Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 223 of 295
Found at i:71199321 original size:46 final size:46
Alignment explanation
Indices: 71199232--71199322 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
71199222 GAACATGAAT
* * * *
71199232 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
71199278 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
71199323 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:71199571 original size:37 final size:37
Alignment explanation
Indices: 71199467--71199575 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
71199457 GGAAATATAT
*
71199467 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
71199504 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * * *
71199541 TCCGGGTAAGACCCGATAACTTCATATGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
71199576 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:71211198 original size:40 final size:40
Alignment explanation
Indices: 71211154--71211233 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
71211144 AGAATAACTT
*
71211154 AGTCATTGTTTTACTTAATCAAACATCTTAACGAGGCCTA
1 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
71211194 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
1 AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
71211234 TAATAACACA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.34
Consensus pattern (40 bp):
AGTCATGGTTTTACTTAATCAAACATCTTAACGAGGCCTA
Found at i:71217452 original size:40 final size:41
Alignment explanation
Indices: 71217387--71217483 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 41
71217377 TAAGTCGATA
*
71217387 TCGCACACTTAGTGCC-TCATATAGCCAAAGC-TATGCCAAC
1 TCGCACACTTAGTGCCATCATATAGCCAAAGCTTAT-CAAAC
* * * *
71217427 TCGCACACTTAGTGCCAT-TTGTAGCCGAAGCTTTATTAAAC
1 TCGCACACTTAGTGCCATCATATAGCCAAAGC-TTATCAAAC
71217468 -CGCACACTTAGTGCCA
1 TCGCACACTTAGTGCCA
71217484 AACACTTTCG
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 42 0.86
41 4 0.08
42 3 0.06
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATCATATAGCCAAAGCTTATCAAAC
Found at i:71217817 original size:8 final size:8
Alignment explanation
Indices: 71217804--71217833 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
71217794 AGTCCCTATT
71217804 TCACAAAA
1 TCACAAAA
71217812 TCACAAAA
1 TCACAAAA
71217820 TCACAAAA
1 TCACAAAA
71217828 TACACA
1 T-CACA
71217834 TAATTTGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (8 bp):
TCACAAAA
Found at i:71232924 original size:28 final size:28
Alignment explanation
Indices: 71232861--71233042 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
71232851 ATATTAAGTC
*
71232861 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71232888 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71232916 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
71232944 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71232972 CGCACACTTAGTGCTATATAATTAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
71233000 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
71233029 CGTACACTTAGTGC
1 CGCACACTTAGTGC
71233043 CAATCTCATG
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 103 0.72
29 19 0.13
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71254460 original size:43 final size:42
Alignment explanation
Indices: 71254316--71254481 Score: 122
Period size: 43 Copynumber: 3.9 Consensus size: 42
71254306 ATATAGCTCG
* * * * *
71254316 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
* * * * * * *
71254357 TATCGATGCCACTGTCCTAAACAGGGTCTTACACGAAATC-GA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
* *
71254399 T-TAATGAGCCAATTTCCCAGACATGGTCTTACACGTAATCTCAA
1 TACAAT--GCCAATGTCCCAGACATGGTCTTACACGTAATCTC-A
* * *
71254443 TACAATGCCAATGTCCCAGATATGGTCCTACATGTAATC
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATC
71254482 ACATCTCGAT
Statistics
Matches: 93, Mismatches: 25, Indels: 12
0.72 0.19 0.09
Matches are distributed among these distances:
40 2 0.02
41 2 0.02
42 35 0.38
43 49 0.53
44 2 0.02
45 3 0.03
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (42 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAATCTCA
Found at i:71255596 original size:18 final size:18
Alignment explanation
Indices: 71255573--71255607 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71255563 ATATTCACAT
*
71255573 TGTAACACCCCTAACCCA
1 TGTAACACCCCAAACCCA
71255591 TGTAACACCCCAAACCC
1 TGTAACACCCCAAACCC
71255608 GGCCCAAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.46, G:0.06, T:0.14
Consensus pattern (18 bp):
TGTAACACCCCAAACCCA
Found at i:71256377 original size:14 final size:14
Alignment explanation
Indices: 71256358--71256402 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
71256348 AACTCATCTT
*
71256358 AGTTTAATTAAATG
1 AGTTTAATTTAATG
*
71256372 AGTTT-ATTTGATG
1 AGTTTAATTTAATG
*
71256385 AATTTAATTTAATG
1 AGTTTAATTTAATG
71256399 AGTT
1 AGTT
71256403 GCTTCTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.49
Consensus pattern (14 bp):
AGTTTAATTTAATG
Found at i:71257408 original size:29 final size:29
Alignment explanation
Indices: 71257375--71257434 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
71257365 ATAACCAAAC
*
71257375 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
71257404 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
71257433 CT
1 CT
71257435 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:71257427 original size:15 final size:15
Alignment explanation
Indices: 71257381--71257428 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
71257371 AAACCTACAA
*
71257381 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
71257396 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
71257410 AAACTTCATATCCAT
1 AAACTTCATATCCAT
71257425 AAAC
1 AAAC
71257429 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:71259290 original size:15 final size:15
Alignment explanation
Indices: 71259266--71259295 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71259256 CTAATGTATT
71259266 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
71259281 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
71259296 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:71268198 original size:95 final size:95
Alignment explanation
Indices: 71268035--71268226 Score: 375
Period size: 95 Copynumber: 2.0 Consensus size: 95
71268025 ACAAGGCCCA
71268035 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
1 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
71268100 TGAAACAAGACACACGCCCGTGTAGACTTG
66 TGAAACAAGACACACGCCCGTGTAGACTTG
71268130 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
1 AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
*
71268195 TGAAACAAGACACACGCTCGTGTAGACTTG
66 TGAAACAAGACACACGCCCGTGTAGACTTG
71268225 AA
1 AA
71268227 CATGGTTGTG
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.21
Consensus pattern (95 bp):
AAACATCTCTTGGAAGCTACTCGGGACTAACTCGGGTCCTTTAACCAACACTAGGAAAATGAACT
TGAAACAAGACACACGCCCGTGTAGACTTG
Found at i:71270599 original size:27 final size:27
Alignment explanation
Indices: 71270569--71270621 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
71270559 TCATACAACC
* *
71270569 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
71270596 CATGTAACAATAATTTGCCATTCAAT
1 CATGTAACAATAATTTAACATTCAAT
71270622 CTCACATGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.38
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:71272700 original size:50 final size:48
Alignment explanation
Indices: 71272536--71272763 Score: 177
Period size: 47 Copynumber: 4.8 Consensus size: 48
71272526 AGGGTATAAT
* *
71272536 GCCGATGCCATGTCCCAGACATGATCTTACACTGGCTCATCCATCAA-GT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-T-CA-CAATGTG
* * * * *
71272585 --CGATGCCATGTCCCAAACATGGTTTTACA-TTGACTATCGA-AATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTC-ACAAT-GTG
** * * *
71272632 GTTGACGCCATGTTCCAGACATGGTCTTATACTAGCTCTCACATATCCGT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACA-AT--GTG
* *
71272682 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATGTG
*
71272730 GCTGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
71272764 ACACAAATAA
Statistics
Matches: 143, Mismatches: 24, Indels: 27
0.74 0.12 0.14
Matches are distributed among these distances:
44 2 0.01
45 1 0.01
46 17 0.12
47 44 0.31
48 7 0.05
49 30 0.21
50 40 0.28
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAATGTG
Found at i:71279278 original size:17 final size:18
Alignment explanation
Indices: 71279246--71279279 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71279236 CTCTCCTAAA
71279246 ACGATTCTGATCTTTCTC
1 ACGATTCTGATCTTTCTC
71279264 ACGATTCTG-TCTTTCT
1 ACGATTCTGATCTTTCT
71279280 GTATGCTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.15, C:0.26, G:0.12, T:0.47
Consensus pattern (18 bp):
ACGATTCTGATCTTTCTC
Found at i:71284568 original size:138 final size:138
Alignment explanation
Indices: 71284318--71284871 Score: 746
Period size: 138 Copynumber: 4.1 Consensus size: 138
71284308 TAAAGAATAT
* * * *
71284318 ATATAATTAACATTTGAATTTTATTCATACAAAATATTAATTGTATATA-TTTACAAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * *
71284382 AATATGAACAATTATATTAATTAATTTCGGTTAAAATATAAAACACATGAAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
71284447 TGGAAAGA
131 TGGAAAGA
* ***
71284455 ATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTATTGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * *
71284520 AATATAAACATTTATATAAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTTT
66 AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
71284585 TGGAAAGA
131 TGGAAAGA
* *
71284593 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATCTTACCGAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * * *
71284658 AGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACATGGAAATTAATATTCTT
66 AATAT-AAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTT
*
71284723 TTGGAAA-T
130 TTGGAAAGA
* *
71284731 A-AT-A-TAA-ATATGAATTTGATTCATACAAATTATTAATTGTATATATTTTATCAAATTTATT
1 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
* * * * *
71284792 AATATAAACAGTTATATTAATTAATTTC-AGTCAAAATATAAAATATATAAAAATTAATGTTC-T
66 AATATAAACAATTATATTAATTAATTTCGA-TCAAAATATAAAACACATGAAAATTAATATTCTT
* *
71284855 TTGAAAAGT
130 TTGGAAAGA
71284864 ATATAATT
1 ATATAATT
71284872 TGTTTTTCTA
Statistics
Matches: 369, Mismatches: 41, Indels: 15
0.87 0.10 0.04
Matches are distributed among these distances:
132 8 0.02
133 48 0.13
134 56 0.15
135 4 0.01
136 2 0.01
137 47 0.13
138 144 0.39
139 60 0.16
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (138 bp):
ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCAAATTTATT
AATATAAACAATTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTT
TGGAAAGA
Found at i:71284816 original size:272 final size:274
Alignment explanation
Indices: 71284318--71284871 Score: 787
Period size: 272 Copynumber: 2.0 Consensus size: 274
71284308 TAAAGAATAT
* *
71284318 ATATAATTAACATTTGAATTTTATTCATACAAAATATTAATTGTATATATTTACAAAATTTATTA
1 ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTACAAAATTTATTA
* * * * *
71284383 ATATGAACAATTATATTAATTAATTTCGGTTAAAATATAAAACACATGAAAATTAATATTCTTTT
66 ATATAAAAAAGTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTTT
**
71284448 GGAAAGAATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTATTGA
131 GGAAAGAATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTATCAA
* **
71284513 ATTTATTAATATAAACATTTATATAAATTAATTTC-GATCAAAATATAAAAGACATGGAAATTAA
196 ATTTATTAATATAAACAGTTATATAAATTAATTTCAG-TCAAAATATAAAAGACATAAAAATTAA
*
71284577 TATTCTTTTGGAAAGA
260 TATTC-TTTGAAAAGA
* **
71284593 ATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATCTTACCGAATTTATT
1 ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATAT-TTACAAAATTTATT
* * *
71284658 AGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACATGGAAATTAATATTCTT
65 AATAT-AAAAAAGTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTT
* * *
71284723 TTGGAAA-TA-AT-A-TAA-ATATGAATTTGATTCATACAAATTATTAATTGTATATATTTTATC
129 TTGGAAAGAATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTATC
* * *
71284783 AAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAATATATAAAAATTA
194 AAATTTATTAATATAAACAGTTATATAAATTAATTTCAGTCAAAATATAAAAGACATAAAAATTA
* *
71284848 ATGTTCTTTGAAAAGT
259 ATATTCTTTGAAAAGA
71284864 ATATAATT
1 ATATAATT
71284872 TGTTTTTCTA
Statistics
Matches: 249, Mismatches: 27, Indels: 10
0.87 0.09 0.03
Matches are distributed among these distances:
271 16 0.06
272 103 0.41
273 4 0.02
274 1 0.00
275 49 0.20
276 17 0.07
277 59 0.24
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (274 bp):
ATATAATTAACATATGAATTTGATTCATACAAAATATTAATTGTATATATTTACAAAATTTATTA
ATATAAAAAAGTATATTAATTAATTTCGATCAAAATATAAAACACATGAAAATTAATATTCTTTT
GGAAAGAATATAATTAATATATGAATTTGATTCAAACAAAATATTAATTGTATATATTTTATCAA
ATTTATTAATATAAACAGTTATATAAATTAATTTCAGTCAAAATATAAAAGACATAAAAATTAAT
ATTCTTTGAAAAGA
Found at i:71285081 original size:134 final size:138
Alignment explanation
Indices: 71284909--71285204 Score: 374
Period size: 134 Copynumber: 2.2 Consensus size: 138
71284899 GAATAATCCT
71284909 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
* *
71284974 ATCTTACCGAATTTATTAGTATAAAAAAAG-TATATTAATTAATTT-TGATCAAAATATAAAACA
66 ATCTTACCAAATTTATTA--ATAAAAAAAGTTATATTAATTAATTTCAG-TCAAAATATAAAACA
71285037 CATGGAAATTA
128 CATGGAAATTA
* *
71285048 ATATTCTTTTGGAAA-TA-AT-A-TAA-ATATGAATTTGATTCATACAAATTATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
* * * * * *
71285108 ATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAGATAT
66 ATCTTACCAAATTTATTAATAAAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAACACAT
**
71285173 AAAAATTA
131 GGAAATTA
* * *
71285181 ATGTTC-TTTGAAAAGTATATAATT
1 ATATTCTTTTGGAAAGAATATAATT
71285205 TGTTTTTCTA
Statistics
Matches: 137, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
132 15 0.11
133 44 0.32
134 54 0.39
135 4 0.03
136 2 0.01
137 2 0.01
138 1 0.01
139 15 0.11
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.41
Consensus pattern (138 bp):
ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
ATCTTACCAAATTTATTAATAAAAAAAGTTATATTAATTAATTTCAGTCAAAATATAAAACACAT
GGAAATTA
Found at i:71285182 original size:333 final size:333
Alignment explanation
Indices: 71284576--71285266 Score: 1373
Period size: 333 Copynumber: 2.1 Consensus size: 333
71284566 ATGGAAATTA
71284576 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
71284641 ATCTTACCGAATTTATTAGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
66 ATCTTACCGAATTTATTAGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
71284706 TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
131 TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
*
71284771 ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAT
196 ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAG
71284836 ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
261 ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
71284901 ATAATCCT
326 ATAATCCT
71284909 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
1 ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
71284974 ATCTTACCGAATTTATTAGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
66 ATCTTACCGAATTTATTAGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
71285039 TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
131 TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
71285104 ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAG
196 ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAG
71285169 ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
261 ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
71285234 ATAATCCT
326 ATAATCCT
71285242 ATATTCTTTTGGAAAGAATATAATT
1 ATATTCTTTTGGAAAGAATATAATT
71285267 CATTTTTCTA
Statistics
Matches: 357, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
333 357 1.00
ACGTcount: A:0.43, C:0.07, G:0.08, T:0.41
Consensus pattern (333 bp):
ATATTCTTTTGGAAAGAATATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATAT
ATCTTACCGAATTTATTAGTATAAAAAAAGTATATTAATTAATTTTGATCAAAATATAAAACACA
TGGAAATTAATATTCTTTTGGAAATAATATAAATATGAATTTGATTCATACAAATTATTAATTGT
ATATATTTTATCAAATTTATTAATATAAACAGTTATATTAATTAATTTCAGTCAAAATATAAAAG
ATATAAAAATTAATGTTCTTTGAAAAGTATATAATTTGTTTTTCTAACTTTCCATTAATAGGGGA
ATAATCCT
Found at i:71285348 original size:75 final size:75
Alignment explanation
Indices: 71285222--71285377 Score: 267
Period size: 75 Copynumber: 2.1 Consensus size: 75
71285212 CTAACTTTCC
* *
71285222 ATTAATAGGGGAATAATCCTATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
1 ATTAATAAGGGAATAATCATATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
71285287 TGCCTTCTCT
66 TGCCTTCTCT
* * *
71285297 ATTAATAAGGGAATAATCATATTTTTTTTTGGAAAGAATATAATTCCTTTTTCTAACTTTTCATT
1 ATTAATAAGGGAATAATCATATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
71285362 TGCCTTCTCT
66 TGCCTTCTCT
71285372 ATTAAT
1 ATTAAT
71285378 TAGAGAATCT
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
75 76 1.00
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (75 bp):
ATTAATAAGGGAATAATCATATATTCTTTTGGAAAGAATATAATTCATTTTTCTAACTTTTCATT
TGCCTTCTCT
Found at i:71288825 original size:28 final size:28
Alignment explanation
Indices: 71288763--71288885 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
71288753 ATATTAAGTC
* *
71288763 CGCACACTCAGTTCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
71288790 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
71288818 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
71288846 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
71288875 CGCACACTTAG
1 CGCACACTTAG
71288886 CGCCAATCTC
Statistics
Matches: 86, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 21 0.24
28 49 0.57
29 16 0.19
ACGTcount: A:0.33, C:0.28, G:0.11, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71296982 original size:28 final size:28
Alignment explanation
Indices: 71296919--71297041 Score: 185
Period size: 28 Copynumber: 4.4 Consensus size: 28
71296909 ATATTAAGTC
*
71296919 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
71296946 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
71296974 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
71297002 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
71297031 CGCACACTTAG
1 CGCACACTTAG
71297042 CGCCAATCTC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
27 22 0.25
28 51 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:71306819 original size:43 final size:43
Alignment explanation
Indices: 71306753--71306870 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
71306743 AACTCGTACA
* **
71306753 ATGCCAACATCCCAGATGT-GGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACATAGGTCTTACATGTAATCAAATA-CG
* * *
71306796 ATGCCACTATCCCAGACA-AGGTCTTACACGAAATCAAATACG
1 ATGCCAATATCCCAGACATAGGTCTTACATGTAATCAAATACG
*
71306838 ATGCCAATGTCCCAGACATA-GTCTTACATGTAA
1 ATGCCAATATCCCAGACATAGGTCTTACATGTAA
71306871 ACCTCAGATC
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATAGGTCTTACATGTAATCAAATACG
Found at i:71306853 original size:42 final size:42
Alignment explanation
Indices: 71306772--71306914 Score: 137
Period size: 42 Copynumber: 3.3 Consensus size: 42
71306762 TCCCAGATGT
* * *
71306772 GGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAA
1 GGTCTTACATGAAATCAAATA-CGATGCCAATGTCCCAGACAA
*
71306815 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACATA
1 GGTCTTACATGAAATCAAATACGATGCCAATGTCCCAGACA-A
* * * **
71306858 -GTCTTACATGTAAACCTCAGAT-CGATGCCAACGTCCTAGACGT
1 GGTCTTACATG-AAA--TCAAATACGATGCCAATGTCCCAGACAA
*
71306901 GGTCTTACAGGAAA
1 GGTCTTACATGAAA
71306915 ACACATATCG
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
42 27 0.32
43 26 0.31
44 26 0.31
45 5 0.06
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAATACGATGCCAATGTCCCAGACAA
Found at i:71319342 original size:42 final size:42
Alignment explanation
Indices: 71319283--71319370 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
71319273 TAGTCACTTT
* *
71319283 TTTCAACTGACGATAATGAATACACATTCTCTTTGTGCCGTC
1 TTTCAACTGACGATAATGAATACACATTCTCATCGTGCCGTC
71319325 TTTCAACTGACGATAATGAATACACATTCTCATCGTGCCGTC
1 TTTCAACTGACGATAATGAATACACATTCTCATCGTGCCGTC
71319367 TTTC
1 TTTC
71319371 TTTTTGACAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (42 bp):
TTTCAACTGACGATAATGAATACACATTCTCATCGTGCCGTC
Found at i:71322392 original size:42 final size:43
Alignment explanation
Indices: 71322283--71322444 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 43
71322273 AACTCGTACA
* * * *
71322283 ATGCCAACGTCCCAGACGTGGTCTTACATGCAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
71322326 ATGCCACTGTCCCAGACAAGGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* ** *
71322368 AT-CCTAATGTCCCAGACATGGTCTTACATGTAAATCCTAGATCG
1 ATGCC-AATGTCCCAGACATGGTCTTACACG-AAATCAAATATCG
* * * * *
71322412 GTGCCAACGTCCTAGACGTGGTCTTAGACGAAA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAA
71322445 ATGCATATCG
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
41 2 0.02
42 26 0.27
43 44 0.45
44 23 0.24
45 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:71334719 original size:93 final size:95
Alignment explanation
Indices: 71334509--71334740 Score: 233
Period size: 93 Copynumber: 2.5 Consensus size: 95
71334499 TGGGATAAAT
* * *
71334509 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATGCGTGCTGATGCGTGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATAT-CGTGCTGAAGCATGTCC
* * *
71334574 CAGACACGTCTTACATTGGCTATCTCTGTCAA
65 CAGACACGTCTTACACTAGCAATCTCTG-CAA
* * * * * * *
71334606 GGCCAATG-CATATCCAAGACAT-ATCTTACTCTGGCACTTATAATAT-G-GCTGAAGCATGTCC
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT-ATATCGTGCTGAAGCATGTCC
* *
71334667 CAGACATGTCTTACACTAG-AACTCGTCTG-GA
65 CAGACACGTCTTACACTAGCAA-TC-TCTGCAA
*
71334698 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCAT
71334741 TGTAAGAGTA
Statistics
Matches: 107, Mismatches: 23, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
92 8 0.07
93 42 0.39
94 20 0.19
95 15 0.14
96 16 0.15
97 6 0.06
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (95 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATATATCGTGCTGAAGCATGTCCC
AGACACGTCTTACACTAGCAATCTCTGCAA
Found at i:71348076 original size:47 final size:46
Alignment explanation
Indices: 71348022--71348163 Score: 185
Period size: 47 Copynumber: 3.0 Consensus size: 46
71348012 AGGATTTTAT
71348022 GTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCAAC
1 GTGATGAATGTGAA-GTGTATATATGTGATAAGGCCGAATGGCCAAC
* * * *
71348069 GTGATGAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAAT
1 GTGATGAATGTGAA-GTGTATATATGTGATAAGGCCGAATGGCCAAC
* * * *
71348116 GTGATGAACGTGGAAGTGTATATATGTGGTAAAGCCGAATGGCTAAC
1 GTGATGAATGT-GAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
71348163 G
1 G
71348164 CGAAACGTGT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
47 78 0.96
48 3 0.04
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.26
Consensus pattern (46 bp):
GTGATGAATGTGAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
Found at i:71348221 original size:46 final size:46
Alignment explanation
Indices: 71348137--71348227 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
71348127 GGAAGTGTAT
* *
71348137 ATATGTGGTAAAGCCGAATGGCTAACGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAACGCGAAACATGTATGAGATGG
* * * *
71348183 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAACGCGAAACATGTATGAGATG
71348228 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAACGCGAAACATGTATGAGATGG
Found at i:71350471 original size:14 final size:14
Alignment explanation
Indices: 71350452--71350481 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
71350442 TATTTTCAAG
71350452 ATAGATTAACGCAT
1 ATAGATTAACGCAT
*
71350466 ATAGATTCACGCAT
1 ATAGATTAACGCAT
71350480 AT
1 AT
71350482 TTATAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (14 bp):
ATAGATTAACGCAT
Found at i:71355200 original size:26 final size:26
Alignment explanation
Indices: 71355159--71355224 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
71355149 ACATTGTTGG
* * *
71355159 TCACACGAGCTATGAAATAGGCCTGC
1 TCACACGAGTTGTGAAATAGGACTGC
* * *
71355185 TCATACGAGTTGTGAAATGGGATTGC
1 TCACACGAGTTGTGAAATAGGACTGC
71355211 TCACACGAGTTGTG
1 TCACACGAGTTGTG
71355225 GGTCGGAATG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (26 bp):
TCACACGAGTTGTGAAATAGGACTGC
Found at i:71356944 original size:39 final size:39
Alignment explanation
Indices: 71356888--71357135 Score: 345
Period size: 39 Copynumber: 6.4 Consensus size: 39
71356878 ATAATGGAGA
* * *
71356888 ATTATATCCGGGTTAAGTTCCGAAGGCATTTGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
71356927 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
71356966 ATTATATCCGGGCTAAGTCCCGAAGGAATTCGTACTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
71357005 ATTATATCCGGGCTAAGTCCCGAAGGCATTTGTGTTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* *
71357044 GTTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
* * * *
71357083 ATTATATCCGGGCTAAAGTCCTGTAGTC-TTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGT
71357122 ATTATATCCGGGCT
1 ATTATATCCGGGCT
71357136 TAAAGTCCTG
Statistics
Matches: 189, Mismatches: 19, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 179 0.95
40 10 0.05
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (39 bp):
ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
Found at i:71362525 original size:47 final size:47
Alignment explanation
Indices: 71362440--71362879 Score: 587
Period size: 47 Copynumber: 9.3 Consensus size: 47
71362430 TAATTGAATA
* *
71362440 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTATATGTGAG-ATAAGGCCGAATGGCCAATGTGATG
* * *
71362488 AATGTGAACATGCATATATGAGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
71362535 AAAGTGAACATGTGTATGTGTGATAAGACCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * *
71362582 AATGTGAACATGCATATATGAGATAAGACCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* *
71362629 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* *
71362676 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * *
71362723 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * * *
71362770 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
71362817 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
71362864 AATGTGAA-AGTGTATA
1 AATGTGAACA-TGTATA
71362880 AATGTGATAA
Statistics
Matches: 352, Mismatches: 38, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
46 1 0.00
47 333 0.95
48 17 0.05
49 1 0.00
ACGTcount: A:0.33, C:0.11, G:0.30, T:0.25
Consensus pattern (47 bp):
AATGTGAACATGTATATGTGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:71362878 original size:141 final size:141
Alignment explanation
Indices: 71362440--71362889 Score: 654
Period size: 141 Copynumber: 3.2 Consensus size: 141
71362430 TAATTGAATA
* **
71362440 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
1 AATGTGAACA-TGTATATATGTG-ATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATA
* *
71362504 TATGAGATAAGGCCGAGTGGCCAATGTGATGAAAGTGAACATGTGTATGTGTGATAAGACCGAAT
64 TATGAGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAAT
71362569 GGCCAATGTGATG
129 GGCCAATGTGATG
* *
71362582 AATGTGAACATGCATATATGAGAT-AAGACCGAATGGCCAATGTGATGAATGTGAACATGCATAT
1 AATGTGAACATGTATATATGTGATAAAG-CCGAATGGCCAATGTGATGAATGTGAACATGCATAT
*
71362646 ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATG
65 ATGAGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATG
71362711 GCCAATGTGATG
130 GCCAATGTGATG
* * * * ** *
71362723 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACAGGTGTATG
1 AATGTGAACATGTATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
* * * *
71362788 TGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCATGTGTATGTGAGATAAGGCCTAATGG
66 TGAGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGG
*
71362853 CCGATGTGATG
131 CCAATGTGATG
*
71362864 AATGTGAA-AGTGTATAAATGTGATAA
1 AATGTGAACA-TGTATATATGTGATAA
71362890 GTCCCGAAGG
Statistics
Matches: 278, Mismatches: 26, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
140 2 0.01
141 255 0.92
142 20 0.07
143 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.30, T:0.26
Consensus pattern (141 bp):
AATGTGAACATGTATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
TGAGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGG
CCAATGTGATG
Found at i:71363065 original size:37 final size:37
Alignment explanation
Indices: 71363009--71363088 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
71362999 CCGGGCTCTA
* * *
71363009 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
71363046 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
71363083 AAGACT
1 AAGACT
71363089 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:71364968 original size:40 final size:40
Alignment explanation
Indices: 71364882--71365263 Score: 499
Period size: 40 Copynumber: 9.5 Consensus size: 40
71364872 GAATGATGTT
*
71364882 CGGGCTAAGTCCCGAAG-GC-TT-GTGCTAAGTGACCATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATC
* * * *
71364921 CGGACTAAGAT-CCGAAG-GCATTTGTGCGAATTGATATATC
1 CGGGCTAAG-TCCCGAAGAGCATTCGTGC-TAGTGATATATC
* * * *
71364961 CGGACTAAGAT-CCGAAG-GCATTTGTGCGAATTGGATATATTC
1 CGGGCTAAG-TCCCGAAGAGCATTCGTGC-TAGT-GATATA-TC
71365003 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
71365043 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
71365083 CGGGCTAAGTCCCGAAGATCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
71365123 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
71365163 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
*
71365203 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
* *
71365243 CGTGCTAAATCCCGAAGAGCA
1 CGGGCTAAGTCCCGAAGAGCA
71365264 ATCATGCTGG
Statistics
Matches: 315, Mismatches: 20, Indels: 15
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.05
40 251 0.80
41 21 0.07
42 18 0.06
43 9 0.03
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATC
Found at i:71365032 original size:23 final size:23
Alignment explanation
Indices: 71365006--71365072 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
71364996 TATATTCCGG
71365006 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
* * * *
71365029 GCT-AGT---G-ATA-TATCCGG
1 GCTAAGTCCCGAAGAGCATTCGT
71365046 GCTAAGTCCCGAAGAGCATTCGT
1 GCTAAGTCCCGAAGAGCATTCGT
71365069 GCTA
1 GCTA
71365073 GTGATATATC
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 7 0.23
18 5 0.17
19 1 0.03
21 1 0.03
22 5 0.17
23 11 0.37
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (23 bp):
GCTAAGTCCCGAAGAGCATTCGT
Found at i:71378535 original size:3 final size:3
Alignment explanation
Indices: 71378527--71378561 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
71378517 TTTGTTTACC
*
71378527 TAT TAT TAT TAT TAT TAT TAT TCAT TTT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT T
71378562 CTTTAATTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:71386592 original size:43 final size:42
Alignment explanation
Indices: 71386438--71386608 Score: 148
Period size: 43 Copynumber: 4.0 Consensus size: 42
71386428 ATATTGTACA
* * * *
71386438 ATGCTAATGTCCCAGACGTGGTCTTACATGCTATCACATACCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* * * *
71386481 ATGCCATTGTCCCAGATAG-GGTCTTACACGAATCAAATA-CA
1 ATGCCAATGTCCCAGA-CGTGGTCTTACACGAATCACATATCG
* * * *
71386522 ATGTCGATGTCCTAGACATGGTCTTACACGTAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-AATCACATATCG
* * * *
71386565 ATGCCAACGTCCCAGATGTGATCTTACACGAGAACACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGA-ATCACATATCG
71386608 A
1 A
71386609 AAATCCTATG
Statistics
Matches: 100, Mismatches: 23, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 24 0.24
42 16 0.16
43 59 0.59
44 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAATCACATATCG
Found at i:71398111 original size:43 final size:43
Alignment explanation
Indices: 71398045--71398244 Score: 237
Period size: 43 Copynumber: 4.7 Consensus size: 43
71398035 ATACCGTACA
* *
71398045 ATGCCAACGTCCCAGACGTGGTCTTACATGCT-ATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG-TAATCACATATCG
* ** *
71398088 ATGCCACTGTCCCAGACACGGTCTTACACG-AATCAAATA-CG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* * * * *
71398129 ATGCCGATGTCCCTGACATGGTCTTACACGTAATCATATAT-A
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
* *
71398171 ACTGCCAATATCCCAGACGTGGTCTTACACGTAATCACTTATCG
1 A-TGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
71398215 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACGTGGTCTTACACG
71398245 AGAACACATA
Statistics
Matches: 132, Mismatches: 20, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
41 28 0.21
42 16 0.12
43 87 0.66
44 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCACATATCG
Found at i:71408946 original size:46 final size:46
Alignment explanation
Indices: 71408893--71409068 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
71408883 TATTTGGGCA
* *
71408893 TCCGAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
71408939 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * * *
71408986 TCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
71409032 CCCGAGCTCGTTGAATTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71409069 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 64 0.59
47 27 0.25
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:71409051 original size:93 final size:93
Alignment explanation
Indices: 71408889--71409061 Score: 256
Period size: 93 Copynumber: 1.9 Consensus size: 93
71408879 GGGATATTTG
* *** *
71408889 GGCATCCGAACTCGTTGAGTTGAGACCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGACCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAA
71408954 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * * *
71408982 GGCATCCGAGCTCATTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAA
1 GGCATCCGAACTCATTGAGTTGAGACCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAA
71409047 TTGAGTCCGAGTTCA
66 TTGAGTCCGAGTTCA
71409062 CTTATGGGCG
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGACCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAA
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:71410661 original size:54 final size:52
Alignment explanation
Indices: 71410548--71410649 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 52
71410538 CACGGTTTCA
*
71410548 CACACGGGCGTGTGACTGGCTGTGTGGTACAAGTCAGTATACCCTCTAATTGG
1 CACACGGGCGTGTGACTGGCTGTGTGGTA-AAGTCAGTATACCCTCCAATTGG
*
71410601 CACACGGGCGTGTGACTTGG-TCGTGTTGCGT-AAGTCAGTGTACCCTCCA
1 CACACGGGCGTGTGAC-TGGCT-GTG-TG-GTAAAGTCAGTATACCCTCCA
71410650 GTTTTCACAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
53 17 0.40
54 22 0.51
55 2 0.05
56 2 0.05
ACGTcount: A:0.19, C:0.25, G:0.30, T:0.26
Consensus pattern (52 bp):
CACACGGGCGTGTGACTGGCTGTGTGGTAAAGTCAGTATACCCTCCAATTGG
Found at i:71416180 original size:6 final size:6
Alignment explanation
Indices: 71416169--71416264 Score: 92
Period size: 6 Copynumber: 15.8 Consensus size: 6
71416159 AACCAAAATG
*
71416169 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
71416217 AGTAA-C AGAATC AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGAAT
1 AG-AATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAAT
71416265 GTGAATGCAA
Statistics
Matches: 75, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
5 6 0.08
6 62 0.83
7 5 0.07
8 2 0.03
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:71416196 original size:24 final size:24
Alignment explanation
Indices: 71416169--71416264 Score: 111
Period size: 30 Copynumber: 3.7 Consensus size: 24
71416159 AACCAAAATG
71416169 AGAATCAGAATCAGAATCAGTAAC
1 AGAATCAGAATCAGAATCAGTAAC
71416193 AGAATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAGAATC------AGTAAC
* *
71416223 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCA-GTAAC
71416248 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
71416265 GTGAATGCAA
Statistics
Matches: 63, Mismatches: 2, Indels: 13
0.81 0.03 0.17
Matches are distributed among these distances:
24 19 0.30
25 21 0.33
30 23 0.37
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (24 bp):
AGAATCAGAATCAGAATCAGTAAC
Found at i:71416221 original size:30 final size:30
Alignment explanation
Indices: 71416169--71416239 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
71416159 AACCAAAATG
71416169 AGAATCAGAATCAGAATCAGTAACAGAATC
1 AGAATCAGAATCAGAATCAGTAACAGAATC
*
71416199 AGAATCAGAATCA-ATATTAGTAACAGAATC
1 AGAATCAGAATCAGA-ATCAGTAACAGAATC
71416229 AGAATCAGAAT
1 AGAATCAGAAT
71416240 TAGGTGACAG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
29 1 0.03
30 38 0.97
ACGTcount: A:0.51, C:0.14, G:0.15, T:0.20
Consensus pattern (30 bp):
AGAATCAGAATCAGAATCAGTAACAGAATC
Found at i:71416430 original size:27 final size:26
Alignment explanation
Indices: 71416385--71416455 Score: 88
Period size: 27 Copynumber: 2.7 Consensus size: 26
71416375 ATGGCTGCCG
* * *
71416385 GAACAGATATCGTGACAGAGTCACCA
1 GAACAGATATTGTGGCAGAGCCACCA
71416411 GATACAGATATTGTGGCAGAGCCACCA
1 GA-ACAGATATTGTGGCAGAGCCACCA
*
71416438 GAATCAGATAATGTGGCA
1 GAA-CAGATATTGTGGCA
71416456 AACCCACCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
26 3 0.08
27 36 0.92
ACGTcount: A:0.37, C:0.20, G:0.25, T:0.18
Consensus pattern (26 bp):
GAACAGATATTGTGGCAGAGCCACCA
Found at i:71416462 original size:27 final size:27
Alignment explanation
Indices: 71416406--71416463 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
71416396 GTGACAGAGT
* * *
71416406 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
71416433 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
71416460 CACC
1 CACC
71416464 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:71416668 original size:22 final size:22
Alignment explanation
Indices: 71416620--71416678 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
71416610 GTAAATACGT
*
71416620 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
71416642 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
71416664 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
71416679 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:71416805 original size:27 final size:26
Alignment explanation
Indices: 71416766--71416848 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
71416756 TCGATCGGTC
* *
71416766 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
71416792 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
71416819 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
71416846 AAC
1 AAC
71416849 GCTTCCTCCG
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:71417096 original size:27 final size:27
Alignment explanation
Indices: 71417047--71417234 Score: 214
Period size: 27 Copynumber: 7.0 Consensus size: 27
71417037 GGGGCAAAAT
* * * *
71417047 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
71417074 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
71417101 GGTATTTCTACCCTACAAGGATATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
71417128 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
71417155 GGTAATTCTACCCTATAAGGGCATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
71417182 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
71417209 GATAATTCTACCCTACAAGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
71417235 TAGTAATTTC
Statistics
Matches: 132, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 132 1.00
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:71417191 original size:81 final size:81
Alignment explanation
Indices: 71417049--71417234 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
71417039 GGCAAAATGG
* * * * * * * *
71417049 TAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTATAGGGGTATTTCGGTATTTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGCATTTCAGTAATTCTACCC
71417114 TACAAGGATATTTCGA
66 TACAAGGATATTTCGA
** *
71417130 TAATTCTACCCTACGGGGGTATTTCGGTAATTCTACCCTATAAGGGCATTTTAGTAATTCTACCC
1 TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGCATTTCAGTAATTCTACCC
* * *
71417195 TATAGGGGTATTTCGA
66 TACAAGGATATTTCGA
71417211 TAATTCTACCCTACAAGGGTATTT
1 TAATTCTACCCTACAAGGGTATTT
71417235 TAGTAATTTC
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 89 1.00
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAAGGGCATTTCAGTAATTCTACCC
TACAAGGATATTTCGA
Found at i:71417235 original size:54 final size:54
Alignment explanation
Indices: 71417047--71417242 Score: 250
Period size: 54 Copynumber: 3.6 Consensus size: 54
71417037 GGGGCAAAAT
* * * * **
71417047 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
* * * **
71417101 GGTATTTCTACCCTACAAGGATA-TTTCGATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAG-TAATTCTACCCTATAGGGGTATTTC
* *
71417155 GGTAATTCTACCCTATAAGGGCATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
*
71417209 GATAATTCTACCCTACAAGGGTATTTTAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATT
71417243 TCACAATTGA
Statistics
Matches: 120, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.02
54 114 0.95
55 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
Found at i:71417284 original size:27 final size:27
Alignment explanation
Indices: 71417251--71417400 Score: 203
Period size: 27 Copynumber: 5.6 Consensus size: 27
71417241 TTTCACAATT
71417251 GAGGGTAAAACAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
* * *
71417278 GAGGGTAAAAC-GATAATTTTGTAAACC
1 GAGGGTAAAACAG-TAATTCTATAAATC
* *
71417305 GAGGGTAAACCAGTAATCCTATAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
* * *
71417332 GAGGGTAAAACGGTAATTTTAAAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
*
71417359 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
71417386 GAGGGTAAAACAGTA
1 GAGGGTAAAACAGTA
71417401 TGTGACACCC
Statistics
Matches: 104, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 102 0.98
28 1 0.01
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTCTATAAATC
Found at i:71417327 original size:54 final size:54
Alignment explanation
Indices: 71417251--71417396 Score: 229
Period size: 54 Copynumber: 2.7 Consensus size: 54
71417241 TTTCACAATT
**
71417251 GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACC
1 GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTAAAAACC
* * * *
71417305 GAGGGTAAACCAGTAATCCTATAAATCGAGGGTAAAACGGTAATTTTAAAAATC
1 GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTAAAAACC
*
71417359 GAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC
71417397 AGTATGTGAC
Statistics
Matches: 83, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (54 bp):
GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAACGATAATTTTAAAAACC
Found at i:71417361 original size:81 final size:81
Alignment explanation
Indices: 71417251--71417400 Score: 230
Period size: 81 Copynumber: 1.9 Consensus size: 81
71417241 TTTCACAATT
* * *
71417251 GAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAAC-GATAATTTTGTAAACCGAGGGTAAAC
1 GAGGGTAAAACAGTAATTCTAAAAATCGAGGGTAAAACAG-TAATTCTGTAAACCGAGGGTAAAA
71417315 CAGTAATCCTATAAATC
65 CAGTAATCCTATAAATC
* * *
71417332 GAGGGTAAAACGGTAATTTTAAAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAAC
1 GAGGGTAAAACAGTAATTCTAAAAATCGAGGGTAAAACAGTAATTCTGTAAACCGAGGGTAAAAC
71417397 AGTA
66 AGTA
71417401 TGTGACACCC
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
81 61 0.98
82 1 0.02
ACGTcount: A:0.43, C:0.11, G:0.22, T:0.24
Consensus pattern (81 bp):
GAGGGTAAAACAGTAATTCTAAAAATCGAGGGTAAAACAGTAATTCTGTAAACCGAGGGTAAAAC
AGTAATCCTATAAATC
Found at i:71419361 original size:47 final size:47
Alignment explanation
Indices: 71419303--71419462 Score: 248
Period size: 47 Copynumber: 3.4 Consensus size: 47
71419293 CAGCCAAGAC
71419303 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
71419350 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
71419397 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
71419444 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
71419463 TCCCGAAGGG
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 103 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:71419639 original size:37 final size:37
Alignment explanation
Indices: 71419581--71419659 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
71419571 CCGAGCTCTA
* * *
71419581 AAGACCCGATGACTACATGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
* * *
71419618 AAGACCCGATAACTTCGTGTGGAGATTATGTTCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
71419655 AAGAC
1 AAGAC
71419660 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:71421171 original size:54 final size:54
Alignment explanation
Indices: 71421084--71421345 Score: 416
Period size: 54 Copynumber: 4.9 Consensus size: 54
71421074 GGTGTTACAC
* *
71421084 AGTAATTCTGTAAACTGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
* *
71421138 GGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
* ** * *
71421192 AGTAATTTTACAAATTGAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
*
71421246 AGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
* *
71421300 GGTAATTCTGTAAACTGAGGGTAAAACAGTAATTCTGTAAATCGAG
1 AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAG
71421346 AGTACTTTGG
Statistics
Matches: 188, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 188 1.00
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (54 bp):
AGTAATTCTGTAAACTGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAAT
Found at i:71421360 original size:27 final size:27
Alignment explanation
Indices: 71421085--71421345 Score: 341
Period size: 27 Copynumber: 9.7 Consensus size: 27
71421075 GTGTTACACA
71421085 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
*
71421112 ATAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
71421139 GTAATTCTGTAAA-CTGAGGGTAAAACG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
**
71421166 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTGTAAATCGAGGGTAAAATG
* ** * *
71421193 GTAATTTTACAAATTGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
71421220 ATAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
71421247 GTAATTCTGTAAA-CTGAGGGTAAAATG
1 GTAATTCTGTAAATC-GAGGGTAAAATG
71421274 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
**
71421301 GTAATTCTGTAAA-CTGAGGGTAAAACA
1 GTAATTCTGTAAATC-GAGGGTAAAATG
71421328 GTAATTCTGTAAATCGAG
1 GTAATTCTGTAAATCGAG
71421346 AGTACTTTGG
Statistics
Matches: 207, Mismatches: 20, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
26 3 0.01
27 200 0.97
28 4 0.02
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:71421360 original size:81 final size:81
Alignment explanation
Indices: 71421082--71421340 Score: 387
Period size: 81 Copynumber: 3.2 Consensus size: 81
71421072 GGGGTGTTAC
*
71421082 ACAGTAATTCTGTAAACTGAGGGTAAAATGATAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
1 ACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
71421147 GTAAACTGAGGGTAAA
66 GTAAACTGAGGGTAAA
* ** * ** * * *
71421163 ACGGTAATTCTGTAAA-TCGAGGGTAAAACAGTAATTTTACAAATTGAGGGTAAAACGATAATTC
1 ACAGTAATTCTGTAAACT-GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTC
71421227 TGTAAA-TCGAGGGTAAA
65 TGTAAACT-GAGGGTAAA
*
71421244 ATAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
1 ACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
71421309 GTAAACTGAGGGTAAA
66 GTAAACTGAGGGTAAA
71421325 ACAGTAATTCTGTAAA
1 ACAGTAATTCTGTAAA
71421341 TCGAGAGTAC
Statistics
Matches: 153, Mismatches: 21, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.01
81 149 0.97
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.29
Consensus pattern (81 bp):
ACAGTAATTCTGTAAACTGAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCT
GTAAACTGAGGGTAAA
Found at i:71421372 original size:81 final size:80
Alignment explanation
Indices: 71421082--71421374 Score: 362
Period size: 81 Copynumber: 3.6 Consensus size: 80
71421072 GGGGTGTTAC
*
71421082 ACAGTAATTCTGTAAA-CTGAGGGTAAAATGATAATTCTGTA-AATCGAGGGTAAAATGGTAATT
1 ACAGTAATTCTGTAAATC-GAGGGTAAAATGGTAATT-T-TACAATCGAGGGTAAAATGGTAATT
71421145 CTGTAAACTGAGGGTAAA
63 CTGTAAACTGAGGGTAAA
* ** * * *
71421163 ACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTACAAATTGAGGGTAAAACGATAATTCT
1 ACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTAC-AATCGAGGGTAAAATGGTAATTCT
71421228 GTAAA-TCGAGGGTAAA
65 GTAAACT-GAGGGTAAA
*
71421244 ATAGTAATTCTGTAAA-CTGAGGGTAAAATGGTAATTCTGTA-AATCGAGGGTAAAATGGTAATT
1 ACAGTAATTCTGTAAATC-GAGGGTAAAATGGTAATT-T-TACAATCGAGGGTAAAATGGTAATT
71421307 CTGTAAACTGAGGGTAAA
63 CTGTAAACTGAGGGTAAA
* ***
71421325 ACAGTAATTCTGTAAATCGAGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 ACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAA-TCGAGGG
71421375 CATTTCAGTA
Statistics
Matches: 182, Mismatches: 19, Indels: 22
0.82 0.09 0.10
Matches are distributed among these distances:
79 4 0.02
80 6 0.03
81 166 0.91
82 4 0.02
83 2 0.01
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (80 bp):
ACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTTTACAATCGAGGGTAAAATGGTAATTCTG
TAAACTGAGGGTAAA
Found at i:71426886 original size:45 final size:45
Alignment explanation
Indices: 71426830--71426930 Score: 141
Period size: 45 Copynumber: 2.2 Consensus size: 45
71426820 GCAGTAATAT
*
71426830 TAACAGTAACAGTATTCAACACACAAAGTGCTGAATCT-GTAACAG
1 TAACGGTAACAGTATTCAACACACAAAGTGCTGAAT-TGGTAACAG
* * * *
71426875 TAATGGTAACAGTATTCGACACACAAAGTGTTGAATTGGTAATAG
1 TAACGGTAACAGTATTCAACACACAAAGTGCTGAATTGGTAACAG
71426920 TAACGGTAACA
1 TAACGGTAACA
71426931 ATAACAGTAG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
44 1 0.02
45 48 0.98
ACGTcount: A:0.41, C:0.16, G:0.19, T:0.25
Consensus pattern (45 bp):
TAACGGTAACAGTATTCAACACACAAAGTGCTGAATTGGTAACAG
Found at i:71427190 original size:40 final size:40
Alignment explanation
Indices: 71427141--71427226 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
71427131 ATTTGTTTCA
* * **
71427141 TCAGAAATTTTACAGTTCAATGCAGTATACGTAACAATAT
1 TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
* * *
71427181 TCAGTAATTTCACAGTTCAATTCGGTATTCAAAACAATAT
1 TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
71427221 TCAGTA
1 TCAGTA
71427227 TCCCATAATT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (40 bp):
TCAGTAATTTCACAGTTCAATGCAGTATACAAAACAATAT
Found at i:71427956 original size:12 final size:12
Alignment explanation
Indices: 71427928--71427970 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
71427918 TCTAGTTTTT
71427928 CCTTTTTCTTT-
1 CCTTTTTCTTTC
*
71427939 TC-TTTTCTTTC
1 CCTTTTTCTTTC
71427950 CCTTTTTCTTTC
1 CCTTTTTCTTTC
*
71427962 TCTTTTTCT
1 CCTTTTTCT
71427971 CCCCTGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 8 0.30
11 2 0.07
12 17 0.63
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CCTTTTTCTTTC
Found at i:71427973 original size:22 final size:22
Alignment explanation
Indices: 71427928--71427973 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
71427918 TCTAGTTTTT
*
71427928 CCTTTTTCTTTTCTTTTCTTTC
1 CCTTTTTCTTTTCTTTTCTCTC
71427950 CCTTTTTCTTTCTCTTTT-TCTC
1 CCTTTTTCTTT-TCTTTTCTCTC
71427972 CC
1 CC
71427974 CTGTTTTCGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (22 bp):
CCTTTTTCTTTTCTTTTCTCTC
Found at i:71427975 original size:23 final size:22
Alignment explanation
Indices: 71427928--71427981 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
71427918 TCTAGTTTTT
*
71427928 CCTTTTTCTTTTCTTTTCTTTC
1 CCTTTTTCTTTTCTTTTCTTCC
71427950 CCTTTTTCTTTCTCTTTT-TCTCC
1 CCTTTTTCTTT-TCTTTTCT-TCC
71427973 CCTGTTTTC
1 CCT-TTTTC
71427982 GAATGCTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 12 0.43
23 11 0.39
24 5 0.18
ACGTcount: A:0.00, C:0.31, G:0.02, T:0.67
Consensus pattern (22 bp):
CCTTTTTCTTTTCTTTTCTTCC
Found at i:71428532 original size:19 final size:20
Alignment explanation
Indices: 71428500--71428543 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
71428490 ATATAAAACC
71428500 ATAA-CAATTAATAAT-TAT
1 ATAATCAATTAATAATATAT
71428518 AATAATCAATT-ATAATATAT
1 -ATAATCAATTAATAATATAT
71428538 ATAATC
1 ATAATC
71428544 TAAATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATCAATTAATAATATAT
Found at i:71437716 original size:40 final size:40
Alignment explanation
Indices: 71437667--71437749 Score: 112
Period size: 40 Copynumber: 2.1 Consensus size: 40
71437657 ATTCATTTCA
* *
71437667 TCAGAAATTTTACAGTTCAATGCAGTATACATAACAATAT
1 TCAGAAATTTCACAGTTCAATGCAGTATACAAAACAATAT
* * * *
71437707 TCAGTAATTTCACAGTTCAATTCGGTATTCAAAACAATAT
1 TCAGAAATTTCACAGTTCAATGCAGTATACAAAACAATAT
71437747 TCA
1 TCA
71437750 TTATCCCATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.34
Consensus pattern (40 bp):
TCAGAAATTTCACAGTTCAATGCAGTATACAAAACAATAT
Found at i:71438476 original size:17 final size:18
Alignment explanation
Indices: 71438454--71438487 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
71438444 TCTAGTTTTT
71438454 CCTTTTTCTTT-TCTTTC
1 CCTTTTTCTTTCTCTTTC
71438471 CCTTTTTCTTTCTCTTT
1 CCTTTTTCTTTCTCTTT
71438488 TTCTCCCCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
CCTTTTTCTTTCTCTTTC
Found at i:71438477 original size:12 final size:12
Alignment explanation
Indices: 71438462--71438491 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
71438452 TTCCTTTTTC
71438462 TTTTCTTTCCCT
1 TTTTCTTTCCCT
*
71438474 TTTTCTTTCTCT
1 TTTTCTTTCCCT
71438486 TTTTCT
1 TTTTCT
71438492 CCCCTGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (12 bp):
TTTTCTTTCCCT
Found at i:71442163 original size:20 final size:20
Alignment explanation
Indices: 71442138--71442176 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
71442128 AAAATTTCAA
71442138 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
71442158 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
71442177 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:71443559 original size:13 final size:13
Alignment explanation
Indices: 71443541--71443565 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71443531 ACTCTCTGAC
71443541 TTAGGTCACACGG
1 TTAGGTCACACGG
71443554 TTAGGTCACACG
1 TTAGGTCACACG
71443566 CCTGTGTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (13 bp):
TTAGGTCACACGG
Found at i:71444221 original size:2 final size:2
Alignment explanation
Indices: 71444214--71444245 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
71444204 TTAATTTACC
*
71444214 AT AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71444246 CAAGATGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:71447846 original size:31 final size:31
Alignment explanation
Indices: 71447808--71447875 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
71447798 GCTTTTCACG
71447808 TGAAAGGTTTAAACTCATGATGTCAAAAATA
1 TGAAAGGTTTAAACTCATGATGTCAAAAATA
71447839 TGAAAGGTTTAAACTCATGATGTCAAAAATA
1 TGAAAGGTTTAAACTCATGATGTCAAAAATA
*
71447870 TAAAAG
1 TGAAAG
71447876 TGCCATATTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.28
Consensus pattern (31 bp):
TGAAAGGTTTAAACTCATGATGTCAAAAATA
Found at i:71456875 original size:20 final size:20
Alignment explanation
Indices: 71456838--71456873 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
71456828 ATAATTTAGC
71456838 TTAATT-AACCTTTATTTAA
1 TTAATTAAACCTTTATTTAA
71456857 TTAATTAAACC-TTATTT
1 TTAATTAAACCTTTATTT
71456874 TAGTTAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATTAAACCTTTATTTAA
Found at i:71456880 original size:20 final size:20
Alignment explanation
Indices: 71456831--71456885 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
71456821 TTAAATTATA
71456831 ATTTAGCTTAATT-AACCTTT
1 ATTTAG-TTAATTAAACCTTT
*
71456851 ATTTAATTAATTAAACC-TT
1 ATTTAGTTAATTAAACCTTT
71456870 ATTTTAGTTAAGTTAA
1 A-TTTAGTTAA-TTAA
71456886 TGGGCCTCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 9 0.30
20 17 0.57
21 4 0.13
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.49
Consensus pattern (20 bp):
ATTTAGTTAATTAAACCTTT
Found at i:71466572 original size:25 final size:23
Alignment explanation
Indices: 71466527--71466585 Score: 57
Period size: 25 Copynumber: 2.4 Consensus size: 23
71466517 CACTACCGAT
71466527 CAGGATGCTCACAAGAACTATTTAA
1 CAGGATGCTCACAAGAACTA--TAA
**
71466552 CAGGATGCTCGA-AAGGGCTATAA
1 CAGGATGCTC-ACAAGAACTATAA
71466575 CAGGATTGCTC
1 CAGGA-TGCTC
71466586 TTCCGAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
23 8 0.27
24 5 0.17
25 16 0.53
26 1 0.03
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (23 bp):
CAGGATGCTCACAAGAACTATAA
Found at i:71473327 original size:21 final size:20
Alignment explanation
Indices: 71473290--71473332 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
71473280 TTACTCCAAG
71473290 GAAGCCGATTGATCCATCTAA
1 GAAGCCGATTGATCCATC-AA
*
71473311 GAAGCCGGATTTA-CCATCAA
1 GAAGCC-GATTGATCCATCAA
71473331 GA
1 GA
71473333 CTGAAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (20 bp):
GAAGCCGATTGATCCATCAA
Found at i:71477975 original size:121 final size:121
Alignment explanation
Indices: 71477753--71477977 Score: 362
Period size: 121 Copynumber: 1.9 Consensus size: 121
71477743 TGCTCATTAT
* * *
71477753 TCTATCATTTAATTTGTATTCTTAGGTTAGTTATCATACTTTTCATGTTAAATCAAGTTCTTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTTCATGTTAAATCAAGTTATTAGG
* *
71477818 AAAATCTCATACCCATGACATTACTATGCTCATCTCATGCTATTACCATGCCAATG
66 AAAACCCCATACCCATGACATTACTATGCTCATCTCATGCTATTACCATGCCAATG
* *
71477874 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTTCGTGTTAAAT-GAGTTATTAGG
1 TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTTCATGTTAAATCAAGTTATTAGG
*
71477938 AAAACCCCATACCCATGACATTACTATTCTCATTCTCATG
66 AAAACCCCATACCCATGACATTACTATGCTCA-TCTCATG
71477978 ATTCTTTTGG
Statistics
Matches: 95, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
120 38 0.40
121 57 0.60
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (121 bp):
TCTATCATTTAATTTGCATTCTTAGGTTAGTTATCATACATTTCATGTTAAATCAAGTTATTAGG
AAAACCCCATACCCATGACATTACTATGCTCATCTCATGCTATTACCATGCCAATG
Found at i:71486912 original size:22 final size:21
Alignment explanation
Indices: 71486883--71486925 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
71486873 ATTGAGTCTA
71486883 TTTATTTTGATGT-TTATTTTT
1 TTTATTTTGAT-TCTTATTTTT
*
71486904 TTTAGTTTTTATTCTTATTTTT
1 TTTA-TTTTGATTCTTATTTTT
71486926 CTATTTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.14, C:0.02, G:0.07, T:0.77
Consensus pattern (21 bp):
TTTATTTTGATTCTTATTTTT
Found at i:71497051 original size:46 final size:49
Alignment explanation
Indices: 71496803--71497168 Score: 264
Period size: 46 Copynumber: 7.7 Consensus size: 49
71496793 GGTAGAATGT
* * * *
71496803 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTC-ATATCTC-AAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGC
* * * * * * **
71496850 CGTTGCCATGCCCCAGATATGGTCTTACATTGACTAT-TGTCATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATC-TCGAGGC
* * * * * *
71496899 CGACGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTTG-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACAT-CTCGAGGC
* * *
71496949 CGATGCCATGTCCCAAACATGGTCTTACACT-G-AC-ACATCTC-ATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGA-GGC
* * *
71496995 CGAT-ACATGTCCTAGACAT-GTCTTACACTGGCT-TACGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGC
* * * *
71497041 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGC
* * * *
71497087 CGATGTCATGTCCCAGACATGGTGTTACACTGGCTCT-CATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGAGGC
*
71497135 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC
71497169 ACAATAACCC
Statistics
Matches: 252, Mismatches: 50, Indels: 35
0.75 0.15 0.10
Matches are distributed among these distances:
44 10 0.04
45 14 0.06
46 75 0.30
47 62 0.25
48 26 0.10
49 32 0.13
50 30 0.12
51 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAGGC
Found at i:71497138 original size:94 final size:93
Alignment explanation
Indices: 71496905--71497171 Score: 303
Period size: 94 Copynumber: 2.8 Consensus size: 93
71496895 AGGCCGACGC
* * * *
71496905 CATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTTGTGCCGATGCCATGTCCCAAACATG
1 CATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATGTG-GCCGATG-CATGTCCCAGACAT-
*
71496970 GTCTTACACT-G-ACACATCTCATAGCCGATA
62 GTCTTACACTAGCTCACATCTCATAGCCGATA
* * *
71497000 CATGTCCTAGACAT-GTCTTACACTGGCT-TACGT-CTCGAGGCCGATGCATGTCCCAGACATGT
1 CATGTCCTAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCCAGACATGT
* * *
71497062 CTTACACTAGCTCTCGTCTCA-ATGCCGATGT
64 CTTACACTAGCTCACATCTCATA-GCCGAT-A
* *
71497093 CATGTCCCAGACATGGTGTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCT
1 CATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCT
71497158 TACACTAGCTCACA
66 TACACTAGCTCACA
71497172 ATAACCCATA
Statistics
Matches: 145, Mismatches: 18, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
90 10 0.07
91 15 0.10
92 21 0.14
93 15 0.10
94 68 0.47
95 16 0.11
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (93 bp):
CATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATGTCT
TACACTAGCTCACATCTCATAGCCGATA
Found at i:71497158 original size:140 final size:141
Alignment explanation
Indices: 71496798--71497163 Score: 348
Period size: 140 Copynumber: 2.6 Consensus size: 141
71496788 CATGGGGTAG
* * * * * * * *
71496798 AATGTCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCATATCTCA-AGTCGTTGCCATGCC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCTAATAGCCGAT-ACATGTC
* * * * *
71496862 CCAGATATGGTCTTACATTGAC-TATTGTCATCGAGGCCGACGCCATGTCCTAGACATGGTCTTA
63 CCAGACAT-GTCTTACACTGGCTTA-CGTC-TCGAGGCCGACGCCATGTCCCAGACATGGTCTTA
*
71496926 CACTAGCTCTCACATATT
125 CACTAGCTCT-ACATATC
** * *
71496944 TGTGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCATAGCCGATACATGTCCTA
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTAATAGCCGATACATGTCCCA
*
71497009 GACATGTCTTACACTGGCTTACGTCTCGAGGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG
66 GACATGTCTTACACTGGCTTACGTCTCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
* *
71497072 CTCT-CGTCTC
131 CTCTACATATC
* * * * * * *
71497082 AATGCCGATGTCATGTCCCAGACATGGTGTTACACTGGCTC-TCATAATGTGGCCGATGCATGTC
1 AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATC-TAA--TAGCCGATACATGTC
71497146 CCAGACATGTCTTACACT
63 CCAGACATGTCTTACACT
71497164 AGCTCACAAT
Statistics
Matches: 185, Mismatches: 30, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
137 2 0.01
138 39 0.21
140 46 0.25
141 13 0.07
142 11 0.06
143 14 0.08
144 21 0.11
145 6 0.03
146 33 0.18
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
AATGCCGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTAATAGCCGATACATGTCCCA
GACATGTCTTACACTGGCTTACGTCTCGAGGCCGACGCCATGTCCCAGACATGGTCTTACACTAG
CTCTACATATC
Found at i:71497856 original size:13 final size:13
Alignment explanation
Indices: 71497838--71497862 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71497828 TAAAAGTAAA
71497838 AAAAATCATCAAG
1 AAAAATCATCAAG
71497851 AAAAATCATCAA
1 AAAAATCATCAA
71497863 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:71500615 original size:21 final size:21
Alignment explanation
Indices: 71500581--71500620 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
71500571 AATGATCATG
*
71500581 GATGATTTAAGAGTGACTTAA
1 GATGATTTAAGAGTCACTTAA
**
71500602 GATGATTTGCGAGTCACTT
1 GATGATTTAAGAGTCACTT
71500621 GTGTTTAGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (21 bp):
GATGATTTAAGAGTCACTTAA
Found at i:71501133 original size:28 final size:28
Alignment explanation
Indices: 71501100--71501173 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
71501090 AATGCATGAC
71501100 TATGAATGTGATTGGGCCCAATGGGCCA
1 TATGAATGTGATTGGGCCCAATGGGCCA
* * *
71501128 TATGAATGTGATTGGGCTCGATGGGTCA
1 TATGAATGTGATTGGGCCCAATGGGCCA
*
71501156 TATGAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
71501174 TAAAGGGGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.24, C:0.14, G:0.34, T:0.28
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCCAATGGGCCA
Found at i:71503486 original size:23 final size:23
Alignment explanation
Indices: 71503456--71503501 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
71503446 TATCGAGTTG
71503456 AACAGTAAACTCCAATGAGCTGA
1 AACAGTAAACTCCAATGAGCTGA
* **
71503479 AACAGTAAGCTCTTATGAGCTGA
1 AACAGTAAACTCCAATGAGCTGA
71503502 TATATCGATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (23 bp):
AACAGTAAACTCCAATGAGCTGA
Found at i:71504946 original size:61 final size:59
Alignment explanation
Indices: 71504877--71504992 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 59
71504867 AATATTTATA
* * *
71504877 TTAATATTAAATTTAAT-TCAATGTTTATCTATAAGATAAA-ATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCT-AATATTTATCT-T--GATAAATATTATATTAATTTAATAAGAT
71504938 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATA
71504993 TTAAATTAAT
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
58 6 0.12
59 15 0.30
60 1 0.02
61 27 0.54
62 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:71507198 original size:19 final size:20
Alignment explanation
Indices: 71507174--71507218 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
71507164 ATTTTTTTCA
71507174 TATTTTAAAAAT-TATCTTT
1 TATTTTAAAAATATATCTTT
*
71507193 TATTTTTAAAAATATATTTTT
1 TA-TTTTAAAAATATATCTTT
71507214 TATTT
1 TATTT
71507219 CTCAAGATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 2 0.09
20 13 0.57
21 8 0.35
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TATTTTAAAAATATATCTTT
Found at i:71507214 original size:21 final size:20
Alignment explanation
Indices: 71507156--71507218 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 20
71507146 GCATTACTAA
71507156 TAAAAATTATTTTTTTCATATTT
1 TAAAAATTA-TTTTTT-AT-TTT
*
71507179 TAAAAATTATCTTTTATTTT
1 TAAAAATTATTTTTTATTTT
71507199 TAAAAATATATTTTTTATTT
1 TAAAAAT-TATTTTTTATTT
71507219 CTCAAGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.27
21 13 0.35
22 5 0.14
23 9 0.24
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (20 bp):
TAAAAATTATTTTTTATTTT
Found at i:71507483 original size:18 final size:18
Alignment explanation
Indices: 71507460--71507496 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
71507450 AGCTGACTTC
71507460 TTTTCTCGCCATTTATGT
1 TTTTCTCGCCATTTATGT
*
71507478 TTTTCTTGCCATTTATGT
1 TTTTCTCGCCATTTATGT
71507496 T
1 T
71507497 ATACAAGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.19, G:0.11, T:0.59
Consensus pattern (18 bp):
TTTTCTCGCCATTTATGT
Found at i:71508075 original size:32 final size:32
Alignment explanation
Indices: 71508034--71508098 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
71508024 ATACTAATAG
71508034 ATACCCAAACCAAAATTTCAGGAAGCAATCAT
1 ATACCCAAACCAAAATTTCAGGAAGCAATCAT
71508066 ATACCCAAACCAAAATTTCAGGAAGCAATCAT
1 ATACCCAAACCAAAATTTCAGGAAGCAATCAT
71508098 A
1 A
71508099 AAAAAACTAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.48, C:0.25, G:0.09, T:0.18
Consensus pattern (32 bp):
ATACCCAAACCAAAATTTCAGGAAGCAATCAT
Found at i:71512245 original size:13 final size:12
Alignment explanation
Indices: 71512202--71512249 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 12
71512192 ATTTAGATAA
*
71512202 TATACAAT-TAA
1 TATACAATATAT
71512213 TATA-AATATA-
1 TATACAATATAT
71512223 -ATACAATATAT
1 TATACAATATAT
71512234 TATACAAATATAT
1 TATAC-AATATAT
71512247 TAT
1 TAT
71512250 TTATAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
9 3 0.09
10 9 0.28
11 6 0.19
12 4 0.12
13 10 0.31
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (12 bp):
TATACAATATAT
Found at i:71516547 original size:55 final size:57
Alignment explanation
Indices: 71516481--71516593 Score: 194
Period size: 57 Copynumber: 2.0 Consensus size: 57
71516471 ACTCAATTAG
*
71516481 GGGTCCAATACAATTAGTCATTGCA-AT-TATTTTAATTTTACAATTAAATTTATTT
1 GGGTCCAATACAATTAGTCATTGCAGATATATTTTAATTCTACAATTAAATTTATTT
*
71516536 GGGTCCAATACAATTAGTCATTGCAGTTATATTTTAATTCTACAATTAAATTTATTT
1 GGGTCCAATACAATTAGTCATTGCAGATATATTTTAATTCTACAATTAAATTTATTT
71516593 G
1 G
71516594 CACATAGAAT
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
55 25 0.46
56 1 0.02
57 28 0.52
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.44
Consensus pattern (57 bp):
GGGTCCAATACAATTAGTCATTGCAGATATATTTTAATTCTACAATTAAATTTATTT
Found at i:71526301 original size:5 final size:5
Alignment explanation
Indices: 71526291--71526340 Score: 59
Period size: 5 Copynumber: 10.0 Consensus size: 5
71526281 AAGCTAAATT
*
71526291 AATAA AATAAA AATAAA AATAA AA-AT AA-AA AATAA AATAA AATAA AATAA
1 AATAA AAT-AA AAT-AA AATAA AATAA AATAA AATAA AATAA AATAA AATAA
71526341 TATCTTCTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
4 6 0.15
5 24 0.59
6 11 0.27
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:71526303 original size:6 final size:6
Alignment explanation
Indices: 71526294--71526337 Score: 65
Period size: 6 Copynumber: 7.5 Consensus size: 6
71526284 CTAAATTAAT
71526294 AAAATA AAAATA AAAATA AAAATA AAAA-A TAAAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA -AAAATA AAAATA AAA
71526338 TAATATCTTC
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 6 0.17
6 29 0.83
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:71526342 original size:18 final size:17
Alignment explanation
Indices: 71526291--71526342 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 17
71526281 AAGCTAAATT
71526291 AATAAAAT-AAAAATAAA
1 AATAAAATAAAAAAT-AA
71526308 AATAAAAATAAAAAATAA
1 AAT-AAAATAAAAAATAA
71526326 AATAAAATAAAATAATA
1 AATAAAATAAAA-AATA
71526343 TCTTCTAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 12 0.38
18 14 0.44
19 6 0.19
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (17 bp):
AATAAAATAAAAAATAA
Found at i:71533944 original size:15 final size:15
Alignment explanation
Indices: 71533926--71533964 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
71533916 TCCAAGATTG
71533926 AGAAACCCAGAATAA
1 AGAAACCCAGAATAA
* *
71533941 AGAAATCTAGAATAA
1 AGAAACCCAGAATAA
71533956 AGAAACCCA
1 AGAAACCCA
71533965 ATATATGATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.59, C:0.18, G:0.13, T:0.10
Consensus pattern (15 bp):
AGAAACCCAGAATAA
Found at i:71544929 original size:34 final size:34
Alignment explanation
Indices: 71544890--71545000 Score: 159
Period size: 34 Copynumber: 3.3 Consensus size: 34
71544880 ATAAATGTAT
* *
71544890 ATATATATTCACCTTCGATTATATCAAACCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* * *
71544924 ATATATATTCACTTTCGGTTATACCAAGCTATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
* *
71544958 ATATATAATCACCTTCGATTATGCCAAGCCATAC
1 ATATATATTCACCTTCGATTATACCAAGCCATAC
71544992 ATATATATT
1 ATATATATT
71545001 TATTTACTTC
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.36, C:0.22, G:0.06, T:0.36
Consensus pattern (34 bp):
ATATATATTCACCTTCGATTATACCAAGCCATAC
Found at i:71553781 original size:12 final size:12
Alignment explanation
Indices: 71553740--71553782 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
71553730 TAAATAATTA
*
71553740 AAATTACTAAGAT
1 AAATTATTAA-AT
*
71553753 AAATAATTAAAT
1 AAATTATTAAAT
*
71553765 AAATTATTAATT
1 AAATTATTAAAT
71553777 AAATTA
1 AAATTA
71553783 GGATTTGCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
12 18 0.69
13 8 0.31
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (12 bp):
AAATTATTAAAT
Found at i:71554506 original size:14 final size:14
Alignment explanation
Indices: 71554489--71554515 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71554479 AATATTTTTC
71554489 GGAAAATGATTTAT
1 GGAAAATGATTTAT
71554503 GGAAAATGATTTA
1 GGAAAATGATTTA
71554516 CTTTTCTGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (14 bp):
GGAAAATGATTTAT
Found at i:71554647 original size:20 final size:20
Alignment explanation
Indices: 71554624--71554680 Score: 93
Period size: 17 Copynumber: 3.0 Consensus size: 20
71554614 CTATTTTTAC
71554624 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
71554644 ATATATTAATAAA--T-TAT
1 ATATATTAATAAATTTATAT
71554661 ATATATTAATAAATTTATAT
1 ATATATTAATAAATTTATAT
71554681 TTTAAATTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
17 16 0.47
18 1 0.03
19 1 0.03
20 16 0.47
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATATTAATAAATTTATAT
Found at i:71554699 original size:28 final size:28
Alignment explanation
Indices: 71554666--71554722 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
71554656 ATTATATATA
*
71554666 TTAATAAATTTATATTTTAAATTGTTTT
1 TTAATAAATTTATACTTTAAATTGTTTT
71554694 TTAATAAATTTATACTTTAAATTGTTTT
1 TTAATAAATTTATACTTTAAATTGTTTT
71554722 T
1 T
71554723 ACATATATTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (28 bp):
TTAATAAATTTATACTTTAAATTGTTTT
Found at i:71555997 original size:21 final size:21
Alignment explanation
Indices: 71555973--71556014 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
71555963 TCAATATCAT
71555973 TATCCAACCA-AATAAATTCAA
1 TATCCAA-CATAATAAATTCAA
*
71555994 TATCTAACATAATAAATTCAA
1 TATCCAACATAATAAATTCAA
71556015 CAAGCTTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (21 bp):
TATCCAACATAATAAATTCAA
Found at i:71556048 original size:21 final size:21
Alignment explanation
Indices: 71555983--71556048 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
71555973 TATCCAACCA
71555983 AATAAATTCAATATCTAACAT
1 AATAAATTCAATATCTAACAT
* *
71556004 AATAAATTCAACAAGCTTAAAACAT
1 AATAAATTCAA-TATC-T--AACAT
*
71556029 AATAAATTTAATATCTAACA
1 AATAAATTCAATATCTAACA
71556049 AATTCAAGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
21 15 0.42
22 2 0.06
23 2 0.06
24 2 0.06
25 15 0.42
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.30
Consensus pattern (21 bp):
AATAAATTCAATATCTAACAT
Found at i:71557396 original size:28 final size:28
Alignment explanation
Indices: 71557348--71557438 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
71557338 GTGACAGAGT
*
71557348 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
71557377 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
71557405 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
71557433 CACCAG
1 CACCAG
71557439 GACGCTTCCT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
28 51 0.88
29 7 0.12
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:71557591 original size:28 final size:28
Alignment explanation
Indices: 71557544--71557608 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
71557534 AAATTAACCT
* *
71557544 TAGGGGTATAAAGGTCATTTAGCATACG
1 TAGGGGTATAAAGGTAATTTAGCATACA
* *
71557572 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTAGCATACA
71557600 TAGGGGTAT
1 TAGGGGTAT
71557609 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTAGCATACA
Found at i:71565284 original size:28 final size:29
Alignment explanation
Indices: 71565211--71565298 Score: 94
Period size: 28 Copynumber: 3.1 Consensus size: 29
71565201 AGCATGGCTG
* * * *
71565211 CCAGATACAGA-AA-ATGTGACAAAGTCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
*
71565238 CCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAATTTGTGGCA-TAGCCA
71565267 CCAGA-ACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAATTTGTGGCATAGCCA
71565295 CCAG
1 CCAG
71565299 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
27 12 0.24
28 25 0.49
29 14 0.27
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (29 bp):
CCAGATACAGATAATTTGTGGCATAGCCA
Found at i:71565450 original size:27 final size:27
Alignment explanation
Indices: 71565407--71565466 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
71565397 TTAACCCTAG
* *
71565407 GGGTATAAAGGTCATTTAGCATACGTA
1 GGGTATAAAGGTAATTTAGCATACATA
* *
71565434 GGGTATAATGGTAATTTTGCATACATA
1 GGGTATAAAGGTAATTTAGCATACATA
71565461 GGGTAT
1 GGGTAT
71565467 TCTAGTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.33
Consensus pattern (27 bp):
GGGTATAAAGGTAATTTAGCATACATA
Found at i:71567150 original size:27 final size:27
Alignment explanation
Indices: 71567120--71567297 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
71567110 ATATTGAGCC
* *
71567120 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
71567147 CGCACGCTTAGTGCCACGTAATCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
71567174 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
71567202 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71567229 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
71567256 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71567283 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
71567298 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 96 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71567280 original size:54 final size:55
Alignment explanation
Indices: 71567120--71567297 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 55
71567110 ATATTGAGCC
* * * * * * * * *
71567120 CGCACACTCAGTGCTATATAATCA-ACTCGCACGCTTAGTGCCACGTAATCGAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* ** * *
71567174 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* **
71567229 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
*
71567283 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
71567298 GTACAATTTA
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
54 58 0.57
55 44 0.43
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
Found at i:71574345 original size:27 final size:27
Alignment explanation
Indices: 71574315--71574492 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
71574305 ATATTGAGCC
* *
71574315 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
71574342 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71574369 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71574397 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71574424 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
71574451 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
71574478 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71574493 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71574427 original size:55 final size:54
Alignment explanation
Indices: 71574315--71574492 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
71574305 ATATTGAGCC
* * * * *
71574315 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
71574369 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
71574424 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
71574478 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71574493 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:71582349 original size:27 final size:27
Alignment explanation
Indices: 71582319--71582496 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
71582309 ATATTGAGCC
* *
71582319 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
71582346 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
71582373 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
71582401 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71582428 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
71582455 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
71582482 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71582497 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71582431 original size:55 final size:54
Alignment explanation
Indices: 71582319--71582496 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
71582309 ATATTGAGCC
* * * * *
71582319 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
71582373 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
71582428 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
71582482 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
71582497 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:71586722 original size:27 final size:27
Alignment explanation
Indices: 71586692--71586869 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
71586682 ATATTGAGCC
* *
71586692 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
71586719 CGCACGCTTAGTGCCACGTAATCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
*
71586746 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
71586774 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
71586801 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
71586828 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
71586855 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
71586870 GTACAATTTA
Statistics
Matches: 122, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 96 0.79
28 25 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:71586852 original size:54 final size:55
Alignment explanation
Indices: 71586692--71586869 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 55
71586682 ATATTGAGCC
* * * * * * * * *
71586692 CGCACACTCAGTGCTATATAATCA-ACTCGCACGCTTAGTGCCACGTAATCGAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* ** * *
71586746 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* **
71586801 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
*
71586855 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
71586870 GTACAATTTA
Statistics
Matches: 102, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
54 58 0.57
55 44 0.43
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
Found at i:71591287 original size:28 final size:28
Alignment explanation
Indices: 71591219--71591400 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
71591209 CATGAGATTG
* * * * *
71591219 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
71591248 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71591276 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71591304 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
71591332 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
71591360 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
71591387 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
71591401 GACTTAATAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 17 0.12
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Done.