Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 222 of 295
Found at i:70904281 original size:20 final size:19
Alignment explanation
Indices: 70904248--70904288 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
70904238 GTCCCCTGTA
*
70904248 TTTTCAAAAATTTCCTAAG
1 TTTTCAAAAATTTCCCAAG
*
70904267 TTTTCTAAAAGTTTCCCAAG
1 TTTTC-AAAAATTTCCCAAG
70904287 TT
1 TT
70904289 ATCAGCTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.44
Consensus pattern (19 bp):
TTTTCAAAAATTTCCCAAG
Found at i:70910140 original size:20 final size:20
Alignment explanation
Indices: 70910115--70910159 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
70910105 CACCAAAGAA
70910115 GTTCTGAGATGATTTCAATC
1 GTTCTGAGATGATTTCAATC
70910135 GTTCTGAGATGATTTCAATC
1 GTTCTGAGATGATTTCAATC
*
70910155 ATTCT
1 GTTCT
70910160 AGAGCCACTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (20 bp):
GTTCTGAGATGATTTCAATC
Found at i:70911454 original size:23 final size:21
Alignment explanation
Indices: 70911428--70911475 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
70911418 TAAGCAATTT
70911428 ACTAACATGCTTCCCACAATAAA
1 ACTAACA--CTTCCCACAATAAA
70911451 ACT-A-ACTTCCCACAATAAA
1 ACTAACACTTCCCACAATAAA
70911470 ACTAAC
1 ACTAAC
70911476 TCATTTGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
19 17 0.74
20 1 0.04
21 1 0.04
22 1 0.04
23 3 0.13
ACGTcount: A:0.46, C:0.31, G:0.02, T:0.21
Consensus pattern (21 bp):
ACTAACACTTCCCACAATAAA
Found at i:70911461 original size:19 final size:19
Alignment explanation
Indices: 70911437--70911476 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
70911427 TACTAACATG
70911437 CTTCCCACAATAAAACTAA
1 CTTCCCACAATAAAACTAA
70911456 CTTCCCACAATAAAACTAA
1 CTTCCCACAATAAAACTAA
70911475 CT
1 CT
70911477 CATTTGTACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.23
Consensus pattern (19 bp):
CTTCCCACAATAAAACTAA
Found at i:70912379 original size:49 final size:48
Alignment explanation
Indices: 70912307--70912538 Score: 241
Period size: 49 Copynumber: 4.7 Consensus size: 48
70912297 CTGGTACGCA
* *
70912307 TAGTAGCCTGCACTTAGAACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTAT-CAGTACACG
* ** *
70912356 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCAG-TACACG
* * * *
70912406 TAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGTTATCAGGTACGCAG
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCA-GTACAC-G
** * **
70912458 -AGTAGCCTGCACTTAGTACTACACATACAACCAATTATTTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTA-TCAGTACACG
*
70912506 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
70912539 TCACAATAGC
Statistics
Matches: 150, Mismatches: 25, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 68 0.45
50 46 0.31
51 33 0.22
52 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCAGTACACG
Found at i:70912530 original size:100 final size:99
Alignment explanation
Indices: 70912295--70912538 Score: 287
Period size: 100 Copynumber: 2.5 Consensus size: 99
70912285 AGCCGAAGCT
* * * * *
70912295 ATCTGGTACGCATAGTAGCCTGCACTTAGAACTACACATGCGACCAATTATCCAGTACACGTAGT
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACGTAGT
***
70912360 AGCCTGCACTTAGTACTACACACGTGACCTAACC
66 AGCCTGCACTTAGTACTACACACACAACCTAACC
* * * *
70912394 ATCTGATACACGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGTTAT-CAGGTACGCAG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCA-GTACAC-G
* **
70912458 -AGTAGCCTGCACTTAGTACTACACATACAACC-AATT
62 TAGTAGCCTGCACTTAGTACTACACACACAACCTAACC
*
70912494 ATTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
70912539 TCACAATAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
99 37 0.30
100 47 0.39
101 37 0.30
102 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (99 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCAGTACACGTAGT
AGCCTGCACTTAGTACTACACACACAACCTAACC
Found at i:70925502 original size:9 final size:9
Alignment explanation
Indices: 70925485--70925559 Score: 141
Period size: 9 Copynumber: 8.3 Consensus size: 9
70925475 TGGACTCCGA
70925485 ATGCCTAGT
1 ATGCCTAGT
*
70925494 ATACCTAGT
1 ATGCCTAGT
70925503 ATGCCTAGT
1 ATGCCTAGT
70925512 ATGCCTAGT
1 ATGCCTAGT
70925521 ATGCCTAGT
1 ATGCCTAGT
70925530 ATGCCTAGT
1 ATGCCTAGT
70925539 ATGCCTAGT
1 ATGCCTAGT
70925548 ATGCCTAGT
1 ATGCCTAGT
70925557 ATG
1 ATG
70925560 ACAGGATTGC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 64 1.00
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (9 bp):
ATGCCTAGT
Found at i:70932422 original size:14 final size:14
Alignment explanation
Indices: 70932403--70932432 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
70932393 TTTATCTCAT
70932403 TTGTAGGTATAAGG
1 TTGTAGGTATAAGG
70932417 TTGTAGGTATAAGG
1 TTGTAGGTATAAGG
70932431 TT
1 TT
70932433 AAGCATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (14 bp):
TTGTAGGTATAAGG
Found at i:70934006 original size:47 final size:47
Alignment explanation
Indices: 70933832--70934007 Score: 262
Period size: 47 Copynumber: 3.7 Consensus size: 47
70933822 CCCTTCGGGA
* * * * *
70933832 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
* * * *
70933879 CCTGTCACATATATACACTTTCACATTCATCACTTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
*
70933926 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
70933973 CTTATCACATATATACACTTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATCCATCACAT
70934008 AGAATCCTAA
Statistics
Matches: 117, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 117 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGC
Found at i:70937463 original size:40 final size:40
Alignment explanation
Indices: 70937431--70937652 Score: 311
Period size: 40 Copynumber: 5.6 Consensus size: 40
70937421 CCAGCATGAT
* * * * *
70937431 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCAC-AA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*** *
70937470 TGCTCTTCGGGGTTTAGCACGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
* * *
70937510 TGCTCTTTGAAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
70937550 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
*
70937590 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
70937630 TGCTCTTCGGAACTTAGCCCGGA
1 TGCTCTTCGGAACTTAGCCCGGA
70937653 CATCATTCGA
Statistics
Matches: 165, Mismatches: 17, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 30 0.18
40 135 0.82
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
Found at i:70937999 original size:29 final size:29
Alignment explanation
Indices: 70937960--70938039 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 29
70937950 CTTAATAATC
* *
70937960 AACCGCGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCAAGCA-TTTCA
*
70937990 AACTCGCACACTTAGTGCCAAGCATTTCA
1 AACCCGCACACTTAGTGCCAAGCATTTCA
*
70938019 AGCCCGCACACTTAGTGCCAA
1 AACCCGCACACTTAGTGCCAA
70938040 TCTCACAACC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.23
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCAAGCATTTCA
Found at i:70938081 original size:43 final size:43
Alignment explanation
Indices: 70938020--70938165 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
70938010 AGCATTTCAA
70938020 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70938063 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
* *
70938106 GCCCGTACACTTAGTGCCAACCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
70938149 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
70938166 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:70939664 original size:47 final size:47
Alignment explanation
Indices: 70939586--70939855 Score: 423
Period size: 47 Copynumber: 5.7 Consensus size: 47
70939576 CCCTTCGGGA
* * * * * *
70939586 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
70939633 CCTGTCACATATATACACTTTCACATTCATCACATAGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70939680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
70939727 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
70939774 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
70939821 CTTATCACATATATACACTTTCCCATCCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
70939856 AGAATCCTAA
Statistics
Matches: 206, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 206 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:70943867 original size:27 final size:26
Alignment explanation
Indices: 70943819--70943878 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
70943809 GTGAGGCTGC
*
70943819 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
70943846 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
70943872 CAGATAT
1 CAGATAT
70943879 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70943967 original size:27 final size:26
Alignment explanation
Indices: 70943919--70943970 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
70943909 GCGAGGCTGC
*
70943919 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
70943945 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
70943971 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:70959296 original size:30 final size:30
Alignment explanation
Indices: 70959260--70959321 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
70959250 GCTAAAAGCT
70959260 TCTAGAACTCAAGTTTTGCAACTTATTCAA
1 TCTAGAACTCAAGTTTTGCAACTTATTCAA
70959290 TCTAGAACTCAAGTTTTGCAACTTATTCAA
1 TCTAGAACTCAAGTTTTGCAACTTATTCAA
70959320 TC
1 TC
70959322 ATAAAATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.37
Consensus pattern (30 bp):
TCTAGAACTCAAGTTTTGCAACTTATTCAA
Found at i:70962181 original size:13 final size:13
Alignment explanation
Indices: 70962163--70962210 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
70962153 GACACACGGG
70962163 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
*
70962176 CGTGTGTGACACAGG-
1 CGTGTGT--C-TAGGC
70962191 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
70962204 CGTGTGT
1 CGTGTGT
70962211 GACACACGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 3 0.10
13 15 0.52
15 8 0.28
16 3 0.10
ACGTcount: A:0.10, C:0.21, G:0.40, T:0.29
Consensus pattern (13 bp):
CGTGTGTCTAGGC
Found at i:70962195 original size:28 final size:28
Alignment explanation
Indices: 70962156--70962216 Score: 113
Period size: 28 Copynumber: 2.2 Consensus size: 28
70962146 ATGGTTAGAC
*
70962156 ACACGGGCGTGTGTCTAGGCCGTGTGTG
1 ACACAGGCGTGTGTCTAGGCCGTGTGTG
70962184 ACACAGGCGTGTGTCTAGGCCGTGTGTG
1 ACACAGGCGTGTGTCTAGGCCGTGTGTG
70962212 ACACA
1 ACACA
70962217 CGGCTCCCTC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.16, C:0.23, G:0.38, T:0.23
Consensus pattern (28 bp):
ACACAGGCGTGTGTCTAGGCCGTGTGTG
Found at i:70965018 original size:30 final size:30
Alignment explanation
Indices: 70964970--70965030 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
70964960 TTCCCGAGCC
*
70964970 TAGGGGCAAAAGTTTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
70965000 TAGGGGCAAAA-TGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGT-GTAATTATGCAAAAGTT
70965030 T
1 T
70965031 GTATTAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 1 0.04
30 26 0.96
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:70965749 original size:49 final size:50
Alignment explanation
Indices: 70965669--70965896 Score: 307
Period size: 49 Copynumber: 4.6 Consensus size: 50
70965659 AGCTATTGTG
*
70965669 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
70965719 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
70965769 CGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
70965819 AGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
70965869 -GGTCGCATGTGTAGTACTAAGTGCAGGC
1 AGGTCACATGTGTAGTACTAAGTGCAGGC
70965897 AATTGTGTAT
Statistics
Matches: 152, Mismatches: 24, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
49 67 0.44
50 46 0.30
51 39 0.26
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:70966456 original size:21 final size:21
Alignment explanation
Indices: 70966432--70966476 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
70966422 TGAGATAAGT
70966432 AAATTTTAGTGAAGAAAGGTC
1 AAATTTTAGTGAAGAAAGGTC
70966453 AAATTTTAGTGAAGAAAGGTC
1 AAATTTTAGTGAAGAAAGGTC
70966474 AAA
1 AAA
70966477 GCTGTTAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (21 bp):
AAATTTTAGTGAAGAAAGGTC
Found at i:70971072 original size:100 final size:101
Alignment explanation
Indices: 70970937--70971129 Score: 280
Period size: 100 Copynumber: 1.9 Consensus size: 101
70970927 TTAATAATGT
* * * *
70970937 CATAACTCAGTTATGGTCTTATCATCAGAACGCCATAGCATAGTTATGGTCTTACATGTATACAC
1 CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
70971002 TACCATGGTCAAACCATGGTATTACATCCATAGTTC
66 TACCATGGTCAAACCATGGTATTACATCCATAGTTC
* * *
70971038 CATAACT-AGTTATGGTTTTATCATCAAAATGCCATAGCCCAGCTATGGTCTTACATATATACAC
1 CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
* ** *
70971102 TGCCATGGTCCCACCATGGTCTTACATC
66 TACCATGGTCAAACCATGGTATTACATC
70971130 TAAATCATTG
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 74 0.91
101 7 0.09
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
CATAACTCAGTTATGGTCTTATCATCAAAACGCCATAGCACAGCTATGGTCTTACATATATACAC
TACCATGGTCAAACCATGGTATTACATCCATAGTTC
Found at i:70971107 original size:35 final size:35
Alignment explanation
Indices: 70971067--70971147 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
70971057 ATCATCAAAA
* *
70971067 TGCCATAGCCCAGCTATGGTCTTACATATATA-CAC
1 TGCCATAGCCCA-CCATGGTCTTACATATAAATCAC
* * *
70971102 TGCCATGGTCCCACCATGGTCTTACATCTAAATCAT
1 TGCCATAG-CCCACCATGGTCTTACATATAAATCAC
70971138 TGCCATAGCC
1 TGCCATAGCC
70971148 TCACTACAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
35 25 0.66
36 13 0.34
ACGTcount: A:0.26, C:0.31, G:0.15, T:0.28
Consensus pattern (35 bp):
TGCCATAGCCCACCATGGTCTTACATATAAATCAC
Found at i:70979223 original size:25 final size:24
Alignment explanation
Indices: 70979186--70979258 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 24
70979176 CATGTAAGAG
70979186 AATTCTCTAGAAAGCCTTTGTGGCA
1 AATTCTCT-GAAAGCCTTTGTGGCA
* *
70979211 AATTCTCTCGAAAGCCTTTATGGCT
1 AATTCTCT-GAAAGCCTTTGTGGCA
* *
70979236 AATACTCTGTAAGGCCTTTGTGG
1 AATTCTCTG-AAAGCCTTTGTGG
70979259 TGAACTCTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (24 bp):
AATTCTCTGAAAGCCTTTGTGGCA
Found at i:70981408 original size:40 final size:40
Alignment explanation
Indices: 70981290--70981474 Score: 223
Period size: 40 Copynumber: 4.7 Consensus size: 40
70981280 TTCTAGCACC
** * * * *
70981290 AGCCTGCGGGAATTTAAACCCGG-TATA-ATACCAGCTCGT
1 AGCCTGCGGGTCTTTAAGCCCGGATA-ACATTCCAGCACGA
* *
70981329 AGCCTGCGGGTCTCT-AGCCTGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
* * *
70981368 AGCCTGCGGGTTTTTAAGCCCGGATAACATTCTAGGACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
70981408 AGCCTGTGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
1 AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
*
70981448 AGCCTGTGGGTCTTTAAGCCCGGATAA
1 AGCCTGCGGGTCTTTAAGCCCGGATAA
70981475 TACCTCAAGT
Statistics
Matches: 126, Mismatches: 17, Indels: 5
0.85 0.11 0.03
Matches are distributed among these distances:
38 6 0.05
39 36 0.29
40 84 0.67
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.23
Consensus pattern (40 bp):
AGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCACGA
Found at i:70991406 original size:40 final size:40
Alignment explanation
Indices: 70991323--70991585 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
70991313 TTGAATGCTG
* * * * * *
70991323 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
70991363 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
70991403 TCCGGGTTAAGTCTCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
70991443 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
70991483 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70991523 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
70991562 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
70991586 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:70991605 original size:79 final size:80
Alignment explanation
Indices: 70991362--70991620 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
70991352 AAGTGAATAT
* * * * * * *
70991362 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCTCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
70991426 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
70991442 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
70991507 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
70991522 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
70991586 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
* *
70991601 ATCC-GGTTAAATCACGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
70991621 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 13 0.08
79 48 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:71002637 original size:40 final size:40
Alignment explanation
Indices: 71002571--71002676 Score: 151
Period size: 40 Copynumber: 2.7 Consensus size: 40
71002561 ACCAGCTCGT
* * *
71002571 AGCCTGCGGGTCTCT-AGCCCGGATAACATTCCAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAACACGA
* *
71002610 AGCCTGCTGGTTTTTAAGCCCGGATAACATTCCAACACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAACACGA
*
71002650 AGCCTGCAGGTCTTTAAGCCTGGATAA
1 AGCCTGCAGGTCTTTAAGCCCGGATAA
71002677 AACCTCAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
39 12 0.20
40 47 0.80
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
AGCCTGCAGGTCTTTAAGCCCGGATAACATTCCAACACGA
Found at i:71008607 original size:22 final size:23
Alignment explanation
Indices: 71008568--71008610 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
71008558 GAGATCCTAC
*
71008568 CCATCCATCCTCTACACTCCACT
1 CCATCCAACCTCTACACTCCACT
71008591 CCATCCAACC-CTACACTCCA
1 CCATCCAACCTCTACACTCCA
71008611 TGTAGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.26, C:0.53, G:0.00, T:0.21
Consensus pattern (23 bp):
CCATCCAACCTCTACACTCCACT
Found at i:71010998 original size:49 final size:47
Alignment explanation
Indices: 71010789--71011100 Score: 180
Period size: 49 Copynumber: 6.6 Consensus size: 47
71010779 TATGTGTGCT
* * * * *
71010789 AGTGTAAGACATGTCTGGGACAT-GCATCGACATTGA-GATGAGACCC
1 AGTGTAAGACCTGTCTGAGACATGGCATCGAC-CTGATAATGAGAGCC
* * * *
71010835 AGTGTAAGACATGTCTCAGACAT-GCATCGGCCTCAAGAT-ATGCA-AGCT
1 AGTGTAAGACCTGTCTGAGACATGGCATCGACCT---GATAATG-AGAGCC
* * * * *
71010883 AGTGTAAGACCTGT-TTAGGACATGGCATCGGCTTGAT-AT--GTGTC
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGACCTGATAATGAGAGCC
71010927 AGTGTAAGACCTGTCT-AGGACATGGCATCGACACTGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGA-GACATGGCATCGAC-CTGATA-ATGAGAGCC
** * * * **
71010976 AGTGTAAGACCCATCTGAGACATGGCATTGGCCTTGATATATGAAAGTT
1 AGTGTAAGACCTGTCTGAGACATGGCATCGACC-TGATA-ATGAGAGCC
* * * *
71011025 AGTATAAGACCTGTCTGGGACATGGCATCGACTTAGAT-ATGTGAGCC
1 AGTGTAAGACCTGTCTGAGACATGGCATCGACCT-GATAATGAGAGCC
*
71011072 AGTGTAAGACCATGTTTG-GAACATGGCAT
1 AGTGTAAGACC-TGTCTGAG-ACATGGCAT
71011101 TGGCATCGTA
Statistics
Matches: 210, Mismatches: 37, Indels: 36
0.74 0.13 0.13
Matches are distributed among these distances:
44 30 0.14
45 6 0.03
46 33 0.16
47 20 0.10
48 41 0.20
49 79 0.38
50 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGAGACATGGCATCGACCTGATAATGAGAGCC
Found at i:71011048 original size:142 final size:139
Alignment explanation
Indices: 71010776--71011100 Score: 366
Period size: 142 Copynumber: 2.3 Consensus size: 139
71010766 TAACATTTGG
* * *
71010776 TGATATGTGTGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACATTGAGATGAGACCCAGTGT
1 TGATATGTGT-C-AGTGTAAGACCTGTCTAGGACATGGCATCGACACTGAGATGAGACCCAGTGT
** * * *
71010840 AAGACATGTCTCAGACATGCATCGGCCTCAAGATATGCAAGCTAGTGTAAGACCTGTTTAGGACA
64 AAGACACATCTCAGACATGCATCGGCCTCAAGATATGAAAGCTAGTATAAGACCTGTCTAGGACA
*
71010905 TGGCATCGGCT
129 TGGCATCGACT
*
71010916 TGATATGTGTCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTGATAGATGAGAGCCAGTGT
1 TGATATGTGTCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTG--AGATGAGACCCAGTGT
* * * ** * * *
71010981 AAGACCCATCTGAGACATGGCATTGGCCTTGATATATGAAAGTTAGTATAAGACCTGTCTGGGAC
64 AAGACACATCTCAGACAT-GCATCGGCCTCAAGATATGAAAGCTAGTATAAGACCTGTCTAGGAC
71011046 ATGGCATCGACT
128 ATGGCATCGACT
* *
71011058 TAGATATGTGAGCCAGTGTAAGACCATGT-TTGGAACATGGCAT
1 T-GATATGT--GTCAGTGTAAGACC-TGTCTAGG-ACATGGCAT
71011101 TGGCATCGTA
Statistics
Matches: 156, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
138 21 0.13
139 12 0.08
140 10 0.06
141 29 0.19
142 49 0.31
143 7 0.04
145 16 0.10
146 12 0.08
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (139 bp):
TGATATGTGTCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTGAGATGAGACCCAGTGTAA
GACACATCTCAGACATGCATCGGCCTCAAGATATGAAAGCTAGTATAAGACCTGTCTAGGACATG
GCATCGACT
Found at i:71013526 original size:38 final size:38
Alignment explanation
Indices: 71013482--71013621 Score: 190
Period size: 38 Copynumber: 3.7 Consensus size: 38
71013472 GCTTAAAGGT
*
71013482 CTGCAGGCTTCATGCTAGTATTATATCTGGGTTAAATC
1 CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
* * *
71013520 CCGCAGGCTTCGTGCTGGTATTATATCCGGGTTAAATC
1 CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
* **
71013558 CTGCAGGTTTTGTGCTAGTATTATATCCGGGTTAAATC
1 CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
* * *
71013596 CTGCATGCTTAATGCTGGTATTATAT
1 CTGCAGGCTTCATGCTAGTATTATAT
71013622 TCGAGCTTAA
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 89 1.00
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (38 bp):
CTGCAGGCTTCATGCTAGTATTATATCCGGGTTAAATC
Found at i:71013578 original size:76 final size:78
Alignment explanation
Indices: 71013494--71013651 Score: 230
Period size: 76 Copynumber: 2.1 Consensus size: 78
71013484 GCAGGCTTCA
* ** *
71013494 TGCTAGTATTATATCTGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCG-GGTTAAA-T
1 TGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATTATATCCGAGCTTAAAGT
*
71013557 CCTGCAGGTTTTG
66 CCCGCAGGTTTTG
* * *
71013570 TGCTAGTATTATATCCGGGTTAAATCCTGCATGCTTAATGCTGGTATTATATTCGAGCTTAAAGT
1 TGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATTATATCCGAGCTTAAAGT
71013635 CCCGCAGGTTTTG
66 CCCGCAGGTTTTG
71013648 TGCT
1 TGCT
71013652 GGTGACTGGA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
76 49 0.68
77 6 0.08
78 17 0.24
ACGTcount: A:0.21, C:0.18, G:0.23, T:0.37
Consensus pattern (78 bp):
TGCTAGTATTATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTATTATATCCGAGCTTAAAGT
CCCGCAGGTTTTG
Found at i:71020022 original size:38 final size:38
Alignment explanation
Indices: 71019960--71020137 Score: 216
Period size: 38 Copynumber: 4.6 Consensus size: 38
71019950 ATTTGATGTG
71019960 TATCCGGGCTTAAAGGT-CCGCAGGCTTCATGCTGGTATTA
1 TATCCGGG-TTAAA--TCCCGCAGGCTTCATGCTGGTATTA
*
71020000 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
* * ** *
71020038 TATCCAGGTTAAATCCTGCAGGCTTTGTGCTAGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
71020076 TATCCGGGTTAAATCCCGCAGGCTT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGTATTA
* *
71020114 TATTCGAGCTTAAAGTCCCGCAGG
1 TATCCG-GGTTAAA-TCCCGCAGG
71020138 TTTTGTGTTG
Statistics
Matches: 123, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
37 1 0.01
38 94 0.76
39 11 0.09
40 17 0.14
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
Found at i:71025247 original size:21 final size:21
Alignment explanation
Indices: 71025223--71025278 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
71025213 AAAATAGGGC
71025223 ACACGCCCGTGTGGAAGGGTA
1 ACACGCCCGTGTGGAAGGGTA
*
71025244 ACACGCCCGTGTAGAAGGGTA
1 ACACGCCCGTGTGGAAGGGTA
* *
71025265 ACACGTCCGCGTGG
1 ACACGCCCGTGTGG
71025279 TCTTTATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.23, C:0.27, G:0.36, T:0.14
Consensus pattern (21 bp):
ACACGCCCGTGTGGAAGGGTA
Found at i:71026556 original size:49 final size:50
Alignment explanation
Indices: 71026456--71026565 Score: 152
Period size: 49 Copynumber: 2.2 Consensus size: 50
71026446 AGATGCTGAC
* * *
71026456 GCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGTTGAT
1 GCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATAGCGAGGTCGAT
* *
71026506 GCCATGTCCCAGACA-GGTCTTACAATGGCTCTCATCTATC-AGTGTCGAT
1 GCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATAGCGAG-GTCGAT
71026555 GCCATGTCCCA
1 GCCATGTCCCA
71026566 AAAAAGTGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
48 2 0.04
49 37 0.69
50 15 0.28
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACAATGGCTCTCATATAGCGAGGTCGAT
Found at i:71026709 original size:46 final size:46
Alignment explanation
Indices: 71026601--71026767 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
71026591 AAGCTGACGA
* * * * *
71026601 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCGCGA-GGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCT-CAT-GCTATGGCCGATG
*
71026649 CATGTCCCAGACATGTCTTACACTAGCTCTCGT-CTAAAT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGCT--ATGGCCGATG
* * * * * **
71026695 CATGTCCCAAACATGTCTCATACTGGCTCTCATGCTCTGGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCCGATG
71026741 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
71026768 GCACATATCA
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 64 0.67
47 4 0.04
48 26 0.27
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATGCTATGGCCGATG
Found at i:71034081 original size:46 final size:47
Alignment explanation
Indices: 71033975--71034101 Score: 220
Period size: 46 Copynumber: 2.7 Consensus size: 47
71033965 GTGCTAATAA
71033975 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
* *
71034022 TACCTTAATTTGGCTACAGGCCATGATATAGGTATTTT-AGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
*
71034068 TACCTTGATTTGGCTACGGGCCATGGTATAGGTA
1 TACCTTGATTTGGCTACGGGCCATGATATAGGTA
71034102 ATCCGGGATA
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
46 39 0.52
47 36 0.48
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGATATAGGTATTTTGAGAGGAGT
Found at i:71039775 original size:46 final size:46
Alignment explanation
Indices: 71039725--71039900 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
71039715 TGATTGAGCA
71039725 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * **
71039771 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA--ATG
*
71039816 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71039864 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71039901 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 5 0.05
45 7 0.06
46 61 0.55
47 29 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71039835 original size:93 final size:93
Alignment explanation
Indices: 71039722--71039893 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
71039712 GGATGATTGA
*
71039722 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-GAACTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAACTCGTTGAG
71039786 TTGAGTCCGAGTTCGTGAGATGTAACTAT
65 TTGAGTCCGAGTTCGTGAGATGTAACTAT
*
71039815 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
71039880 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
71039894 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAT
Found at i:71047338 original size:46 final size:46
Alignment explanation
Indices: 71047288--71047463 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
71047278 TGATTGAGCA
71047288 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
71047334 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
71047379 CATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
71047427 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71047464 GCGGGTTACG
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71047444 original size:93 final size:93
Alignment explanation
Indices: 71047285--71047456 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
71047275 GGATGATTGA
* *
71047285 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
71047350 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
71047378 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
71047442 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
71047457 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:71051315 original size:27 final size:26
Alignment explanation
Indices: 71051284--71051460 Score: 176
Period size: 27 Copynumber: 6.5 Consensus size: 26
71051274 TAAATTGTAC
71051284 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
71051311 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
71051337 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
71051365 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
71051393 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
71051420 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
71051447 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
71051461 AGGCTCAATA
Statistics
Matches: 127, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 101 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:71051400 original size:82 final size:81
Alignment explanation
Indices: 71051285--71051440 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
71051275 AAATTGTACA
* * *
71051285 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71051349 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71051366 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71051431 TGCGAGTTGA
65 TGCGAATTGA
71051441 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71051452 original size:82 final size:81
Alignment explanation
Indices: 71051281--71051460 Score: 218
Period size: 82 Copynumber: 2.2 Consensus size: 81
71051271 GATTAAATTG
* * *
71051281 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71051346 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71051362 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71051426 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71051444 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
71051461 AGGCTCAATA
Statistics
Matches: 82, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 62 0.76
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71058829 original size:27 final size:26
Alignment explanation
Indices: 71058798--71058975 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
71058788 TAAATTGTAC
71058798 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
71058825 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
71058851 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
71058879 GGCACTAAGTGTGCGAGTCTGACTATGT
1 AGCACTAAGTGTGCGA-T-TGACTATGT
* *
71058907 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
71058934 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
71058961 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
71058976 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 102 0.80
28 25 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:71058914 original size:82 final size:81
Alignment explanation
Indices: 71058799--71058954 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
71058789 AAATTGTACA
* * *
71058799 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
71058863 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
71058880 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
71058945 TGCGAGTTGA
65 TGCGAATTGA
71058955 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 48 0.73
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:71058966 original size:82 final size:81
Alignment explanation
Indices: 71058795--71058975 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
71058785 GATTAAATTG
* * *
71058795 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
71058860 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
71058876 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
71058940 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
71058958 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
71058976 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 20 0.24
82 63 0.76
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:71058986 original size:27 final size:27
Alignment explanation
Indices: 71058880--71058986 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
71058870 TGACCATGCG
* * *
71058880 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
71058908 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
71058935 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
71058962 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
71058987 CATTCGTGAA
Statistics
Matches: 67, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
27 52 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:71063696 original size:40 final size:40
Alignment explanation
Indices: 71063622--71063843 Score: 367
Period size: 40 Copynumber: 5.6 Consensus size: 40
71063612 AACCCAAGTA
* *
71063622 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
71063661 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
71063701 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
71063741 CCTTCGGGGCTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
71063781 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
71063821 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
71063844 CATTCGAATA
Statistics
Matches: 171, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 12 0.07
40 156 0.91
41 3 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:71073796 original size:27 final size:27
Alignment explanation
Indices: 71073761--71073817 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
71073751 GGGAATAATC
* *
71073761 GTCATTTTAACATACAGGGGTATTACG
1 GTCACTTTAACATACAGGGGCATTACG
* *
71073788 GTCACTTTACCCTACAGGGGCATTACG
1 GTCACTTTAACATACAGGGGCATTACG
71073815 GTC
1 GTC
71073818 TTTTTACCTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (27 bp):
GTCACTTTAACATACAGGGGCATTACG
Found at i:71073907 original size:27 final size:27
Alignment explanation
Indices: 71073877--71074196 Score: 186
Period size: 27 Copynumber: 11.9 Consensus size: 27
71073867 GGTAAATCTA
* *
71073877 CAAACCAACGGTATTTCAGTAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
71073904 CAAACCAATGGTATTTCTA-TAATTTTAG
1 CAAATCAAGGGTATTTC-AGTAATTTT-G
* * *
71073932 -AAAGTCAAGGATATTTCTGTAATTATG
1 CAAA-TCAAGGGTATTTCAGTAATTTTG
* * * * *
71073959 TAAATTAGGGGTAATTCTA-TAATTTTC
1 CAAATCAAGGGTATTTC-AGTAATTTTG
* *
71073986 CAAATTAAGGGTATTTCAGTAATTTTC
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** *
71074013 CAAATCAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
** *
71074040 CAAATTGAGGGTATTTCAGTAATTTTA
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
71074067 CAAGTCAA-GGTATTTC-GATAATTTTA
1 CAAATCAAGGGTATTTCAG-TAATTTTG
* ** ** * *
71074093 TAGGTTGAGGGTATTTCAATAATTTCG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* ** *
71074120 CAAA-CTAGGGGTATTTTGGTAATTTTA
1 CAAATC-AAGGGTATTTCAGTAATTTTG
* **
71074147 CAAATCAGGGGTATTTTGGTAATTTTG
1 CAAATCAAGGGTATTTCAGTAATTTTG
* *
71074174 TAAACCAAGGGTA-TTCAGTAATT
1 CAAATCAAGGGTATTTCAGTAATT
71074197 CTACCCTACA
Statistics
Matches: 228, Mismatches: 53, Indels: 25
0.75 0.17 0.08
Matches are distributed among these distances:
25 1 0.00
26 29 0.13
27 176 0.77
28 22 0.10
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCAGTAATTTTG
Found at i:71074063 original size:81 final size:81
Alignment explanation
Indices: 71073886--71074172 Score: 194
Period size: 80 Copynumber: 3.5 Consensus size: 81
71073876 ACAAACCAAC
* * *
71073886 GGTATTTCAGTAATTTTGCAAACCAATGGTATTTCTA-TAATTTTAGAAAGTCAAGGATATTTCT
1 GGTATTTCAGTAATTTTACAAATCAA-GGTATTTC-AGTAATTTTACAAAGTCAAGGATATTTCT
**
71073950 GTAATTATGTAAATTAGG
64 GTAATTATACAAATTAGG
* * * * * *
71073968 GGTAATTCTA-TAATTTTCCAAATTAAGGGTATTTCAGTAATTTTCCAAA-TCAGGGGTATTT-T
1 GGTATTTC-AGTAATTTTACAAATCAA-GGTATTTCAGTAATTTTACAAAGTCAAGGATATTTCT
*
71074030 GGTAATTTTACAAATT-GAG
64 -GTAATTATACAAATTAG-G
* * * ** * **
71074049 GGTATTTCAGTAATTTTACAAGTCAAGGTATTTC-GATAATTTTA-TAGGTTGAGGGTATTTCAA
1 GGTATTTCAGTAATTTTACAAATCAAGGTATTTCAG-TAATTTTACAAAGTCAAGGATATTTCTG
* *
71074112 TAATT-TCGCAAACTAGG
65 TAATTAT-ACAAATTAGG
** * **
71074129 GGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTT
1 GGTATTTCAGTAATTTTACAAATCA-AGGTATTTCAGTAATTTT
71074173 GTAAACCAAG
Statistics
Matches: 162, Mismatches: 31, Indels: 25
0.74 0.14 0.11
Matches are distributed among these distances:
79 3 0.02
80 60 0.37
81 59 0.36
82 39 0.24
83 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
GGTATTTCAGTAATTTTACAAATCAAGGTATTTCAGTAATTTTACAAAGTCAAGGATATTTCTGT
AATTATACAAATTAGG
Found at i:71074183 original size:107 final size:108
Alignment explanation
Indices: 71073993--71074188 Score: 265
Period size: 107 Copynumber: 1.8 Consensus size: 108
71073983 TTCCAAATTA
* *
71073993 AGGGTATTTCAGTAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCA
1 AGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCA
**
71074058 GTAATTTTACAAGTCAA-GGTATTTCGATAATTTTATAGGTTG
66 GTAATTTTACAAACCAAGGGTATTTCGATAATTTTATAGGTTG
71074100 AGGGTATTTCAATAA-TTTCGCAAA-CTAGGGGTATTTTGGTAATTTTACAAATCAG-GGGTATT
1 AGGGTATTTCAATAATTTTC-CAAATC-AGGGGTATTTTGGTAATTTTACAAAT-AGAGGGTATT
** **
71074162 TTGGTAATTTTGTAAACCAAGGGTATT
63 TCAGTAATTTTACAAACCAAGGGTATT
71074189 CAGTAATTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
106 5 0.06
107 65 0.84
108 7 0.09
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (108 bp):
AGGGTATTTCAATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCA
GTAATTTTACAAACCAAGGGTATTTCGATAATTTTATAGGTTG
Found at i:71074186 original size:54 final size:54
Alignment explanation
Indices: 71073855--71074188 Score: 242
Period size: 54 Copynumber: 6.2 Consensus size: 54
71073845 ATTTCACCTA
* * * * * *
71073855 CAAGGGTGTTTTGGTAAATCTACAAACCAACGGTATTTCAGTAATTTTGCAAAC
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * * * * * *
71073909 CAATGGTATTTCT-ATAATTTTAGAAAGTCAAGGATATTTCTGTAATTATGTAAAT
1 CAAGGGTATTT-TGATAATTTTACAAA-TCAAGGGTATTTCAGTAATTTTGCAAAC
* * * * * * *
71073964 TAGGGGTAATTCT-ATAATTTTCCAAATTAAGGGTATTTCAGTAATTTTCCAAAT
1 CAAGGGT-ATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * ** * **
71074018 CAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAGT
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * ** ** * *
71074072 CAA-GGTATTTCGATAATTTTATAGGTTGAGGGTATTTCAATAATTTCGCAAAC
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
* * * * ** *
71074125 TAGGGGTATTTTGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
71074179 CAAGGGTATT
1 CAAGGGTATT
71074189 CAGTAATTCT
Statistics
Matches: 215, Mismatches: 60, Indels: 10
0.75 0.21 0.04
Matches are distributed among these distances:
53 45 0.21
54 129 0.60
55 38 0.18
56 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (54 bp):
CAAGGGTATTTTGATAATTTTACAAATCAAGGGTATTTCAGTAATTTTGCAAAC
Found at i:71074261 original size:27 final size:26
Alignment explanation
Indices: 71074186--71074261 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 26
71074176 AACCAAGGGT
*
71074186 ATTCAGTAATTCTACCCTACAAAGGA
1 ATTCAGTAATTCTACCCTACAGAGGA
*
71074212 ATTTCAGTAATTCTACCCTACAGGGGCA
1 A-TTCAGTAATTCTACCCTACAGAGG-A
* *
71074240 ATTCAGTAATACTAGCCTACAG
1 ATTCAGTAATTCTACCCTACAG
71074262 TATGAGATTC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 1 0.02
27 41 0.93
28 2 0.05
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
ATTCAGTAATTCTACCCTACAGAGGA
Found at i:71085719 original size:17 final size:17
Alignment explanation
Indices: 71085697--71085730 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
71085687 GGTAAGTATA
*
71085697 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
71085714 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
71085731 CATGTTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:71091001 original size:20 final size:20
Alignment explanation
Indices: 71090963--71091001 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
71090953 AAATAGGGTT
*
71090963 ACACGCACATCTGGCTTGGA
1 ACACGCACATCTGGATTGGA
* *
71090983 ACACGCCCATGTGGATTGG
1 ACACGCACATCTGGATTGG
71091002 CCGTGTGGTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (20 bp):
ACACGCACATCTGGATTGGA
Found at i:71092932 original size:30 final size:29
Alignment explanation
Indices: 71092896--71092956 Score: 113
Period size: 30 Copynumber: 2.1 Consensus size: 29
71092886 AAACGAAAGT
71092896 TTTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTTGGCACTAAGTGTGCGATTT-AACTAGC
71092926 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCGATTTAACTAGC
71092955 TT
1 TT
71092957 CGGTTACTTG
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 9 0.29
30 22 0.71
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCGATTTAACTAGC
Found at i:71098620 original size:9 final size:9
Alignment explanation
Indices: 71098606--71098631 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
71098596 ATTTATTTAA
71098606 TAAATTATT
1 TAAATTATT
71098615 TAAATTATT
1 TAAATTATT
71098624 TAAATTAT
1 TAAATTAT
71098632 AAAATTCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TAAATTATT
Found at i:71100584 original size:19 final size:19
Alignment explanation
Indices: 71100562--71100599 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
71100552 TCATTGTCAC
*
71100562 CCACTATAATCAAATTTGT
1 CCACCATAATCAAATTTGT
*
71100581 CCACCGTAATCAAATTTGT
1 CCACCATAATCAAATTTGT
71100600 TACTAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.34, C:0.24, G:0.08, T:0.34
Consensus pattern (19 bp):
CCACCATAATCAAATTTGT
Found at i:71101418 original size:3 final size:3
Alignment explanation
Indices: 71101410--71101455 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
71101400 AAACTCTTTT
71101410 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
71101456 TTCATTAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:71101671 original size:40 final size:39
Alignment explanation
Indices: 71101598--71101960 Score: 188
Period size: 40 Copynumber: 9.3 Consensus size: 39
71101588 CGTTTAGATA
* *
71101598 AAAAATGCTGCTATAGATCGAGCATTAGCGTGCTTCTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGTGCTTTTTG
* * *
71101637 AAAAACGCCGCTATAGATCAAGTATTAGCGGTGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGC-GTGCTTTTTG
* * *
71101677 AAAAATGCCGTTATAGATTGAGCATTAGCAGTGCTTTTTA
1 AAAAATGCCGCTATAGATCGAGCATTAGC-GTGCTTTTTG
* * * * * *
71101717 AAAAATGCCTCTATAGGTTGACCATTAGTGTCGCTTTTCG
1 AAAAATGCCGCTATAGATCGAGCATTAGCGT-GCTTTTTG
* * * ** * * ** *
71101757 AAAAATGCCGCAAAAAAAATTAAGCA-CAACGCCCATTTT-
1 AAAAATGCCGC--TATAGATCGAGCATTAGCGTGCTTTTTG
*** * *
71101796 -ATGTTG--GTCTTTAG-T-G-GCATTAGC-TGCGCTTTTG
1 AAAAATGCCG-CTATAGATCGAGCATTAGCGTGC-TTTTTG
* ** *
71101830 AAAAACGCCATTATAGATCGAGCATTAGCGATGCTTTCTG
1 AAAAATGCCGCTATAGATCGAGCATTAGCG-TGCTTTTTG
** *
71101870 AAAAACACCGCTATAGATCGAGCATTAGCG-GCACTTTTTT
1 AAAAATGCCGCTATAGATCGAGCATTAGCGTG--CTTTTTG
* * * *
71101910 AAAAATGCCGCTATAGGTCAACCATTAGCAGCGCTTTTTG
1 AAAAATGCCGCTATAGATCGAGCATTAGC-GTGCTTTTTG
*
71101950 AAAAACGCCGC
1 AAAAATGCCGC
71101961 AAAAAAATTA
Statistics
Matches: 237, Mismatches: 67, Indels: 39
0.69 0.20 0.11
Matches are distributed among these distances:
32 4 0.02
33 6 0.03
34 1 0.00
35 3 0.01
36 5 0.02
37 2 0.01
38 5 0.02
39 35 0.15
40 162 0.68
41 6 0.03
42 8 0.03
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (39 bp):
AAAAATGCCGCTATAGATCGAGCATTAGCGTGCTTTTTG
Found at i:71101962 original size:193 final size:192
Alignment explanation
Indices: 71101619--71101981 Score: 487
Period size: 193 Copynumber: 1.9 Consensus size: 192
71101609 TATAGATCGA
* * * * * **
71101619 GCATTAGCGTGCTTCTTGAAAAACGCCGCTATAGATCAAGTATTAGCGGTGCTTTTTGAAAAATG
1 GCATTAGCGCGCTTCTTGAAAAACGCCACTATAGATCAAGCATTAGCGATGCTTTCTGAAAAACA
* * ** * ** *
71101684 CCGTTATAGATTGAGCATTAGCAGTGCTTTTTAAAAAATGCCTCTATAGGTTGACCATTAGTGTC
66 CCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAATGCCGCTATAGGTCAACCATTAGAGTC
* *
71101749 GCTTTTCGAAAAATGCCGCAAAAAAAATTAAGCACAACGCCCATTTTATGTTGGTCTTTAGTG
131 GCTTTTCGAAAAACGCCGC-AAAAAAATTAAACACAACGCCCATTTTATGTTGGTCTTTAGTG
* *
71101812 GCATTAGCTGCGCTT-TTGAAAAACGCCATTATAGATCGAGCATTAGCGATGCTTTCTGAAAAAC
1 GCATTAGC-GCGCTTCTTGAAAAACGCCACTATAGATCAAGCATTAGCGATGCTTTCTGAAAAAC
* *
71101876 ACCGCTATAGATCGAGCATTAGCGGCACTTTTTTAAAAATGCCGCTATAGGTCAACCATTAGCAG
65 ACCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAATGCCGCTATAGGTCAACCATTAG-AG
*
71101941 -CGCTTTTTGAAAAACGCCGCAAAAAAATTAAACACAACGCC
129 TCGCTTTTCGAAAAACGCCGCAAAAAAATTAAACACAACGCC
71101982 GCTATTTGCT
Statistics
Matches: 146, Mismatches: 22, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
192 20 0.14
193 120 0.82
194 6 0.04
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (192 bp):
GCATTAGCGCGCTTCTTGAAAAACGCCACTATAGATCAAGCATTAGCGATGCTTTCTGAAAAACA
CCGCTATAGATCGAGCATTAGCAGCACTTTTTAAAAAATGCCGCTATAGGTCAACCATTAGAGTC
GCTTTTCGAAAAACGCCGCAAAAAAATTAAACACAACGCCCATTTTATGTTGGTCTTTAGTG
Found at i:71102537 original size:14 final size:14
Alignment explanation
Indices: 71102520--71102580 Score: 50
Period size: 14 Copynumber: 4.3 Consensus size: 14
71102510 ATGTTTATTA
71102520 TTTTGGGTTTATGG
1 TTTTGGGTTTATGG
* **
71102534 TTTTGTGTTTTAAAG
1 TTTTG-GGTTTATGG
* *
71102549 TTTAGGGTTTATGA
1 TTTTGGGTTTATGG
* *
71102563 TTTGGGGTTTAGGG
1 TTTTGGGTTTATGG
71102577 TTTT
1 TTTT
71102581 ATAGTTAGGG
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
14 24 0.71
15 10 0.29
ACGTcount: A:0.13, C:0.00, G:0.31, T:0.56
Consensus pattern (14 bp):
TTTTGGGTTTATGG
Found at i:71102591 original size:21 final size:21
Alignment explanation
Indices: 71102567--71102622 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
71102557 TTATGATTTG
71102567 GGGTTT-AGGGTTTTATAGTTA
1 GGGTTTAAGGGTTTTATA-TTA
*
71102588 GGGTTTTAAGGGTTTGAGTATTA
1 GGG-TTTAAGGGTTTTA-TATTA
71102611 GGGTTTAAGGGT
1 GGGTTTAAGGGT
71102623 AATTGATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
21 3 0.10
22 12 0.39
23 14 0.45
24 2 0.06
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.43
Consensus pattern (21 bp):
GGGTTTAAGGGTTTTATATTA
Found at i:71102595 original size:22 final size:22
Alignment explanation
Indices: 71102549--71102622 Score: 64
Period size: 22 Copynumber: 3.4 Consensus size: 22
71102539 TGTTTTAAAG
* *
71102549 TTTAGGG-TTTAT-GATTTGGGG
1 TTTAGGGTTTTATAG-TTAGGGT
71102570 TTTAGGGTTTTATAGTTAGGGT
1 TTTAGGGTTTTATAGTTAGGGT
*
71102592 TTTAAGGGTTTGAGTA-TTAGGGT
1 TTT-AGGGTTTTA-TAGTTAGGGT
*
71102615 TTAAGGGT
1 TTTAGGGT
71102623 AATTGATTTT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
21 7 0.16
22 18 0.40
23 18 0.40
24 2 0.04
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (22 bp):
TTTAGGGTTTTATAGTTAGGGT
Found at i:71103034 original size:17 final size:17
Alignment explanation
Indices: 71103012--71103045 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
71103002 ATCACATGTT
71103012 GTAAACATCAAAAATAA
1 GTAAACATCAAAAATAA
71103029 GTAAACATCAAAAATAA
1 GTAAACATCAAAAATAA
71103046 AATTAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.12, G:0.06, T:0.18
Consensus pattern (17 bp):
GTAAACATCAAAAATAA
Found at i:71107770 original size:49 final size:49
Alignment explanation
Indices: 71107713--71107806 Score: 188
Period size: 49 Copynumber: 1.9 Consensus size: 49
71107703 TGTGTTAAAT
71107713 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTACAAA
1 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTACAAA
71107762 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTA
1 AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTA
71107807 AGGTTGTATG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (49 bp):
AAATGACACAAGGAAGCTTGTAGTCTAGTGGTTGTGGCGTCATTACAAA
Found at i:71108574 original size:27 final size:27
Alignment explanation
Indices: 71108528--71108603 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
71108518 ATTATTGAAA
* * *
71108528 TACCCTCGACTTGTAAAATTACCAAAG
1 TACCCTCGATTTATAGAATTACCAAAG
* ***
71108555 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCAAAG
71108582 TACCCTCGATTTATAGAATTAC
1 TACCCTCGATTTATAGAATTAC
71108604 TGTTTTACCC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCAAAG
Found at i:71108602 original size:54 final size:54
Alignment explanation
Indices: 71108528--71108684 Score: 161
Period size: 54 Copynumber: 2.9 Consensus size: 54
71108518 ATTATTGAAA
* * * * * * *
71108528 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTC
* **** * *
71108582 TACCCTCGATTTATAGAATTACTGTTTTACCCTTGATTTACAAAATTACTGTTC
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTC
* * *
71108636 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTAC
71108685 CAAAATACCC
Statistics
Matches: 83, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTCGATTTACAAAATTACTATTC
Found at i:71108604 original size:27 final size:27
Alignment explanation
Indices: 71108555--71108684 Score: 143
Period size: 27 Copynumber: 4.8 Consensus size: 27
71108545 ATTACCAAAG
* *
71108555 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
71108582 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
71108609 TACCCTTGATTTACAAAATTACTGTTC
1 TACCCTCGATTTACAAAATTACTATTT
***
71108636 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTATTT
* *
71108663 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
71108685 CAAAATACCC
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 91 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:71108689 original size:27 final size:27
Alignment explanation
Indices: 71108609--71108800 Score: 147
Period size: 27 Copynumber: 7.1 Consensus size: 27
71108599 ATTACTGTTT
* *****
71108609 TACCCTTGATTTACAAAATTACTGTTC
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
71108636 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
71108663 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
71108690 TACCC-TCGATCAGCAAAATTACCAAAA
1 TACCCTTGGTTTA-CAAAATTACCAAAA
* * * *
71108717 TACCCTAGCTTGT--AAAATTGCTAAAA
1 TACCCTTGGTT-TACAAAATTACCAAAA
* *
71108743 TACCCCTGGTTTATAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
71108770 TACCCATAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
71108797 TACC
1 TACC
71108801 ACTAGTTTGT
Statistics
Matches: 134, Mismatches: 26, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 23 0.17
27 109 0.81
28 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:71108694 original size:54 final size:54
Alignment explanation
Indices: 71108609--71108800 Score: 167
Period size: 54 Copynumber: 3.6 Consensus size: 54
71108599 ATTACTGTTT
* ***** *
71108609 TACCCTTGATTTACAAAATTACTGTTCTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
*
71108663 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TCAGCAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTA-CAAAATTACCAAAA
* * * * * *
71108717 TACCCTAGCTTGT--AAAATTGCTAAAATACCC-CTGGTTTATAAAATTACCAAAA
1 TACCCTTGGTT-TACAAAATTACCAAAATACCCTC-GATTTACAAAATTACCAAAA
* * **
71108770 TACCCATAGTTTGTAAAATTACCAAAATACC
1 TACCCTTGGTTTACAAAATTACCAAAATACC
71108801 ACTAGTTTGT
Statistics
Matches: 111, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
52 2 0.02
53 39 0.35
54 69 0.62
55 1 0.01
ACGTcount: A:0.40, C:0.23, G:0.07, T:0.30
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTTACAAAATTACCAAAA
Found at i:71108761 original size:80 final size:80
Alignment explanation
Indices: 71108650--71108851 Score: 237
Period size: 80 Copynumber: 2.5 Consensus size: 80
71108640 CTCGATTTAC
* *
71108650 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-TCGATCAGCAAAATTACCA
1 AAAATT-CTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCATAG-TCAGCAAAATTACCA
71108714 AAATACC-CTAGCTTGT
64 AAATACCACTAGCTTGT
* ** *
71108730 AAAATTGCTAAAATACCCCTGGTTTATAAAATTACCAAAATACCCATAGTTTGTAAAATTACCAA
1 AAAATT-CTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCATAGTCAGCAAAATTACCAA
*
71108795 AATACCACTAGTTTGT
65 AATACCACTAGCTTGT
* * * ** *
71108811 GAAATTATCGAAATACCCTTAATTTGTAAAATTACCAAAAT
1 AAAATTCT-AAAATACCCTTGGTTTATAAAATTACCAAAAT
71108852 TACAGAAATA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
80 62 0.60
81 42 0.40
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (80 bp):
AAAATTCTAAAATACCCTTGGTTTATAAAATTACCAAAATACCCATAGTCAGCAAAATTACCAAA
ATACCACTAGCTTGT
Found at i:71108806 original size:27 final size:26
Alignment explanation
Indices: 71108650--71108851 Score: 197
Period size: 27 Copynumber: 7.5 Consensus size: 26
71108640 CTCGATTTAC
* * **
71108650 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCC-TAGTTTGT
* ** *
71108677 AAAATTACCAAAATACCCTCGATCAGC
1 AAAATTACCAAAATACCCTAG-TTTGT
*
71108704 AAAATTACCAAAATACCCTAGCTTGT
1 AAAATTACCAAAATACCCTAGTTTGT
* * * *
71108730 AAAATTGCTAAAATACCCCTGGTTTAT
1 AAAATTACCAAAATA-CCCTAGTTTGT
71108757 AAAATTACCAAAATACCCATAGTTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
71108784 AAAATTACCAAAATACCACTAGTTTGT
1 AAAATTACCAAAATACC-CTAGTTTGT
* * * *
71108811 GAAATTATCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCC-TAGTTTGT
71108838 AAAATTACCAAAAT
1 AAAATTACCAAAAT
71108852 TACAGAAATA
Statistics
Matches: 144, Mismatches: 26, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
26 20 0.14
27 123 0.85
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (26 bp):
AAAATTACCAAAATACCCTAGTTTGT
Found at i:71109023 original size:27 final size:27
Alignment explanation
Indices: 71108981--71109045 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
71108971 ACCCTTATTA
* * *
71108981 GGTAAAAAGACTGTAA-AGCCCTGGTAG
1 GGTAAAATGACCGTAATACCCCT-GTAG
* *
71109008 GGTAAAGTGACCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
71109035 GGTAAAATGAC
1 GGTAAAATGAC
71109046 GAATATGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:71109892 original size:25 final size:25
Alignment explanation
Indices: 71109854--71109947 Score: 118
Period size: 25 Copynumber: 3.8 Consensus size: 25
71109844 AGGAAGTGCT
* *
71109854 AAAAGGGCTATGCCCCAATTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
71109879 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
71109904 AAAAGGGCTTTGCCCCAGCTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
71109928 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
71109948 ATTAAAAGAG
Statistics
Matches: 59, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
24 18 0.31
25 41 0.69
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:71109939 original size:24 final size:23
Alignment explanation
Indices: 71109879--71109955 Score: 100
Period size: 25 Copynumber: 3.2 Consensus size: 23
71109869 CAATTTACTG
*
71109879 AAAAGGGTTTTGCCCCAGTTTACC
1 AAAAGGGTTTTGCCCCAG-TTATC
*
71109903 GAAAAGGGCTTTGCCCCAGCTTATC
1 -AAAAGGGTTTTGCCCCAG-TTATC
*
71109928 AAAAGGGTTTTGCCCCAGTTATT
1 AAAAGGGTTTTGCCCCAGTTATC
71109951 AAAAG
1 AAAAG
71109956 AGGCTAGGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
23 9 0.19
24 17 0.36
25 21 0.45
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
AAAAGGGTTTTGCCCCAGTTATC
Found at i:71110201 original size:31 final size:31
Alignment explanation
Indices: 71110166--71110264 Score: 152
Period size: 31 Copynumber: 3.3 Consensus size: 31
71110156 CATTTACAGT
71110166 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
71110197 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
71110228 TAAGGCTTC-GCCC-ATGATATGA-TTATG-
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
71110255 AAAGGCTTCG
1 AAAGGCTTCG
71110265 CCAGTAACCG
Statistics
Matches: 63, Mismatches: 4, Indels: 5
0.88 0.06 0.07
Matches are distributed among these distances:
27 8 0.13
28 5 0.08
29 8 0.13
30 4 0.06
31 38 0.60
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:71112711 original size:27 final size:27
Alignment explanation
Indices: 71112581--71112712 Score: 183
Period size: 27 Copynumber: 4.9 Consensus size: 27
71112571 ATTACCAAAG
*
71112581 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACTATTT
**
71112608 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTATTT
*
71112635 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
* * *
71112662 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTATTT
* *
71112689 TACCCTCGATTTACAAAATTACTA
1 TACCCTCGATTTATAGAATTACTA
71112713 AAATACCTTT
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.30, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTATTT
Found at i:71112719 original size:27 final size:27
Alignment explanation
Indices: 71112635--71112992 Score: 133
Period size: 27 Copynumber: 13.2 Consensus size: 27
71112625 ATTACCGTTT
* * * ***
71112635 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTAAAA
* * ****
71112662 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAA
71112689 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* * * *
71112716 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
71112743 TACCCTCGA-TCAGCAAAATTACAAAAA
1 TACCCTCGATTTA-CAAAATTACTAAAA
* * **
71112770 TACCCTAG-TCTGTAAAATTACTAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* ** * *
71112796 TACCC-CTGGTTTGTAAAATTTCCAAAA
1 TACCCTC-GATTTACAAAATTACTAAAA
* ** *
71112823 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTACTAAAA
***
71112850 TACCACT-GATTTGTGAAATTA-TCAAAA
1 TACC-CTCGATTTACAAAATTACT-AAAA
* ** *
71112877 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAA
* *
71112904 TACCC-CTAATCTACAAAATTAC-AGAAA
1 TACCCTC-GATTTACAAAATTACTA-AAA
*
71112931 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTCGA-TTTAC--AAAATTACTA-AAA
* * * * *
71112960 TACCATTGGTTAACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTACTAAAA
71112987 TACCCT
1 TACCCT
71112993 TGGTTTGTAG
Statistics
Matches: 265, Mismatches: 47, Indels: 38
0.76 0.13 0.11
Matches are distributed among these distances:
26 24 0.09
27 214 0.81
28 7 0.03
29 20 0.08
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTAAAA
Found at i:71112729 original size:54 final size:54
Alignment explanation
Indices: 71112581--71112775 Score: 158
Period size: 54 Copynumber: 3.6 Consensus size: 54
71112571 ATTACCAAAG
* * * *** * *
71112581 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
* * * *** *
71112635 TACCCTTGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
* * * ****
71112689 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
* *
71112743 TACCCTCGA-TCAGCAAAATTACAAAAATACCCT
1 TACCCTCGATTTA-CAAAATTACTAAAATACCCT
71112776 AGTCTGTAAA
Statistics
Matches: 118, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
53 2 0.02
54 116 0.98
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (54 bp):
TACCCTCGATTTACAAAATTACTAAAATACCCTTGATTTACAGAATTACCGTTT
Found at i:71112747 original size:81 final size:81
Alignment explanation
Indices: 71112568--71112752 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 81
71112558 TTTGACTTGT
* * * * **
71112568 AAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGT
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
** *
71112633 TTTACCCTTGATTTAT
66 AATACCCTTGATTTAC
* * *** * ** *
71112649 AGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAA
1 AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
* *
71112714 AATACCTTTGGTTTAC
66 AATACCCTTGATTTAC
71112730 AAAATTACCAAAATACCCTCGAT
1 AAAATTACCAAAATACCCTCGAT
71112753 CAGCAAAATT
Statistics
Matches: 79, Mismatches: 25, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
81 79 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCAA
AATACCCTTGATTTAC
Found at i:71112774 original size:81 final size:78
Alignment explanation
Indices: 71112689--71112991 Score: 216
Period size: 81 Copynumber: 3.7 Consensus size: 78
71112679 ATTACTGTTT
* * *
71112689 TACCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATACCCTCGATC
1 TACCCT-GATTTGCAAAATTA-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCC-CAATC
71112754 AGCAAAATTACAAAAA
63 AGCAAAATTACAAAAA
* * * ** * * *
71112770 TACCCT-AGTCTGTAAAATTACTAAAATACCCCTGGTTTGTAAAATTTCCAAAATACCCCTAGTT
1 TACCCTGA-TTTGCAAAATTA-TAAAATACCCTTGGTTTACAAAATTACCAAAATACCCC-AATC
* * *
71112834 TGTAAAATTACCAAAA
63 AGCAAAATTACAAAAA
** *** **
71112850 TACCACTGATTTGTGAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATC
1 TACC-CTGATTTGCAAAATTAT-AAAATACCCTTGGTTTACAAAATTACCAAAATACCCC-AATC
*
71112915 TA-CAAAATTACAGAAA
63 -AGCAAAATTACAAAAA
* * **
71112931 TACCCTTGACTTT-CTAAAAATTATAGAAATACCATTGGTTAACAAAATTACTGAAATACCC
1 TACCC-TGA-TTTGC--AAAATTATA-AAATACCCTTGGTTTACAAAATTACCAAAATACCC
71112992 TTGGTTTGTA
Statistics
Matches: 173, Mismatches: 38, Indels: 20
0.75 0.16 0.09
Matches are distributed among these distances:
79 2 0.01
80 62 0.36
81 71 0.41
82 5 0.03
83 33 0.19
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (78 bp):
TACCCTGATTTGCAAAATTATAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCAATCAGC
AAAATTACAAAAA
Found at i:71112850 original size:54 final size:53
Alignment explanation
Indices: 71112730--71112910 Score: 213
Period size: 54 Copynumber: 3.4 Consensus size: 53
71112720 TTTGGTTTAC
** * * * *
71112730 AAAATTACCAAAATA-CCCTCGATCAGCAAAATTACAAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTTCCAAAATACCCTAGTTTGT
* *
71112783 AAAATTACTAAAATACCCCTGGTTTGTAAAATTTCCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTTCCAAAATA-CCCTAGTTTGT
* * *
71112837 AAAATTACCAAAATACCACTGATTTGTGAAATTAT-CAAAATACCCTCAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATT-TCCAAAATACCCT-AGTTTGT
71112891 AAAATTACCAAAATACCCCT
1 AAAATTACCAAAATACCCCT
71112911 AATCTACAAA
Statistics
Matches: 110, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
53 34 0.31
54 75 0.68
55 1 0.01
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTTCCAAAATACCCTAGTTTGT
Found at i:71112923 original size:54 final size:53
Alignment explanation
Indices: 71112691--71112936 Score: 203
Period size: 54 Copynumber: 4.5 Consensus size: 53
71112681 TACTGTTTTA
* * ** **
71112691 CCCTCGATTTACAAAATTACTAAAATACCTTTGGTTTACAAAATTACCAAAATA-
1 CCCT-GATCTACAAAATTAC-AAAATACCCTCAGTTTGTAAAATTACCAAAATAC
* *
71112745 CCCTCGATC-AGCAAAATTACAAAAATACCCT-AGTCTGTAAAATTACTAAAATAC
1 CCCT-GATCTA-CAAAATTAC-AAAATACCCTCAGTTTGTAAAATTACCAAAATAC
* * ** *
71112799 CCCTGGTTTGTAAAATTTCCAAAATACCC-CTAGTTTGTAAAATTACCAAAATAC
1 CCCTGATCTACAAAA-TTACAAAATACCCTC-AGTTTGTAAAATTACCAAAATAC
* * *** *
71112853 CACTGATTTGTGAAATTATCAAAATACCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTGATCTACAAAATTA-CAAAATACCCTCAGTTTGTAAAATTACCAAAATAC
*
71112907 CCCTAATCTACAAAATTACAGAAATACCCT
1 CCCTGATCTACAAAATTACA-AAATACCCT
71112937 TGACTTTCTA
Statistics
Matches: 157, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
53 37 0.24
54 119 0.76
55 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (53 bp):
CCCTGATCTACAAAATTACAAAATACCCTCAGTTTGTAAAATTACCAAAATAC
Found at i:71113116 original size:27 final size:27
Alignment explanation
Indices: 71113015--71113116 Score: 100
Period size: 27 Copynumber: 3.8 Consensus size: 27
71113005 TTACCAAAAC
* **
71113015 ACCCTTGTAGGGTGAAATGACTAAAAT
1 ACCCTTGTAGGGTAAAATGACTGTAAT
* *
71113042 ACCCTTATTA-GGTAAAAAGACTGTAA-
1 ACCCTT-GTAGGGTAAAATGACTGTAAT
* *
71113068 AGCCCTTGTAGGGTAAAGTGACCGTAAT
1 A-CCCTTGTAGGGTAAAATGACTGTAAT
*
71113096 ACCCTTGTATGGTAAAATGAC
1 ACCCTTGTAGGGTAAAATGAC
71113117 GAATATGCCC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.05
27 54 0.90
28 3 0.05
ACGTcount: A:0.35, C:0.17, G:0.22, T:0.26
Consensus pattern (27 bp):
ACCCTTGTAGGGTAAAATGACTGTAAT
Found at i:71113127 original size:27 final size:28
Alignment explanation
Indices: 71113016--71113128 Score: 85
Period size: 27 Copynumber: 4.2 Consensus size: 28
71113006 TACCAAAACA
* ***
71113016 CCCTTGTAGGGTGAAATGACTAAAATA-
1 CCCTTGTAGGGTAAAATGACCGTAATAG
* * *
71113043 CCCTTATTA-GGTAAAAAGACTGTAA-AG
1 CCCTT-GTAGGGTAAAATGACCGTAATAG
*
71113070 CCCTTGTAGGGTAAAGTGACCGTAATA-
1 CCCTTGTAGGGTAAAATGACCGTAATAG
*
71113097 CCCTTGTATGGTAAAATGA-CG-AATATG
1 CCCTTGTAGGGTAAAATGACCGTAATA-G
71113124 CCCTT
1 CCCTT
71113129 ATGTTCCGTA
Statistics
Matches: 69, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
25 4 0.06
26 5 0.07
27 57 0.83
28 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (28 bp):
CCCTTGTAGGGTAAAATGACCGTAATAG
Found at i:71113963 original size:25 final size:25
Alignment explanation
Indices: 71113925--71114018 Score: 127
Period size: 25 Copynumber: 3.8 Consensus size: 25
71113915 AGGAAGTGCT
*
71113925 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
71113950 AAAAGGGTTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACTG
* *
71113975 AAAAGGGCTTTGCCCCAGCTTA-TC
1 AAAAGGGCTTTGCCCCAGTTTACTG
*
71113999 AAAAGGGTTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
71114019 ATTAAAAGAG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 18 0.30
25 42 0.70
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:71114010 original size:24 final size:24
Alignment explanation
Indices: 71113925--71114031 Score: 117
Period size: 25 Copynumber: 4.4 Consensus size: 24
71113915 AGGAAGTGCT
* *
71113925 AAAAGGGCTATGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTA-TC
* *
71113950 AAAAGGGTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
71113974 GAAAAGGGCTTTGCCCCAGCTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
71113999 AAAAGGGTTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
71114022 AAAAGAGGCT
1 AAAAG-GGCT
71114032 AGGCCTCCAG
Statistics
Matches: 70, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
23 9 0.13
24 20 0.29
25 41 0.59
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:71114272 original size:31 final size:31
Alignment explanation
Indices: 71114237--71114377 Score: 210
Period size: 31 Copynumber: 4.5 Consensus size: 31
71114227 CGTTAACAGT
* *
71114237 AAAGGCTTTGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
71114268 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
71114299 TAAGGCTTTGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
71114330 TAAGGCTTCGACCCACTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
71114361 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
71114378 AACCGTTAAA
Statistics
Matches: 98, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 98 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:71116738 original size:54 final size:53
Alignment explanation
Indices: 71116664--71116792 Score: 143
Period size: 54 Copynumber: 2.4 Consensus size: 53
71116654 ATTATTGAAA
* *
71116664 TACCCTCGACTTGTA-AAATTACCAAAGTACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGA-TT-TACAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
***** *
71116718 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACA-AATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
*
71116772 TACCCTTGATTTACAAATTAC
1 TACCCTCGATTTACAAATTAC
71116793 TGTTTTACCC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
52 2 0.03
53 9 0.14
54 53 0.83
ACGTcount: A:0.29, C:0.22, G:0.09, T:0.39
Consensus pattern (53 bp):
TACCCTCGATTTACAAATTACCAAAGTACCCTCGATTTATAGAATTACCATTT
Found at i:71116798 original size:26 final size:27
Alignment explanation
Indices: 71116691--71116819 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
71116681 ATTACCAAAG
** *
71116691 TACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
71116718 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
71116745 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
71116772 TACCCTTGATTTACA-AATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
71116798 TACCCTCGATTTACA-AATTACT
1 TACCCTCGATTTACAGAATTACT
71116820 AAATACTCTT
Statistics
Matches: 93, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
26 31 0.33
27 62 0.67
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:71116857 original size:27 final size:27
Alignment explanation
Indices: 71116812--71117127 Score: 246
Period size: 27 Copynumber: 11.7 Consensus size: 27
71116802 CTCGATTTAC
* * **
71116812 AAATTA-CTAAATACTCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
71116838 AAATTACCAAAATACCCTTGATCAGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71116865 AAATTACCAAAATACCC-TAGTCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71116891 AAATTACTAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
71116918 AAATTA-CAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
71116944 AAATTACCAAAATACCAC-TGGTTTGTG
1 AAATTACCAAAATACC-CTTGGTTTGTA
* **
71116971 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * **
71116998 AAATTACCAAAGTACCCCTGATTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
71117025 AAATTACAAAAATACCATTGACTTTCTAA
1 AAATTACCAAAATACCCTTG-GTTTGT-A
* * **
71117054 AAATTA-TAGAAATACCATTGGTTTACA
1 AAATTACCA-AAATACCCTTGGTTTGTA
**
71117081 AAATTACTGAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
71117108 GATTTACCAAAACACCCTTG
1 AAATTACCAAAATACCCTTG
71117128 TAGGGTGAAA
Statistics
Matches: 234, Mismatches: 47, Indels: 17
0.79 0.16 0.06
Matches are distributed among these distances:
26 53 0.23
27 154 0.66
28 9 0.04
29 18 0.08
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:71116895 original size:53 final size:53
Alignment explanation
Indices: 71116837--71117040 Score: 248
Period size: 53 Copynumber: 3.8 Consensus size: 53
71116827 CTTGGTTTAC
* ** *
71116837 AAAATTACCAAAATACCCTTGATCAGTAAAATTACCAAAATACCCTAGTCTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTAGTTTGT
* *
71116890 AAAATTACTAAAATACCCCTGGTTTGTAAAATTA-CAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATA-CCCTAGTTTGT
* * * * *
71116943 AAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCC-TAGTTTGT
* ** *
71116997 AAAATTACCAAAGTACCCCTGATTTACAAAATTACAAAAATACC
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACC
71117041 ATTGACTTTC
Statistics
Matches: 129, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
52 7 0.05
53 73 0.57
54 49 0.38
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (53 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCTAGTTTGT
Found at i:71118068 original size:25 final size:25
Alignment explanation
Indices: 71118030--71118119 Score: 105
Period size: 25 Copynumber: 3.6 Consensus size: 25
71118020 AGGAAGTGCT
*
71118030 AAAAGGGCTATGCCCCAGTATACCG
1 AAAAGGGCTTTGCCCCAGTATACCG
** *
71118055 AAAAGGGCTTTGCCTTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTATACCG
71118080 AAAAGGGCTTTGCCCCAGCTTATA---
1 AAAAGGGCTTTGCCCCAG--TATACCG
71118104 AAAAGGGCTTTGCCCC
1 AAAAGGGCTTTGCCCC
71118120 TGTAATTAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
24 16 0.29
25 37 0.66
27 3 0.05
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTATACCG
Found at i:71118129 original size:24 final size:24
Alignment explanation
Indices: 71118080--71118136 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
71118070 TAGTTTACCG
*
71118080 AAAAGGGCTTTGCCCCAGCTTATA
1 AAAAGGGCTTTGCCCCAGCTAATA
* *
71118104 AAAAGGGCTTTGCCCCTG-TAATT
1 AAAAGGGCTTTGCCCCAGCTAATA
71118127 AAAAGAGGCT
1 AAAAG-GGCT
71118137 AGGCCTCCAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 8 0.28
24 21 0.72
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGCTAATA
Found at i:71118377 original size:31 final size:31
Alignment explanation
Indices: 71118342--71118456 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
71118332 CGTTTACAGT
*
71118342 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
71118373 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
71118404 TAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
71118435 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
71118457 CCAAGACTAA
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
30 5 0.06
31 76 0.94
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:71121165 original size:43 final size:42
Alignment explanation
Indices: 71121064--71121179 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
71121054 GGTTTTTGAG
* * *
71121064 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATATCTGGGACATTGACATCGT
* ** *
71121106 ATTGAGATTATGTGTAAGACCATTTCTGGGACATTGACATCGAT
1 A-TGTGATTACATGTAAGACCATATCTGGGACATTGACATCG-T
*
71121150 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATATCTGGGA
71121180 AACGGCATTG
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 1 0.02
43 58 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATATCTGGGACATTGACATCGT
Found at i:71134595 original size:79 final size:81
Alignment explanation
Indices: 71134493--71134677 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
71134483 GCTACTCATT
* * *
71134493 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
71134556 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
71134573 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
71134637 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
71134653 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71134678 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:71134677 original size:40 final size:40
Alignment explanation
Indices: 71134493--71134677 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
71134483 GCTACTCATT
* *
71134493 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
71134533 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
71134573 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
71134612 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
71134653 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
71134678 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:71139111 original size:25 final size:25
Alignment explanation
Indices: 71139077--71139126 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
71139067 AACCAAAGTT
71139077 TGGTTTCTAGTATCATATATACTTA
1 TGGTTTCTAGTATCATATATACTTA
71139102 TGGTTTCTAGTATCATATATACTTA
1 TGGTTTCTAGTATCATATATACTTA
71139127 AACATAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.12, T:0.48
Consensus pattern (25 bp):
TGGTTTCTAGTATCATATATACTTA
Found at i:71140878 original size:42 final size:42
Alignment explanation
Indices: 71140819--71140940 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
71140809 TAAGGCTATT
** *
71140819 TGAGATTATGTGTAAGACTATATTTGGGATATGGCATCGATA
1 TGAGATTCCGTGTAAGACCATATTTGGGATATGGCATCGATA
* * * *
71140861 TGAGACTT-CGTGTAAGACCATAGTTGGGCTATTAGTATCGATA
1 TGAGA-TTCCGTGTAAGACCATATTTGGGATA-TGGCATCGATA
* *
71140904 TGAGATTCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGATTCCGTGTAAGACCATATTTGGGATATGGCAT
71140941 TGGTATGGTG
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
42 30 0.46
43 35 0.54
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (42 bp):
TGAGATTCCGTGTAAGACCATATTTGGGATATGGCATCGATA
Found at i:71143568 original size:20 final size:20
Alignment explanation
Indices: 71143543--71143581 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
71143533 ACCTGAATGC
71143543 TAGCATTATGGGAGGAGACG
1 TAGCATTATGGGAGGAGACG
*
71143563 TAGCATTGTGGGAGGAGAC
1 TAGCATTATGGGAGGAGAC
71143582 ATCTTGACGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.41, T:0.21
Consensus pattern (20 bp):
TAGCATTATGGGAGGAGACG
Found at i:71161353 original size:116 final size:116
Alignment explanation
Indices: 71161149--71161380 Score: 394
Period size: 116 Copynumber: 2.0 Consensus size: 116
71161139 AATAGTAGAG
71161149 GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
1 GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
* *
71161214 AGAATGCTCGATAAATAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
66 AGAAGGCTCGATAAACAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
* * *
71161265 GACCTATTCATGAAGAACGAAGGCTACAAATCGAGGAGCTAGATGAATGTCGGACGCATAAACTG
1 GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
*
71161330 AGAACGGC-CGATAAACAGAAACTATGATAGAACGAGCTCAATACCTTTCCA
66 AGAA-GGCTCGATAAACAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
71161381 ATCAATATAA
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
116 107 0.98
117 2 0.02
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (116 bp):
GACCTATTCATGAAGAACGAAGGCTACAAATCGAAGAGCTAGATGAATGGCGGACGCATAAACCG
AGAAGGCTCGATAAACAGAAACTACGATAGAACGAGCTCAATACCTTTCCA
Found at i:71177031 original size:47 final size:47
Alignment explanation
Indices: 71176977--71177383 Score: 602
Period size: 47 Copynumber: 8.6 Consensus size: 47
71176967 TATTTGAATA
71176977 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
71177024 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
71177071 AATGTGAAAGTGTATATATGTGACAAGGCCTAATGGCCGATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
71177118 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
71177167 AATGTGAAAGTGTATATAGATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
71177216 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
71177263 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
71177310 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * *
71177357 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
71177384 TCCCGAAGGG
Statistics
Matches: 336, Mismatches: 18, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
46 1 0.00
47 245 0.73
49 89 0.26
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:71177261 original size:22 final size:22
Alignment explanation
Indices: 71177234--71177355 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
71177224 CATGTGTATG
71177234 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
71177256 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
71177281 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
71177303 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
71177328 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
71177350 TGTGAT
1 TGTGAT
71177356 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:71179758 original size:39 final size:40
Alignment explanation
Indices: 71179657--71179786 Score: 149
Period size: 39 Copynumber: 3.3 Consensus size: 40
71179647 TCGAATGATG
* * * *
71179657 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
71179696 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
71179737 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
71179776 TCCGGGCTAAG
1 TCCGGGCTAAG
71179787 TTCTGAAGAG
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 36 0.46
40 33 0.42
41 9 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:71179927 original size:40 final size:40
Alignment explanation
Indices: 71179657--71180010 Score: 344
Period size: 40 Copynumber: 8.9 Consensus size: 40
71179647 TCGAATGATG
* ** *
71179657 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCT-AGTGA-TATA
* * ** * *
71179697 TCCGGACTAAGATCCGAAG-GCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TATA
* ** * * *
71179736 TTCCGGGCTAAG-CCCGAAG-GCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TATA
* *
71179776 TCCGGGCTAAGTTCTGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
*
71179816 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
*
71179856 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
*
71179896 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* ** * *
71179936 TCCGTGCTAA-ACCCGAAGAGCATTCATGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
* * * *
71179975 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
71180011 CGTGTATTCG
Statistics
Matches: 277, Mismatches: 31, Indels: 12
0.87 0.10 0.04
Matches are distributed among these distances:
39 68 0.25
40 190 0.69
41 19 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
Found at i:71181804 original size:28 final size:29
Alignment explanation
Indices: 71181739--71181836 Score: 132
Period size: 28 Copynumber: 3.5 Consensus size: 29
71181729 CATGAGATTG
* *
71181739 GCACTAAGTGTGCG-GGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGGTTC-GATTATATA
71181768 GCACTAAGTGTGCGAGGTT-GATTATATA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
*
71181796 GCACTAAGTGTGCGA-GTTCGACTAT-TA
1 GCACTAAGTGTGCGAGGTTCGATTATATA
71181823 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
71181837 GGCTTATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
27 19 0.30
28 27 0.42
29 14 0.22
30 4 0.06
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGGTTCGATTATATA
Found at i:71189783 original size:28 final size:28
Alignment explanation
Indices: 71189715--71189812 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
71189705 CATGAGATTG
* * * *
71189715 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
71189744 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71189772 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
71189799 ACACTGAGTGTGCG
1 GCACTAAGTGTGCG
71189813 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:71189823 original size:27 final size:27
Alignment explanation
Indices: 71189745--71189825 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
71189735 AATTGTACAG
* * *
71189745 CACTAAGTGTGCGAGTTTGATTATATAG
1 CACTAAGTGTGCGA-CTTGAATATATAA
* *
71189773 CACTAAGTGTGCGAGTTGATTATATAA
1 CACTAAGTGTGCGACTTGAATATATAA
*
71189800 CACTGAGTGTGCGGACTT-AATATATA
1 CACTAAGTGTGC-GACTTGAATATATA
71189826 TTTTTGAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
27 29 0.62
28 18 0.38
ACGTcount: A:0.31, C:0.12, G:0.23, T:0.33
Consensus pattern (27 bp):
CACTAAGTGTGCGACTTGAATATATAA
Found at i:71192481 original size:40 final size:40
Alignment explanation
Indices: 71192426--71192600 Score: 314
Period size: 40 Copynumber: 4.4 Consensus size: 40
71192416 TATGTGCATA
71192426 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
* *
71192466 GCATTCGCGCGGGTTATTATAACCGGGTTAAGTCCCAAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
71192506 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
71192546 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
*
71192586 GCATTCGTGCTGGTT
1 GCATTCGTGCGGGTT
71192601 GTTACATCCG
Statistics
Matches: 128, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 128 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (40 bp):
GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:71192624 original size:80 final size:80
Alignment explanation
Indices: 71192426--71192624 Score: 247
Period size: 80 Copynumber: 2.5 Consensus size: 80
71192416 TATGTGCATA
* * ** *
71192426 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGCGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAATCGAGCCAAATCCCGAAGGCATTCGCGCGGGTTATTATAACCG
71192491 GGTTAAGTCCCAAAG
66 GGTTAAGTCCCAAAG
* ** * *
71192506 GCATTCGTGCGGGTTATTATAATCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCGGGTTATTATAATCGAGCCAAATCCCGAAGGCATTCGCGCGGGTTATTATAACCG
*
71192571 GGTTAAGTCCCGAAG
66 GGTTAAGTCCCAAAG
* * * *
71192586 GCATTCGTGCTGGTTGTTA-CATCCGAGCCAAATTCCGAA
1 GCATTCGTGCGGGTTATTATAAT-CGAGCCAAATCCCGAA
71192625 AGTATTTATG
Statistics
Matches: 107, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
79 2 0.02
80 105 0.98
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (80 bp):
GCATTCGTGCGGGTTATTATAATCGAGCCAAATCCCGAAGGCATTCGCGCGGGTTATTATAACCG
GGTTAAGTCCCAAAG
Found at i:71196551 original size:85 final size:85
Alignment explanation
Indices: 71196408--71196586 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
71196398 GGCCGGCCAT
71196408 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
71196473 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
71196493 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
71196558 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
71196578 GGGCATGGG
1 GAGCATGGG
71196587 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:71198823 original size:47 final size:47
Alignment explanation
Indices: 71198772--71199258 Score: 668
Period size: 47 Copynumber: 10.1 Consensus size: 47
71198762 TTAGGATTTT
* *
71198772 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
71198819 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
71198870 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
71198917 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
*
71198968 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
71199015 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
*
71199068 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
71199115 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
71199162 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
71199209 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
71199256 ATG
1 ATG
71199259 CGAAACGTGT
Statistics
Matches: 396, Mismatches: 30, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
47 262 0.66
48 1 0.00
49 4 0.01
51 86 0.22
52 1 0.00
53 42 0.11
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:71198874 original size:24 final size:24
Alignment explanation
Indices: 71198846--71198921 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
71198836 CCGTATATAT
71198846 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
71198870 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
71198893 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
71198917 ATGTG
1 ATGTG
71198922 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:71198972 original size:24 final size:24
Alignment explanation
Indices: 71198944--71199019 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
71198934 CCGTATATAT
71198944 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
71198968 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
71198991 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
71199015 ATGTG
1 ATGTG
71199020 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:71199110 original size:100 final size:98
Alignment explanation
Indices: 71198772--71199258 Score: 801
Period size: 98 Copynumber: 5.0 Consensus size: 98
71198762 TTAGGATTTT
*
71198772 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
71198837 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
71198870 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
71198935 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
71198968 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
71199033 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
66 CG--TATATATATGTGTGATAAGGCCGAATGGCCA
71199068 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA--
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
71199131 C--ATGTGTATGTGTGATAAGGCCGAATGGCCA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
71199162 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
* *
71199227 TG-A-ATATATGTG-G-TAAGGCCGAATGGCTA
66 CGTATATATATGTGTGATAAGGCCGAATGGCCA
71199256 ATG
1 ATG
71199259 CGAAACGTGT
Statistics
Matches: 370, Mismatches: 14, Indels: 14
0.93 0.04 0.04
Matches are distributed among these distances:
94 105 0.28
95 1 0.00
96 7 0.02
97 1 0.00
98 163 0.44
100 93 0.25
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
CGTATATATATGTGTGATAAGGCCGAATGGCCA
Done.