCACT
Found at i:70645394 original size:27 final size:27
Alignment explanation
Indices: 70645364--70645723 Score: 384
Period size: 27 Copynumber: 13.4 Consensus size: 27
70645354 AGAAATTATT
* *
70645364 GAAATACACTCGATTTGTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
70645391 GAAATACCCCCGATTTGTAAATTTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * * **
70645418 GAAATACACTC-AATTGTGAAATTATT
1 GAAATACCCTCGATTTGTAAAATTACC
* *
70645444 GAAGTACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
70645471 AAAATACCCCCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
70645498 GAAATACTCCT-GATTTGTGAAATTACC
1 GAAATAC-CCTCGATTTGTAAAATTACC
* * *
70645525 GAAACACTCTCGATTTATAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* ** *
70645552 GAAACATGCTCGATTTGTGAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
70645579 GAAACACCCTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
70645606 GAAACACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
*
70645633 GAAATACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
70645660 GAAACACCATCGATTTTTAAAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
70645687 AAAATACCCTTG-TAGTGTAAAATTACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
70645714 GAAATACCCT
1 GAAATACCCT
70645724 TGTAGTGTAA
Statistics
Matches: 279, Mismatches: 50, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
26 23 0.08
27 254 0.91
28 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.30
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:70645754 original size:27 final size:27
Alignment explanation
Indices: 70645688--70645766 Score: 115
Period size: 27 Copynumber: 2.9 Consensus size: 27
70645678 AAAATTATCA
*
70645688 AAATACCCTTGTAGTGTAAAATTACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
70645715 AAATACCCTTGTAGTGTAAAATGACCG
1 AAATACCCTTGTAGTGTAAAATGACCG
* *
70645742 ACATA-CCTATGTAGGGTAAAATGAC
1 AAATACCCT-TGTAGTGTAAAATGAC
70645767 AGTTTTGCCC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
26 3 0.06
27 45 0.94
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.27
Consensus pattern (27 bp):
AAATACCCTTGTAGTGTAAAATGACCG
Found at i:70648583 original size:28 final size:28
Alignment explanation
Indices: 70648543--70648619 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 28
70648533 AAGTAGTTGA
*
70648543 GCCTGATGGGCCATATGAATGTA-ATTGG
1 GCCTAATGGGCCATATGAATG-AGATTGG
*
70648571 GCCTAATGGGCCATGTGAATGAGATTGG
1 GCCTAATGGGCCATATGAATGAGATTGG
* *
70648599 GCCTAAAGGGGCCAAATGAAT
1 GCCT-AATGGGCCATATGAAT
70648620 AAGTGTGGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.02
28 28 0.67
29 13 0.31
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (28 bp):
GCCTAATGGGCCATATGAATGAGATTGG
Found at i:70648957 original size:27 final size:27
Alignment explanation
Indices: 70648927--70649286 Score: 350
Period size: 27 Copynumber: 13.4 Consensus size: 27
70648917 AGAAATTATT
*
70648927 GAAATACCTTCGATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
70648954 GAAATACCTTCGATTTGTATAATTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* * *
70648981 GAAATACACTCGA-TTGTGAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
*
70649007 GAAATACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
70649034 AAAATACCC-CTGATTTGT-AAATTATC
1 GAAATACCCTC-GATTTGTAAAATTACC
* *
70649060 GAAATACCCCCGATTTGTGAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
70649087 GAGACACTCTCGATTTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * * * *
70649114 AAAACACCTTCGATATTTTAAAATTATC
1 GAAATACCCTCGAT-TTGTAAAATTACC
* *
70649142 GAAACACCCTCAATTTGTAAAATTACC
1 GAAATACCCTCGATTTGTAAAATTACC
* * **
70649169 GAAACACCCTCAATTTGTAAAATTATT
1 GAAATACCCTCGATTTGTAAAATTACC
*
70649196 GAAATACCCTCGATTTGTAAAATTACT
1 GAAATACCCTCGATTTGTAAAATTACC
* * * *
70649223 GAAACACCATCGATTTGTAAAGTTATC
1 GAAATACCCTCGATTTGTAAAATTACC
* *
70649250 GAAATTCCCTC-ATAGTGTAAAATTACC
1 GAAATACCCTCGAT-TTGTAAAATTACC
*
70649277 AAAATACCCT
1 GAAATACCCT
70649287 TGTAGTGTAA
Statistics
Matches: 274, Mismatches: 53, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
26 45 0.16
27 208 0.76
28 21 0.08
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (27 bp):
GAAATACCCTCGATTTGTAAAATTACC
Found at i:70649051 original size:80 final size:81
Alignment explanation
Indices: 70648918--70649286 Score: 374
Period size: 80 Copynumber: 4.6 Consensus size: 81
70648908 ATAGTAAAGA
* * * * * *
70648918 GAAATTATTGAAATACCTTCGATTTGTAAAATTACCGAAATACCTTCGATTTGTATAATTATCGA
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGA
* *
70648983 AATACACTCGA-TTGT
66 AACACCCTCGATTTGT
70648998 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCC-CTGATTTGT-AAATTATCG
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTC-GATTTGTAAAATTATCG
* *
70649061 AAATACCCCCGATTTGT
65 AAACACCCTCGATTTGT
* * * * * * * * *
70649078 GAAATTACCGAGACACTCTCGATTTGTAAAATTACTAAAACACCTTCGATATTTTAAAATTATCG
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGAT-TTGTAAAATTATCG
*
70649143 AAACACCCTCAATTTGT
65 AAACACCCTCGATTTGT
* * * ***
70649160 AAAATTACCGAAACACCCTCAATTTGTAAAATTATTGAAATACCCTCGATTTGTAAAATTA-CTG
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATC-G
*
70649224 AAACACCATCGATTTGT
65 AAACACCCTCGATTTGT
* *
70649241 -AAAGTTA-TCGAAATTCCCTC-ATAGTGTAAAATTACCAAAATACCCT
1 GAAA-TTACT-GAAATACCCTCAAT-TTGTAAAATTACCAAAATACCCT
70649287 TGTAGTGTAA
Statistics
Matches: 242, Mismatches: 38, Indels: 17
0.81 0.13 0.06
Matches are distributed among these distances:
79 19 0.08
80 97 0.40
81 61 0.25
82 65 0.27
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCGA
AACACCCTCGATTTGT
Found at i:70649292 original size:27 final size:27
Alignment explanation
Indices: 70649262--70649329 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
70649252 AATTCCCTCA
*
70649262 TAGTGTAAAATTACCAAAATACCCTTG
1 TAGTGTAAAATGACCAAAATACCCTTG
** *
70649289 TAGTGTAAAATGACTGACATACCCTTG
1 TAGTGTAAAATGACCAAAATACCCTTG
*
70649316 TAGGGTAAAATGAC
1 TAGTGTAAAATGAC
70649330 AGTTTTGCCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.38, C:0.16, G:0.18, T:0.28
Consensus pattern (27 bp):
TAGTGTAAAATGACCAAAATACCCTTG
Found at i:70654489 original size:24 final size:24
Alignment explanation
Indices: 70654457--70654504 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
70654447 AAGAGGTAAA
70654457 CTTATATTGGTTGATTAATTAATT
1 CTTATATTGGTTGATTAATTAATT
70654481 CTTATATTGGTTGATTAATTAATT
1 CTTATATTGGTTGATTAATTAATT
70654505 AGTTAGAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.04, G:0.12, T:0.54
Consensus pattern (24 bp):
CTTATATTGGTTGATTAATTAATT
Found at i:70658453 original size:46 final size:49
Alignment explanation
Indices: 70658366--70658473 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 49
70658356 TTACCCGTTT
* * * * *
70658366 GGGTTAAACCTACACGAATAACGAATCATAGTGTTTGGTCACCTA-TAA
1 GGGTTGAACCTACACAAATAACGAATAATAGTGTCTGGTCACCCATTAA
*
70658414 GGGTTGAACCTACACAAAT-A-GGATAATAGTGTCTGGTCACCCATTAA
1 GGGTTGAACCTACACAAATAACGAATAATAGTGTCTGGTCACCCATTAA
*
70658461 -GGTTGAACTTACA
1 GGGTTGAACCTACA
70658474 TAAAAAATTG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 31 0.60
47 4 0.08
48 17 0.33
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.27
Consensus pattern (49 bp):
GGGTTGAACCTACACAAATAACGAATAATAGTGTCTGGTCACCCATTAA
Found at i:70661804 original size:27 final size:26
Alignment explanation
Indices: 70661773--70661950 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
70661763 TAAATTGTAC
70661773 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
70661800 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
70661826 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
70661854 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
70661882 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
70661909 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
70661936 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70661951 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:70661889 original size:82 final size:81
Alignment explanation
Indices: 70661774--70661929 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
70661764 AAATTGTACA
* * *
70661774 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70661838 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70661855 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70661920 TGCGAGTTGA
65 TGCGAATTGA
70661930 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70661941 original size:82 final size:81
Alignment explanation
Indices: 70661770--70661950 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
70661760 GATTAAATTG
* * *
70661770 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70661835 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70661851 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70661915 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70661933 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70661951 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70661961 original size:27 final size:27
Alignment explanation
Indices: 70661855--70661961 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
70661845 TGACCATGCG
* * *
70661855 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
70661883 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
70661910 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
70661937 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
70661962 CATTCATGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:70669839 original size:27 final size:26
Alignment explanation
Indices: 70669808--70669985 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
70669798 TAAATTGTAC
70669808 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
70669835 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
70669861 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
70669889 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
70669917 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
70669944 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
70669971 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
70669986 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:70669924 original size:82 final size:81
Alignment explanation
Indices: 70669809--70669964 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
70669799 AAATTGTACA
* * *
70669809 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
70669873 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
70669890 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
70669955 TGCGAGTTGA
65 TGCGAATTGA
70669965 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:70669976 original size:82 final size:81
Alignment explanation
Indices: 70669805--70669985 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
70669795 GATTAAATTG
* * *
70669805 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
70669870 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
70669886 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
70669950 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
70669968 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
70669986 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:70669996 original size:27 final size:27
Alignment explanation
Indices: 70669890--70669996 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
70669880 TGACCATGCG
* * *
70669890 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
70669918 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
70669945 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
70669972 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
70669997 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:70689548 original size:40 final size:40
Alignment explanation
Indices: 70689493--70689724 Score: 374
Period size: 40 Copynumber: 5.8 Consensus size: 40
70689483 ATTTGAATAC
*
70689493 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
70689533 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGACATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG--ATAT
70689575 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
70689615 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* *
70689655 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
* * *
70689695 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
70689725 TTGTGGTTAT
Statistics
Matches: 179, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 139 0.78
42 40 0.22
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.23
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
Found at i:70689630 original size:82 final size:81
Alignment explanation
Indices: 70689485--70689724 Score: 392
Period size: 82 Copynumber: 3.0 Consensus size: 81
70689475 GCATGAGCAT
* *
70689485 TTGAATACATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCG
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCG
* *
70689550 AAGGCATTTGTGCGAG
66 AAGGCAATTGTGCAAG
70689566 TTGACATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
1 TTGA-ATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCC
70689631 GAAGGCAATTGTGCAAG
65 GAAGGCAATTGTGCAAG
* * * *
70689648 TTG-ATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATACCCGGGTTAAGACCCG
1 TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCG
70689712 AAGGCAATTGTGC
66 AAGGCAATTGTGC
70689725 TTGTGGTTAT
Statistics
Matches: 150, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
80 70 0.47
81 4 0.03
82 76 0.51
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (81 bp):
TTGAATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCG
AAGGCAATTGTGCAAG
Found at i:70704208 original size:53 final size:54
Alignment explanation
Indices: 70704124--70704238 Score: 151
Period size: 53 Copynumber: 2.1 Consensus size: 54
70704114 TAGAATTAAG
* *
70704124 AAAATACCCTTGGTTTATAAAATTACCAAAATACCACTGGTTTGTAAAATTACC
1 AAAATACCCTTAGTTTATAAAATTACCAAAATACCACTGGTTTATAAAATTACC
* * * * *
70704178 AAAATACCC-TAGTTTGTAAAATTACCAAAATACCTCTGTTTTATGAAATTACT
1 AAAATACCCTTAGTTTATAAAATTACCAAAATACCACTGGTTTATAAAATTACC
*
70704231 GAAATACC
1 AAAATACC
70704239 ATCGACATGT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 44 0.83
54 9 0.17
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (54 bp):
AAAATACCCTTAGTTTATAAAATTACCAAAATACCACTGGTTTATAAAATTACC
Found at i:70704211 original size:80 final size:82
Alignment explanation
Indices: 70704124--70704295 Score: 190
Period size: 80 Copynumber: 2.1 Consensus size: 82
70704114 TAGAATTAAG
***
70704124 AAAATACCCT-TGGTTTATAAAATTACCAAAATACCA-CTGGTTTGTAAAATTACCAAAATACCC
1 AAAATACCCTCTGGTTTATAAAATTACCAAAATACCATC-GACATGTAAAATTACCAAAATACCC
*
70704187 TAG-TTTGTAAAATTACC
65 TAGACTTGTAAAATTACC
* * ** ***
70704204 AAAATA-CCTCTGTTTTATGAAATTACTGAAATACCATCGACATGTAAAATTATTGAAATACCCT
1 AAAATACCCTCTGGTTTATAAAATTACCAAAATACCATCGACATGTAAAATTACCAAAATACCCT
*
70704268 CGACTTGTAAAATTACC
66 AGACTTGTAAAATTACC
*
70704285 AAACTACCCTC
1 AAAATACCCTC
70704296 GATTTACAGA
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
79 3 0.04
80 49 0.65
81 19 0.25
82 4 0.05
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (82 bp):
AAAATACCCTCTGGTTTATAAAATTACCAAAATACCATCGACATGTAAAATTACCAAAATACCCT
AGACTTGTAAAATTACC
Found at i:70704292 original size:27 final size:27
Alignment explanation
Indices: 70704124--70704300 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
70704114 TAGAATTAAG
* * *
70704124 AAAATACCCTTGGTTTATAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
*
70704151 AAAATACCACT-GGTTTGTAAAATTACC
1 AAAATACC-CTCGATTTGTAAAATTACC
*
70704178 AAAATACCCTAG-TTTGTAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
* * * *
70704204 AAAATA-CCTCTGTTTTATGAAATTACT
1 AAAATACCCTC-GATTTGTAAAATTACC
* * ** **
70704231 GAAATACCATCGACATGTAAAATTATT
1 AAAATACCCTCGATTTGTAAAATTACC
* *
70704258 GAAATACCCTCGACTTGTAAAATTACC
1 AAAATACCCTCGATTTGTAAAATTACC
*
70704285 AAACTACCCTCGATTT
1 AAAATACCCTCGATTT
70704301 ACAGAATTAC
Statistics
Matches: 125, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
25 3 0.02
26 23 0.18
27 94 0.75
28 5 0.04
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATACCCTCGATTTGTAAAATTACC
Found at i:70704323 original size:27 final size:27
Alignment explanation
Indices: 70704289--70704482 Score: 244
Period size: 27 Copynumber: 7.2 Consensus size: 27
70704279 ATTACCAAAC
70704289 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
70704316 TATGCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
70704343 TACCCTCGATTTAAAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
70704370 TATCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
70704397 TACCCTCAATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
70704424 TGCCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
70704451 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
70704478 TACCC
1 TACCC
70704483 CTAGGGTGTT
Statistics
Matches: 144, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:70704336 original size:54 final size:54
Alignment explanation
Indices: 70704289--70704479 Score: 274
Period size: 54 Copynumber: 3.5 Consensus size: 54
70704279 ATTACCAAAC
* * *
70704289 TACCCTCGATTTACAGAATTACTGTTTTATGCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACTATTTTATCCTCGATTTACAGAATTACTGTTT
* * *
70704343 TACCCTCGATTTAAAAAATTACTATTTTATCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACTATTTTATCCTCGATTTACAGAATTACTGTTT
* * **
70704397 TACCCTCAATTTATAGAATTACTATTTTGCCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTAAAGAATTACTATTTTATCCTCGATTTACAGAATTACTGTTT
* *
70704451 TACCCTCGATTTAAAAAATTACCATTTTA
1 TACCCTCGATTTAAAGAATTACTATTTTA
70704480 CCCCTAGGGT
Statistics
Matches: 119, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 119 1.00
ACGTcount: A:0.30, C:0.19, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTAAAGAATTACTATTTTATCCTCGATTTACAGAATTACTGTTT
Found at i:70704336 original size:81 final size:81
Alignment explanation
Indices: 70704251--70704419 Score: 176
Period size: 81 Copynumber: 2.1 Consensus size: 81
70704241 CGACATGTAA
* ** *
70704251 AATTATTGAAATACCCTCGACTTGTAAAATTACCAAACTACCCTCGATTTACAGAATTACTGTTT
1 AATTACTGAAATACCCTCGACTTAAAAAATTACCAAACTACCCTCAATTTACAGAATTACTGTTT
** *
70704316 TATGCTCGATTTACAG
66 TACCCTCAATTTACAG
*** * * *** * *
70704332 AATTACTGTTTTACCCTCGATTTAAAAAATTACTATTTTATCCTCAATTTATAGAATTACTGTTT
1 AATTACTGAAATACCCTCGACTTAAAAAATTACCAAACTACCCTCAATTTACAGAATTACTGTTT
*
70704397 TACCCTCAATTTATAG
66 TACCCTCAATTTACAG
70704413 AATTACT
1 AATTACT
70704420 ATTTTGCCCT
Statistics
Matches: 70, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (81 bp):
AATTACTGAAATACCCTCGACTTAAAAAATTACCAAACTACCCTCAATTTACAGAATTACTGTTT
TACCCTCAATTTACAG
Found at i:70704954 original size:6 final size:6
Alignment explanation
Indices: 70704915--70704999 Score: 50
Period size: 6 Copynumber: 13.8 Consensus size: 6
70704905 TTGCATTCAC
* * *
70704915 ATTCTG ATAT-TG ATTCT- ATTACCTG ATACTG ATTCTG ATTGTA ATTCTG
1 ATTCTG AT-TCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
70704964 -TCACATA ATTCTG ATTCTG ATTTTG ATTCTG ATTCT
1 AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
70705000 AAATCTGATA
Statistics
Matches: 59, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
5 5 0.08
6 46 0.78
7 5 0.08
8 3 0.05
ACGTcount: A:0.24, C:0.15, G:0.13, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:70704994 original size:31 final size:31
Alignment explanation
Indices: 70704915--70704994 Score: 88
Period size: 31 Copynumber: 2.6 Consensus size: 31
70704905 TTGCATTCAC
* * * * *
70704915 ATTCTGATATTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTCACATAATACTG
* * *
70704946 ATTCTGATTGTAATTCTGTCACATAATTCTG
1 ATTCTGATTTTGATTCTGTCACATAATACTG
70704977 ATTCTGATTTTGATTCTG
1 ATTCTGATTTTGATTCTG
70704995 ATTCTAAATC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.24, C:0.15, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTCACATAATACTG
Found at i:70705119 original size:34 final size:34
Alignment explanation
Indices: 70705028--70705109 Score: 164
Period size: 34 Copynumber: 2.4 Consensus size: 34
70705018 TATTCTGTAA
70705028 TGGGCTAAGGCCCATCTGGTACTGTTTGTTATAG
1 TGGGCTAAGGCCCATCTGGTACTGTTTGTTATAG
70705062 TGGGCTAAGGCCCATCTGGTACTGTTTGTTATAG
1 TGGGCTAAGGCCCATCTGGTACTGTTTGTTATAG
70705096 TGGGCTAAGGCCCA
1 TGGGCTAAGGCCCA
70705110 ATTGATACTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 48 1.00
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (34 bp):
TGGGCTAAGGCCCATCTGGTACTGTTTGTTATAG
Found at i:70706958 original size:27 final size:27
Alignment explanation
Indices: 70706903--70706969 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
70706893 CTCATATCTA
* * * *
70706903 TAGGCTAGCATTACTGAACTACCCTTG
1 TAGGGTAGAATTACTGAAATACCCCTG
*
70706930 TAGGGTAGAATTACTGAAATGCCCCTG
1 TAGGGTAGAATTACTGAAATACCCCTG
70706957 TAGGGTAGAATTA
1 TAGGGTAGAATTA
70706970 ACAAAATACC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (27 bp):
TAGGGTAGAATTACTGAAATACCCCTG
Found at i:70707142 original size:27 final size:27
Alignment explanation
Indices: 70706965--70707149 Score: 169
Period size: 27 Copynumber: 6.9 Consensus size: 27
70706955 TGTAGGGTAG
* * * *
70706965 AATTAACAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
70706992 AATTACCAAAATACCACT-GGTTTGTAA
1 AATTACCAAAATACC-CTCGATTTGTAA
*
70707019 AATTACCAAAATACCACTAG-TTTGTAA
1 AATTACCAAAATACC-CTCGATTTGTAA
*
70707046 AATTACCAAAATA-CCTCTGATTTGTGA
1 AATTACCAAAATACCCTC-GATTTGTAA
* ** * **
70707073 AGTTACTGAAATACCATCGACCTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
** *
70707100 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTCGATTTGTAA
*
70707127 AATTACCAAACTACCCTCGATTT
1 AATTACCAAAATACCCTCGATTT
70707150 ACAGAATTAC
Statistics
Matches: 135, Mismatches: 18, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.01
26 2 0.01
27 125 0.93
28 6 0.04
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTCGATTTGTAA
Found at i:70707157 original size:27 final size:26
Alignment explanation
Indices: 70707111--70707186 Score: 64
Period size: 27 Copynumber: 2.8 Consensus size: 26
70707101 ATTACTGAAA
70707111 TACCCTCGACTTGTA-AAATTACCAAAC
1 TACCCTCGA-TT-TACAAATTACCAAAC
*****
70707138 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACA-AATTACCAAAC
70707165 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTAC-AAATTAC
70707187 TGTTTTACCC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
25 2 0.05
26 3 0.07
27 35 0.85
28 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.08, T:0.33
Consensus pattern (26 bp):
TACCCTCGATTTACAAATTACCAAAC
Found at i:70707183 original size:81 final size:81
Alignment explanation
Indices: 70707098--70707268 Score: 191
Period size: 81 Copynumber: 2.1 Consensus size: 81
70707088 ATCGACCTGT
** *
70707098 AAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAACTAC-CCTCGATTTACAGAATTACTG
1 AAAATTACTGAAATACCCTCGACTTAAAAAATTA-CAAACTACTCCTCGATTTACAGAATTACTA
70707162 TTTTACCCTCGATTTAC
65 TTTTACCCTCGATTTAC
*** * * ** * *
70707179 AAAATTACTGTTTTACCCTCGATTTAAAAAATTACTATTTTCTCCTCGATTTATAGAATTACTAT
1 AAAATTACTGAAATACCCTCGACTTAAAAAATTACAAACTACTCCTCGATTTACAGAATTACTAT
* **
70707244 TTTACTCTCGATTTGT
66 TTTACCCTCGATTTAC
70707260 AAAATTACT
1 AAAATTACT
70707269 ATTTTGCCCT
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
80 4 0.05
81 70 0.95
ACGTcount: A:0.33, C:0.20, G:0.08, T:0.39
Consensus pattern (81 bp):
AAAATTACTGAAATACCCTCGACTTAAAAAATTACAAACTACTCCTCGATTTACAGAATTACTAT
TTTACCCTCGATTTAC
Found at i:70707187 original size:27 final size:27
Alignment explanation
Indices: 70707138--70707331 Score: 246
Period size: 27 Copynumber: 7.2 Consensus size: 27
70707128 ATTACCAAAC
* *
70707138 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
70707165 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
70707192 TACCCTCGATTTAAAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
70707219 T-CTCCTCGATTTATAGAATTACTATTT
1 TAC-CCTCGATTTACAAAATTACTATTT
* **
70707246 TACTCTCGATTTGTAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
70707273 TGCCCTTGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
70707300 TACCCTCGATTTAAAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
70707327 TACCC
1 TACCC
70707332 CTAGGGTGTT
Statistics
Matches: 146, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 144 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.07, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:70707807 original size:6 final size:6
Alignment explanation
Indices: 70707790--70707898 Score: 62
Period size: 6 Copynumber: 17.8 Consensus size: 6
70707780 ATTCTATTAC
* * * *
70707790 CTGATA CTGATT CTGATT CTAATT CTG-TCAC CTAATT CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT
* * * * * *
70707839 TTGATT CTAATT CTG-TCAC CTGATT CTGATT CTAATT CTCATT TTGATT
1 CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGATT
70707888 CT-AGTT CTGAT
1 CTGA-TT CTGAT
70707899 AATGTTTCTT
Statistics
Matches: 77, Mismatches: 18, Indels: 16
0.69 0.16 0.14
Matches are distributed among these distances:
5 3 0.04
6 66 0.86
7 6 0.08
8 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:70707833 original size:19 final size:19
Alignment explanation
Indices: 70707802--70707871 Score: 72
Period size: 19 Copynumber: 3.7 Consensus size: 19
70707792 GATACTGATT
70707802 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
* * *
70707821 CTAATTCTGATTCTG--ATT
1 CTGATTCTAATTCTGTCA-C
*
70707839 TTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
70707858 CTGATTCTGATTCT
1 CTGATTCTAATTCT
70707872 AATTCTCATT
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
17 1 0.03
18 12 0.31
19 25 0.64
20 1 0.03
ACGTcount: A:0.20, C:0.21, G:0.11, T:0.47
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:70707844 original size:37 final size:37
Alignment explanation
Indices: 70707790--70707877 Score: 140
Period size: 37 Copynumber: 2.4 Consensus size: 37
70707780 ATTCTATTAC
*
70707790 CTGATACTGATTCTGATTCTAATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
* *
70707827 CTGATTCTGATTTTGATTCTAATTCTGTCACCTGATT
1 CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
*
70707864 CTGATTCTAATTCT
1 CTGATTCTGATTCT
70707878 CATTTTGATT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.22, C:0.20, G:0.11, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTAATTCTGTCACCTAATT
Found at i:70707883 original size:43 final size:37
Alignment explanation
Indices: 70707803--70707896 Score: 107
Period size: 43 Copynumber: 2.4 Consensus size: 37
70707793 ATACTGATTC
* *
70707803 TGATTCTAATTCTGTCACCTAATTCTGATTCTGATTT
1 TGATTCTAATTCTGTCACCTAATTCTAATTCTCATTT
70707840 TGATTCTAATTCTGTCACCTGATTCTGATTCTAATTCTCATTT
1 TGATTCTAATTCTGTCACCT-A-----ATTCTAATTCTCATTT
*
70707883 TGATTCTAGTTCTG
1 TGATTCTAATTCTG
70707897 ATAATGTTTC
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
37 20 0.42
38 1 0.02
43 27 0.56
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.49
Consensus pattern (37 bp):
TGATTCTAATTCTGTCACCTAATTCTAATTCTCATTT
Found at i:70710740 original size:18 final size:18
Alignment explanation
Indices: 70710717--70710752 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70710707 TAAAATTTAA
70710717 ATTGCAGTAAAAGTAAAT
1 ATTGCAGTAAAAGTAAAT
70710735 ATTGCAGTAAAAGTAAAT
1 ATTGCAGTAAAAGTAAAT
70710753 GGCTAAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.06, G:0.17, T:0.28
Consensus pattern (18 bp):
ATTGCAGTAAAAGTAAAT
Found at i:70715926 original size:24 final size:24
Alignment explanation
Indices: 70715803--70715924 Score: 199
Period size: 24 Copynumber: 5.0 Consensus size: 24
70715793 AAGGCTGTTA
*
70715803 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
70715827 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
70715851 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
* *
70715875 GGAGAGGATTTAGGAACTGATAAA
1 GGAGAGGATTTAGGAGCTGATAAG
*
70715899 GGAGAAGATTTAGGAGCTGATCAAG
1 GGAGAGGATTTAGGAGCTGAT-AAG
70715924 G
1 G
70715925 AGCAGGAATT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
24 88 0.97
25 3 0.03
ACGTcount: A:0.36, C:0.05, G:0.39, T:0.20
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:70717615 original size:33 final size:34
Alignment explanation
Indices: 70717538--70717618 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
70717528 TATGGGCCAT
*
70717538 ACTGTTATCTGAATAAGGGGCTAAGGCCGAGTTC
1 ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
* * *
70717572 AATGTAATCTGAA-AA-GGGCTCTA-GCCCAGTATC
1 ACTGTTATCTGAATAAGGGGCT-AAGGCCCAGT-TC
70717605 ACTGTTATCTGAAT
1 ACTGTTATCTGAAT
70717619 GGGCTTAGGC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
32 11 0.29
33 16 0.42
34 11 0.29
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (34 bp):
ACTGTTATCTGAATAAGGGGCTAAGGCCCAGTTC
Found at i:70728142 original size:46 final size:48
Alignment explanation
Indices: 70728038--70728157 Score: 154
Period size: 48 Copynumber: 2.5 Consensus size: 48
70728028 TGTCTTCGAC
** * *
70728038 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
70728086 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
*
70728132 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
70728158 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 35 0.56
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.35
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:70731417 original size:40 final size:40
Alignment explanation
Indices: 70731340--70731517 Score: 279
Period size: 40 Copynumber: 4.5 Consensus size: 40
70731330 AAACCAAGTA
* * * *
70731340 CCTTCGGGATTTAG-CCGGACATAGCT-ACCCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
70731379 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70731419 CCTTCGGGACTTACCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
70731459 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70731499 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
70731518 TTATCATCCG
Statistics
Matches: 130, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.11
40 116 0.89
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70739549 original size:40 final size:40
Alignment explanation
Indices: 70739437--70739616 Score: 289
Period size: 39 Copynumber: 4.6 Consensus size: 40
70739427 AAACCAAGTA
* *
70739437 CCTTC-GGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
70739475 CCTTCGGGACTTAGCCCGG-TATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70739514 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70739554 CCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
70739593 CCTTCGGGACTTAGCCCGGTATAT
1 CCTTCGGGACTTAGCCCGG-ATAT
70739617 CCGAATATTC
Statistics
Matches: 134, Mismatches: 2, Indels: 9
0.92 0.01 0.06
Matches are distributed among these distances:
38 6 0.04
39 81 0.60
40 45 0.34
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:70739581 original size:79 final size:79
Alignment explanation
Indices: 70739437--70739616 Score: 294
Period size: 79 Copynumber: 2.3 Consensus size: 79
70739427 AAACCAAGTA
* * *
70739437 CCTTC-GGATTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTATAGT
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGT
70739500 AACTCGCACAAATG
66 AACTCGCACAAATG
70739514 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAG
70739578 TAACTCGCACAAATG
65 TAACTCGCACAAATG
70739593 CCTTCGGGACTTAGCCCGGTATAT
1 CCTTCGGGACTTAGCCCGG-ATAT
70739617 CCGAATATTC
Statistics
Matches: 96, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
77 5 0.05
78 8 0.08
79 79 0.82
80 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAGT
AACTCGCACAAATG
Found at i:70750371 original size:272 final size:272
Alignment explanation
Indices: 70749885--70750422 Score: 970
Period size: 272 Copynumber: 2.0 Consensus size: 272
70749875 GACAAGAGAA
* * *
70749885 CAAAATAAATACTCTTCTTACCTTGCCACGACTTGAACCTTAGACCTCAAGAAAACTACATACGC
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAAAACTACACACAC
70749950 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
66 CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
*
70750015 CAAGCTAAAGCCAAGGTTCACTTAAGGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
131 CAAGCTAAAGCCAAGGTTCACTTAAAGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
* *
70750080 CCAGGCTTCTCAAACACTCCCAACCACATCCAAATCACTTAGCCAATAAAGCAAACATGAATTTT
196 CCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCCAATAAAGCAAACATGAAATTT
70750145 GTGCCAAGGGAG
261 GTGCCAAGGGAG
*
70750157 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAGAACT-CTACACA
1 CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAAAACTAC-ACACA
70750221 CCACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCT
65 CCACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCT
* *
70750286 ACAAGCTAAAGCCAAGGTTCACTTAAAGGGAGAAAGTAAAATTTTTGCAAAAGCCCAGACTTGAA
130 ACAAGCTAAAGCCAAGGTTCACTTAAAGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAA
*
70750351 CCCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCTAATAAAGCAAACATGAAATT
195 CCCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCCAATAAAGCAAACATGAAATT
70750416 TGTGCCA
260 TGTGCCA
70750423 CTTTCTTGCT
Statistics
Matches: 255, Mismatches: 10, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
271 1 0.00
272 254 1.00
ACGTcount: A:0.37, C:0.28, G:0.12, T:0.24
Consensus pattern (272 bp):
CAAAATAAATACTCTTCTTACCTTGCCACAACTTGAACCTTAGACCTCAAGAAAACTACACACAC
CACCTACCACTGCACCATAAGCTCTTTTTGTGACACATTTTACCCACAAATATTTATAAGGCCTA
CAAGCTAAAGCCAAGGTTCACTTAAAGGGAAAAACTAAAATTTTTGCAAAAGCCCAGACTTGAAC
CCAGGCTTCTCAAACACTCCCAACCACACCCAAATCACTTAGCCAATAAAGCAAACATGAAATTT
GTGCCAAGGGAG
Found at i:70759746 original size:30 final size:30
Alignment explanation
Indices: 70759689--70759747 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
70759679 ATTCCTTAAA
* *
70759689 AATATTTACAAAAAGAGGCATTTAATTTTT
1 AATATTTACAAAAAGAGGCACTGAATTTTT
*
70759719 AATATTTACAGAAAGA-GCAACTGAATTTT
1 AATATTTACAAAAAGAGGC-ACTGAATTTT
70759748 GAAAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACTGAATTTTT
Found at i:70767511 original size:40 final size:40
Alignment explanation
Indices: 70767417--70767561 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
70767407 TACTCGAATG
*
70767417 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* * *
70767458 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
70767498 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
70767538 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
70767562 CTTGTGCGAG
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 60 0.67
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:70771876 original size:40 final size:40
Alignment explanation
Indices: 70771817--70771997 Score: 231
Period size: 40 Copynumber: 4.5 Consensus size: 40
70771807 TATTCGGATG
* * * *
70771817 ATATCCGGGCTAAGTCCCGAAGCCATCTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
70771857 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
70771897 ATATCCGGGCTAAATCTCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
70771937 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
70771977 ATATCC-GGCTAAGTGCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
70771998 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
39 13 0.11
40 107 0.88
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:70781964 original size:26 final size:26
Alignment explanation
Indices: 70781928--70781988 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
70781918 GGTGGCTGAG
70781928 TTGGTCTAGGTTGGGCATATGTGTTA
1 TTGGTCTAGGTTGGGCATATGTGTTA
70781954 TTGGTCTAGGTTGGGCATATGTGTTA
1 TTGGTCTAGGTTGGGCATATGTGTTA
70781980 TTGGGTCTA
1 TT-GGTCTA
70781989 TCCCCTTGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 28 0.82
27 6 0.18
ACGTcount: A:0.15, C:0.08, G:0.34, T:0.43
Consensus pattern (26 bp):
TTGGTCTAGGTTGGGCATATGTGTTA
Found at i:70783746 original size:15 final size:15
Alignment explanation
Indices: 70783726--70783763 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
70783716 GCCCCAATTT
70783726 TTGGGCCTAAAAGTA
1 TTGGGCCTAAAAGTA
70783741 TTGGGCCTAAAAGTA
1 TTGGGCCTAAAAGTA
70783756 TTGGGCCT
1 TTGGGCCT
70783764 TGAGTCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (15 bp):
TTGGGCCTAAAAGTA
Found at i:70787925 original size:22 final size:22
Alignment explanation
Indices: 70787899--70787942 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
70787889 GAAAATAATC
70787899 AAAATTAATAAAAATTAATTAT
1 AAAATTAATAAAAATTAATTAT
* *
70787921 AAAATTAATTAAAATTCATTAT
1 AAAATTAATAAAAATTAATTAT
70787943 GTTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (22 bp):
AAAATTAATAAAAATTAATTAT
Found at i:70787926 original size:12 final size:11
Alignment explanation
Indices: 70787899--70787934 Score: 56
Period size: 12 Copynumber: 3.3 Consensus size: 11
70787889 GAAAATAATC
70787899 AAAATTAA-TA
1 AAAATTAATTA
70787909 AAAATTAATTA
1 AAAATTAATTA
70787920 TAAAATTAATTA
1 -AAAATTAATTA
70787932 AAA
1 AAA
70787935 TTCATTATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 8 0.33
11 5 0.21
12 11 0.46
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATTA
Found at i:70787941 original size:10 final size:10
Alignment explanation
Indices: 70787890--70787941 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
70787880 AAATCTGTCG
*
70787890 AAAA-TAATC
1 AAAATTAATT
*
70787899 AAAATTAATA
1 AAAATTAATT
70787909 AAAATTAATTAT
1 AAAATTAA-T-T
70787921 AAAATTAATT
1 AAAATTAATT
*
70787931 AAAATTCATT
1 AAAATTAATT
70787941 A
1 A
70787942 TGTTAATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 23 0.62
11 2 0.05
12 8 0.22
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:70795887 original size:29 final size:30
Alignment explanation
Indices: 70795840--70795896 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
70795830 TACTTCGGCT
* *
70795840 AACTTGAAAGAATTACTCACTTCCATAAGG
1 AACTTGAAAGAATCACTCACCTCCATAAGG
*
70795870 AACTTTAAA-AATCACTCACCTCCATAA
1 AACTTGAAAGAATCACTCACCTCCATAA
70795897 CTTAAGCATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.26
Consensus pattern (30 bp):
AACTTGAAAGAATCACTCACCTCCATAAGG
Found at i:70797211 original size:48 final size:48
Alignment explanation
Indices: 70797155--70797415 Score: 267
Period size: 48 Copynumber: 5.7 Consensus size: 48
70797145 TACCATGGTT
* *
70797155 ATACATGTAACATGGAGCTAAGTGGATATACCACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
70797203 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
70797251 ATTCAT-TAACGTGGTACTAAGTGGATATACCACG---------GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
70797288 ATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * * * *
70797336 ATACATGTAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
*
70797384 ATTCAT-TAACGTGGTGCTAAGTGGATATACCA
1 ATACATGTAACGTGGTGCTAAGTGGATATACCA
70797416 TGGTTAAACA
Statistics
Matches: 173, Mismatches: 29, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
37 4 0.02
38 26 0.15
47 51 0.29
48 92 0.53
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:70797309 original size:38 final size:38
Alignment explanation
Indices: 70797257--70797466 Score: 141
Period size: 38 Copynumber: 5.0 Consensus size: 38
70797247 ATCGATTCAT
* *
70797257 TAACGTGGTACTAAGTGGATATACCACGGTTATACGTG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
* **
70797295 TAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTGATACATG
1 TAACGTGGTGCTAAGTGG--A-T--AT-A--CCAC-GGTT-ATACATG
* * * *
70797343 TAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCGATTCAT
1 TAACGTGGTGCTAAGTGGATATACCACGG-T---TATA-C-A-T--G
* *
70797390 TAACGTGGTGCTAAGTGGATATACCATGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
*
70797428 TAACGTGGTGCTAAGTGGATATGCCACGGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
70797466 T
1 T
70797467 TAATTTGAAA
Statistics
Matches: 132, Mismatches: 21, Indels: 38
0.69 0.11 0.20
Matches are distributed among these distances:
38 53 0.40
40 5 0.04
41 2 0.02
42 4 0.03
43 9 0.07
44 2 0.02
45 2 0.02
46 5 0.04
47 27 0.20
48 23 0.17
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACGGTTATACATG
Found at i:70797314 original size:85 final size:86
Alignment explanation
Indices: 70797203--70797374 Score: 238
Period size: 85 Copynumber: 2.0 Consensus size: 86
70797193 ACACATATTG
* * *
70797203 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCAT-TAACGTGGTA
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
*
70797267 CTAAGTGGATATACCACGGTT
66 CTAAGTGGATATACAACGGTT
* * * * *
70797288 ATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
* *
70797353 CTAATTGGATATGCAACGGTT
66 CTAAGTGGATATACAACGGTT
70797374 A
1 A
70797375 CATATATCGA
Statistics
Matches: 75, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 47 0.63
86 28 0.37
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (86 bp):
ATACATGTAACGTGGTGCTAAGTGGATATGCCACGATTACACATATCGATACATGTAACGTGGTA
CTAAGTGGATATACAACGGTT
Found at i:70797372 original size:133 final size:133
Alignment explanation
Indices: 70797129--70797464 Score: 555
Period size: 133 Copynumber: 2.5 Consensus size: 133
70797119 TGGAAAAACT
* *
70797129 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACATGGAGCTAAGTGGATATACCACGATTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
70797194 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
70797259 ACG
131 ACG
* * * * *
70797262 TGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATTCCATGATTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
70797327 CACATATTGATACATGTAACGTGGTGCTAATTGGATATGCAACGGTTACATATATCGATTCATTA
66 CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
70797392 ACG
131 ACG
* * *
70797395 TGGTGCTAAGTGGATATACCATGGTTAAACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
1 TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
*
70797460 TACAT
66 CACAT
70797465 GTTAATTTGA
Statistics
Matches: 186, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 186 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (133 bp):
TGGTGCTAAGTGGATATACCATGGTTATACATGTAACGTGGTGCTAAGTGGATATACCACGATTA
CACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCAACGGTTACATATATCGATTCATTA
ACG
Found at i:70803413 original size:40 final size:40
Alignment explanation
Indices: 70803319--70803463 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
70803309 TACTCGAATG
*
70803319 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
70803360 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
70803400 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
70803440 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
70803464 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:70805617 original size:38 final size:38
Alignment explanation
Indices: 70805566--70805757 Score: 159
Period size: 38 Copynumber: 4.6 Consensus size: 38
70805556 TGGAAAAACA
70805566 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
** *
70805604 TGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGTAACG
1 TGGTGCTAAGTGG--ATA-TAC-----CAC-GGTT-ATACGTGTAACG
* *
70805652 TGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTCCTTAACG
1 TGGTGCTAAGTGGATATACCACGG-T---TATA-CG--T--GTAACG
*
70805699 TGGTACTAAGTGGATATACCACGGTTATACGTGTAACG
1 TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
70805737 TGGTGCTAAGTGGATATACCA
1 TGGTGCTAAGTGGATATACCA
70805758 TGATTACACA
Statistics
Matches: 123, Mismatches: 12, Indels: 38
0.71 0.07 0.22
Matches are distributed among these distances:
38 38 0.31
40 8 0.07
41 3 0.02
42 5 0.04
43 6 0.05
45 3 0.02
46 7 0.06
47 29 0.24
48 24 0.20
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
TGGTGCTAAGTGGATATACCACGGTTATACGTGTAACG
Found at i:70805668 original size:48 final size:48
Alignment explanation
Indices: 70805592--70805863 Score: 289
Period size: 48 Copynumber: 5.9 Consensus size: 48
70805582 TACCACGGTT
* *
70805592 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
70805640 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
70805688 ATTCCT-TAACGTGGTACTAAGTGGATATACCACG---------GTT-
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* *
70805725 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * *
70805773 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
* * * *
70805821 ATTCAT-TAACATGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACAT
70805864 GTAACATGGT
Statistics
Matches: 186, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
37 4 0.02
38 27 0.15
47 61 0.33
48 94 0.51
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGATTACACATATTG
Found at i:70805715 original size:95 final size:95
Alignment explanation
Indices: 70805592--70805863 Score: 287
Period size: 95 Copynumber: 3.0 Consensus size: 95
70805582 TACCACGGTT
*
70805592 ATACGTGTAACGTGGTGCTAAGTGGATATACTACGATTACACATATTGATACATGTAACGTGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACTACG-TTACACATATTGATACATGTAACGTGGTG
* *
70805657 CTAAGTGGATATGCCACGGTTACATATATCG
65 CTAAGTGGATATACCACGGTTACACATATCG
* * * ** *
70805688 ATTCCT-TAACGTGGTACTAAGTGG--ATA-TAC----CAC-GGTT-ATACGTGTAACGTGGTGC
1 ATACATGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGC
* * *
70805743 TAAGTGGATATACCATGATTACACATATTG
66 TAAGTGGATATACCACGGTTACACATATCG
* * * * *
70805773 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCAT-TAACATGGTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACTAC-GTTACACATATTGATACATGTAACGTGGTG
*
70805837 CTAAGTGGATATACCACGGTTAAACAT
65 CTAAGTGGATATACCACGGTTACACAT
70805864 GTAACATGGT
Statistics
Matches: 140, Mismatches: 25, Indels: 23
0.74 0.13 0.12
Matches are distributed among these distances:
85 46 0.33
86 19 0.14
87 3 0.02
88 2 0.01
89 2 0.01
92 3 0.02
93 3 0.02
94 2 0.01
95 52 0.37
96 8 0.06
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31
Consensus pattern (95 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACTACGTTACACATATTGATACATGTAACGTGGTGC
TAAGTGGATATACCACGGTTACACATATCG
Found at i:70805809 original size:133 final size:133
Alignment explanation
Indices: 70805562--70805886 Score: 569
Period size: 133 Copynumber: 2.4 Consensus size: 133
70805552 GGAATGGAAA
*
70805562 AACATGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACTACG
1 AACATGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
70805627 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
*
70805692 CTT
131 ATT
* * *
70805695 AACGTGGTACTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCATG
1 AACATGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
*
70805760 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTC
66 ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
70805825 ATT
131 ATT
* * *
70805828 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGTAACATGGTGCTAAGTGGATAT
1 AACATGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATAT
70805887 GACATGGTTA
Statistics
Matches: 181, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
133 181 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (133 bp):
AACATGGTGCTAAGTGGATATACCACGGTTATACGTGTAACGTGGTGCTAAGTGGATATACCACG
ATTACACATATTGATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATCGATTC
ATT
Found at i:70805878 original size:38 final size:38
Alignment explanation
Indices: 70805827--70805903 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 38
70805817 ATTGATTCAT
70805827 TAACATGGTGCTAAGTGGATAT-ACCACGGTTAAACATG
1 TAACATGGTGCTAAGTGGATATGA-CACGGTTAAACATG
* *
70805865 TAACATGGTGCTAAGTGGATATGACATGGTTATACATG
1 TAACATGGTGCTAAGTGGATATGACACGGTTAAACATG
70805903 T
1 T
70805904 TAATTTGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
38 35 0.97
39 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (38 bp):
TAACATGGTGCTAAGTGGATATGACACGGTTAAACATG
Found at i:70809474 original size:46 final size:46
Alignment explanation
Indices: 70809338--70809464 Score: 218
Period size: 46 Copynumber: 2.8 Consensus size: 46
70809328 TATATATACA
* * *
70809338 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
70809384 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
70809430 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
70809465 CGCCACATAT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:70809519 original size:47 final size:47
Alignment explanation
Indices: 70809484--70809634 Score: 284
Period size: 47 Copynumber: 3.2 Consensus size: 47
70809474 TATACACTTC
**
70809484 CACATTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
70809531 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
70809578 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
70809625 CACATTCATC
1 CACATTCATC
70809635 TCATAAAATC
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.34
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTT
Found at i:70809566 original size:22 final size:22
Alignment explanation
Indices: 70809538--70809613 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
70809528 GTTCACATTC
70809538 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
70809560 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
70809584 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
70809607 ATCACAT
1 ATCACAT
70809614 ATATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:70812690 original size:116 final size:116
Alignment explanation
Indices: 70812550--70812788 Score: 406
Period size: 116 Copynumber: 2.1 Consensus size: 116
70812540 TTACCATATT
* * *
70812550 ACTATAACACACTTTTCTGGTAAGTCATGGTATGTATTACTAAATTATCAAGAGGTTATTCTTAA
1 ACTATAACACACTTTTCTAGTAAGTCATGGTATGTATTACCAAATTATCAAGAGGTTATTCTAAA
* *
70812615 TATAAGTTCTAATTAAACCATTCATTTTCTCATCATTTTCGTAGAAAATGA
66 TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
* *
70812666 ACTATAACACACTTTTCTATTAAGTCATGGTATGTATTACCAAATTATCGAGAGGTTATTCTAAA
1 ACTATAACACACTTTTCTAGTAAGTCATGGTATGTATTACCAAATTATCAAGAGGTTATTCTAAA
70812731 TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
66 TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
*
70812782 ATTATAA
1 ACTATAA
70812789 TTTTCATAAT
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
116 115 1.00
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (116 bp):
ACTATAACACACTTTTCTAGTAAGTCATGGTATGTATTACCAAATTATCAAGAGGTTATTCTAAA
TATAAGTTCTAATTAAACCATTCATTGTCTCATCATTTTCATAGAAAATGA
Found at i:70817577 original size:40 final size:40
Alignment explanation
Indices: 70817519--70817720 Score: 192
Period size: 40 Copynumber: 5.0 Consensus size: 40
70817509 GAAAAAGCTG
* * *
70817519 CTGAATGCACATGT-GTGCCCCTGTTTGTACTTTGGTACCC
1 CTGAATGCACA-GTCGTGCCCCTGTTTGCACTTTAGTGCCC
* * * *
70817559 CTGAATGCACAGACGTGCCCCTATATGCACTTCAGTGCCC
1 CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
*
70817599 CTGAATGCACATTCGTGCCCCTGTTTGCACTTTAGTGCCC
1 CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
* * * * * *
70817639 CTAAATGCACATTTGTGCCCCTGTTTGAACTTTGGT-TCC
1 CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
* * * * * *
70817678 ATTAATCACACATTCGTGCTCCTGATTGCACTTTAGTGCCC
1 CTGAAT-GCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
70817719 CT
1 CT
70817721 TTTATGCATT
Statistics
Matches: 132, Mismatches: 27, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
39 7 0.05
40 122 0.92
41 3 0.02
ACGTcount: A:0.18, C:0.30, G:0.19, T:0.33
Consensus pattern (40 bp):
CTGAATGCACAGTCGTGCCCCTGTTTGCACTTTAGTGCCC
Found at i:70817579 original size:20 final size:20
Alignment explanation
Indices: 70817519--70817661 Score: 112
Period size: 20 Copynumber: 7.2 Consensus size: 20
70817509 GAAAAAGCTG
70817519 CTGAATGCACATGT-GTGCCC
1 CTGAATGCACAT-TCGTGCCC
** * * * *
70817539 CTGTTTGTACTTTGGTACCC
1 CTGAATGCACATTCGTGCCC
**
70817559 CTGAATGCACAGACGTGCCC
1 CTGAATGCACATTCGTGCCC
70817579 CT-ATATGCAC-TTCAGTGCCC
1 CTGA-ATGCACATTC-GTGCCC
70817599 CTGAATGCACATTCGTGCCC
1 CTGAATGCACATTCGTGCCC
** * *
70817619 CTGTTTGCACTTTAGTGCCC
1 CTGAATGCACATTCGTGCCC
* *
70817639 CTAAATGCACATTTGTGCCC
1 CTGAATGCACATTCGTGCCC
70817659 CTG
1 CTG
70817662 TTTGAACTTT
Statistics
Matches: 93, Mismatches: 25, Indels: 10
0.73 0.20 0.08
Matches are distributed among these distances:
19 3 0.03
20 86 0.92
21 4 0.04
ACGTcount: A:0.18, C:0.31, G:0.20, T:0.30
Consensus pattern (20 bp):
CTGAATGCACATTCGTGCCC
Found at i:70835057 original size:49 final size:49
Alignment explanation
Indices: 70834997--70835178 Score: 247
Period size: 49 Copynumber: 3.7 Consensus size: 49
70834987 TCTGGTACGA
* * *
70834997 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* * * * * *
70835046 TAGTAGCCTGCACCTAGTACTACACATGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-C-CAATTATCCGGTACACG
70835097 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* *
70835146 TAGTAGCCTGCAATTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
70835179 TCACAATAGT
Statistics
Matches: 115, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 72 0.63
50 2 0.02
51 41 0.36
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:70835109 original size:100 final size:99
Alignment explanation
Indices: 70834990--70835176 Score: 311
Period size: 100 Copynumber: 1.9 Consensus size: 99
70834980 GAAGCTATCT
*
70834990 GGTACGATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACACGTAGTAGCCT
1 GGTACGATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
* *
70835055 GCACCTAGTACTACACATGTGATCACAGTTTTCG
66 GCAACTAGTACTACACACGTGATCACAGTTTTCG
* *
70835089 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCC
1 GGTACG-ATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCC
*
70835154 TGCAATTAGTACTACACACGTGA
65 TGCAACTAGTACTACACACGTGA
70835177 CCTCACAATA
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
99 6 0.07
100 75 0.93
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (99 bp):
GGTACGATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGCCT
GCAACTAGTACTACACACGTGATCACAGTTTTCG
Found at i:70843910 original size:49 final size:47
Alignment explanation
Indices: 70843644--70844047 Score: 623
Period size: 47 Copynumber: 8.6 Consensus size: 47
70843634 GCCCTTCGGA
* * * * ***
70843644 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACCCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70843691 C-TGTCACATATATACAC-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70843736 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70843783 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70843830 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70843877 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70843926 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70843975 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70844022 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
70844048 CACAATTATC
Statistics
Matches: 332, Mismatches: 21, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
45 23 0.07
46 28 0.08
47 187 0.56
49 94 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70847992 original size:16 final size:17
Alignment explanation
Indices: 70847963--70847994 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
70847953 TTATAAACAC
70847963 ATATCAATTATTTCATT
1 ATATCAATTATTTCATT
70847980 ATATCAA-TATTTCAT
1 ATATCAATTATTTCAT
70847995 ATACCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATCAATTATTTCATT
Found at i:70849288 original size:30 final size:30
Alignment explanation
Indices: 70849254--70849314 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
70849244 TCCTTAACTC
70849254 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
70849284 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
70849314 A
1 A
70849315 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:70852952 original size:67 final size:65
Alignment explanation
Indices: 70852766--70852972 Score: 206
Period size: 67 Copynumber: 3.1 Consensus size: 65
70852756 TATAGTTCGT
* * * *
70852766 CTCTCTTGTAC-ACATGGTGAACACTTAGTACCACCCATGTGACCTAGC-CA-GTTTATCTCGTA
1 CTCTCTTGT-CTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTCACATATATCTCGTA
70852828 G
65 G
* * * * *
70852829 CTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCT-ACATATATCCCG
1 CTCTCTTGTCTACATGGTG---TACACTTAGTACCACCCATGCGACCTAGCTCACATATATCTCG
70852893 TAG
63 TAG
* * * *
70852896 CTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACAACATAATGTCTTG
1 CTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCT-C-ACAT-ATATCTCG
70852961 TAG
63 TAG
70852964 CTCTCTTGT
1 CTCTCTTGT
70852973 ACACATGATG
Statistics
Matches: 116, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 17 0.15
64 24 0.21
66 24 0.21
67 33 0.28
68 17 0.15
ACGTcount: A:0.23, C:0.29, G:0.17, T:0.31
Consensus pattern (65 bp):
CTCTCTTGTCTACATGGTGTACACTTAGTACCACCCATGCGACCTAGCTCACATATATCTCGTAG
Found at i:70860604 original size:42 final size:42
Alignment explanation
Indices: 70860557--70860671 Score: 135
Period size: 42 Copynumber: 2.7 Consensus size: 42
70860547 GGGATCTTAC
*
70860557 ATCGATGCCATATCCTAGATATGGTCTTATACGAAA-TCTCAT
1 ATCGATGCCATATCCTAGATATGGTCTTACAC-AAATTCTCAT
* * * **
70860599 TTCGATGCCATGTCCCAGACGTGGTCTTACACAAATTCTCAT
1 ATCGATGCCATATCCTAGATATGGTCTTACACAAATTCTCAT
*
70860641 ATC-AGCGCCATATCCTAGATATGGTCTTACA
1 ATCGA-TGCCATATCCTAGATATGGTCTTACA
70860672 TGATAACACA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 4 0.07
42 55 0.93
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (42 bp):
ATCGATGCCATATCCTAGATATGGTCTTACACAAATTCTCAT
Found at i:70864479 original size:27 final size:26
Alignment explanation
Indices: 70864435--70864486 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70864425 CTCGCTGCAA
*
70864435 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
70864462 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
70864487 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:70872668 original size:40 final size:40
Alignment explanation
Indices: 70872613--70872770 Score: 235
Period size: 40 Copynumber: 4.0 Consensus size: 40
70872603 AATATATATA
* *
70872613 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
**
70872653 TATAACCGGGTTAAGTTTCGAAGGCATTCGTGCAGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
* *
70872693 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCCGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
* * *
70872733 TATAACCGGGTTAAGTCCTGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCAGGTT
70872771 GTTACATCCG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 106 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCAGGTTAT
Found at i:70872796 original size:80 final size:80
Alignment explanation
Indices: 70872628--70872788 Score: 189
Period size: 80 Copynumber: 2.0 Consensus size: 80
70872618 CCGGGTTAAG
* *
70872628 TCCCGAAGGCATTCGTGCGGGTTACTATAACCGGGTTAAGTTTCGAAGGCATTCGTGCAGGTTAT
1 TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCTCGAAGGCATTCGTGCAGGTTAT
* * * ** *
70872693 TATAACTGGGTTAAG
66 TACAACCGAGCCAAA
* * * *
70872708 TCCCGAAGGCATTCGTGCCGGTTATTATAACCGGGTTAAGTC-CTGAAGGCATTTGTGCTGGTTG
1 TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCTC-GAAGGCATTCGTGCAGGTTA
*
70872772 TTACATCCGAGCCAAA
65 TTACAACCGAGCCAAA
70872788 T
1 T
70872789 TTCGAAGGTA
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
79 1 0.01
80 66 0.99
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (80 bp):
TCCCGAAGGCATTCGTGCCGGTTACTATAACCGGGTTAAGTCTCGAAGGCATTCGTGCAGGTTAT
TACAACCGAGCCAAA
Found at i:70881589 original size:42 final size:42
Alignment explanation
Indices: 70881542--70881702 Score: 153
Period size: 42 Copynumber: 3.7 Consensus size: 42
70881532 GGGATCTTAC
*
70881542 ATCGATGCCATATCCCAGATATGGTCTTATACGAAATCTCAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT
* * ** * *
70881584 TTCGATGCCATGTCCCAGACGTGGTCTTACACGAATTTTCAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT
* * * *
70881626 ATCAACGCCATATCCCAGATATGGTCTTACATGATAA-CACAT
1 ATCGATGCCATATCCCAGATATGGTCTTACACGA-AATCTCAT
70881668 ACCGATGCCGATGCCATATCCCAGATATGGTCTTA
1 ----AT--CGATGCCATATCCCAGATATGGTCTTA
70881703 TACGGGATAT
Statistics
Matches: 93, Mismatches: 19, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 65 0.70
43 1 0.01
46 2 0.02
48 25 0.27
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATCGATGCCATATCCCAGATATGGTCTTACACGAAATCTCAT
Found at i:70881674 original size:84 final size:84
Alignment explanation
Indices: 70881507--70881676 Score: 200
Period size: 84 Copynumber: 2.0 Consensus size: 84
70881497 GATGCCAAGA
* * * * * *
70881507 CCATGTTCCAGACGTGGTCTTACATGGGATCTTACATCGATGCCATATCCCAGATATGGTCTTAT
1 CCATGTCCCAGACGTGGTCTTACATCGAATCTTACATCAACGCCATATCCCAGATATGGTCTTAC
* **
70881572 ACGAAATCTCATTTCGATG
66 ACGAAATCACATACCGATG
* *
70881591 CCATGTCCCAGACGTGGTCTTACA-CGAATTTTCATATCAACGCCATATCCCAGATATGGTCTTA
1 CCATGTCCCAGACGTGGTCTTACATCGAATCTT-ACATCAACGCCATATCCCAGATATGGTCTTA
*
70881655 CATGATAA-CACATACCGATG
65 CACGA-AATCACATACCGATG
70881675 CC
1 CC
70881677 GATGCCATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
83 5 0.07
84 65 0.90
85 2 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.29
Consensus pattern (84 bp):
CCATGTCCCAGACGTGGTCTTACATCGAATCTTACATCAACGCCATATCCCAGATATGGTCTTAC
ACGAAATCACATACCGATG
Found at i:70886161 original size:46 final size:47
Alignment explanation
Indices: 70886104--70886274 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 47
70886094 ACGACTCTTA
70886104 GCCGATGCATGTCCAGACATGTCTTACACTGGCTA-TCATCATCGAG
1 GCCGATGCATGTCCAGACATGTCTTACACTGGCTACTCATCATCGAG
* ** * *
70886150 GCCGATGCATGTCTCA-ACATATCTTACACT-AATACTCATC-TCTAC
1 GCCGATGCATGTC-CAGACATGTCTTACACTGGCTACTCATCATCGAG
* ** * *
70886195 ACCGATGCATGTCCAGACATGGTCTTACGTTGGC-ACTCATAAT-GTG
1 GCCGATGCATGTCCAGACAT-GTCTTACACTGGCTACTCATCATCGAG
70886241 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGT-CCAGACATGTCTTACACTGGC
70886275 ACACAAAAAT
Statistics
Matches: 100, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
44 2 0.02
45 21 0.21
46 66 0.66
47 11 0.11
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCATGTCCAGACATGTCTTACACTGGCTACTCATCATCGAG
Found at i:70886244 original size:91 final size:92
Alignment explanation
Indices: 70886105--70886271 Score: 241
Period size: 91 Copynumber: 1.8 Consensus size: 92
70886095 CGACTCTTAG
* *
70886105 CCGATGCATGTCCAGACATGTCTTACACTGGCTATCATCATCGAGGCCGATGCATGTCTCA-ACA
1 CCGATGCATGTCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGACA
70886169 TATCTTACACTAATACTCATCTCTACA
66 TATCTTACACTAATACTCATCTCTACA
** *
70886196 CCGATGCATGTCCAGACATGGTCTTACGTTGGC-ACTCATAAT-GTGGCCGATGCATGTCCCAGA
1 CCGATGCATGTCCAGACAT-GTCTTACACTGGCTA-TCATAATCGAGGCCGATGCATGTCCCAGA
*
70886259 CATGTCTTACACT
64 CATATCTTACACT
70886272 GGCACACAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
91 37 0.55
92 30 0.45
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (92 bp):
CCGATGCATGTCCAGACATGTCTTACACTGGCTATCATAATCGAGGCCGATGCATGTCCCAGACA
TATCTTACACTAATACTCATCTCTACA
Found at i:70901983 original size:49 final size:47
Alignment explanation
Indices: 70901784--70902055 Score: 463
Period size: 47 Copynumber: 5.7 Consensus size: 47
70901774 ATGATAGTAA
*
70901784 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
* *
70901831 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGGTAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
70901878 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
70901925 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
*
70901974 GGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAG
70902023 GGCCTAATGGCCGATGTGATGAATGTGATAAGT
1 GGCCTAATGGCCGATGTGATGAATGTGA-AAGT
70902056 CCCGAAGGGC
Statistics
Matches: 217, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
47 124 0.57
49 89 0.41
50 4 0.02
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAG
Found at i:70902229 original size:37 final size:37
Alignment explanation
Indices: 70902173--70902251 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
70902163 CTGAGCTCTA
* * *
70902173 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
70902210 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
70902247 AAGAC
1 AAGAC
70902252 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.