Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 225 of 295
Found at i:71995642 original size:53 final size:52
Alignment explanation
Indices: 71995562--71995667 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 52
71995552 GCGTGTCCCT
71995562 GCCGAGCCCAAGTTGAGTCCAATTTGGAAAAAGGCTAATTTTGAGGGCTCTTA
1 GCCGAGCCCAAGTTGAGTCCAATTTGG-AAAAGGCTAATTTTGAGGGCTCTTA
71995615 GCCGAGCCCAAGTTGAGTCCAATTTGGAAAAGGCTAATTTTGAGGGCTCTTA
1 GCCGAGCCCAAGTTGAGTCCAATTTGGAAAAGGCTAATTTTGAGGGCTCTTA
71995667 G
1 G
71995668 GCATTCCAAA
Statistics
Matches: 53, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 26 0.49
53 27 0.51
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.26
Consensus pattern (52 bp):
GCCGAGCCCAAGTTGAGTCCAATTTGGAAAAGGCTAATTTTGAGGGCTCTTA
Found at i:72011669 original size:49 final size:49
Alignment explanation
Indices: 72011576--72011674 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
72011566 TAGAGGTAGG
* *
72011576 TATTGAGATAGCTTCAGCTACATATATATTGGCACTTCGGGTGCAAGAT
1 TATTGAGATAGCTTCAGCTACATATATATTGGAACTTAGGGTGCAAGAT
* * * * **
72011625 TATTGAGATAGCTTCGGCTATATTTTTATTGGAACTTATTGTGCAAGAT
1 TATTGAGATAGCTTCAGCTACATATATATTGGAACTTAGGGTGCAAGAT
72011674 T
1 T
72011675 CCCAGGTGTC
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (49 bp):
TATTGAGATAGCTTCAGCTACATATATATTGGAACTTAGGGTGCAAGAT
Found at i:72017007 original size:6 final size:6
Alignment explanation
Indices: 72016966--72017006 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
72016956 GTTAAGGTGA
* *
72016966 GGTTTC GGTTTC GGTTTC GGTTTC GGTTTT GGTTTT GGTTT
1 GGTTTC GGTTTC GGTTTC GGTTTC GGTTTC GGTTTC GGTTT
72017007 TTGGGTAGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.00, C:0.10, G:0.34, T:0.56
Consensus pattern (6 bp):
GGTTTC
Found at i:72017335 original size:19 final size:18
Alignment explanation
Indices: 72017311--72017355 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
72017301 ATTTGGCCAT
72017311 ATGGGCCACAATGGGCTAA
1 ATGGGCC-CAATGGGCTAA
*
72017330 ATGGGCCCGATGGGCT-A
1 ATGGGCCCAATGGGCTAA
*
72017347 TTGGGCCCA
1 ATGGGCCCA
72017356 TAATAGGCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 8 0.35
18 8 0.35
19 7 0.30
ACGTcount: A:0.22, C:0.24, G:0.36, T:0.18
Consensus pattern (18 bp):
ATGGGCCCAATGGGCTAA
Found at i:72017344 original size:18 final size:19
Alignment explanation
Indices: 72017311--72017346 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
72017301 ATTTGGCCAT
72017311 ATGGGCCACAATGGGCTAA
1 ATGGGCCACAATGGGCTAA
*
72017330 ATGGGCC-CGATGGGCTA
1 ATGGGCCACAATGGGCTA
72017347 TTGGGCCCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.25, C:0.22, G:0.36, T:0.17
Consensus pattern (19 bp):
ATGGGCCACAATGGGCTAA
Found at i:72017467 original size:29 final size:28
Alignment explanation
Indices: 72017413--72017473 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 28
72017403 GTGAGCATGA
*
72017413 ATATGAATGTGACTGGGCCTAATGGGCC
1 ATATAAATGTGACTGGGCCTAATGGGCC
* * *
72017441 ATATAAATGTGATTTGGGCCTAGTGGGTC
1 ATATAAATGTGA-CTGGGCCTAATGGGCC
72017470 ATAT
1 ATAT
72017474 TCAAGTCATT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (28 bp):
ATATAAATGTGACTGGGCCTAATGGGCC
Found at i:72017484 original size:29 final size:29
Alignment explanation
Indices: 72017426--72017501 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
72017416 TGAATGTGAC
*
72017426 TGGGCCTAATGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATGTCATT
* * *
72017455 TGGGCCTAGTGGGTCATATTCAA-GTCATT
1 TGGGCCTAATGGGCCATA-TAAATGTCATT
* *
72017484 TGAGCGTAATGGGCCATA
1 TGGGCCTAATGGGCCATA
72017502 CGAATATGAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
29 35 0.92
30 3 0.08
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATGTCATT
Found at i:72020378 original size:27 final size:27
Alignment explanation
Indices: 72020330--72020385 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
72020320 AATACTTGAA
*
72020330 ATCATTTCAAGTTTCACATCTCATTTC
1 ATCATTTCAAGTTTCACATCTCATCTC
* **
72020357 ATCATTTCATGTTTCATTTCTCATCTC
1 ATCATTTCAAGTTTCACATCTCATCTC
72020384 AT
1 AT
72020386 ATCCATTTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.25, G:0.04, T:0.48
Consensus pattern (27 bp):
ATCATTTCAAGTTTCACATCTCATCTC
Found at i:72021548 original size:13 final size:13
Alignment explanation
Indices: 72021530--72021554 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72021520 CTTCTTCTCA
72021530 TTTTCTTTCTTTC
1 TTTTCTTTCTTTC
72021543 TTTTCTTTCTTT
1 TTTTCTTTCTTT
72021555 AATGTTTGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTCTTTC
Found at i:72023057 original size:37 final size:37
Alignment explanation
Indices: 72022998--72023106 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
72022988 AGCTCAGACG
* * *
72022998 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
72023035 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
72023072 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
72023107 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:72023379 original size:47 final size:47
Alignment explanation
Indices: 72023317--72023703 Score: 558
Period size: 47 Copynumber: 8.1 Consensus size: 47
72023307 ACACGTTTCG
* * * **
72023317 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
72023364 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72023411 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72023458 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
72023505 CATTGGCCATTCGGCCTTATCACGCATATATATATAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--CACATACGCAT--GTTCACATTCATCA
72023556 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
72023603 CATTGGCCATTCGGCCTTATCACACATATATATACTGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC--ATACGCA-T-GTTCACATTCATCA
*
72023654 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72023701 CAT
1 CAT
72023704 AAAATCCTAA
Statistics
Matches: 310, Mismatches: 22, Indels: 16
0.89 0.06 0.05
Matches are distributed among these distances:
47 211 0.68
48 1 0.00
49 22 0.07
50 1 0.00
51 75 0.24
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:72023428 original size:94 final size:97
Alignment explanation
Indices: 72023317--72023703 Score: 617
Period size: 98 Copynumber: 4.0 Consensus size: 97
72023307 ACACGTTTCG
*
72023317 CATTAGCCATTCGGCCTTA-C-CACATATAT-TCAT-GTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATAT-ATGGTTCACATTCATCACATTGGCCATTCGG
* * *
72023378 CCTTATCTCATATATGCATGTTCACATTCATCA
65 CCTTATCACACATACGCATGTTCACATTCATCA
***
72023411 CATTGGCCATTCGGCCTTATCACAC--ATACGCAT-GTTCACATTCATCACATTGGCCATTCGGC
1 CATTGGCCATTCGGCCTTATCACACATATATATATGGTTCACATTCATCACATTGGCCATTCGGC
72023473 CTTATCACACATACGCATGTTCACATTCATCA
66 CTTATCACACATACGCATGTTCACATTCATCA
*
72023505 CATTGGCCATTCGGCCTTATCACGCATATATATATAGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATAT-GGTTCACATTCATCACATTGGCCATTCGG
72023570 CCTTATCACACATACGCATGTTCACATTCATCA
65 CCTTATCACACATACGCATGTTCACATTCATCA
72023603 CATTGGCCATTCGGCCTTATCACACATATATATACTGGTTCACATTCATCACATTGGCCATTCGG
1 CATTGGCCATTCGGCCTTATCACACATATATATA-TGGTTCACATTCATCACATTGGCCATTCGG
*
72023668 CCTTATCACACATACGCATGTTCACATCCATCA
65 CCTTATCACACATACGCATGTTCACATTCATCA
72023701 CAT
1 CAT
72023704 AAAATCCTAA
Statistics
Matches: 273, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
94 105 0.38
95 1 0.00
96 8 0.03
98 158 0.58
99 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (97 bp):
CATTGGCCATTCGGCCTTATCACACATATATATATGGTTCACATTCATCACATTGGCCATTCGGC
CTTATCACACATACGCATGTTCACATTCATCA
Found at i:72026024 original size:85 final size:85
Alignment explanation
Indices: 72025895--72026073 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72025885 TATTTTATTG
*
72025895 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72025960 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72025980 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72026045 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72026065 CCCATGCTC
1 CCCATGCTC
72026074 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72027621 original size:58 final size:57
Alignment explanation
Indices: 72027524--72027632 Score: 137
Period size: 57 Copynumber: 1.9 Consensus size: 57
72027514 GCCCACTGAT
* * * * *
72027524 CGATCTCGCACACATAGTGTTTGGTTGAAGAACTCGCACACACATTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGATTAAAGAACTCGCACACACAGTGCCTCAATTAC
* * *
72027581 CGATTTCGCACACATAGTGCTCGATTAAAAGAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGATT-AAAGAACTCGCACACACAGTGCCTC
72027633 TAATCATTCG
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
57 22 0.51
58 21 0.49
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (57 bp):
CGATCTCGCACACATAGTGCTCGATTAAAGAACTCGCACACACAGTGCCTCAATTAC
Found at i:72027876 original size:40 final size:40
Alignment explanation
Indices: 72027844--72028115 Score: 427
Period size: 40 Copynumber: 6.8 Consensus size: 40
72027834 CCAACATGAT
* * *
72027844 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
72027884 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72027924 TGCTCCTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72027964 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72028004 TGCTCTTTGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
72028044 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
72028084 TGTTCTTCGGGACTTAGCCCAGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
72028116 CTCAATTCTC
Statistics
Matches: 213, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 213 1.00
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:72029430 original size:37 final size:37
Alignment explanation
Indices: 72029380--72029566 Score: 302
Period size: 37 Copynumber: 5.1 Consensus size: 37
72029370 CTTTAGCTCA
* * * * *
72029380 GACAAAATCTCCACATGAAGTTATCGGGTCTTACTCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
72029417 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
72029454 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
72029491 GACATAATATCCACACATAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
72029528 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
72029565 GA
1 GA
72029567 ATATATTTCC
Statistics
Matches: 141, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 141 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:72029834 original size:47 final size:47
Alignment explanation
Indices: 72029777--72030212 Score: 620
Period size: 47 Copynumber: 9.1 Consensus size: 47
72029767 ACACGTTTCG
* * * **
72029777 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * * *
72029824 CATTAGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72029871 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72029918 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72029965 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ** *
72030012 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ACATACGCATGTTCACATTCATCA
*
72030065 CATTGGCCATTCGGCCTTATCACAAATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
***
72030112 CATTGGCCATTCGGCCTTATCACACATATATATACTGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACAC--ATACGCA-T-GTTCACATTCATCA
*
72030163 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
72030210 CAT
1 CAT
72030213 AAAATCCTAA
Statistics
Matches: 356, Mismatches: 23, Indels: 20
0.89 0.06 0.05
Matches are distributed among these distances:
47 263 0.74
48 1 0.00
49 9 0.03
50 1 0.00
51 40 0.11
53 42 0.12
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:72032536 original size:85 final size:85
Alignment explanation
Indices: 72032407--72032585 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
72032397 TATTTTATTG
*
72032407 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72032472 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72032492 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
72032557 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
72032577 CCCATGCTC
1 CCCATGCTC
72032586 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:72037114 original size:14 final size:15
Alignment explanation
Indices: 72037087--72037115 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72037077 TTATTCAACT
72037087 AATGATTGATTAAAA
1 AATGATTGATTAAAA
72037102 AATGATT-ATTAAAA
1 AATGATTGATTAAAA
72037116 GTCCACGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.34
Consensus pattern (15 bp):
AATGATTGATTAAAA
Found at i:72038188 original size:28 final size:27
Alignment explanation
Indices: 72038102--72038191 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
72038092 GTGACAGAGT
*
72038102 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
* ** *
72038131 CACCAGAACAGGT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
72038158 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
72038186 CACCAG
1 CACCAG
72038192 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
27 22 0.44
28 21 0.42
29 7 0.14
ACGTcount: A:0.31, C:0.24, G:0.26, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:72038344 original size:28 final size:28
Alignment explanation
Indices: 72038297--72038361 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
72038287 AAATTAACCC
* *
72038297 TAGGGGTATAAAGGTCATTTTGCATAGA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
72038325 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
*
72038353 TAAGGGTAT
1 TAGGGGTAT
72038362 TCTAGTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:72044940 original size:19 final size:19
Alignment explanation
Indices: 72044902--72044942 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
72044892 GAAGTCTAGA
*
72044902 TTTTTTTTAAAAATTGATT
1 TTTTTTTTAAAAATTCATT
**
72044921 TTTTTTTTAAATTTTCATT
1 TTTTTTTTAAAAATTCATT
72044940 TTT
1 TTT
72044943 GTAAACTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTTTTTTAAAAATTCATT
Found at i:72045982 original size:55 final size:56
Alignment explanation
Indices: 72045917--72046031 Score: 126
Period size: 55 Copynumber: 2.1 Consensus size: 56
72045907 AGCATTGCTG
* * * * **
72045917 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGTGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTCGTGGCAAAGCCA
* * *
72045973 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTCGTGGCAAAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTCGTGGCAAAGCCA
72046028 CCAG
1 CCAG
72046032 GACACTTCCT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
55 28 0.57
56 21 0.43
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTCGTGGCAAAGCCA
Found at i:72045999 original size:27 final size:27
Alignment explanation
Indices: 72045936--72046031 Score: 111
Period size: 28 Copynumber: 3.4 Consensus size: 27
72045926 GAAAATGTGA
* *
72045936 CAGAGTCACCAGATACAGATATTTTGTGG
1 CAGAGCCACCAGA-ACAGATA-TTCGTGG
* *
72045965 CAGTGCCACCAGAACAGATATACGTGG
1 CAGAGCCACCAGAACAGATATTCGTGG
*
72045992 CAGGGCCACCAGAACAGATAATTCGTGG
1 CAGAGCCACCAGAACAGAT-ATTCGTGG
*
72046020 CAAAGCCACCAG
1 CAGAGCCACCAG
72046032 GACACTTCCT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 23 0.40
28 24 0.41
29 11 0.19
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.17
Consensus pattern (27 bp):
CAGAGCCACCAGAACAGATATTCGTGG
Found at i:72046027 original size:28 final size:28
Alignment explanation
Indices: 72045936--72046031 Score: 113
Period size: 27 Copynumber: 3.4 Consensus size: 28
72045926 GAAAATGTGA
* * *
72045936 CAGAGTCACCAGATACAGATATTTTGTGG
1 CAGAGCCACCAGA-ACAGATAATTCGTGG
* *
72045965 CAGTGCCACCAGAACAGAT-ATACGTGG
1 CAGAGCCACCAGAACAGATAATTCGTGG
*
72045992 CAGGGCCACCAGAACAGATAATTCGTGG
1 CAGAGCCACCAGAACAGATAATTCGTGG
*
72046020 CAAAGCCACCAG
1 CAGAGCCACCAG
72046032 GACACTTCCT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 23 0.40
28 23 0.40
29 11 0.19
ACGTcount: A:0.33, C:0.25, G:0.25, T:0.17
Consensus pattern (28 bp):
CAGAGCCACCAGAACAGATAATTCGTGG
Found at i:72046184 original size:28 final size:28
Alignment explanation
Indices: 72046138--72046201 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
72046128 AATTAACCCT
* *
72046138 AGGGGTATAAAGGTCATTTTGCATACAT
1 AGGGGTATAAAGGTAATTTTGCATACAA
* *
72046166 AGTGGTATAATGGTAATTTTGCATACAA
1 AGGGGTATAAAGGTAATTTTGCATACAA
72046194 AGGGGTAT
1 AGGGGTAT
72046202 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.33, C:0.08, G:0.27, T:0.33
Consensus pattern (28 bp):
AGGGGTATAAAGGTAATTTTGCATACAA
Found at i:72052260 original size:20 final size:20
Alignment explanation
Indices: 72052221--72052260 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
72052211 AAACTTCTTC
* *
72052221 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
72052241 ACTTACTGACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
72052261 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.38
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:72052636 original size:55 final size:56
Alignment explanation
Indices: 72052491--72052700 Score: 245
Period size: 55 Copynumber: 3.8 Consensus size: 56
72052481 GTATCCTTTT
* * *
72052491 GAAACTTACCATTGTCATGTCTCGACATGGTCTTACATGGTATCC-TTGCCTTAT-
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
* * * *
72052545 G-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
* * *
72052599 GAAACTTATCAATGCCATGTCTTTACATGGTCTTACATGATATCCTTT-CC-T-TA
1 GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
* *
72052652 GAAGCCTTACCAATTGCCATGTCTTGGCATGGTCTTACATGGTATCCTT
1 GAA-ACTTACCAA-TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
72052701 AACCCCTAAT
Statistics
Matches: 131, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 2 0.02
53 47 0.36
54 10 0.08
55 67 0.51
56 5 0.04
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (56 bp):
GAAACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTATA
Found at i:72052643 original size:108 final size:109
Alignment explanation
Indices: 72052491--72052693 Score: 293
Period size: 108 Copynumber: 1.9 Consensus size: 109
72052481 GTATCCTTTT
* * *
72052491 GAAACTTACCATTGTCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTA-GAACCTCACCA
72052555 A-TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
65 ATTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
* ** * *
72052599 GAAACTTATCAATGCCATGTCTTTACATGGTCTTACATGATATCCTTTCCTTAGAAGCCTTACCA
1 GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAA-CCTCACCA
*
72052664 ATTGCCATGTCTTGGCATGGTCTTACATGG
65 ATTGCCATGCCTTGGCATGGTCTTACATGG
72052694 TATCCTTAAC
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.55
109 7 0.08
110 27 0.33
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (109 bp):
GAAACTTACCAATGCCATGTCTCGACATGGTCTTACATGATATCCTTGCCTTAGAACCTCACCAA
TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATA
Found at i:72054229 original size:17 final size:17
Alignment explanation
Indices: 72054207--72054241 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
72054197 ACCGAGGCAA
72054207 GTTCATTTGCAAATTAT
1 GTTCATTTGCAAATTAT
*
72054224 GTTCATTTGGAAATTAT
1 GTTCATTTGCAAATTAT
72054241 G
1 G
72054242 CAACATGCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.09, G:0.17, T:0.46
Consensus pattern (17 bp):
GTTCATTTGCAAATTAT
Found at i:72054525 original size:20 final size:20
Alignment explanation
Indices: 72054497--72054534 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72054487 CTAGGAACTA
72054497 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
72054517 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
72054535 TATATGTTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:72063247 original size:38 final size:38
Alignment explanation
Indices: 72063197--72063299 Score: 145
Period size: 38 Copynumber: 2.7 Consensus size: 38
72063187 TTAAACTCAT
* *
72063197 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
* *
72063235 ATATAATACCAGCACGAAGCCTACGGGATTTAACCCGA
1 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
*
72063273 ATATAATTCCAGCA-TATAGCCTGCGGG
1 ATATAATACCAGCACTA-AGCCTGCGGG
72063300 TCTTTAAGCC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
37 1 0.02
38 56 0.98
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (38 bp):
ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGA
Found at i:72066999 original size:58 final size:58
Alignment explanation
Indices: 72066882--72067050 Score: 268
Period size: 58 Copynumber: 2.9 Consensus size: 58
72066872 GTGCCCACTA
* * **
72066882 ACCGATCTCGCACACATAGTGCTCGGTTGAA-GAACTCGCACACGTAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
*
72066939 ACCGGTCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
* *
72066997 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTTGCACATACAGTGCCTC
1 ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTC
72067051 TAATCATTCG
Statistics
Matches: 103, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
57 29 0.28
58 74 0.72
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (58 bp):
ACCGATCTCGCACACATAGTGCTCGGTTAAAGGAATTCGCACACACAGTGCCTCAATT
Found at i:72067038 original size:29 final size:29
Alignment explanation
Indices: 72066889--72067039 Score: 114
Period size: 29 Copynumber: 5.2 Consensus size: 29
72066879 CTAACCGATC
* *
72066889 TCGCACACATAGTGCTCGGTTGAA-GAAC
1 TCGCACACATAGTGCTCGGTTAAAGGAAT
* ** **
72066917 TCGCACACGTAGTGCCTCAATTACCGG--T
1 TCGCACACATAGTG-CTCGGTTAAAGGAAT
72066945 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACATAGTGCTCGGTTAAAGGAAT
* ** **
72066975 TCGCACACACAGTGCCTCAATT-ACCG-AT
1 TCGCACACATAGTG-CTCGGTTAAAGGAAT
72067003 CTCGCACACATAGTGCTCGGTTAAAGGAAT
1 -TCGCACACATAGTGCTCGGTTAAAGGAAT
*
72067033 TTGCACA
1 TCGCACA
72067040 TACAGTGCCT
Statistics
Matches: 91, Mismatches: 23, Indels: 17
0.69 0.18 0.13
Matches are distributed among these distances:
28 28 0.31
29 54 0.59
30 9 0.10
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (29 bp):
TCGCACACATAGTGCTCGGTTAAAGGAAT
Found at i:72067265 original size:43 final size:43
Alignment explanation
Indices: 72067204--72067339 Score: 218
Period size: 43 Copynumber: 3.2 Consensus size: 43
72067194 CCTTGCTTGA
** * *
72067204 ATCACCGGCATTAAGCCTGCTAGGCATGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
72067247 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
72067290 ATCACCGGCACGAAGCCTACTAGGCACGAAGGCCCGAATGCAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
72067333 ATCACCG
1 ATCACCG
72067340 AGTTTCATGC
Statistics
Matches: 87, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 87 1.00
ACGTcount: A:0.31, C:0.34, G:0.24, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:72067408 original size:27 final size:27
Alignment explanation
Indices: 72067378--72067433 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
72067368 ATACATTTCA
72067378 TATAGCATATCATATTTGTAATTCACT
1 TATAGCATATCATATTTGTAATTCACT
72067405 TATAGCATATCATATTTGTAATTCACT
1 TATAGCATATCATATTTGTAATTCACT
72067432 TA
1 TA
72067434 CTTTGTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (27 bp):
TATAGCATATCATATTTGTAATTCACT
Found at i:72068974 original size:40 final size:38
Alignment explanation
Indices: 72068912--72069030 Score: 94
Period size: 38 Copynumber: 3.1 Consensus size: 38
72068902 GCAAGGTATA
* * *
72068912 AAACTAGAACATAACACTAGCACGAAACCTACGGGACTTT
1 AAACTAG-ATATAATACCAGCACGAAACCTACGGGA-TTT
* * ** *
72068952 AAACTCATATATAATACCAGCACTAGGCCTGCGGGATTT
1 AAACT-AGATATAATACCAGCACGAAACCTACGGGATTT
* * * * *
72068991 AACCTGGATATAATACCAGCACGAAGCTTGCGGGATTT
1 AAACTAGATATAATACCAGCACGAAACCTACGGGATTT
72069029 AA
1 AA
72069031 CCCGAATATA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
38 30 0.47
39 7 0.11
40 26 0.41
41 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (38 bp):
AAACTAGATATAATACCAGCACGAAACCTACGGGATTT
Found at i:72069062 original size:38 final size:38
Alignment explanation
Indices: 72068960--72069042 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 38
72068950 TTAAACTCAT
* * * *
72068960 ATATAATACCAGCACTAGGCCTGCGGGATTTAACCTGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
*
72068998 ATATAATACCAGCACGAAGCTTGCGGGATTTAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
72069036 ATATAAT
1 ATATAAT
72069043 TCTAGCATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGA
Found at i:72072032 original size:42 final size:43
Alignment explanation
Indices: 72071983--72072104 Score: 174
Period size: 43 Copynumber: 2.8 Consensus size: 43
72071973 CTAAACTCAT
* * *
72071983 TCACCGGCATTACA-CCTGCTAAGCTCGAAGCCCGATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAC
* **
72072025 TCACCGGCATTATAGCCTGCCAGGCTCAAAGCCTAATATTAAC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAC
72072068 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAA-GCCCGA
72072105 ATAGTACCGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 13 0.19
43 52 0.75
44 4 0.06
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (43 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGCCCGATATTAAC
Found at i:72076202 original size:40 final size:40
Alignment explanation
Indices: 72076104--72076366 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
72076094 TCCTCGTTCA
* * * * *
72076104 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72076143 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72076183 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72076223 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72076263 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
72076303 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72076343 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72076367 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72076375 original size:41 final size:41
Alignment explanation
Indices: 72076298--72076375 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
72076288 TTAGTATCTC
* * *
72076298 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
72076339 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
72076376 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:72084135 original size:40 final size:40
Alignment explanation
Indices: 72084037--72084299 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
72084027 TCCTCGTTCA
* * * * *
72084037 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
72084076 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72084116 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
72084156 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
72084196 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
72084236 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
72084276 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
72084300 CAGCATTCAA
Statistics
Matches: 200, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 37 0.19
40 155 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:72084308 original size:41 final size:41
Alignment explanation
Indices: 72084231--72084308 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
72084221 TTAGTATCTC
* * *
72084231 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
72084272 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
72084309 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:72089701 original size:47 final size:47
Alignment explanation
Indices: 72089625--72089796 Score: 172
Period size: 47 Copynumber: 3.7 Consensus size: 47
72089615 GGATGGTTGA
*
72089625 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* * *** *
72089672 GCATCCGAGCTCGTTGAGTTGGGTCCGAGTTC-ACTTATG-GA-T-G
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
* * * * *
72089715 CGAATGTCTGAACTTGTTGAGTTGAGTCTGAGTTTGAGAGATGTAACTAG
1 -GCA--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
*
72089765 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
72089797 ACTTATGGAT
Statistics
Matches: 94, Mismatches: 24, Indels: 14
0.71 0.18 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 27 0.29
47 57 0.61
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.30
Consensus pattern (47 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:72089768 original size:93 final size:93
Alignment explanation
Indices: 72089631--72089811 Score: 319
Period size: 93 Copynumber: 1.9 Consensus size: 93
72089621 TTGAGCATCC
*
72089631 GAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGGGT
1 GAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGT
72089696 CCGAGTTCACTTATGGATGCGAATGTCT
66 CCGAGTTCACTTATGGATGCGAATGTCT
* *
72089724 GAACTTGTTGAGTTGAG-TCTGAGTTTGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAG
1 GAACTCGTTGAGTTGAGTTC-GAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAG
72089788 TCCGAGTTCACTTATGGATGCGAA
65 TCCGAGTTCACTTATGGATGCGAA
72089812 CACCCGAGCT
Statistics
Matches: 84, Mismatches: 3, Indels: 2
0.94 0.03 0.02
Matches are distributed among these distances:
92 2 0.02
93 82 0.98
ACGTcount: A:0.23, C:0.16, G:0.31, T:0.30
Consensus pattern (93 bp):
GAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGT
CCGAGTTCACTTATGGATGCGAATGTCT
Found at i:72089833 original size:93 final size:93
Alignment explanation
Indices: 72089629--72089842 Score: 313
Period size: 93 Copynumber: 2.3 Consensus size: 93
72089619 GGTTGAGCAT
72089629 CCGAACTCGTTGAGTTGAGT-TCGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 CCGAACTCGTTGAGTTGAGTCT-GAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
* ***
72089693 GGTCCGAGTTCACTTATGGATGCGAATGT
65 AGTCCGAGTTCACTTATGGATGCGAACAC
* * *
72089722 CTGAACTTGTTGAGTTGAGTCTGAGTTTGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
1 CCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
72089787 GTCCGAGTTCACTTATGGATGCGAACAC
66 GTCCGAGTTCACTTATGGATGCGAACAC
* * * *
72089815 CCGAGCTCATTGACTTGAGTCCGAGTTC
1 CCGAACTCGTTGAGTTGAGTCTGAGTTC
72089843 ACTTATGGGC
Statistics
Matches: 106, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 105 0.99
94 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.29
Consensus pattern (93 bp):
CCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGA
GTCCGAGTTCACTTATGGATGCGAACAC
Found at i:72094908 original size:21 final size:18
Alignment explanation
Indices: 72094871--72094918 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 18
72094861 TGAACTTTGG
72094871 TTCAAGTTTTCAATCTCATA
1 TTCAA-TTTTCAATCTCA-A
72094891 TCTCAATTTTCAATTCTCAA
1 T-TCAATTTTCAA-TCTCAA
72094911 TTCAATTT
1 TTCAATTT
72094919 CTCGTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
19 7 0.27
20 10 0.38
21 9 0.35
ACGTcount: A:0.29, C:0.21, G:0.02, T:0.48
Consensus pattern (18 bp):
TTCAATTTTCAATCTCAA
Found at i:72095583 original size:15 final size:15
Alignment explanation
Indices: 72095565--72095605 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
72095555 TTAAATAAAT
72095565 ATAAATTCAATCAAA
1 ATAAATTCAATCAAA
* *
72095580 ATAATTTCAATCAAT
1 ATAAATTCAATCAAA
72095595 ATAAATTCAAT
1 ATAAATTCAAT
72095606 AAATTCATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAAATTCAATCAAA
Found at i:72096335 original size:27 final size:24
Alignment explanation
Indices: 72096285--72096335 Score: 57
Period size: 26 Copynumber: 2.0 Consensus size: 24
72096275 CTTCAATTCC
*
72096285 TCCTTTTTTTTCTCTTTCTCTTTT
1 TCCTTTTTTTTCCCTTTCTCTTTT
*
72096309 TCCTTCTTTCTTTCCCTTATCTGTTTT
1 TCCTT-TTT-TTTCCCTT-TCTCTTTT
72096336 CGTTCTTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 5 0.23
25 3 0.14
26 7 0.32
27 7 0.32
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (24 bp):
TCCTTTTTTTTCCCTTTCTCTTTT
Found at i:72098239 original size:47 final size:46
Alignment explanation
Indices: 72098122--72098253 Score: 146
Period size: 47 Copynumber: 2.8 Consensus size: 46
72098112 TGGGTTATGT
72098122 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGAC
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATT--GAC
* * *
72098170 GAGGGCTAGAGTAAGA--AGTGTCTGGGACAT-GCATCAGCCACATT-AC
1 GAGAGCCAGTGTAAGACCA-TGTCTGGGACATGGCATC-G--ACATTGAC
*
72098216 GATAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
72098254 GCGTAGAGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
46 20 0.29
47 26 0.37
48 19 0.27
49 5 0.07
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAC
Found at i:72098271 original size:47 final size:46
Alignment explanation
Indices: 72098126--72098279 Score: 127
Period size: 47 Copynumber: 3.3 Consensus size: 46
72098116 TTATGTGAGA
* * * *
72098126 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGA-TAGT
* * * * * *
72098174 GCTAGAGTAAGA--AGTGTCTGGGACAT-GCATCAGCCACA-TTACGAT
1 GCCAGTGTAAGACCA-TGTCTGGGACATGGCATCGGCTAGAGATA-G-T
72098219 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGTAGAGATAGT
1 -GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TAGAGATAGT
72098267 GCCAGTGTAAGAC
1 GCCAGTGTAAGAC
72098280 GTGTCTTCGG
Statistics
Matches: 81, Mismatches: 16, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 1 0.01
46 17 0.21
47 37 0.46
48 19 0.23
49 3 0.04
50 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (46 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAGAGATAGT
Found at i:72098407 original size:49 final size:49
Alignment explanation
Indices: 72098302--72098436 Score: 159
Period size: 49 Copynumber: 2.8 Consensus size: 49
72098292 TCAATGATGG
* * * * * *
72098302 TAGCCAGTGTAA-GACGTGTCTGGGGCAT-GCATCAGTACTTATACAGA
1 TAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGTACTGATAAAGA
* *
72098349 AAGCTAGTGTAAGGCCATGTCTGGGACATGGCATCGGT-CTCGATAAAGA
1 TAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGTACT-GATAAAGA
*
72098398 TAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTA
1 TAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGTA
72098437 ACCTAACCCA
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
47 10 0.14
48 15 0.21
49 48 0.66
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (49 bp):
TAGCCAGTGTAAGGCCATGTCTGGGACATGGCATCGGTACTGATAAAGA
Found at i:72100346 original size:11 final size:11
Alignment explanation
Indices: 72100319--72100352 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
72100309 TTCCACAACA
72100319 TTCTCTCA-TT
1 TTCTCTCACTT
*
72100329 CTCTCTCACTT
1 TTCTCTCACTT
72100340 TTCTCTCACTT
1 TTCTCTCACTT
72100351 TT
1 TT
72100353 TCCATCCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.09, C:0.35, G:0.00, T:0.56
Consensus pattern (11 bp):
TTCTCTCACTT
Found at i:72107620 original size:22 final size:24
Alignment explanation
Indices: 72107575--72107622 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 24
72107565 TAATCTTTAA
72107575 TATATAATTATATCTATTATAATT
1 TATATAATTATATCTATTATAATT
72107599 TATAT-ATTA-ATCT-TTATCAATT
1 TATATAATTATATCTATTAT-AATT
72107621 TA
1 TA
72107623 GCATAGAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.17
22 10 0.43
23 4 0.17
24 5 0.22
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (24 bp):
TATATAATTATATCTATTATAATT
Found at i:72107671 original size:118 final size:114
Alignment explanation
Indices: 72107434--72107657 Score: 265
Period size: 118 Copynumber: 1.9 Consensus size: 114
72107424 GTTTTTAGTT
72107434 TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
1 TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
*
72107499 TTTTAGGATTAGTGTTAATTTAATCATATTTTATTTGATAAGTTTTTAATAA
66 TTTTAGAATTAGTGTTAATTTAATCATATTTTATTT-AT-AG-TTTTAATAA
* *
72107551 TAATAATAAGATGATAATCT-TTAATATATAATTATATCTATTATAATTTATATATTAATCT-TT
1 TAATAA-AAAATGATAAT-TATTAATATATAATTATATCCATTATAA--TATATATTAAT-TATT
*
72107614 ATCAATTTAGCATAGAATTAG-GATTAGTTTTAATCATATTTTAT
61 ATCAATTT----TAGAATTAGTG-TTA-ATTTAATCATATTTTAT
72107658 CTTTGTTTAA
Statistics
Matches: 92, Mismatches: 4, Indels: 14
0.84 0.04 0.13
Matches are distributed among these distances:
117 6 0.07
118 35 0.38
119 1 0.01
120 21 0.23
121 1 0.01
123 1 0.01
124 11 0.12
125 16 0.17
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (114 bp):
TAATAAAAAATGATAATTATTAATATATAATTATATCCATTATAATATATATTAATTATTATCAA
TTTTAGAATTAGTGTTAATTTAATCATATTTTATTTATAGTTTTAATAA
Found at i:72108206 original size:3 final size:3
Alignment explanation
Indices: 72108198--72108233 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
72108188 CTTTTCCTTC
72108198 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
72108234 TATTGTAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:72109258 original size:28 final size:26
Alignment explanation
Indices: 72109219--72109323 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
72109209 TCCTGTTTAG
* *
72109219 AATACTTTAGTTTACTAAAATTACTGA
1 AATACCTTAGTTT-GTAAAATTACTGA
*
72109246 AATACGCTTAGTTTGTAAAAATACTGA
1 AATAC-CTTAGTTTGTAAAATTACTGA
* *
72109273 AATACCCTCGATTTGTAAAATTACTGA
1 AATACCTTAG-TTTGTAAAATTACTGA
* *
72109300 AATACCTTCGACTTGTAAAATTAC
1 AATACCTTAG-TTTGTAAAATTAC
72109324 CAAAGTACCC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
26 3 0.04
27 58 0.85
28 7 0.10
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.35
Consensus pattern (26 bp):
AATACCTTAGTTTGTAAAATTACTGA
Found at i:72109264 original size:27 final size:27
Alignment explanation
Indices: 72109234--72109323 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
72109224 TTTAGTTTAC
72109234 TAAAATTACTGAAATACGCTTAG-TTTG
1 TAAAATTACTGAAATAC-CTTAGATTTG
* * *
72109261 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACTGAAATACCTTAGATTTG
* *
72109288 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACTGAAATACCTTAGATTTG
72109315 TAAAATTAC
1 TAAAATTAC
72109324 CAAAGTACCC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 3 0.05
27 53 0.95
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (27 bp):
TAAAATTACTGAAATACCTTAGATTTG
Found at i:72109349 original size:54 final size:54
Alignment explanation
Indices: 72109229--72109350 Score: 131
Period size: 54 Copynumber: 2.2 Consensus size: 54
72109219 AATACTTTAG
* * * *
72109229 TTTACTAAAATTACTGAAATACGCTTAGTTTGTAAAAATACTGAAATACCCTCGA
1 TTTA-TAAAATTACTGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCAA
* * *
72109284 TTTGTAAAATTACTGAAATAC-CTTCGACTTGTAAAATTAC-CAAAGTACCCCCAA
1 TTTATAAAATTACTGAAATACGCTTAG-CTTGTAAAAATACTCAAA-TACCCCCAA
*
72109338 TTTATAGAATTAC
1 TTTATAAAATTAC
72109351 CATTTTACCC
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
53 7 0.12
54 46 0.82
55 3 0.05
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (54 bp):
TTTATAAAATTACTGAAATACGCTTAGCTTGTAAAAATACTCAAATACCCCCAA
Found at i:72109395 original size:27 final size:27
Alignment explanation
Indices: 72109329--72109523 Score: 93
Period size: 27 Copynumber: 6.8 Consensus size: 27
72109319 ATTACCAAAG
* * *
72109329 TACCCCCAATTTATAGAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
*
72109356 TACCCCTGATTTACATAATTACCATTT
1 TACCCCCGATTTACATAATTACCATTT
* *
72109383 TACCCCCGTTTTACCCTTGACTTACAAAATTACCGTTT
1 TACCCCCGATTTA--C---A--T----AATTACCATTT
* * * *
72109421 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCCCGATTTACATAATTACCATTT
*** * * *
72109448 TACTGTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACATAATTACCATTT
** * *
72109475 TACCCTTGATTTACAAAATTACTATTT
1 TACCCCCGATTTACATAATTACCATTT
* *
72109502 TACCCTCGATTTACAAAATTAC
1 TACCCCCGATTTACATAATTAC
72109524 TAAAATACCC
Statistics
Matches: 134, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
27 108 0.81
29 1 0.01
32 1 0.01
33 1 0.01
34 1 0.01
36 1 0.01
38 21 0.16
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCCCGATTTACATAATTACCATTT
Found at i:72109395 original size:38 final size:38
Alignment explanation
Indices: 72109353--72109434 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 38
72109343 AGAATTACCA
* *
72109353 TTTTACCCCTGATTTACATAATTACCATTTTACCCCCG
1 TTTTACCCCTGACTTACAAAATTACCATTTTACCCCCG
* * *
72109391 TTTTACCCTTGACTTACAAAATTACCGTTTTACCCTCG
1 TTTTACCCCTGACTTACAAAATTACCATTTTACCCCCG
*
72109429 ATTTAC
1 TTTTAC
72109435 AGAATTATCG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.29, G:0.06, T:0.40
Consensus pattern (38 bp):
TTTTACCCCTGACTTACAAAATTACCATTTTACCCCCG
Found at i:72109524 original size:27 final size:27
Alignment explanation
Indices: 72109391--72109525 Score: 155
Period size: 27 Copynumber: 5.0 Consensus size: 27
72109381 TTTACCCCCG
* * **
72109391 TTTTACCCTTGACTTACAAAATTACCG
1 TTTTACCCTCGATTTACAAAATTACTA
* *
72109418 TTTTACCCTCGATTTACAGAATTA-TCG
1 TTTTACCCTCGATTTACAAAATTACT-A
** * *
72109445 TTTTACTGTCGATTTATAGAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
*
72109472 TTTTACCCTTGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
72109499 TTTTACCCTCGATTTACAAAATTACTA
1 TTTTACCCTCGATTTACAAAATTACTA
72109526 AAATACCCTT
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
27 91 0.99
28 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.42
Consensus pattern (27 bp):
TTTTACCCTCGATTTACAAAATTACTA
Found at i:72109532 original size:27 final size:26
Alignment explanation
Indices: 72109475--72109560 Score: 82
Period size: 27 Copynumber: 3.2 Consensus size: 26
72109465 ATTACTATTT
***
72109475 TACCCTTGATTTACAAAATTACTATTT
1 TACCC-TGATTTACAAAATTACTAAAA
72109502 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCT-GATTTACAAAATTACTAAAA
* ** *
72109529 TACCCTTAGTTTGTAAAATTACCAAAA
1 TACCCTGA-TTTACAAAATTACTAAAA
72109556 TACCC
1 TACCC
72109561 CTAGTTTGTA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.38, C:0.22, G:0.05, T:0.35
Consensus pattern (26 bp):
TACCCTGATTTACAAAATTACTAAAA
Found at i:72109565 original size:27 final size:27
Alignment explanation
Indices: 72109516--72109571 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
72109506 CTCGATTTAC
* *
72109516 AAAATTACTAAAATACCCTTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
72109543 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAGTTTGT
72109570 AA
1 AA
72109572 TGACTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTAGTTTGT
Found at i:72109586 original size:25 final size:26
Alignment explanation
Indices: 72109517--72109588 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 26
72109507 TCGATTTACA
* *
72109517 AAATTACTAAAATACCCTTAGTTTGT
1 AAATGACTAAAATACCCCTAGTTTGT
* *
72109543 AAAATTACCAAAATACCCCTAGTTTGT
1 -AAATGACTAAAATACCCCTAGTTTGT
*
72109570 -AATGACTAAAATGCCCCTA
1 AAATGACTAAAATACCCCTA
72109589 TTAGGGTAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.40
27 24 0.60
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (26 bp):
AAATGACTAAAATACCCCTAGTTTGT
Found at i:72109630 original size:27 final size:27
Alignment explanation
Indices: 72109590--72109656 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
72109580 ATGCCCCTAT
*
72109590 TAGGGTAAAGTGACCGTAA-AGCCCCTG
1 TAGGGTAAAATGACCGTAATA-CCCCTG
72109617 TAGGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
72109644 TAAGGTAAAATGA
1 TAGGGTAAAATGA
72109657 TGAATATGCC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 36 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:72110845 original size:25 final size:25
Alignment explanation
Indices: 72110816--72110863 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
72110806 TTATAATATG
* * *
72110816 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
72110841 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
72110864 GTTTATACAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:72110925 original size:20 final size:20
Alignment explanation
Indices: 72110900--72110942 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
72110890 ATTTTGATAA
72110900 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72110920 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
72110940 ACA
1 ACA
72110943 CGAGATGTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:72110950 original size:20 final size:20
Alignment explanation
Indices: 72110907--72110950 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
72110897 TAAACATGAT
* *
72110907 ATGTATGATATGCACATGAT
1 ATGTATGATATGCACACGAG
72110927 ATGTATGATATGCACACGAG
1 ATGTATGATATGCACACGAG
72110947 ATGT
1 ATGT
72110951 TCATAAATGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACACGAG
Found at i:72111055 original size:25 final size:24
Alignment explanation
Indices: 72110997--72111142 Score: 163
Period size: 25 Copynumber: 6.0 Consensus size: 24
72110987 AGGAAGTGCA
*
72110997 AAAGGGCTTATGCCCTAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
72111020 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
72111045 GAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
72111070 AAAAGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
* *
72111094 AAAGTGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
72111118 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
72111143 GATAAAGCAG
Statistics
Matches: 106, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
23 21 0.20
24 29 0.27
25 56 0.53
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:72111137 original size:74 final size:74
Alignment explanation
Indices: 72110996--72111140 Score: 172
Period size: 74 Copynumber: 2.0 Consensus size: 74
72110986 GAGGAAGTGC
* * * *
72110996 AAAAGGGCTTATGCCCTAGTTATTAAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTATGCCCC
1 AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCC
72111061 AGTTATGAT
66 AGTTATGAT
* *
72111070 AAAA-GGCTTATGCCCCAGTTATAAAAAGTGCTTTTGCCCCAGTTACT-A-AAAGAGGC-TAGGC
1 AAAAGGGCTTATGCCCCAGTTAT-AAAAGGGCTTATGCCCCAGTTA-TGATAAAG-GGCTTAGGC
72111131 CTCCAGTTAT
63 C-CCAGTTAT
72111141 ATGATAAAGC
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
73 25 0.41
74 35 0.57
75 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (74 bp):
AAAAGGGCTTATGCCCCAGTTATAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTAGGCCCC
AGTTATGAT
Found at i:72111370 original size:31 final size:31
Alignment explanation
Indices: 72111335--72111398 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
72111325 CGTTTACCGT
*
72111335 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
* **
72111366 AAAGGTTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
72111397 AA
1 AA
72111399 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:72112193 original size:25 final size:24
Alignment explanation
Indices: 72112146--72112199 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
72112136 TAGTTTTCTC
*
72112146 TTAATTTTTAATTTTATTCAATTA
1 TTAATTTTTAATTTCATTCAATTA
*
72112170 GTTAATTTTTCAA-TTCATTGAATTA
1 -TTAATTTTT-AATTTCATTCAATTA
72112195 TTAAT
1 TTAAT
72112200 AATTTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 5 0.19
25 19 0.73
26 2 0.08
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (24 bp):
TTAATTTTTAATTTCATTCAATTA
Found at i:72112435 original size:11 final size:11
Alignment explanation
Indices: 72112419--72112445 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
72112409 GAATTTATGG
72112419 CAAGTATTCGT
1 CAAGTATTCGT
72112430 CAAGTATTCGT
1 CAAGTATTCGT
72112441 CAAGT
1 CAAGT
72112446 TGCTGAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (11 bp):
CAAGTATTCGT
Found at i:72119250 original size:28 final size:27
Alignment explanation
Indices: 72119193--72119344 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
72119183 TAAATTGTGC
* *
72119193 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
72119220 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
72119248 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72119275 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
72119303 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
72119330 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72119345 GACTTAATAA
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:72119258 original size:55 final size:55
Alignment explanation
Indices: 72119193--72119344 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
72119183 TAAATTGTGC
* *
72119193 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
72119248 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
72119303 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
72119345 GACTTAATAA
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:72122460 original size:20 final size:20
Alignment explanation
Indices: 72122432--72122469 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
72122422 CTAAGAACTA
72122432 TGTGATCTGAGCTCATGAGT
1 TGTGATCTGAGCTCATGAGT
* *
72122452 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGCTCATGA
72122470 TATATGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGCTCATGAGT
Found at i:72127106 original size:22 final size:22
Alignment explanation
Indices: 72127076--72127117 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
72127066 GTTTGTCAAT
*
72127076 GGAACAGGT-TGAAGAATGGAGA
1 GGAAAAGGTATGAAG-ATGGAGA
72127098 GGAAAAGGTATGAAGATGGA
1 GGAAAAGGTATGAAGATGGA
72127118 AGAAGAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.43, C:0.02, G:0.40, T:0.14
Consensus pattern (22 bp):
GGAAAAGGTATGAAGATGGAGA
Found at i:72129497 original size:38 final size:38
Alignment explanation
Indices: 72129450--72129522 Score: 137
Period size: 38 Copynumber: 1.9 Consensus size: 38
72129440 TTCAAAAAGA
*
72129450 TTGTTTAATTCTCATTCATCCTACTTTTACATTTTTGT
1 TTGTTTAATTCTCATTCACCCTACTTTTACATTTTTGT
72129488 TTGTTTAATTCTCATTCACCCTACTTTTACATTTT
1 TTGTTTAATTCTCATTCACCCTACTTTTACATTTT
72129523 GTCTGGCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.19, C:0.21, G:0.04, T:0.56
Consensus pattern (38 bp):
TTGTTTAATTCTCATTCACCCTACTTTTACATTTTTGT
Found at i:72131814 original size:21 final size:20
Alignment explanation
Indices: 72131784--72131822 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
72131774 TAAAACTTGT
72131784 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
72131804 ATAATCTATCATCAAACAT
1 ATAA-CTATCATCAAACAT
72131823 CAAAATACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:72133831 original size:28 final size:27
Alignment explanation
Indices: 72133765--72133849 Score: 84
Period size: 27 Copynumber: 3.1 Consensus size: 27
72133755 AGGAAGCGTC
* *
72133765 CTGGTGTCTATGCCACAATTATCTG-AT
1 CTGGTGACTCTGCCAC-ATTATCTGTAT
* *
72133792 CTGGTGGCTCTGCCACGATTTTCTGTAT
1 CTGGTGACTCTGCCAC-ATTATCTGTAT
* *
72133820 TTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGACTCTGCCACATTATCTGTAT
72133846 CTGG
1 CTGG
72133850 CAGCCATGCT
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
26 4 0.08
27 29 0.60
28 15 0.31
ACGTcount: A:0.15, C:0.22, G:0.22, T:0.40
Consensus pattern (27 bp):
CTGGTGACTCTGCCACATTATCTGTAT
Found at i:72141655 original size:28 final size:27
Alignment explanation
Indices: 72141590--72141674 Score: 111
Period size: 27 Copynumber: 3.1 Consensus size: 27
72141580 AGGAAGCGTC
*
72141590 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
72141617 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* *
72141645 CTGGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
72141671 CTGG
1 CTGG
72141675 CAGCCATGTT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.09
27 32 0.60
28 16 0.30
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:72147385 original size:23 final size:23
Alignment explanation
Indices: 72147355--72147398 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
72147345 CTAGAAGTAA
*
72147355 TGATTACTTATATAATAGTTTCT
1 TGATTACTTATAAAATAGTTTCT
*
72147378 TGATTACTTGTAAAATAGTTT
1 TGATTACTTATAAAATAGTTT
72147399 GGAGTATACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (23 bp):
TGATTACTTATAAAATAGTTTCT
Found at i:72150012 original size:26 final size:26
Alignment explanation
Indices: 72149983--72150090 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
72149973 TGGTACAAAT
72149983 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72150009 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72150035 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72150061 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72150087 TGAT
1 TGAT
72150091 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72158691 original size:20 final size:20
Alignment explanation
Indices: 72158668--72158716 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
72158658 AGAGGTATTG
*
72158668 AAGTGCAAACAGAGGCACCA
1 AAGTGCAAAAAGAGGCACCA
* * *
72158688 AAGTGTAAAAAGAGGCATCG
1 AAGTGCAAAAAGAGGCACCA
72158708 AAGTGCAAA
1 AAGTGCAAA
72158717 GCCCATACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.47, C:0.16, G:0.27, T:0.10
Consensus pattern (20 bp):
AAGTGCAAAAAGAGGCACCA
Found at i:72159759 original size:69 final size:69
Alignment explanation
Indices: 72159680--72159814 Score: 243
Period size: 69 Copynumber: 2.0 Consensus size: 69
72159670 AAGAATTTTT
*
72159680 TTTTTATGTTTTTATGTTTTAACTAATGTTTATAATTTTAATTAATTAACAAATACATTATTTTA
1 TTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTA
72159745 AATG
66 AATG
* *
72159749 TTTTTATGTTTTTATGTTTTAACTCATATTTATAATTTTAGTTAATTAACAAATACATTATTTTA
1 TTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTA
72159814 A
66 A
72159815 TTAAAACAAC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 63 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.56
Consensus pattern (69 bp):
TTTTTATGTTTTTATGTTTTAACTAATATTTATAATTTTAATTAATTAACAAATACATTATTTTA
AATG
Found at i:72160379 original size:338 final size:336
Alignment explanation
Indices: 72159781--72160414 Score: 1018
Period size: 338 Copynumber: 1.9 Consensus size: 336
72159771 CTCATATTTA
* * * *
72159781 TAATTTTAGTTAATTAACAAATACATTATTTTAATTAAAACAACATCAAATACCGTCCAGCAACC
1 TAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAAACATAAAATACCGTCCACCAACC
* ** * * *
72159846 TTAATAATGGCTTAATTGTCCCTGTAAATCCACTCCCATTTACTCACTAAATCATTTAATTAATA
66 TTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTACTCACTAAACCATTTAATAAATA
*
72159911 AAATTCAATAGTGATTAAGTTTTACATATTTTACGATTTAGTCATTTTTCTTTAATTAACTAACT
131 AAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGTCATTTTTCTTTAATTAACTAACT
* * *
72159976 AAGCGTTAAAATTTTCGAACCAAAACTCAACATATCAATGTAATAACTCCGCAAATATTTACTAA
196 AAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGTAATAACTCCGCAAATATCTACTAA
* * *
72160041 AAATATTTATAGGCTCATTTTTCATAAACGAGGTCTCACTTACATGATAATTGTTTTATGTTTTG
261 AAATATTTACAAGCTCAATTTTCATAAACGAGGTCTCACTTACATGATAATTGTTTTATGTTTTG
72160106 ACAATTGTTTT
326 ACAATTGTTTT
72160117 TAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAAAAAACATAAAATACCGTCCACCA
1 TAATTTTAATTAATTAACAAATACATTATTTTAATT---AAAAAAACATAAAATACCGTCCACCA
* * *
72160182 ACCTTTATAATGGCTTAAGTG-CCCCATAATTCCACTCACATTTACTCACTACACCATTTAATAA
63 ACCTTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTACTCACTAAACCATTTAATAA
* *
72160246 ATAAAATTCAATAATGATTAAGTTTTACATCTTTTACGATTTAGTCCTTTTTCTTTAATTAACTA
128 ATAAAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGTCATTTTTCTTTAATTAACTA
* *
72160311 GCTAAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGTAATAACTCCGTAAATATCTAC
193 ACTAAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGTAATAACTCCGCAAATATCTAC
72160376 TAAAAATATTTACAAGCTCAATTTTCATAAACGAGGTCT
258 TAAAAATATTTACAAGCTCAATTTTCATAAACGAGGTCT
72160415 TGACACCTCA
Statistics
Matches: 271, Mismatches: 24, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
336 35 0.13
338 194 0.72
339 42 0.15
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.37
Consensus pattern (336 bp):
TAATTTTAATTAATTAACAAATACATTATTTTAATTAAAAAAACATAAAATACCGTCCACCAACC
TTAATAATGGCTTAAGTGTCCCCATAAATCCACTCACATTTACTCACTAAACCATTTAATAAATA
AAATTCAATAATGATTAAGTTTTACATATTTTACGATTTAGTCATTTTTCTTTAATTAACTAACT
AAACGTTAAAATTTTCCAACCAAAACTCAACATATCAATGTAATAACTCCGCAAATATCTACTAA
AAATATTTACAAGCTCAATTTTCATAAACGAGGTCTCACTTACATGATAATTGTTTTATGTTTTG
ACAATTGTTTT
Found at i:72170958 original size:44 final size:43
Alignment explanation
Indices: 72170898--72171002 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 43
72170888 AATTATCGTA
* * * * *
72170898 TAAGACCGTGTTTGGGACACTGGCATCGAT-TTGAAATTTACGTG
1 TAAGACCATGTCTGGGACACAGGCATCGATACTG-AA-TTACATG
*
72170942 TAAGACCATGTCTGGGACAGAGGCATCGATACTGAATTACATG
1 TAAGACCATGTCTGGGACACAGGCATCGATACTGAATTACATG
*
72170985 TAAGACCACGTCTGGGAC
1 TAAGACCATGTCTGGGAC
72171003 GTCAGCATTG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 23 0.43
44 28 0.53
45 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACACAGGCATCGATACTGAATTACATG
Found at i:72175467 original size:57 final size:57
Alignment explanation
Indices: 72175397--72175576 Score: 265
Period size: 57 Copynumber: 3.1 Consensus size: 57
72175387 ATTTCCAAAT
72175397 CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
1 CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
* * * *
72175454 CATTTTCTTTTTCATTTAGGAGAAAACGATATTCATTTCTAAATGTTTCCATTTCTC
1 CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
* *
72175511 CATTTTCATTTTCATTTTA-GAGAAAACCATA-ACAATTTTCAAATGTTTATCATTTCTC
1 CATTTTCATTTTCA-TTTAGGAGAAAACCATATTC-ATTTCCAAATGTTT-TCATTTCTC
72175569 CATTTTCA
1 CATTTTCA
72175577 CAATTTCTAT
Statistics
Matches: 110, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
56 1 0.01
57 89 0.81
58 20 0.18
ACGTcount: A:0.29, C:0.18, G:0.07, T:0.46
Consensus pattern (57 bp):
CATTTTCATTTTCATTTAGGAGAAAACCATATTCATTTCCAAATGTTTTCATTTCTC
Found at i:72177452 original size:36 final size:37
Alignment explanation
Indices: 72177412--72177486 Score: 100
Period size: 37 Copynumber: 2.1 Consensus size: 37
72177402 ATTATATACC
* *
72177412 GAATGAAGTTC-AATGAGCGA-TATCCACCGATATATT
1 GAATGAAGCTCAAATGAGC-ATTATCCACCAATATATT
*
72177448 GAATGAAGCTCAAATGAGCATTATCCACTAATATATT
1 GAATGAAGCTCAAATGAGCATTATCCACCAATATATT
72177485 GA
1 GA
72177487 CTGGTGCTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 11 0.32
37 23 0.68
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (37 bp):
GAATGAAGCTCAAATGAGCATTATCCACCAATATATT
Found at i:72177473 original size:37 final size:36
Alignment explanation
Indices: 72177412--72177509 Score: 99
Period size: 37 Copynumber: 2.7 Consensus size: 36
72177402 ATTATATACC
* *
72177412 GAATGAAGTTCAATGAGCGATATCCACCGATATATT
1 GAATGAAGCTCAATGAGCGATATCCACCAATATATT
*
72177448 GAATGAAGCTCAAATGAGC-ATTATCCACTAATATATT
1 GAATGAAGCTC-AATGAGCGA-TATCCACCAATATATT
* ** *
72177485 GACTGGTGCTCAAACGAGCGATATC
1 GAATGAAGCTC-AATGAGCGATATC
72177510 AATTATGTGC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
36 11 0.21
37 40 0.77
38 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (36 bp):
GAATGAAGCTCAATGAGCGATATCCACCAATATATT
Found at i:72177557 original size:40 final size:40
Alignment explanation
Indices: 72177513--72177710 Score: 234
Period size: 40 Copynumber: 5.0 Consensus size: 40
72177503 CGATATCAAT
*
72177513 TATGTGCTTTTGAGCCATACCTACTGAATCTACTAAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * * *
72177553 TATGTGCTTTCGAGCCCTGCCTTCTGAATCTACTGAAACA
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* *
72177593 TATGTGCTTTCGAGCCATACCTACTGAATCTGCTGAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * * *
72177633 TATGCGCTTTTGAGCCATACCTACCGATTCCATTGAAACG
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
* * * **
72177673 TATGCGCTATTGAGCCTTACCTACTGCTTCTACTGAAA
1 TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAA
72177711 GCATGCTTTA
Statistics
Matches: 134, Mismatches: 24, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (40 bp):
TATGTGCTTTTGAGCCATACCTACTGAATCTACTGAAACG
Found at i:72182091 original size:19 final size:19
Alignment explanation
Indices: 72182067--72182104 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
72182057 GTATGTTGTG
72182067 TTTAAATTTATACAAACTT
1 TTTAAATTTATACAAACTT
*
72182086 TTTAAATTTATACGAACTT
1 TTTAAATTTATACAAACTT
72182105 ACTAAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (19 bp):
TTTAAATTTATACAAACTT
Found at i:72183572 original size:74 final size:75
Alignment explanation
Indices: 72183450--72183602 Score: 193
Period size: 74 Copynumber: 2.1 Consensus size: 75
72183440 AAAGGGCCAT
* *
72183450 GGCCCCCTAAGGTTTAAATTTTTTTTCAATTTAGCCCTTTGTAGATATACTATGGCCCACCCAAA
1 GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
* *
72183515 AATATATGTA
66 AATACAAGTA
**** * *
72183525 GGCCCCCTAAGGTTTAAGA-TTTTTGT-AATTTTTTTCTTTGTATATATACTATAGCCCTCCCAA
1 GGCCCCCTAAGGTTTAA-ATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAA
72183588 AAATACAAGTA
65 AAATACAAGTA
72183599 GGCC
1 GGCC
72183603 ATTCCAATAT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
74 43 0.64
75 23 0.34
76 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.37
Consensus pattern (75 bp):
GGCCCCCTAAGGTTTAAATTTTTTGTCAATTTAGCCCTTTGTAGATATACTATAGCCCACCCAAA
AATACAAGTA
Found at i:72191661 original size:28 final size:29
Alignment explanation
Indices: 72191616--72191670 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
72191606 CAAAAAATAT
*
72191616 TTTATATATATATTTATT-ATTTAAATGG
1 TTTATATATATATTTATTGATTAAAATGG
*
72191644 TTTATTTATAT-TTATATTGATTAAAAT
1 TTTATATATATATT-TATTGATTAAAAT
72191671 ACAATTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 2 0.09
28 14 0.61
29 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.58
Consensus pattern (29 bp):
TTTATATATATATTTATTGATTAAAATGG
Found at i:72192086 original size:29 final size:28
Alignment explanation
Indices: 72192036--72192104 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 28
72192026 TTAGTTGGTA
* *
72192036 AAGGTTAAGGGTTATGGATTATGGGTTT
1 AAGGTTAAAGGTCATGGATTATGGGTTT
*
72192064 AAGGATTAAAGGTCATGGGTTATGGGTTT
1 AAGG-TTAAAGGTCATGGATTATGGGTTT
72192093 AATGGTTAAAGG
1 AA-GGTTAAAGG
72192105 GATAGGGGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.11
29 30 0.83
30 2 0.06
ACGTcount: A:0.29, C:0.01, G:0.35, T:0.35
Consensus pattern (28 bp):
AAGGTTAAAGGTCATGGATTATGGGTTT
Found at i:72192213 original size:21 final size:22
Alignment explanation
Indices: 72192160--72192215 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
72192150 ATGGGAAAAG
72192160 GGTTTATGGTTTATGAGTTAAT
1 GGTTTATGGTTTATGAGTTAAT
* * *
72192182 GTTTTAAGGTTTA-GAGATT-TT
1 GGTTTATGGTTTATGAG-TTAAT
72192203 GGTTTATGGTTTA
1 GGTTTATGGTTTA
72192216 AGGGTTGGGG
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.21, C:0.00, G:0.27, T:0.52
Consensus pattern (22 bp):
GGTTTATGGTTTATGAGTTAAT
Found at i:72192227 original size:14 final size:15
Alignment explanation
Indices: 72192210--72192242 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
72192200 TTTGGTTTAT
72192210 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
72192224 GGTTTAAGGTTTAGG
1 GGTTTAAGGGTTAGG
72192239 GGTT
1 GGTT
72192243 ACTAGATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.00, G:0.45, T:0.39
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:72192227 original size:21 final size:21
Alignment explanation
Indices: 72192203--72192242 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
72192193 TAGAGATTTT
*
72192203 GGTTTATGGTTTAAGGGTTGG
1 GGTTTAAGGTTTAAGGGTTGG
*
72192224 GGTTTAAGGTTTAGGGGTT
1 GGTTTAAGGTTTAAGGGTT
72192243 ACTAGATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.00, G:0.42, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAGGGTTGG
Found at i:72192738 original size:26 final size:26
Alignment explanation
Indices: 72192709--72192842 Score: 232
Period size: 26 Copynumber: 5.2 Consensus size: 26
72192699 TGGTACAAAT
*
72192709 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
72192735 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72192761 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72192787 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
72192813 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
72192839 TGAT
1 TGAT
72192843 GGGCATTTCA
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 102 1.00
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:72195710 original size:26 final size:27
Alignment explanation
Indices: 72195644--72195711 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
72195634 TAAAATTTTA
72195644 AAGATTTCAAA-TTTAGAATAAATTTC
1 AAGATTTCAAATTTTAGAATAAATTTC
*
72195670 AAGATTTCAAATTTTA-AATAATTTTC
1 AAGATTTCAAATTTTAGAATAAATTTC
**
72195696 ATTATTTCAAATTTTA
1 AAGATTTCAAATTTTA
72195712 TCTAATTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 34 0.89
27 4 0.11
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.46
Consensus pattern (27 bp):
AAGATTTCAAATTTTAGAATAAATTTC
Found at i:72199394 original size:10 final size:10
Alignment explanation
Indices: 72199379--72199406 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
72199369 TTCAATCAAG
72199379 GTATGAATAA
1 GTATGAATAA
72199389 GTATGAATAA
1 GTATGAATAA
72199399 GTATGAAT
1 GTATGAAT
72199407 TAATTTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.21, T:0.32
Consensus pattern (10 bp):
GTATGAATAA
Found at i:72199859 original size:244 final size:244
Alignment explanation
Indices: 72199426--72199979 Score: 1063
Period size: 244 Copynumber: 2.3 Consensus size: 244
72199416 TACCATGTAC
72199426 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
* *
72199491 AAGATTCAAAGTATATAGGTTGGAAACCTGACGGGTTGCCTTATATCGAGTTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
72199556 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
131 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
72199621 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
72199670 CTTTCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
72199735 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
66 AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
*
72199800 GATCCTCCTTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
131 GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
72199865 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
196 AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
*
72199914 CTTGCTTGTCCATTAAAATTACAACAATAGCCGACCTTCTCTCCAACCTTATTTTAAATATTTTA
1 CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
72199979 A
66 A
72199980 TCTAATAATT
Statistics
Matches: 304, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
244 304 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (244 bp):
CTTGCTTGTCCATTAAAATTACAACAATAGCTGACCTTCTCTCCAACCTTATTTTAAATATTTTA
AAGATTCAAAGTATATAGGCTGGAAACCTGACGGGTTGCCTTATATCGAGCTGTAAGATATAATG
GATCCTCCCTAGGTGTAACAACGCCACGTATGATGAATCTTAAAAAATTCAAAAAGACTTGAAAA
AAGTTCTATCGAGCTCATTTACTATTGAATATTTATATAACCTTAATAG
Found at i:72205510 original size:21 final size:21
Alignment explanation
Indices: 72205484--72205527 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
72205474 TCAAATTAGA
72205484 GCGGAGGCAGCAGCGCAG-GAG
1 GCGGAGGCAGCAGCG-AGAGAG
72205505 GCGGAGGCAGCAGCGAGAGAG
1 GCGGAGGCAGCAGCGAGAGAG
72205526 GC
1 GC
72205528 AGAGCAGAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.25, C:0.23, G:0.52, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGAGAG
Found at i:72209343 original size:16 final size:17
Alignment explanation
Indices: 72209322--72209367 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
72209312 AGAATTAGTG
72209322 AAAAAAAAGTGAAAT-T
1 AAAAAAAAGTGAAATAT
*
72209338 AAAAAAAATTCG-AATAT
1 AAAAAAAAGT-GAAATAT
72209355 AAAAAAAAG-GAAA
1 AAAAAAAAGTGAAA
72209368 AAAAGTGTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 1 0.04
16 14 0.56
17 10 0.40
ACGTcount: A:0.72, C:0.02, G:0.11, T:0.15
Consensus pattern (17 bp):
AAAAAAAAGTGAAATAT
Found at i:72210230 original size:13 final size:14
Alignment explanation
Indices: 72210212--72210248 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
72210202 AACCGCTTGT
*
72210212 AAAAGAAAATGA-G
1 AAAAGAAAAAGATG
72210225 AAAAGAAAAAGATG
1 AAAAGAAAAAGATG
72210239 AAAAGAAAAA
1 AAAAGAAAAA
72210249 AGAGATCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (14 bp):
AAAAGAAAAAGATG
Found at i:72210241 original size:14 final size:13
Alignment explanation
Indices: 72210212--72210253 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
72210202 AACCGCTTGT
*
72210212 AAAAGAAAATGAG
1 AAAAGAAAAAGAG
72210225 AAAAGAAAAAGATG
1 AAAAGAAAAAGA-G
72210239 AAAAGAAAAAAGAG
1 AAAAG-AAAAAGAG
72210253 A
1 A
72210254 TCAAAAGACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 11 0.42
14 8 0.31
15 7 0.27
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (13 bp):
AAAAGAAAAAGAG
Found at i:72210384 original size:12 final size:12
Alignment explanation
Indices: 72210367--72210404 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
72210357 AAAACAAATT
72210367 GAGATTGAAAAA
1 GAGATTGAAAAA
*
72210379 GAGATTGACAAA
1 GAGATTGAAAAA
*
72210391 GAGAATGAAAAA
1 GAGATTGAAAAA
72210403 GA
1 GA
72210405 AAAAGAGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.58, C:0.03, G:0.26, T:0.13
Consensus pattern (12 bp):
GAGATTGAAAAA
Found at i:72213413 original size:26 final size:26
Alignment explanation
Indices: 72213383--72213432 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
72213373 TCACATTGTA
72213383 TGCCCATTGGAGTTTC-TTCATTCATC
1 TGCCCATTGGAG-TTCATTCATTCATC
*
72213409 TGCCCATTGGTGTTCATTCATTCA
1 TGCCCATTGGAGTTCATTCATTCA
72213433 CATCATTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.16, C:0.26, G:0.16, T:0.42
Consensus pattern (26 bp):
TGCCCATTGGAGTTCATTCATTCATC
Found at i:72222746 original size:34 final size:34
Alignment explanation
Indices: 72222617--72222751 Score: 110
Period size: 34 Copynumber: 3.8 Consensus size: 34
72222607 ATAAAGTTTT
* * * * *
72222617 GGGCCTAAGCCCTTTTCAGTATCAGTA-ACAGTTT
1 GGGCCTTAGCCCATTACAGTATCAGTATGCA-TTA
* *
72222651 GGGCCTTAGCCCATCTCAATACAGTATCAAATATGCAGTA
1 GGGCCTTAGCCCA--T---TACAGTATC-AGTATGCATTA
* *
72222691 GGGCCTTAGCCCATCATAGTATCAGTATGCATTA
1 GGGCCTTAGCCCATTACAGTATCAGTATGCATTA
*
72222725 GGGCCTTAGCCCATTACAGTATTAGTA
1 GGGCCTTAGCCCATTACAGTATCAGTA
72222752 GCAATCGTGC
Statistics
Matches: 80, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
34 44 0.55
35 7 0.09
36 1 0.01
38 1 0.01
39 8 0.10
40 17 0.21
41 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (34 bp):
GGGCCTTAGCCCATTACAGTATCAGTATGCATTA
Found at i:72242025 original size:27 final size:27
Alignment explanation
Indices: 72241995--72242172 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
72241985 ATATTGAGCC
* *
72241995 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
72242022 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
72242049 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
72242077 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
72242104 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
72242131 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
72242158 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
72242173 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:72242134 original size:82 final size:81
Alignment explanation
Indices: 72242016--72242171 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
72242006 TGCTATATAA
* * * *
72242016 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTC-GAATCGCA
72242081 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
72242098 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCA
72242162 CACTTAGTGC
65 CACTTAGTGC
72242172 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:72244804 original size:40 final size:39
Alignment explanation
Indices: 72244724--72244904 Score: 186
Period size: 40 Copynumber: 4.5 Consensus size: 39
72244714 ATGATGTCCA
* * * *
72244724 GGCTAAGTCCGTAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCG-AAGGCATTTGTGC-GAGTTACTAAATCCG
* * *
72244764 GACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
72244804 GGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAAATCCG
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
72244843 GGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CCG
1 GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
72244883 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGT-CCGAAGGCATTTG
72244905 AACGAGTAGC
Statistics
Matches: 118, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
39 34 0.29
40 71 0.60
41 13 0.11
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:72244935 original size:79 final size:79
Alignment explanation
Indices: 72244759--72244937 Score: 195
Period size: 79 Copynumber: 2.3 Consensus size: 79
72244749 AAGTGACCAT
* * *
72244759 ATCCGGACTAAGA-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGATTAA-ATTCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
**
72244823 TGCGCGAGTTACTAA
65 TGAACGAGTTACTAA
* * * * *
72244838 ATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGATTAAATTCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
72244902 TTGAACGAG-TAGCTAT
64 TTGAACGAGTTA-CTAA
72244918 ATCC-GATTAAATTCCGAAGG
1 ATCCGGATTAAATTCCGAAGG
72244938 TACGTGATTT
Statistics
Matches: 82, Mismatches: 14, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
78 2 0.02
79 55 0.67
80 25 0.30
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
ATCCGGATTAAATTCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTT
GAACGAGTTACTAA
Found at i:72252760 original size:39 final size:40
Alignment explanation
Indices: 72252663--72252843 Score: 174
Period size: 40 Copynumber: 4.5 Consensus size: 40
72252653 ATGATGTCCA
* * *
72252663 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TCCG
* *
72252703 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* *
72252743 GGCTAAG-CCCGAAGGCATTTGCGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
* * * *
72252782 AGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCG
* *
72252822 GGCTATGTCCCAAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
72252844 AACGAGTAGC
Statistics
Matches: 115, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
39 34 0.30
40 71 0.62
41 10 0.09
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCG
Found at i:72252866 original size:79 final size:79
Alignment explanation
Indices: 72252712--72252876 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
72252702 GGACTAAGAT
* * * **
72252712 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGCGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
*
72252777 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* *
72252791 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTTGAACGAGTTA-C
* *
72252854 TATATCCG-GTTAAATT
63 TAAATCCGAGTTAAATC
72252870 CCGAAGG
1 CCGAAGG
72252877 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.63
80 25 0.34
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTTGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:72261598 original size:38 final size:38
Alignment explanation
Indices: 72261534--72261843 Score: 460
Period size: 38 Copynumber: 8.1 Consensus size: 38
72261524 ATTTGATGTG
* * *
72261534 TATCCGGGCTTAAAGACCCGCGGGCTTCGTGCTAGTAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
72261574 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
72261612 TAT-CGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAATA
72261651 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
72261689 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
*
72261727 TATCCGGGTTAAATCTCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
72261765 TATCCGGGTTAAATCCCGTAAGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * * *
72261803 TATCCGGGTTAAATCCCGCAGGCCTAGTACTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
72261841 TAT
1 TAT
72261844 TCAGGCCTTT
Statistics
Matches: 250, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
37 4 0.02
38 198 0.79
39 36 0.14
40 12 0.05
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Found at i:72261896 original size:45 final size:45
Alignment explanation
Indices: 72261840--72261971 Score: 157
Period size: 45 Copynumber: 3.0 Consensus size: 45
72261830 TACTGGTATT
* * * *
72261840 ATATTCAGGCCTTTGAGCCTAGCAGGCTATTATGTCGGTGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
*
72261884 ACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
1 A-TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
* *
72261930 ATA-TCGAGCC-TTGAGCCTAGCAGGCGA-AATGCCGGTGA-ATG
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
72261971 A
1 A
72261972 ATAAAAGTCT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
41 4 0.05
42 11 0.14
43 15 0.19
44 7 0.09
45 40 0.51
46 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
Found at i:72267362 original size:38 final size:38
Alignment explanation
Indices: 72267317--72267649 Score: 531
Period size: 38 Copynumber: 8.7 Consensus size: 38
72267307 GGCTTAAAGA
*
72267317 CCCGCAGGCTTCGTGCTGGTAATATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
72267355 CCCGCAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
*
72267393 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGCTTAAAGA
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGG-TTAAA-T
* *
72267433 CCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
72267471 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
72267509 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
72267547 CCCGTAGGCTTCATGCTGGTAATATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* *
72267585 CCCGCAGGCTTCGTGCTGGCATTATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
* * * *
72267623 CCCGCAGGCCTAGTACTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTAATATAT
72267650 TCAGGCCTTT
Statistics
Matches: 274, Mismatches: 19, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
38 234 0.85
39 10 0.04
40 30 0.11
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAAT
Found at i:72267510 original size:116 final size:116
Alignment explanation
Indices: 72267301--72267649 Score: 558
Period size: 116 Copynumber: 3.0 Consensus size: 116
72267291 ATTTGATGTG
* *
72267301 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGAGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
*
72267366 CATGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* *
72267417 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
72267482 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
* * *
72267533 TATCCGGG-TTAAA-TCCCGTAGGCTTCATGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
* * * * * *
72267596 CGTGCTGGCATTATATCCGGGTTAAATCCCGCAGGCCTAGTACTGGTATTA
66 CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
72267647 TAT
1 TAT
72267650 TCAGGCCTTT
Statistics
Matches: 217, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
114 93 0.43
115 5 0.02
116 119 0.55
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (116 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTT
CGTGCTGGTAATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATA
Done.