Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 227 of 295
Found at i:72541492 original size:19 final size:20
Alignment explanation
Indices: 72541468--72541505 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72541458 GGTACCACCA
72541468 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
72541487 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
72541506 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:72547219 original size:50 final size:50
Alignment explanation
Indices: 72547093--72547383 Score: 338
Period size: 50 Copynumber: 5.9 Consensus size: 50
72547083 CAAAGCTATG
* * *
72547093 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATG-GACC-AATTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC
* * *
72547141 CGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATCATG
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC
* * * *
72547191 TGATACACGTAGTAGACTGCACTTAGTACTACACACGTGATCGAAGTTATC
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATC
* * * * * *
72547242 GGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACC-AATTAT-
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC
* **
72547290 TCGGTACACGTAGTAGCCTGCACTTAGTACCACACACGTGACCTAACCATC
1 T-GGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC
** *
72547341 TAATACACGTAGTAGTCTGCACTTAGTACTACACACGTGACCT
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCT
72547384 CAAAATAGAT
Statistics
Matches: 202, Mismatches: 35, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
48 33 0.16
49 43 0.21
50 89 0.44
51 37 0.18
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATC
Found at i:72547328 original size:150 final size:149
Alignment explanation
Indices: 72547094--72547380 Score: 502
Period size: 150 Copynumber: 1.9 Consensus size: 149
72547084 AAAGCTATGT
72547094 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGGACCAATTATCCGGTACACGTAGTAGCCT
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGGACCAATTATCCGGTACACGTAGTAGCCT
* * * *
72547159 GCACTTAGTACTACACACGTGACCTAATCATGTGATACACGTAGTAGACTGCACTTAGTACTACA
66 GCACTTAGTACCACACACGTGACCTAACCATCTAATACACGTAGTAGACTGCACTTAGTACTACA
72547224 CACGTGATCGAAGTTATCG
131 CACGTGATCGAAGTTATCG
* *
72547243 GGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATG-GACCAATTATCCGGTACACGTAGTAGCC
*
72547308 TGCACTTAGTACCACACACGTGACCTAACCATCTAATACACGTAGTAGTCTGCACTTAGTACTAC
65 TGCACTTAGTACCACACACGTGACCTAACCATCTAATACACGTAGTAGACTGCACTTAGTACTAC
72547373 ACACGTGA
130 ACACGTGA
72547381 CCTCAAAATA
Statistics
Matches: 130, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
149 35 0.27
150 95 0.73
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (149 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGGACCAATTATCCGGTACACGTAGTAGCCT
GCACTTAGTACCACACACGTGACCTAACCATCTAATACACGTAGTAGACTGCACTTAGTACTACA
CACGTGATCGAAGTTATCG
Found at i:72551598 original size:43 final size:43
Alignment explanation
Indices: 72551551--72551648 Score: 117
Period size: 43 Copynumber: 2.3 Consensus size: 43
72551541 TGTGATTATG
** * * **
72551551 TGTAAGACCATGTCT-GGGACATTGGCATCGTTATTTGATTTCA
1 TGTAAGACCATAACTAGGG-CATTGGCATCGATATATGATAACA
*
72551594 TGTAAGACCATAACTAGGGTATTGGCATCGATATATGATAACA
1 TGTAAGACCATAACTAGGGCATTGGCATCGATATATGATAACA
72551637 TGTAAGACCATA
1 TGTAAGACCATA
72551649 TTTGGGATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 44 0.94
44 3 0.06
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATAACTAGGGCATTGGCATCGATATATGATAACA
Found at i:72552784 original size:65 final size:66
Alignment explanation
Indices: 72552675--72552821 Score: 235
Period size: 65 Copynumber: 2.2 Consensus size: 66
72552665 AGGCCGTCTG
*
72552675 TGACACATGGGCGTGTGGCCAGCTGTGTGACCTAAGTCAATATACCCTCCATATTTTACACGGGC
1 TGACACATGGGCGTGTGGCCAGCTGTGTGACCTAAGTCAATATACCCTCCATATTTTACACGGCC
72552740 -
66 A
* *
72552740 TGGCACATGGGCGTGTGGCCGGCTGTGTGACCTAAGT-AAGTATACCCTCCATATTTTACACGGC
1 TGACACATGGGCGTGTGGCCAGCTGTGTGACCTAAGTCAA-TATACCCTCCATATTTTACACGGC
72552804 CA
65 CA
*
72552806 TGACACATGAGCGTGT
1 TGACACATGGGCGTGT
72552822 CTCTGGCCAT
Statistics
Matches: 75, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
64 2 0.03
65 59 0.79
66 14 0.19
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (66 bp):
TGACACATGGGCGTGTGGCCAGCTGTGTGACCTAAGTCAATATACCCTCCATATTTTACACGGCC
A
Found at i:72556501 original size:46 final size:46
Alignment explanation
Indices: 72556138--72556504 Score: 432
Period size: 46 Copynumber: 8.0 Consensus size: 46
72556128 TTATCTTCGA
* * * * * *
72556138 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATCTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT-TTCATAT
* *** *
72556184 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* ** ** ***
72556230 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
72556275 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACAAATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
72556321 CCTGTTGCCATGATATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* * * *
72556367 CATGTTGCTATGGTGTCCTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
** *
72556413 CCCGTTGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
72556459 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
72556505 TCTAATGCAT
Statistics
Matches: 275, Mismatches: 44, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
45 40 0.15
46 235 0.85
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:72562545 original size:22 final size:24
Alignment explanation
Indices: 72562476--72562545 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
72562466 GCATACCAGT
* *
72562476 GTATGAAAACCCTTTGTGTAGGAC
1 GTATGAAAGCCCTTTATGTAGGAC
*
72562500 GTTTGAAAGCCCTTTATGTAGGAC
1 GTATGAAAGCCCTTTATGTAGGAC
*
72562524 GTATGAGAGCCC-TTA-GTAGGAC
1 GTATGAAAGCCCTTTATGTAGGAC
72562546 AAATGGAAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
22 7 0.17
23 3 0.07
24 31 0.76
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (24 bp):
GTATGAAAGCCCTTTATGTAGGAC
Found at i:72562650 original size:27 final size:27
Alignment explanation
Indices: 72562597--72562777 Score: 132
Period size: 27 Copynumber: 6.7 Consensus size: 27
72562587 AGTCCATCTG
* * * *
72562597 GACTATCTACTATGGAAAGCTCATCAA
1 GACTATCTAATGTGGAAAGCCCGTCAA
*
72562624 AACTATCTAATGTGGAAAGCCCGTCAA
1 GACTATCTAATGTGGAAAGCCCGTCAA
* * * * *
72562651 GAGTATCCAATGTGAAAAGTCTGTCAA
1 GACTATCTAATGTGGAAAGCCCGTCAA
* **
72562678 GACTATCTAATGTGGAAAACCTTTCAA
1 GACTATCTAATGTGGAAAGCCCGTCAA
* * * *
72562705 GACCATCTAATGT-AAGAAGTCTGTCAA
1 GACTATCTAATGTGGA-AAGCCCGTCAA
* * *
72562732 GACTATCTAATATGTGG-AGGTCCGTCAG
1 GACTATCT-A-ATGTGGAAAGCCCGTCAA
*
72562760 GACTATCTTATGTGGAAA
1 GACTATCTAATGTGGAAA
72562778 TCTATGTGGA
Statistics
Matches: 120, Mismatches: 29, Indels: 10
0.75 0.18 0.06
Matches are distributed among these distances:
26 7 0.06
27 92 0.77
28 17 0.14
29 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
GACTATCTAATGTGGAAAGCCCGTCAA
Found at i:72562717 original size:54 final size:54
Alignment explanation
Indices: 72562620--72562742 Score: 167
Period size: 54 Copynumber: 2.3 Consensus size: 54
72562610 GGAAAGCTCA
* * **
72562620 TCAAAACTATCTAATGTGGAAAGCCCGTCAAGAGTATCCAATGTGAA-AAGTCTG
1 TCAAGACTATCTAATGTGGAAAACCCGTCAAGACCATCCAATGT-AAGAAGTCTG
** *
72562674 TCAAGACTATCTAATGTGGAAAACCTTTCAAGACCATCTAATGTAAGAAGTCTG
1 TCAAGACTATCTAATGTGGAAAACCCGTCAAGACCATCCAATGTAAGAAGTCTG
72562728 TCAAGACTATCTAAT
1 TCAAGACTATCTAAT
72562743 ATGTGGAGGT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.03
54 59 0.97
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (54 bp):
TCAAGACTATCTAATGTGGAAAACCCGTCAAGACCATCCAATGTAAGAAGTCTG
Found at i:72566711 original size:27 final size:27
Alignment explanation
Indices: 72566678--72566894 Score: 281
Period size: 27 Copynumber: 8.0 Consensus size: 27
72566668 AAACATACAT
*
72566678 CACATAAGAGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
72566705 CATATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * * *
72566732 CACATAAGGGAAAAATAGTTATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
72566759 CACACAAGGGCGAAACAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
72566786 CACATAAGGGCAAAACAGTTATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
* *
72566813 CACATAAGGGCAAAACAATCATTTTGC
1 CACATAAGGGCAAAACAGTCATTTTAC
*
72566840 CACATAAGGGCAAAACAATCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
* * *
72566867 CCCATAAAGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAACAGTCATTTTAC
72566894 C
1 C
72566895 GATTAGGGTC
Statistics
Matches: 166, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATTTTAC
Found at i:72569109 original size:15 final size:16
Alignment explanation
Indices: 72569076--72569109 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
72569066 CCAACCCTAA
*
72569076 AAAGTGAAAAGAGAAG
1 AAAGTCAAAAGAGAAG
72569092 AAAGTCAAAAGA-AAG
1 AAAGTCAAAAGAGAAG
72569107 AAA
1 AAA
72569110 TGAGGGGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.68, C:0.03, G:0.24, T:0.06
Consensus pattern (16 bp):
AAAGTCAAAAGAGAAG
Found at i:72588325 original size:27 final size:27
Alignment explanation
Indices: 72588265--72588397 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
72588255 GGGTAAGCAG
72588265 CCACATAAGGGCAAAATAGTCA-TTTA
1 CCACATAAGGGCAAAATAGTCATTTTA
* * *
72588291 CCATATAAGGGCAAAACAATCATTTTA
1 CCACATAAGGGCAAAATAGTCATTTTA
* * *
72588318 CCATATAAGGGCAAAATAGTTACTTTA
1 CCACATAAGGGCAAAATAGTCATTTTA
*
72588345 CCACATAAGGGAAAAATAGTCATTTTA
1 CCACATAAGGGCAAAATAGTCATTTTA
* *
72588372 CCACATAAGGGTAAAACAGTCATTTT
1 CCACATAAGGGCAAAATAGTCATTTT
72588398 CTCAATTTTG
Statistics
Matches: 93, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 19 0.20
27 74 0.80
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (27 bp):
CCACATAAGGGCAAAATAGTCATTTTA
Found at i:72588542 original size:17 final size:18
Alignment explanation
Indices: 72588517--72588556 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
72588507 CATAATGCGG
72588517 GCCCATGTGGCCCACAT-
1 GCCCATGTGGCCCACATA
*
72588534 GCCCGTGTGGCCCACATA
1 GCCCATGTGGCCCACATA
72588552 GCCCA
1 GCCCA
72588557 GAAATGGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.17, C:0.42, G:0.25, T:0.15
Consensus pattern (18 bp):
GCCCATGTGGCCCACATA
Found at i:72591353 original size:46 final size:46
Alignment explanation
Indices: 72591303--72591478 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
72591293 TGGTTGAGCA
72591303 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72591349 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
72591394 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
72591442 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72591479 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:72591459 original size:93 final size:93
Alignment explanation
Indices: 72591300--72591471 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
72591290 GGATGGTTGA
* *
72591300 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72591365 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
72591393 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72591458 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
72591472 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72595299 original size:40 final size:40
Alignment explanation
Indices: 72595268--72595398 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
72595258 GGACTAAGAT
72595268 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* * *
72595308 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
* *
72595348 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
72595388 CCGAAGGCATT
1 CCGAAGGCATT
72595399 GTATGAGTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 1 0.01
40 81 0.99
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
Found at i:72595355 original size:80 final size:81
Alignment explanation
Indices: 72595222--72595395 Score: 225
Period size: 80 Copynumber: 2.2 Consensus size: 81
72595212 CTGTCTGGGC
* *
72595222 TAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGA
*
72595286 GTTATT-AATTCCGGGT
66 GTT-TTAAAATCCGGGT
**
72595302 TAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGCATTCGTG
1 TAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGCATTCGTG
72595363 CGAGTTTTAAAATCCGGGT
63 CGAGTTTTAAAATCCGGGT
72595382 TAAGTCCCGAAGGC
1 TAAGTCCCGAAGGC
72595396 ATTGTATGAG
Statistics
Matches: 84, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
79 4 0.05
80 71 0.85
81 9 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (81 bp):
TAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATTCGTGCGA
GTTTTAAAATCCGGGT
Found at i:72602183 original size:93 final size:92
Alignment explanation
Indices: 72602025--72602195 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 92
72602015 GGATGGTTGA
* *
72602025 GCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTT
1 GCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
72602090 GAGTCCGAGTTCGTGAGATGTAACTAG
66 GAGTCCGAGTTCGTGAGATGTAACTAG
*
72602117 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
72602182 TGAGTCCGAGTTCG
65 TGAGTCCGAGTTCG
72602196 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 20 0.27
93 55 0.73
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72602193 original size:46 final size:46
Alignment explanation
Indices: 72602029--72602202 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
72602019 GGTTGAGCAT
* *
72602029 CCGAACTCGTTGAGTT-AGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* * *
72602074 CCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC
72602119 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
* *
72602167 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
72602203 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 10, Indels: 19
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 19 0.17
46 45 0.41
47 28 0.26
48 4 0.04
50 4 0.04
51 3 0.03
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
Found at i:72604517 original size:13 final size:13
Alignment explanation
Indices: 72604499--72604523 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72604489 TGTGTGATAT
72604499 GTGTGAAAATTTC
1 GTGTGAAAATTTC
72604512 GTGTGAAAATTT
1 GTGTGAAAATTT
72604524 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:72605791 original size:43 final size:42
Alignment explanation
Indices: 72605700--72605798 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 42
72605690 AGACCCTATT
* **
72605700 TGGGACATTGGCATCATATATGATTTCATGTAAGACCATGTC
1 TGGGACATTGGCATCATATATGATTACATGTAAGACCATACC
* *
72605742 TAGGACATTGGCATCGATATTTGATTACATGTAAGACC-TCACC
1 TGGGACATTGGCATC-ATATATGATTACATGTAAGACCAT-ACC
72605785 TGGGACATTGGCAT
1 TGGGACATTGGCAT
72605799 TGTATGAGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 15 0.31
43 34 0.69
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31
Consensus pattern (42 bp):
TGGGACATTGGCATCATATATGATTACATGTAAGACCATACC
Found at i:72608360 original size:110 final size:110
Alignment explanation
Indices: 72608167--72608385 Score: 411
Period size: 110 Copynumber: 2.0 Consensus size: 110
72608157 CAAAGGCTAT
72608167 TGAGAGCTATTCTAGACGGGATCAAAACAAACCGCCTGTGAGTTCAAAAGCCACTTCTATAGCTA
1 TGAGAGCTATTCTAGACGGGATCAAAACAAACCGCCTGTGAGTTCAAAAGCCACTTCTATAGCTA
*
72608232 GTGTCGGTAATGTCAGACTAAATCAACTGAGTGCAAGCATTGCAC
66 GTGTCAGTAATGTCAGACTAAATCAACTGAGTGCAAGCATTGCAC
*
72608277 TGAGAGCTATTCTAGACGGGATCGAAACAAACCGCCTGTGAGTTCAAAAGCCACTTCTATAGCTA
1 TGAGAGCTATTCTAGACGGGATCAAAACAAACCGCCTGTGAGTTCAAAAGCCACTTCTATAGCTA
*
72608342 GTGTCAGTAATGTCAGACTAAATCAATTGAGTGCAAGCATTGCA
66 GTGTCAGTAATGTCAGACTAAATCAACTGAGTGCAAGCATTGCA
72608386 GTAAATGACA
Statistics
Matches: 106, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
110 106 1.00
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (110 bp):
TGAGAGCTATTCTAGACGGGATCAAAACAAACCGCCTGTGAGTTCAAAAGCCACTTCTATAGCTA
GTGTCAGTAATGTCAGACTAAATCAACTGAGTGCAAGCATTGCAC
Found at i:72609697 original size:15 final size:15
Alignment explanation
Indices: 72609677--72609706 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72609667 TCTTGTCGAA
72609677 TAGGCATTCTCATTT
1 TAGGCATTCTCATTT
*
72609692 TAGGCATTCTTATTT
1 TAGGCATTCTCATTT
72609707 CTTTCTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (15 bp):
TAGGCATTCTCATTT
Found at i:72610822 original size:27 final size:27
Alignment explanation
Indices: 72610787--72610848 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
72610777 AGACCTTGTT
*
72610787 TGTAGAATTACCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
72610814 TGTAAAATTATCGAAATACCCTTGTAG
1 TGTAAAATTACCGAAATACCCTTGTAG
*
72610841 AGTAAAAT
1 TGTAAAAT
72610849 GACTATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCGAAATACCCTTGTAG
Found at i:72611677 original size:28 final size:28
Alignment explanation
Indices: 72611637--72611692 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
72611627 CTGATTCTGA
* *
72611637 TACTGTATTGGGCTTAA-GCCTACACTGT
1 TACTATATTGGGC-TAAGGCCCACACTGT
72611665 TACTATATTGGGCTAAGGCCCACACTGT
1 TACTATATTGGGCTAAGGCCCACACTGT
72611693 GCTGTTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (28 bp):
TACTATATTGGGCTAAGGCCCACACTGT
Found at i:72616542 original size:44 final size:44
Alignment explanation
Indices: 72616482--72616604 Score: 165
Period size: 44 Copynumber: 2.8 Consensus size: 44
72616472 CAATATGTGA
* *
72616482 TTTTGTGTAAGACCACGTCTGGGGCGTTGGCATCGATTTGAGAT
1 TTTTGTGTAAGACCACGTCTGAGACGTTGGCATCGATTTGAGAT
* * * *
72616526 TTTTGTCTAAGACCACGTTTGAGATGTTGGCATCAATTTGAGAT
1 TTTTGTGTAAGACCACGTCTGAGACGTTGGCATCGATTTGAGAT
* * *
72616570 TTATGTGTAAGACCATGTCTGAGACATTGGCATCG
1 TTTTGTGTAAGACCACGTCTGAGACGTTGGCATCG
72616605 CATATGATTT
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (44 bp):
TTTTGTGTAAGACCACGTCTGAGACGTTGGCATCGATTTGAGAT
Found at i:72616638 original size:42 final size:42
Alignment explanation
Indices: 72616574--72616668 Score: 113
Period size: 42 Copynumber: 2.2 Consensus size: 42
72616564 TGAGATTTAT
* *
72616574 GTGTAAGACCATGTCTGAGACATTGGCATCGCATA-TGATTTC
1 GTGTAAGACCATATCTGAGACATTGGCATCG-ATATTGATTAC
*
72616616 GTGTAAGACCCTATCT-AGGACATTGGCATCGATATTTGATTAC
1 GTGTAAGACCATATCTGA-GACATTGGCATCGATA-TTGATTAC
*
72616659 ATGTAAGACC
1 GTGTAAGACC
72616669 TCGTTTAGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
41 4 0.09
42 27 0.59
43 15 0.33
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGAGACATTGGCATCGATATTGATTAC
Found at i:72618155 original size:42 final size:42
Alignment explanation
Indices: 72618044--72618204 Score: 171
Period size: 42 Copynumber: 3.8 Consensus size: 42
72618034 GTGTTACATA
* * * *
72618044 CCATATCCCAAATATGGTCTTACATGTAA-TCTCGTGTCGTTG
1 CCATATCCCAAATATGGTCTTACACG-AAGTCTCATATCGATG
* **
72618086 CCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCGATG
1 CC-ATATCCCAAATATGGTCTTACACGAAGTCTCATATCGATG
* * * * * *
72618129 CCATATCCTAGATATTGTCTTGCACGAGGTCTCATATTGATG
1 CCATATCCCAAATATGGTCTTACACGAAGTCTCATATCGATG
*
72618171 CCATATCCCAAATATGGTCTTACACGTAGTCTCA
1 CCATATCCCAAATATGGTCTTACACGAAGTCTCA
72618205 GTAACCCTAA
Statistics
Matches: 97, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 65 0.67
43 32 0.33
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (42 bp):
CCATATCCCAAATATGGTCTTACACGAAGTCTCATATCGATG
Found at i:72619608 original size:15 final size:15
Alignment explanation
Indices: 72619576--72619604 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72619566 ATTTTATGTG
72619576 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
72619591 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
72619605 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:72628641 original size:41 final size:44
Alignment explanation
Indices: 72628533--72628641 Score: 116
Period size: 45 Copynumber: 2.5 Consensus size: 44
72628523 AATATGTGTT
* * * *
72628533 TTCGTGTAAGACCATGTCTGGGACGTTGGCATCAATATATGTGG
1 TTCGTGTAAGACCATGTCTGGGACATGGGCATCAATATATGAGA
* * *
72628577 TTAAGAGTAAGACCATGTTTGGGACATGGGCATC-ATAT-T-AGA
1 TT-CGTGTAAGACCATGTCTGGGACATGGGCATCAATATATGAGA
*
72628619 TTCGTGTAAGACCCTGTCTGGGA
1 TTCGTGTAAGACCATGTCTGGGA
72628642 TAGTGGCATC
Statistics
Matches: 53, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
41 17 0.32
42 3 0.06
43 1 0.02
44 6 0.11
45 26 0.49
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (44 bp):
TTCGTGTAAGACCATGTCTGGGACATGGGCATCAATATATGAGA
Found at i:72628650 original size:41 final size:42
Alignment explanation
Indices: 72628533--72628690 Score: 113
Period size: 45 Copynumber: 3.7 Consensus size: 42
72628523 AATATGTGTT
* * * * *
72628533 TTCGTGTAAGACCATGTCTGGGACGTTGGCATCAATATATGTGG
1 TTCGTGTAAGACCATGTCTGGGACATGGGCATC--GATATGAGA
* * * *
72628577 TTAAGAGTAAGACCATGTTTGGGACATGGGCATC-ATATTAGA
1 TT-CGTGTAAGACCATGTCTGGGACATGGGCATCGATATGAGA
* *
72628619 TTCGTGTAAGACCCTGTCTGGGATA-GTGGCATCGATATGAGA
1 TTCGTGTAAGACCATGTCTGGGACATG-GGCATCGATATGAGA
* * * *
72628661 TAGCATGTATGACCACGTCTGGGACGATGG
1 T-TCGTGTAAGACCATGTCTGGGAC-ATGG
72628691 CATTGTTCAA
Statistics
Matches: 88, Mismatches: 20, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
40 1 0.01
41 24 0.27
42 15 0.17
43 17 0.19
44 4 0.05
45 27 0.31
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (42 bp):
TTCGTGTAAGACCATGTCTGGGACATGGGCATCGATATGAGA
Found at i:72630166 original size:28 final size:27
Alignment explanation
Indices: 72630135--72630188 Score: 63
Period size: 28 Copynumber: 2.0 Consensus size: 27
72630125 ATATTGACAT
* *
72630135 ATTGGTTCTGTTATGTGAATTTAATAAA
1 ATTGGTTATGTCATGTGAA-TTAATAAA
* *
72630163 ATTGTTTATGTCATGTGTATTAATAA
1 ATTGGTTATGTCATGTGAATTAATAA
72630189 TTCCAAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.31, C:0.04, G:0.17, T:0.48
Consensus pattern (27 bp):
ATTGGTTATGTCATGTGAATTAATAAA
Found at i:72632079 original size:180 final size:181
Alignment explanation
Indices: 72631791--72632128 Score: 491
Period size: 180 Copynumber: 1.9 Consensus size: 181
72631781 TAATATTCGT
* * **
72631791 TAATTTTCCCAAAAAATAGACTCGCATATATTCTTACAAAAAAATTTTTAGAATTTTTTGTTTAG
1 TAATTTTCCCAAAAAATAGACTCACATATATTCCTACAAAAAAATTTTTAGAATTTTTCATTTAG
* *
72631856 CCAATTAGTACAGTTTATTCATTAAAGTTACACCTATTTCACTGTCCAACAGTTTCAACCTCTCT
66 CCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAACAGTTCCAACCTCTCT
* * *
72631921 TCACTAAATATTATTTCTCTCAT-GGTACGGAAATCAAAATTAAGAACTAC
131 TCACAAAAAATTATTTATCTCATCGGTACGGAAATCAAAATTAAGAACTAC
* * *
72631971 TAATTTTCCCAAAAACTAGACTCATATATATTCCTATC-ATAAAATTTTTAGAATTTTTCATTTA
1 TAATTTTCCCAAAAAATAGACTCACATATATTCCTA-CAAAAAAATTTTTAGAATTTTTCATTTA
* * * * * *
72632035 GCCTATTAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGTCTAACAGTTCCGATCTTTC
65 GCCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAACAGTTCCAACCTCTC
72632100 TTCACAAAAAATTATTTATCTCATCGGTA
130 TTCACAAAAAATTATTTATCTCATCGGTA
72632129 AAGATCTTGG
Statistics
Matches: 138, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
180 133 0.96
181 5 0.04
ACGTcount: A:0.34, C:0.19, G:0.08, T:0.39
Consensus pattern (181 bp):
TAATTTTCCCAAAAAATAGACTCACATATATTCCTACAAAAAAATTTTTAGAATTTTTCATTTAG
CCAATTAGTACAGTTTATTCATTAAAGATACACCTATTTCACTGTCCAACAGTTCCAACCTCTCT
TCACAAAAAATTATTTATCTCATCGGTACGGAAATCAAAATTAAGAACTAC
Found at i:72634235 original size:40 final size:40
Alignment explanation
Indices: 72634135--72634399 Score: 338
Period size: 40 Copynumber: 6.7 Consensus size: 40
72634125 GCTCCTCGTT
* * ** *
72634135 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
72634175 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* *
72634214 CAAATGCCTCCGGGACTTAACCCCGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
72634254 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
*
72634294 CGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
* * * * * *
72634334 CGAATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCA
*
72634375 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
72634400 CAGCATTCAA
Statistics
Matches: 203, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 160 0.79
41 8 0.04
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCA
Found at i:72648975 original size:18 final size:18
Alignment explanation
Indices: 72648949--72648989 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
72648939 TTATTACTGG
*
72648949 TACTTTTACTCTCTCTGA
1 TACTATTACTCTCTCTGA
72648967 TACTATTACTCTCTCTGA
1 TACTATTACTCTCTCTGA
72648985 TACTA
1 TACTA
72648990 AAGTTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.22, C:0.27, G:0.05, T:0.46
Consensus pattern (18 bp):
TACTATTACTCTCTCTGA
Found at i:72651694 original size:46 final size:46
Alignment explanation
Indices: 72651625--72651751 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
72651615 TATATATACA
* * *
72651625 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
* * *
72651671 CGTCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
72651717 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
72651752 CGCCACTTAT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:72651827 original size:47 final size:47
Alignment explanation
Indices: 72651775--72652532 Score: 1268
Period size: 47 Copynumber: 16.1 Consensus size: 47
72651765 CACTTCCACG
* **
72651775 TTCATCACATTGGCCAATCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72651822 TTCATCACATT-GCCAATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCC-ATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
72651869 TTCATCACATTGGCGATTCGACCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72651916 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
72651963 TTCATCATATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72652010 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72652057 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
72652104 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72652151 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
72652198 TTCATCACATTGGCCATTCAGCCTTATCAGC-TATATGCATGTTAACA
1 TTCATCACATTGGCCATTCGGCCTTATCA-CATATATGCATGTTCACA
*
72652245 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCGTGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72652292 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
72652339 TTCATCACATTGGCCACTCGGCCTTATCACCTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * *
72652386 TTCATCACATTGGTCATTCGGCCTTATCACGTATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72652433 TTCATCACATTGGCCATTCAGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72652480 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72652527 TTCATC
1 TTCATC
72652533 TCATAAAATC
Statistics
Matches: 665, Mismatches: 42, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
46 4 0.01
47 658 0.99
48 3 0.00
ACGTcount: A:0.26, C:0.27, G:0.13, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:72651923 original size:25 final size:25
Alignment explanation
Indices: 72651800--72651924 Score: 72
Period size: 24 Copynumber: 5.2 Consensus size: 25
72651790 AATCTACCTT
* *
72651800 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* *
72651825 AT--CACAT-TGCCAA-TTCGGCCTT-
1 ATCACACATATG-CAAGTTC-ACATTC
* *
72651847 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* *
72651872 AT--CACAT-TGGCGA-TTCGACCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
72651894 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
72651919 ATCACA
1 ATCACA
72651925 TTGGCCATTC
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 13 0.18
23 19 0.26
24 21 0.29
25 19 0.26
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCAAGTTCACATTC
Found at i:72652461 original size:22 final size:22
Alignment explanation
Indices: 72652436--72652511 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
72652426 GTTCATATTC
72652436 ATCACATTGGCCATTCAGCCTT
1 ATCACATTGGCCATTCAGCCTT
* *
72652458 ATCACATATATG-CATGTTCA-CATT
1 ATCACAT-T-GGCCA--TTCAGCCTT
*
72652482 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCAGCCTT
72652505 ATCACAT
1 ATCACAT
72652512 ATATGCATGT
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 17 0.40
23 7 0.17
24 7 0.17
25 11 0.26
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCAGCCTT
Found at i:72656151 original size:40 final size:40
Alignment explanation
Indices: 72656086--72656522 Score: 624
Period size: 40 Copynumber: 10.9 Consensus size: 40
72656076 GATTACACAT
* * * * **
72656086 CACCGGCACGAATTCCCTTCAGGACTTAGCCCGGATGTAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
72656126 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
72656166 CACTAGCCCGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
72656206 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
72656246 CACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
72656286 CATCAGCACGAGTGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* * *
72656326 CACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
*
72656366 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAT
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
72656406 CACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
* *
72656446 CACCAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA-A
*
72656487 -ACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
1 CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATA
72656523 TATATAACTC
Statistics
Matches: 351, Mismatches: 45, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 350 1.00
41 1 0.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATACAA
Found at i:72656215 original size:80 final size:80
Alignment explanation
Indices: 72656082--72656524 Score: 760
Period size: 80 Copynumber: 5.5 Consensus size: 80
72656072 GCCTGATTAC
** * * *
72656082 ACATCACCGGCACGAATTCCCTTCAGGACTTAGCCCGGATGTAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
72656147 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
72656162 ACATCACTAGCCCGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
72656227 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
72656242 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACATCAGCACGAGTGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
72656307 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
72656322 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
72656387 GGACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
72656402 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCA
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
*
72656467 GAACTTAGCCCGGAT
66 GGACTTAGCCCGGAT
* *
72656482 ACATAACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
1 ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATA
72656525 TATAACTCTC
Statistics
Matches: 346, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 346 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (80 bp):
ACATCACTAGCACGAATGCTCTTCAGGACTTAGCCCGGATATAACACCAGCACGAATGCTCTTCG
GGACTTAGCCCGGAT
Found at i:72658069 original size:46 final size:46
Alignment explanation
Indices: 72658018--72658172 Score: 283
Period size: 46 Copynumber: 3.4 Consensus size: 46
72658008 ACATATCTCA
72658018 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
*
72658064 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACATGTTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
* *
72658110 CATTAGCCATTCGACTTTACCTCATATCCATCTCATACACATTTCG
1 CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
72658156 CATTAGCCATTCGGCTT
1 CATTAGCCATTCGGCTT
72658173 CGCCACATAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 104 1.00
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCTCATATCCATCTCATACACGTTTCG
Found at i:72658182 original size:46 final size:46
Alignment explanation
Indices: 72658000--72658172 Score: 274
Period size: 46 Copynumber: 3.8 Consensus size: 46
72657990 TATATATACA
* * * *
72658000 CATCTCACACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
72658046 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
** *
72658092 CATCTCATACATGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
72658138 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
72658173 CGCCACATAT
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.24, C:0.32, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:72658248 original size:47 final size:47
Alignment explanation
Indices: 72658196--72658716 Score: 893
Period size: 47 Copynumber: 11.1 Consensus size: 47
72658186 CACTTCCACG
** *
72658196 TTCATCACATTGGCCATTCTACCTTATCACAAATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
72658243 TTCATCACATTGGTCATTCGGCCTAATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* * * *
72658290 TTCATCATATTGGCCATTTGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72658337 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
72658384 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72658431 TTCATCACATT-GCCATTCGGCCTTATCAC-TATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72658476 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72658523 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
72658570 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72658617 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72658664 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
72658711 TTCATC
1 TTCATC
72658717 TCATAAAATC
Statistics
Matches: 450, Mismatches: 22, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
45 25 0.06
46 36 0.08
47 389 0.86
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:72658344 original size:25 final size:25
Alignment explanation
Indices: 72658315--72658439 Score: 63
Period size: 23 Copynumber: 5.2 Consensus size: 25
72658305 ATTTGGCCTT
72658315 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* * *
72658340 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
** *
72658362 ATCACGTATATGCATGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
* * *
72658387 AT--CACAT-TGGCCA-TTCGGCCTT-
1 ATCACACATAT-GCAAGTTC-ACATTC
72658409 ATCACACATATGCAAGTTCACATTC
1 ATCACACATATGCAAGTTCACATTC
72658434 ATCACA
1 ATCACA
72658440 TTGCCATTCG
Statistics
Matches: 68, Mismatches: 18, Indels: 28
0.60 0.16 0.25
Matches are distributed among these distances:
22 12 0.18
23 19 0.28
24 19 0.28
25 18 0.26
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.30
Consensus pattern (25 bp):
ATCACACATATGCAAGTTCACATTC
Found at i:72658570 original size:280 final size:280
Alignment explanation
Indices: 72658196--72658716 Score: 907
Period size: 280 Copynumber: 1.9 Consensus size: 280
72658186 CACTTCCACG
* *
72658196 TTCATCACATTGGCCATTCTACCTTATCACAAATATGCATGTTCACATTCATCACATTGGTCATT
1 TTCATCACATTGGCCATTCGACCTTATCACAAATATGCATGTTCACATTCATCACATTGGCCATT
* *
72658261 CGGCCTAATCACATATATGCATGTTCACATTCATCATATTGGCCATTTGGCCTTATCACACATAT
66 CGGCCTAATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
*
72658326 GCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCA
131 GCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
72658391 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCACATTGCCATTCGGCCTTA
196 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCACATTGCCATTCGGCCTTA
72658456 TCACTATATGCATGTTCACA
261 TCACTATATGCATGTTCACA
* **
72658476 TTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGACCTTATCACAAATATGCATGTTCACATTCATCACATTGGCCATT
* * **
72658541 CGGCCTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATAT
66 CGGCCTAATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
*
72658606 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
131 GCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
72658671 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATC
196 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATC
72658717 TCATAAAATC
Statistics
Matches: 226, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
280 226 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.34
Consensus pattern (280 bp):
TTCATCACATTGGCCATTCGACCTTATCACAAATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTAATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
GCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACATTCATCACATTGCCATTCGGCCTTA
TCACTATATGCATGTTCACA
Found at i:72658764 original size:233 final size:230
Alignment explanation
Indices: 72658196--72658749 Score: 747
Period size: 233 Copynumber: 2.4 Consensus size: 230
72658186 CACTTCCACG
** * ** *
72658196 TTCATCACATTGGCCATTCTACCTTATCACAAATATGCATGTTCACATTCATCACATTGGTCATT
1 TTCATCACATT-GCCATTCGGCCTTATCAC-TATATGCATGTTCACATTCATCACATT-GAAAAT
* ** * *
72658261 CGGCCTAATCACATATATGCATGTTCACATTCATCATATTGGCCATTTGGCCTTATCACACATAT
63 --GCCTAATCACAAATATAAATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
72658326 GCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCA
126 GCAAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCA
72658391 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
191 CATTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
** *
72658431 TTCATCACATTGCCATTCGGCCTTATCACTATATGCATGTTCACATTCATCACATTGGCCATTCG
1 TTCATCACATTGCCATTCGGCCTTATCACTATATGCATGTTCACATTCATCACATT-GAAAAT--
* ** ** **
72658496 GCCTTATCACGTATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGC
63 GCCTAATCACAAATATAAATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGC
*
72658561 ATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACA
128 AAGTTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACA
* *
72658626 TTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
193 TTGGCCATTCGGCCTTATCACACATATGCAAGTTCACA
*
72658664 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCTCA-T-AAAAT-
1 TTCATCACATT-GCCATTCGGCCTTATCAC-TATATGCATGTTCACATTCATCACATTGAAAATG
*
72658726 CCTAAATCA-AAATATAAATTTTCA
64 CCT-AATCACAAATATAAATGTTCA
72658750 TGTATTCACA
Statistics
Matches: 293, Mismatches: 23, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
229 13 0.04
230 4 0.01
232 2 0.01
233 204 0.70
234 35 0.12
235 35 0.12
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.34
Consensus pattern (230 bp):
TTCATCACATTGCCATTCGGCCTTATCACTATATGCATGTTCACATTCATCACATTGAAAATGCC
TAATCACAAATATAAATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCAAG
TTCACATTCATCACATTGGCCATTCGGCCTTATCACGTATATGCATGTTCACATTCATCACATTG
GCCATTCGGCCTTATCACACATATGCAAGTTCACA
Found at i:72666234 original size:27 final size:27
Alignment explanation
Indices: 72666203--72666906 Score: 213
Period size: 27 Copynumber: 26.0 Consensus size: 27
72666193 TTAGTTTACC
*
72666203 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
72666230 AAATTAC-CAAAGTATCCC-CAATTTATA
1 AAATTACTGAAA-TA-CCCTCGATTTGTA
** *
72666257 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
72666284 AAATTA-TCGAAATACCTTC-AGTTTGCA
1 AAATTACT-GAAATACCCTCGA-TTTGTA
*
72666311 AAATTACTAAAATACCCTCGATTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
* * **
72666339 AAATTACTGAAATACTCTTG-TAAGATA
1 AAATTACTGAAATACCCTCGATTTG-TA
* * ** *
72666366 GAATTAC-CATTTTACCCTCGATTTATA
1 AAATTACTGA-AATACCCTCGATTTGTA
* *** *
72666393 GAATTACCT-TTTTACCCTCGATTTATA
1 AAATTA-CTGAAATACCCTCGATTTGTA
* * *** *
72666420 GAATTACCGTCTTACCCTC-AATTG-A
1 AAATTACTGAAATACCCTCGATTTGTA
* ** **
72666445 CAGAATTAC-CATTTTACCCTCGATTTACA
1 -A-AATTACTGA-AATACCCTCGATTTGTA
* **
72666474 AAATTACTGAAATACCCT-TAGTTTACA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** ***
72666501 AAATTACCAAAATACCCTCGATCAATA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
72666528 AAATTACCAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
72666555 AAATTACTAAAATACCC-CTGGTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
72666582 AAATTACTAAAATACCCCCTGCTTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
* * *
72666610 AAATTACTAAAATACCTTCGACTTGTAA
1 AAATTACTGAAATACCCTCGATTTGT-A
* *
72666638 AAATTACT-AAAGTACCCTCGCTTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *** *
72666665 GAATTATTGTTTTACCCTCGATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* *** * **
72666692 GAATTACTGTTTTACCCTTGATTTACA
1 AAATTACTGAAATACCCTCGATTTGTA
* *** * *
72666719 AAATTACCGTTTTACCTTCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* **
72666745 AAATTACTGAAATACCC-CTATAGGGTA
1 AAATTACTGAAATACCCTCGAT-TTGTA
* ** * *
72666772 GAATTACCAAAACACCC-CTAGTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
** * *
72666799 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACTGAAATACC-CTCGATTTGTA
* **
72666826 AAATTACCGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** **
72666853 AAATTACCAAAATACCC-CTGATTTACA
1 AAATTACTGAAATACCCTC-GATTTGTA
* **
72666880 AAATTACAGAAATACCCTTAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
72666907 GATTTACCAA
Statistics
Matches: 526, Mismatches: 116, Indels: 70
0.74 0.16 0.10
Matches are distributed among these distances:
25 3 0.01
26 31 0.06
27 405 0.77
28 86 0.16
29 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:72666636 original size:55 final size:53
Alignment explanation
Indices: 72666500--72666654 Score: 168
Period size: 55 Copynumber: 2.8 Consensus size: 53
72666490 CTTAGTTTAC
* ** * *
72666500 AAAATTACCAAAATACCCTCGATCAATAAAATTACCAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATA-CCTCGAT-TGTAAAATTACTAAAATACCCCCTGCTTTGT
* *
72666554 AAAATTACTAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCCTGCTTTGT
1 AAAATTACTAAAATA--CCTCGATTGTAAAATTACTAAAATACCCCCTGCTTTGT
*
72666609 AAAATTACTAAAATACCTTCGACTTGTAAAAATTACTAAAGTACCC
1 AAAATTACTAAAATACC-TCGA-TTGT-AAAATTACTAAAATACCC
72666655 TCGCTTTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 2 0.02
54 31 0.36
55 36 0.42
56 17 0.20
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (53 bp):
AAAATTACTAAAATACCTCGATTGTAAAATTACTAAAATACCCCCTGCTTTGT
Found at i:72666661 original size:55 final size:54
Alignment explanation
Indices: 72666526--72666654 Score: 170
Period size: 55 Copynumber: 2.4 Consensus size: 54
72666516 CCTCGATCAA
* * **
72666526 TAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCCTGGTTTG
1 TAAAATTACTAAAATACCCCTGCTTTGTAAAATTACTAAAATACCCCTGACTTG
*
72666580 TAAAATTACTAAAATACCCCCTGCTTTGTAAAATTACTAAAATA-CCTTCGACTTG
1 TAAAATTACTAAAATA-CCCCTGCTTTGTAAAATTACTAAAATACCCCT-GACTTG
*
72666635 TAAAAATTACTAAAGTACCC
1 T-AAAATTACTAAAATACCC
72666655 TCGCTTTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
54 18 0.27
55 34 0.52
56 14 0.21
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
TAAAATTACTAAAATACCCCTGCTTTGTAAAATTACTAAAATACCCCTGACTTG
Found at i:72666898 original size:54 final size:54
Alignment explanation
Indices: 72666793--72666923 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
72666783 ACACCCCTAG
* * *** *
72666793 TTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
72666847 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
1 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
* * *
72666901 TTTGTAGATTTACCAAAACACCC
1 TTTGTAAAATTACCAAAATACCC
72666924 TTGTAGGATG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 68 1.00
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTAA
Found at i:72666923 original size:27 final size:27
Alignment explanation
Indices: 72666773--72666925 Score: 148
Period size: 27 Copynumber: 5.7 Consensus size: 27
72666763 TATAGGGTAG
* * *
72666773 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
** *
72666800 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAATTTGTAA
*
72666827 AATTACCGAAATACCCTTAATTTGTAA
1 AATTACCAAAATACCCTTAATTTGTAA
* * **
72666854 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTTAATTTGTAA
*
72666881 AATTA-CAGAAATACCCTTAATTTGTAG
1 AATTACCA-AAATACCCTTAATTTGTAA
* *
72666908 ATTTACCAAAACACCCTT
1 AATTACCAAAATACCCTT
72666926 GTAGGATGAA
Statistics
Matches: 103, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.03
27 97 0.94
28 3 0.03
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAATTTGTAA
Found at i:72666987 original size:27 final size:27
Alignment explanation
Indices: 72666944--72667017 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
72666934 AAAAGACTAA
*
72666944 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
72666971 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
72666998 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
72667018 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:72667754 original size:20 final size:20
Alignment explanation
Indices: 72667729--72667815 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
72667719 GATATGATAT
*
72667729 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
72667749 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
72667769 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
72667789 AGATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
72667809 ACATGAT
1 ACATGAT
72667816 GTATTCATAA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:72667941 original size:52 final size:51
Alignment explanation
Indices: 72667865--72667997 Score: 200
Period size: 52 Copynumber: 2.6 Consensus size: 51
72667855 GAGGAAGTGC
* *
72667865 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAGCTT-TGCCCCAGTTTACCA
* *
72667917 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGATCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAGCTTTGCCCCAGTTTACCA
72667968 AAAAGGGCTT-TGCCCCAG-TTATT-AAAAGAG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAG
72667998 TCTAGGCCTT
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
48 6 0.08
49 5 0.07
50 8 0.11
51 23 0.30
52 34 0.45
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGAGCTTTGCCCCAGTTTACCA
Found at i:72667962 original size:25 final size:26
Alignment explanation
Indices: 72667865--72667995 Score: 180
Period size: 26 Copynumber: 5.2 Consensus size: 26
72667855 GAGGAAGTGC
72667865 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
72667891 AAAAGGGCTTATGCCCCAGTTTATCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
72667917 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
** **
72667943 AAAAGATCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
72667968 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
72667991 AAAAG
1 AAAAG
72667996 AGTCTAGGCC
Statistics
Matches: 93, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
23 5 0.05
24 3 0.03
25 29 0.31
26 56 0.60
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:72668192 original size:42 final size:42
Alignment explanation
Indices: 72668133--72668224 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
72668123 TAGTCTCCCC
* ** *
72668133 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
72668175 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
72668217 AAATGGGC
1 AAATGGGC
72668225 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:72668286 original size:31 final size:30
Alignment explanation
Indices: 72668248--72668326 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 30
72668238 CGTTTACAAT
72668248 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTC-GCCCAGTGAAATGATTTATGA
*
72668279 AAAGGCTTCGACCCAGTGATATGATTTATGA
1 AAAGGCTTCG-CCCAGTGAAATGATTTATGA
72668310 AAAGGCTTCGGCCCAGT
1 AAAGGCTTC-GCCCAGT
72668327 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
30 1 0.02
31 43 0.96
32 1 0.02
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (30 bp):
AAAGGCTTCGCCCAGTGAAATGATTTATGA
Found at i:72673929 original size:25 final size:26
Alignment explanation
Indices: 72673901--72673949 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
72673891 ATAAACTATT
* *
72673901 AATAATTCAAT-AAATTGAAATTTTA
1 AATAATTAAATAAAATTAAAATTTTA
72673926 AATAATTAAATAAAATTAAAATTT
1 AATAATTAAATAAAATTAAAATTT
72673950 AGGAGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (26 bp):
AATAATTAAATAAAATTAAAATTTTA
Found at i:72673950 original size:25 final size:25
Alignment explanation
Indices: 72673901--72673950 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
72673891 ATAAACTATT
* *
72673901 AATAATTCAATAAATTGAAATTTTA
1 AATAATTAAATAAATTGAAAATTTA
72673926 AATAATTAAATAAAATT-AAAATTTA
1 AATAATTAAAT-AAATTGAAAATTTA
72673951 GGAGAAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (25 bp):
AATAATTAAATAAATTGAAAATTTA
Found at i:72674129 original size:18 final size:18
Alignment explanation
Indices: 72674102--72674150 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
72674092 ATGTGCGTAC
* *
72674102 GAGCAGGCAGCACCATAG
1 GAGCAAGCAGCACAATAG
* *
72674120 GAGCAAGCAGTAGAATAG
1 GAGCAAGCAGCACAATAG
72674138 GAGCAAGCAGCAC
1 GAGCAAGCAGCAC
72674151 TAGGCACGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.33, T:0.06
Consensus pattern (18 bp):
GAGCAAGCAGCACAATAG
Found at i:72674556 original size:15 final size:15
Alignment explanation
Indices: 72674539--72674567 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
72674529 ATTAAAGATA
72674539 AAAAT-TGATTAAAT
1 AAAATATGATTAAAT
72674553 AAAATATGATTAAAT
1 AAAATATGATTAAAT
72674568 TTTAAACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AAAATATGATTAAAT
Found at i:72675967 original size:43 final size:43
Alignment explanation
Indices: 72675906--72675991 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
72675896 AAGTCAATAC
72675906 CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
1 CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
*
72675949 CCCAAACATCGAATAATTCTACCTTAATGATGTTTGTTCAAGG
1 CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
72675992 TATCTCATTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (43 bp):
CCCAAACATCGAATAATTCTACCTCAATGATGTTTGTTCAAGG
Found at i:72693427 original size:8 final size:8
Alignment explanation
Indices: 72693414--72693439 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
72693404 CATCACATAC
72693414 TTACACAA
1 TTACACAA
72693422 TTACACAA
1 TTACACAA
72693430 TTACACAA
1 TTACACAA
72693438 TT
1 TT
72693440 CATGCAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (8 bp):
TTACACAA
Found at i:72720226 original size:34 final size:33
Alignment explanation
Indices: 72720162--72720227 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
72720152 TTAAAGATGT
* *
72720162 TGTTCTACATGCATGGAACGGCAATTAATGAGA
1 TGTTCCACATGCATGGAACGACAATTAATGAGA
*
72720195 TGTTCCACATGCAATGG-ACGACATTTAAATGAG
1 TGTTCCACATGC-ATGGAACGACAATT-AATGAG
72720228 GGAGAGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
33 18 0.64
34 10 0.36
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (33 bp):
TGTTCCACATGCATGGAACGACAATTAATGAGA
Found at i:72721910 original size:40 final size:40
Alignment explanation
Indices: 72721865--72722133 Score: 475
Period size: 40 Copynumber: 6.7 Consensus size: 40
72721855 GCAAACACAT
*
72721865 TTGCCTTCGGGTCTTAGCCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
72721905 TTGCCTTCGGGTCTTAGCCCGGACATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72721945 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72721985 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72722025 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72722065 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72722105 TTGCCTTCGGGTCTTAGCCCGGATATATC
1 TTGCCTTCGGGTCTTAGCCCGGATATATC
72722134 CCAATGCTCA
Statistics
Matches: 224, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 224 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72728841 original size:40 final size:40
Alignment explanation
Indices: 72728793--72729059 Score: 464
Period size: 40 Copynumber: 6.7 Consensus size: 40
72728783 GCAAACACCT
* * *
72728793 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72728833 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72728873 TTGCCTTCGGGTCATAGCCCGGATATAT-AACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72728912 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
72728952 TTGCCTTCGGGTCTTAGCCCGGATATATTAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72728992 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
72729032 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
72729060 TCAATGCTCA
Statistics
Matches: 217, Mismatches: 9, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 38 0.18
40 179 0.82
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:72747444 original size:24 final size:24
Alignment explanation
Indices: 72747417--72747467 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
72747407 ATAAATACCT
72747417 AATAACAAATATTAT-ATAATATAA
1 AATAACAAATATTATAATAATA-AA
* *
72747441 AAT-ATAAATATTTTAATAATAAA
1 AATAACAAATATTATAATAATAAA
72747464 AATA
1 AATA
72747468 TGAATATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (24 bp):
AATAACAAATATTATAATAATAAA
Found at i:72747476 original size:23 final size:23
Alignment explanation
Indices: 72747423--72747476 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
72747413 ACCTAATAAC
*
72747423 AAATATTATATAATATAAAATAT
1 AAATATTTTATAATATAAAATAT
72747446 AAATATTTTAATAATA-AAAATAT
1 AAATATTTT-ATAATATAAAATAT
*
72747469 GAATATTT
1 AAATATTT
72747477 GTTTAAGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 22 0.79
24 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATATTTTATAATATAAAATAT
Found at i:72749455 original size:29 final size:30
Alignment explanation
Indices: 72749423--72749511 Score: 85
Period size: 31 Copynumber: 3.0 Consensus size: 30
72749413 TTGATTTAAT
72749423 GTGTAATTGTATATATG-AACTTTAATTTG
1 GTGTAATTGTATATATGAAACTTTAATTTG
* * * *
72749452 GTGTAATTATACACATGAAACTCTAATTGTG
1 GTGTAATTGTATATATGAAACTTTAATT-TG
*
72749483 GT-TCAAATGTATACT-TGAAACTTTAATTT
1 GTGT-AATTGTATA-TATGAAACTTTAATTT
72749512 TGATTTAATC
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
29 14 0.30
30 11 0.23
31 22 0.47
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.43
Consensus pattern (30 bp):
GTGTAATTGTATATATGAAACTTTAATTTG
Found at i:72749932 original size:29 final size:30
Alignment explanation
Indices: 72749890--72749963 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
72749880 CCAAAATTTG
* * *
72749890 AAATTGTGGGTTCATCTATTT-TAAAAAAT
1 AAATTATGGATTCATCTATTTCTAAAAAAC
*
72749919 AAATTATGGATTCATCTTTTTCTAAAAAAC
1 AAATTATGGATTCATCTATTTCTAAAAAAC
* *
72749949 AAATTCTAGATTCAT
1 AAATTATGGATTCAT
72749964 ACCTAAACAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
29 18 0.47
30 20 0.53
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (30 bp):
AAATTATGGATTCATCTATTTCTAAAAAAC
Found at i:72757834 original size:40 final size:40
Alignment explanation
Indices: 72757779--72758002 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
72757769 TATTCGGATG
*
72757779 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
72757819 ATATCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
72757862 ATACCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
72757902 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
72757942 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
72757982 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
72758003 ATACTTGGGT
Statistics
Matches: 160, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 13 0.08
40 111 0.69
41 1 0.01
43 35 0.22
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:72757922 original size:83 final size:80
Alignment explanation
Indices: 72757783--72758002 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 80
72757773 CGGATGATAT
* * **
72757783 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACTATATCCGAGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
72757848 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
72757866 CCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
72757931 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * * *
72757946 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCTCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
72758003 ATACTTGGGT
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
79 16 0.13
80 44 0.35
81 2 0.02
83 63 0.50
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
CCGGGCTAAGTCTCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:72767003 original size:47 final size:47
Alignment explanation
Indices: 72766925--72767433 Score: 838
Period size: 47 Copynumber: 10.7 Consensus size: 47
72766915 CCCTTCGGGA
* * * * * *
72766925 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72766972 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767019 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72767068 CTTATCACATATATACACTTTCATATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
72767115 CTTATCACATATATACACTTTCATATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767162 CTTATCACATATATACACTTTCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767209 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767256 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767305 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767352 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767399 CTTATCACATATATACACTTTCACATCCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
72767434 AGAATCCTAA
Statistics
Matches: 438, Mismatches: 20, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 346 0.79
49 92 0.21
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72767272 original size:190 final size:188
Alignment explanation
Indices: 72766925--72767433 Score: 847
Period size: 190 Copynumber: 2.7 Consensus size: 188
72766915 CCCTTCGGGA
* * * * * * *
72766925 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
*
72766990 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* *
72767055 TCGGCCATTAGGCCTTATCACATATATACACTTTCATATTCATCACGTCGGCCATTAGGC
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767115 CTTATCACATATATACACTTTCATATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
*
72767180 TTTCACATTCATCACCTCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
72767245 GGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
72767305 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
*
72767370 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATCCATCACAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
72767434 AGAATCCTAA
Statistics
Matches: 300, Mismatches: 17, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
188 46 0.15
190 254 0.85
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72767345 original size:237 final size:237
Alignment explanation
Indices: 72766925--72767431 Score: 906
Period size: 237 Copynumber: 2.1 Consensus size: 237
72766915 CCCTTCGGGA
* * * * *
72766925 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACCTCGGCCACTAGGCCCTATCACATATATACAC
72766990 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
72767055 TCGGCCATTAGGCCTTATCACATATATACACTTTCATATTCATCACGTCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
* *
72767120 CACATATATACACTTTCATATTCATCACGTCGGCCATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
72767162 CTTATCACATATATACACTTTCACATTCATCACCTCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACCTCGGCCACTAGGCCCTATCACATATATACAC
72767227 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
72767292 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
72767357 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
196 CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
72767399 CTTATCACATATATACACTTTCACATCCATCAC
1 CTTATCACATATATACACTTTCACATCCATCAC
72767432 ATAGAATCCT
Statistics
Matches: 257, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
237 257 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (237 bp):
CTTATCACATATATACACTTTCACATCCATCACCTCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:72770040 original size:40 final size:40
Alignment explanation
Indices: 72769996--72770174 Score: 243
Period size: 40 Copynumber: 4.4 Consensus size: 40
72769986 GGGTGTCACA
72769996 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC
* *
72770036 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATATC
* * * *
72770079 CAGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC
* *
72770119 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC
*
72770159 C-GGCTAAATCCCGAAG
1 CGGGCTAAGTCCCGAAG
72770175 ATACTTGGGT
Statistics
Matches: 122, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 14 0.11
40 71 0.58
41 1 0.01
43 36 0.30
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATC
Found at i:72770137 original size:83 final size:79
Alignment explanation
Indices: 72769998--72770174 Score: 273
Period size: 83 Copynumber: 2.2 Consensus size: 79
72769988 GTGTCACACG
* *
72769998 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGC
72770063 GAGTAGTTGCTATACCC
66 --G-AGTTGCTATACCC
*
72770080 AGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 -GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
72770145 CGAGTTGCTATATCC
65 CGAGTTGCTATACCC
*
72770160 GGCTAAATCCCGAAG
1 GGCTAAGTCCCGAAG
72770175 ATACTTGGGT
Statistics
Matches: 89, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
79 14 0.16
80 12 0.13
81 1 0.01
83 62 0.70
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (79 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTACATCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAGTTGCTATACCC
Found at i:72772250 original size:46 final size:47
Alignment explanation
Indices: 72772197--72772413 Score: 196
Period size: 46 Copynumber: 4.6 Consensus size: 47
72772187 TGTGTGAGCA
* *
72772197 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAGA-TCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAGGCT
* * * *
72772243 AGTGTAAGACCATTTCTGGGACATGGCATC-GACATTGAGACGAG-GGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGGCT
* * *
72772291 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-A-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGGCT
* * * *
72772337 AGTGTAAGACATGTCTGAGACATGCATCGGCTACGAGATGATA-GTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGGCT
*
72772383 AGTGTAAGACCATGTGTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
72772414 ACTTGAGATA
Statistics
Matches: 141, Mismatches: 19, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
45 1 0.01
46 69 0.49
47 44 0.31
48 26 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGGCT
Found at i:72772422 original size:47 final size:48
Alignment explanation
Indices: 72772241--72772459 Score: 193
Period size: 46 Copynumber: 4.7 Consensus size: 48
72772231 ATTATGAGAT
* * **
72772241 CTAGTGTAAGACCATTTCTGGGACATGGCATCGACATTGAGACGA-GGG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGACGATAAG
*
72772289 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACG-TAAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGACGATAAG
* * * *
72772335 CCAGTGTAAGA-CATGTCTGAGACAT-GCATCGGCTACGAGATGAT-AG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGACGATAAG
* * * * *
72772381 TTAGTGTAAGACCATGTGTGGGACATGGCATCGACTTGAGA-TATCAG
1 CTAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGATAAG
* * * *
72772428 CCAGTGTAAAACCGTGTCTAGGACATGGCATC
1 CTAGTGTAAGACCATGTCTGGGACATGGCATC
72772460 AGCACCTTAC
Statistics
Matches: 142, Mismatches: 22, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 60 0.42
47 60 0.42
48 19 0.13
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGACGATAAG
Found at i:72772452 original size:140 final size:141
Alignment explanation
Indices: 72772197--72772459 Score: 338
Period size: 140 Copynumber: 1.9 Consensus size: 141
72772187 TGTGTGAGCA
* * *
72772197 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGATCTAGTGTAAGACCATTTCTGG
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCACATGATGAGATCTAGTGTAAGACCATGTCTGG
** * * *
72772262 GACATGGCATCGACATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGACGACAGCCAGTGTAAAACATGTCTAGGACATGGCATCGGCCTCG
72772326 AGACGTAAGCC
131 AGACGTAAGCC
* * *
72772337 AGTGTAAGACATGTCTGAGACATGCATCGGCTACGA-GATGATAGT-TAGTGTAAGACCATGTGT
1 AGTGTAAGACATGTCTGAGACATGCATCGGCCAC-ATGATGAGA-TCTAGTGTAAGACCATGTCT
* *
72772400 GGGACATGGCATCGAC-TTGAGA-TATCAGCCAGTGTAAAACCGTGTCTAGGACATGGCATC
64 GGGACATGGCATCGACATTGAGACGA-CAGCCAGTGTAAAA-CATGTCTAGGACATGGCATC
72772460 AGCACCTTAC
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 1 0.01
139 16 0.15
140 81 0.77
141 7 0.07
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGAGACATGCATCGGCCACATGATGAGATCTAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACGACAGCCAGTGTAAAACATGTCTAGGACATGGCATCGGCCTCG
AGACGTAAGCC
Found at i:72779215 original size:23 final size:23
Alignment explanation
Indices: 72779189--72779232 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
72779179 ATTGGTTTGG
*
72779189 TTTGAGATGATGATA-AGATGAGT
1 TTTGAGAT-ATGAAATAGATGAGT
*
72779212 TTTGTGATATGAAATAGATGA
1 TTTGAGATATGAAATAGATGA
72779233 AATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.36, C:0.00, G:0.27, T:0.36
Consensus pattern (23 bp):
TTTGAGATATGAAATAGATGAGT
Found at i:72783611 original size:15 final size:16
Alignment explanation
Indices: 72783572--72783611 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
72783562 ATTATTTTCT
72783572 TTTTCATTTAATTAAA
1 TTTTCATTTAATTAAA
* *
72783588 TTGTCATTTAA-TAAC
1 TTTTCATTTAATTAAA
72783603 TTTTCATTT
1 TTTTCATTT
72783612 TTCCAATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.30, C:0.10, G:0.03, T:0.57
Consensus pattern (16 bp):
TTTTCATTTAATTAAA
Found at i:72798817 original size:132 final size:133
Alignment explanation
Indices: 72798491--72798886 Score: 632
Period size: 132 Copynumber: 3.0 Consensus size: 133
72798481 CGAGATCTGC
* * *
72798491 AATTGTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGGTGGTGGCTTAAATCTGCTTAACTGT
1 AATT-TCAACCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGT
* * * * * *
72798556 AACTTCAGGAAGCCAAGATTTGTCGCCTTCGATCTACTCTACTGCAACTTCATGGAAACAAGATC
65 AACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
72798621 TAAA
130 TAAA
72798625 AATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGTA
1 AATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGTA
72798690 ACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
66 ACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
72798755 -AA
131 AAA
***
72798757 AATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACAACA
1 AATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGTA
* * * *
72798822 ACTTCAGGAAGCCAAGAATCGCCGTCTTCGGTCTGCTTCACTGCAACTTCAGGGAAACAGGATCT
66 ACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
72798887 GTAGGATTCA
Statistics
Matches: 246, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 125 0.51
133 117 0.48
134 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (133 bp):
AATTTCAACCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGTA
ACTTCAGGAAGCCAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATCT
AAA
Found at i:72802838 original size:20 final size:20
Alignment explanation
Indices: 72802815--72802868 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
72802805 AGTTTTTCCC
*
72802815 AGCTCGATTTAGCTCAC-ATG
1 AGCTCAATTTAGCTC-CTATG
* *
72802835 AGCTTAATTTAGCTCCTTTG
1 AGCTCAATTTAGCTCCTATG
72802855 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
72802869 TACTTTAGCT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCCTATG
Found at i:72802859 original size:30 final size:30
Alignment explanation
Indices: 72802825--72802888 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
72802815 AGCTCGATTT
72802825 AGCTCACA-TGAGCTTAATTTAGCTCCTTTG
1 AGCTCA-ATTGAGCTTAATTTAGCTCCTTTG
* * *
72802855 AGCTCAATTTAGCTTACTTTAGCTCGTTTG
1 AGCTCAATTGAGCTTAATTTAGCTCCTTTG
72802885 AGCT
1 AGCT
72802889 TGGCTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (30 bp):
AGCTCAATTGAGCTTAATTTAGCTCCTTTG
Found at i:72802878 original size:20 final size:20
Alignment explanation
Indices: 72802815--72802879 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
72802805 AGTTTTTCCC
* * * *
72802815 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
* *
72802835 AGCTTAATTTAGC-TCCTTT
1 AGCTCAATTTAGCTTACTTT
72802854 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
72802875 AGCTC
1 AGCTC
72802880 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 2 0.06
20 28 0.80
21 5 0.14
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:72812454 original size:131 final size:131
Alignment explanation
Indices: 72812177--72812585 Score: 396
Period size: 132 Copynumber: 3.1 Consensus size: 131
72812167 TCGCCTTCGC
* * *
72812177 TTTGAAAGATTTTTAATAA-ACATGAGTGAAAACCTAAAAGGAATATTCAATTGTTTTGAGCAAA
1 TTTGAAGGA-TTTTAAAAAGACATGAGTGAAAACCTAAAAGGAATATTCGATTGTTTTGAGCAAA
* ** * * * * * * * *
72812241 CGAGAAGTCACAACCCAACACGATAGGGCATGA-TTCTCGAATTATCAAACACCGAGTATTGCCT
65 CG-GAAATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGT-AAACATCGAGTCTCGTCT
**
72812305 TTGT
128 TCAT
* * * * *
72812309 TTTAAAAGATTTTTAGAAGACATGAGTGAAAACCT-AAAGGAATATTCGATTGTTTTGAGCAGAC
1 TTTGAAGGATTTTAAAAAGACATGAGTGAAAACCTAAAAGGAATATTCGATTGTTTTGAGCAAAC
* * *
72812373 GCGAAATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGTTAACTATAGGGTCTCGTCTT
66 G-GAAATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGTAAAC-ATCGAGTCTCGTCTT
72812438 CAT
129 CAT
* ** ** *
72812441 TTTGAAGGATTTTAAAAAGACGTGAGTG-AAATTTCGAAGTG-ATATTCGATTATTTTGAGCAAA
1 TTTGAAGGATTTTAAAAAGACATGAGTGAAAACCTAAAAG-GAATATTCGATTGTTTTGAGCAAA
* * * * *
72812504 CGTAGAATTGCAACCCAACATGTTAGGGCACGATTTCGCAAATTGCCAAACATCGAATCTCGTCT
65 CGGA-AATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTG-TAAACATCGAGTCTCGTCT
72812569 TCAT
128 TCAT
72812573 TTTGAAGGATTTT
1 TTTGAAGGATTTT
72812586 TGAATGAATG
Statistics
Matches: 230, Mismatches: 40, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
131 68 0.30
132 158 0.69
133 4 0.02
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (131 bp):
TTTGAAGGATTTTAAAAAGACATGAGTGAAAACCTAAAAGGAATATTCGATTGTTTTGAGCAAAC
GGAAATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGTAAACATCGAGTCTCGTCTTCA
T
Found at i:72816632 original size:20 final size:20
Alignment explanation
Indices: 72816609--72816656 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
72816599 AGCTTCGTCC
72816609 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
72816629 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
72816649 AGCTCAAC
1 AGCTCAAC
72816657 CAAGCTTACT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:72819141 original size:21 final size:21
Alignment explanation
Indices: 72819117--72819184 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
72819107 GATTTTGAAT
72819117 GAAATCGAGAGAAGAAACAAA
1 GAAATCGAGAGAAGAAACAAA
***** *
72819138 GAAAAT-GAGAGAATCTTGAAT
1 G-AAATCGAGAGAAGAAACAAA
*
72819159 GAAATCGAGAAAAGAAACAAA
1 GAAATCGAGAGAAGAAACAAA
72819180 GAAAT
1 GAAAT
72819185 GAAAGAAAAA
Statistics
Matches: 32, Mismatches: 13, Indels: 4
0.65 0.27 0.08
Matches are distributed among these distances:
20 4 0.12
21 24 0.75
22 4 0.12
ACGTcount: A:0.59, C:0.07, G:0.22, T:0.12
Consensus pattern (21 bp):
GAAATCGAGAGAAGAAACAAA
Found at i:72819157 original size:42 final size:42
Alignment explanation
Indices: 72819095--72819191 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
72819085 AGATGATGAG
* * *
72819095 AGAAAATGAGAGGATTTTGAATGAAATCGAGAGAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
72819137 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
*
72819179 AG-AAATGAAAGAA
1 AGAAAATGAGAGAA
72819192 AAAGAAAAAG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 10 0.20
42 41 0.80
ACGTcount: A:0.57, C:0.05, G:0.24, T:0.14
Consensus pattern (42 bp):
AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
Found at i:72819218 original size:18 final size:18
Alignment explanation
Indices: 72819195--72819244 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
72819185 GAAAGAAAAA
*
72819195 GAAAAAGAGATTGAGAGT
1 GAAAAAGAGAATGAGAGT
* *
72819213 GAAAAAGAAAATGAGATT
1 GAAAAAGAGAATGAGAGT
72819231 GAAAAAGAGAATGA
1 GAAAAAGAGAATGA
72819245 AAAAGAGTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.58, C:0.00, G:0.28, T:0.14
Consensus pattern (18 bp):
GAAAAAGAGAATGAGAGT
Found at i:72819221 original size:24 final size:24
Alignment explanation
Indices: 72819188--72819269 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
72819178 AAGAAATGAA
72819188 AGAAAAAGAAAAAGAGATTGAGAG
1 AGAAAAAGAAAAAGAGATTGAGAG
* * * *
72819212 TGAAAAAGAAAATGAGATTGAAAA
1 AGAAAAAGAAAAAGAGATTGAGAG
* * *
72819236 AGAGAATGAAAAAGAGTTTGAGAG
1 AGAAAAAGAAAAAGAGATTGAGAG
72819260 AGAAAAAGAA
1 AGAAAAAGAA
72819270 TGTGAACAAG
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.61, C:0.00, G:0.27, T:0.12
Consensus pattern (24 bp):
AGAAAAAGAAAAAGAGATTGAGAG
Found at i:72820912 original size:20 final size:20
Alignment explanation
Indices: 72820889--72820942 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
72820879 AGCTCCGTCC
72820889 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** **
72820909 AGCTCGTTTCAGCTTGTTTG
1 AGCTCAACTCAGCTCATTTG
*
72820929 AGCTCAACTGAGCT
1 AGCTCAACTCAGCT
72820943 TACTTTCAGC
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.20, C:0.26, G:0.20, T:0.33
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:72824089 original size:20 final size:21
Alignment explanation
Indices: 72824064--72824114 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
72824054 GGCCTGCTCG
72824064 CACGGGCA-TGTCCCAAGCCA
1 CACGGGCAGTGTCCCAAGCCA
*
72824084 CACGGG-AGTGTCCCATGCCA
1 CACGGGCAGTGTCCCAAGCCA
*
72824104 CATGGGC-GTGT
1 CACGGGCAGTGT
72824115 GGCCCTTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 26 0.96
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (21 bp):
CACGGGCAGTGTCCCAAGCCA
Found at i:72834748 original size:46 final size:47
Alignment explanation
Indices: 72834686--72834789 Score: 174
Period size: 46 Copynumber: 2.2 Consensus size: 47
72834676 CCCTTCGGGA
* *
72834686 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
*
72834733 CTTA-CACATATATACACTTTCTCATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
72834779 CTTATCACATA
1 CTTATCACATA
72834790 ATTAATACTA
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
46 43 0.81
47 10 0.19
ACGTcount: A:0.27, C:0.31, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCGGC
Found at i:72840324 original size:55 final size:55
Alignment explanation
Indices: 72840246--72840502 Score: 209
Period size: 55 Copynumber: 4.8 Consensus size: 55
72840236 ATTAGGGTTT
72840246 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
* ** * * *
72840301 AAGGATACCGTGTAAGACCATGTCAAAACATGGC-ATTGATAAGTTATTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGT-TTCTAAGGC
* * * * * *
72840356 AAAGG-T-CCTGTGTAAGGCCATGCCAAGGCATGAC-ATTGGTGA-G-CTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGC
* * *
72840409 AAGGATACCATGTAAGACGATGTCGAGACATGGCAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
* * *
72840458 AAGGATACCATGTGAGACCATGAC-AGGTCATGG-AAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGG-CATGGCAATTGGTAAGGT
72840503 ACCCGTGTAT
Statistics
Matches: 162, Mismatches: 29, Indels: 27
0.74 0.13 0.12
Matches are distributed among these distances:
48 4 0.02
49 32 0.20
50 2 0.01
52 7 0.04
53 31 0.19
54 16 0.10
55 66 0.41
56 4 0.02
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.23
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGTCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:72862154 original size:40 final size:39
Alignment explanation
Indices: 72862058--72862198 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
72862048 ATGATGTCCG
* * * *
72862058 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGCTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCC
72862097 GGACTAAGAT-CCG-AGGCATTTGTGTGAGTTACTAAATCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGTGAGTTACTAAATCC
* *
72862136 AGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA-CC
1 -GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTA-AATCC
*
72862176 GGGCTATGTCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGCATTTG
72862199 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
38 1 0.01
39 25 0.29
40 57 0.66
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAATCC
Found at i:72870990 original size:12 final size:12
Alignment explanation
Indices: 72870955--72870992 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
72870945 CTACACACGC
*
72870955 CCGTGTGCCAGG
1 CCGTGTGCTAGG
72870967 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
72870979 CCGTGTGTTAGG
1 CCGTGTGCTAGG
72870991 CC
1 CC
72870993 ATGCCAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.29, G:0.39, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:72875231 original size:40 final size:40
Alignment explanation
Indices: 72875083--72875233 Score: 187
Period size: 40 Copynumber: 3.7 Consensus size: 40
72875073 ACTCGAATTC
** *
72875083 TCGCACACTAAATGCCAATACATAGATGAAGCTAT-TTTAA
1 TCGCACACTAAATGCC-ATACATAGCCGAAGCTATCTTGAA
* * * *
72875123 TCCTGCACATTAAGTGCCATACATAGCCAAAGCTGTCTTGAA
1 T-C-GCACACTAAATGCCATACATAGCCGAAGCTATCTTGAA
* *
72875165 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTTGAA
1 TCGCACACTAAATGCCATACATAGCCGAAGCTATCTTGAA
72875205 TCGCACACTAAATGCCATACATAGCCGAA
1 TCGCACACTAAATGCCATACATAGCCGAA
72875234 TTGTCATCCA
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
40 62 0.65
41 16 0.17
42 17 0.18
ACGTcount: A:0.36, C:0.26, G:0.15, T:0.24
Consensus pattern (40 bp):
TCGCACACTAAATGCCATACATAGCCGAAGCTATCTTGAA
Found at i:72887205 original size:40 final size:39
Alignment explanation
Indices: 72887102--72887259 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 39
72887092 GATGATAACC
*
72887102 GGGCTAAGTCCCGAAGGCATTTGTGCTG-GTGACTA-ATTCT
1 GGGCTAAGTCCCAAAGGCATTTGTGC-GAGT-ACTATA-TCT
*
72887142 GGGCTAAG-CCCGAAGGCATTTGTGCGAGCTACTATATCT
1 GGGCTAAGTCCCAAAGGCATTTGTGCGAG-TACTATATCT
72887181 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAATC-
1 GGGCTAAGTCCCAAAGGCATTTGTGCGAG-TACTAT-ATCT
*
72887221 GGGCTAAGTCCCAAAGGCATTTGTGCAAGTAGCTATATC
1 GGGCTAAGTCCCAAAGGCATTTGTGCGAGTA-CTATATC
72887260 CGGCTAAATT
Statistics
Matches: 109, Mismatches: 3, Indels: 13
0.87 0.02 0.10
Matches are distributed among these distances:
38 1 0.01
39 38 0.35
40 67 0.61
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCCAAAGGCATTTGTGCGAGTACTATATCT
Found at i:72887265 original size:79 final size:79
Alignment explanation
Indices: 72887103--72887266 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
72887093 ATGATAACCG
* * * *
72887103 GGCTAAGTCCCGAAGGCATTTGTGCTGGTGACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCG
1 GGCTAAGTCCCAAAGGCATTTGTGCTGGTGACTAAATCTGGGCTAAGCCCAAAGGCATTTGTGCA
*
72887168 AGCTACTATATCTG
66 AGCTACTATATCTC
*
72887182 GGCTAAGTCCCAAAGGCATTTGTGC-GAGTTACTATAATC-GGGCTAAGTCCCAAAGGCATTTGT
1 GGCTAAGTCCCAAAGGCATTTGTGCTG-GTGACTA-AATCTGGGCTAAG-CCCAAAGGCATTTGT
72887245 GCAAG-TAGCTATATC-C
63 GCAAGCTA-CTATATCTC
72887261 GGCTAA
1 GGCTAA
72887267 ATTTCGAAGG
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 46 0.61
80 28 0.37
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
GGCTAAGTCCCAAAGGCATTTGTGCTGGTGACTAAATCTGGGCTAAGCCCAAAGGCATTTGTGCA
AGCTACTATATCTC
Found at i:72892568 original size:22 final size:22
Alignment explanation
Indices: 72892524--72892575 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
72892514 TGATAATCTT
*
72892524 TAATTTATAATTATATCTATTA
1 TAATTTATAATTAAATCTATTA
*
72892546 TAATTTATATATTAAAT-TTTTA
1 TAATTTATA-ATTAAATCTATTA
72892568 TCAATTTA
1 T-AATTTA
72892576 GCATAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TAATTTATAATTAAATCTATTA
Found at i:72892646 original size:17 final size:18
Alignment explanation
Indices: 72892620--72892653 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72892610 TTTTTGTTTA
72892620 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
72892637 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
72892654 ATTTTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:72900011 original size:27 final size:26
Alignment explanation
Indices: 72899974--72900085 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
72899964 AGCATGGCTG
*
72899974 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
* * *
72900000 CCAGATACAGATAATCGTGCCAAAACCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* *
72900028 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
72900055 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
72900082 CCAG
1 CCAG
72900086 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 6 0.08
27 50 0.70
28 15 0.21
ACGTcount: A:0.38, C:0.23, G:0.21, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:72902553 original size:39 final size:39
Alignment explanation
Indices: 72902509--72902667 Score: 255
Period size: 39 Copynumber: 4.1 Consensus size: 39
72902499 ATGCAAGACA
* * *
72902509 CTGGAAATGTATCTGGGCTAAAGTCCCCCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
*
72902548 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
72902587 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
** *
72902626 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
72902665 CTG
1 CTG
72902668 ATAATATAAT
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.21, C:0.26, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
Found at i:72905282 original size:24 final size:24
Alignment explanation
Indices: 72905255--72905325 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
72905245 CTAGATTTCC
**
72905255 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72905279 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
72905303 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
72905326 CTCCTGACAA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:72910287 original size:46 final size:46
Alignment explanation
Indices: 72910237--72910409 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
72910227 TGGTTGAGCA
*
72910237 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
72910283 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* ** *
72910330 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGTTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
72910376 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
72910410 GGGCGGGTTA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:72910393 original size:93 final size:93
Alignment explanation
Indices: 72910234--72910404 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
72910224 GGATGGTTGA
* * *
72910234 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72910299 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
** * *
72910327 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCGTTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
72910392 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
72910405 ACTTAGGGCG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:72910670 original size:19 final size:20
Alignment explanation
Indices: 72910633--72910670 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
72910623 ATAAGGTGGT
72910633 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
72910653 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
72910671 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:72913326 original size:22 final size:20
Alignment explanation
Indices: 72913277--72913326 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
72913267 TATTTTAAGT
72913277 ATAATTTAATTATTTTATAA
1 ATAATTTAATTATTTTATAA
*
72913297 A-AA-TTAATTATTTTTTGACA
1 ATAATTTAATTATTTTAT-A-A
72913317 ATAATTTAAT
1 ATAATTTAAT
72913327 CGAAACGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 12 0.48
19 3 0.12
20 3 0.12
21 2 0.08
22 5 0.20
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (20 bp):
ATAATTTAATTATTTTATAA
Found at i:72915228 original size:27 final size:27
Alignment explanation
Indices: 72915161--72915229 Score: 84
Period size: 27 Copynumber: 2.6 Consensus size: 27
72915151 TAATAATGCA
** *
72915161 GCATAGTTGCCAGAAACAGTAAATGTG
1 GCATAGTCACCAGTAACAGTAAATGTG
* * *
72915188 GCAAAGCCACCAGTAACAGTGAATGTG
1 GCATAGTCACCAGTAACAGTAAATGTG
72915215 GCATAGTCACCAGTA
1 GCATAGTCACCAGTA
72915230 TATAACTTCC
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
GCATAGTCACCAGTAACAGTAAATGTG
Found at i:72915400 original size:27 final size:27
Alignment explanation
Indices: 72915370--72915542 Score: 211
Period size: 27 Copynumber: 6.4 Consensus size: 27
72915360 GGGCATAATC
* *
72915370 GTCATTTTACCATACAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
72915397 GTCATTTTACCCTATAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
72915424 GTCACTTTATCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
72915451 GTCATTTTACCCTACAGGGGCATTATG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
72915478 CTCATTTTACCCTACAAGGGTATTCCG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
72915505 GTCATTTTACCCTATAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
72915532 ATCATTTTACC
1 GTCATTTTACC
72915543 TATTTTGGGG
Statistics
Matches: 121, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:72919650 original size:14 final size:15
Alignment explanation
Indices: 72919631--72919662 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
72919621 ATTTTAAAGA
72919631 TTAAAATT-GGTTTT
1 TTAAAATTAGGTTTT
72919645 TTAAAATTAGGTTTT
1 TTAAAATTAGGTTTT
72919660 TTA
1 TTA
72919663 GACGGTGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (15 bp):
TTAAAATTAGGTTTT
Found at i:72925543 original size:55 final size:55
Alignment explanation
Indices: 72925459--72925571 Score: 208
Period size: 55 Copynumber: 2.1 Consensus size: 55
72925449 GACTTGTGTG
*
72925459 ATGATTGGGTTAGTTGATCTGAATTTATGTTAGTTATCGTTAATCCGTAAGTCTA
1 ATGATTGGGTTAGTTGATCTGAATTTATGTTAGCTATCGTTAATCCGTAAGTCTA
*
72925514 ATGATTGGGTTAGTTGATGTGAATTTATGTTAGCTATCGTTAATCCGTAAGTCTA
1 ATGATTGGGTTAGTTGATCTGAATTTATGTTAGCTATCGTTAATCCGTAAGTCTA
72925569 ATG
1 ATG
72925572 TGTTAGTGAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (55 bp):
ATGATTGGGTTAGTTGATCTGAATTTATGTTAGCTATCGTTAATCCGTAAGTCTA
Found at i:72926220 original size:26 final size:27
Alignment explanation
Indices: 72926191--72926250 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
72926181 CCACATATAT
*
72926191 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
72926217 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
72926244 ATATCTG
1 ATATCTG
72926251 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:72928747 original size:27 final size:27
Alignment explanation
Indices: 72928716--72928941 Score: 263
Period size: 27 Copynumber: 8.4 Consensus size: 27
72928706 GGCATAATCA
* * *
72928716 TCATTTTACCATACAGGGGTATTATGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
72928743 TCATTTTACCCTATAGAGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
72928770 TCATTTTACCCTATAGAGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
72928797 TCATTTTATCCTACAGGGGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* *
72928824 TCAGTTTACCCTACAAGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
* * *
72928851 ACATTTTACCCTACAAGGGCATTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
* * * *
72928878 TCATTTTATCCTATAGGAGTATTACGG
1 TCATTTTACCCTACAGGGGCATTACGG
** *
72928905 TCATTTTACCCTACAGGGGTTTTACGA
1 TCATTTTACCCTACAGGGGCATTACGG
72928932 TCATTTTACC
1 TCATTTTACC
72928942 TATTTTGGGG
Statistics
Matches: 171, Mismatches: 28, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 171 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGG
Found at i:72928845 original size:81 final size:81
Alignment explanation
Indices: 72928715--72928941 Score: 298
Period size: 81 Copynumber: 2.8 Consensus size: 81
72928705 GGGCATAATC
* *
72928715 ATCATTTTA-CCATACAGGGGTATTATGGTCATTTTACCCTA-TAGAGGCATTACGGTCATTTTA
1 ATCATTTTATCC-TACAGGGGTATTACGGTCATTTTACCCTACAAG-GGCATTACGGTCATTTTA
*
72928778 CCCTA-TAGAGGCATTACG
64 CCCTACAAG-GGCATTACG
* * *
72928796 GTCATTTTATCCTACAGGGGTATTACGGTCAGTTTACCCTACAAGGGCATTACGGACATTTTACC
1 ATCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACC
72928861 CTACAAGGGCATTACG
66 CTACAAGGGCATTACG
* * * ** *
72928877 ATCATTTTATCCTATAGGAGTATTACGGTCATTTTACCCTACAGGGGTTTTACGATCATTTTACC
1 ATCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACC
72928942 TATTTTGGGG
Statistics
Matches: 128, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
81 122 0.95
82 6 0.05
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (81 bp):
ATCATTTTATCCTACAGGGGTATTACGGTCATTTTACCCTACAAGGGCATTACGGTCATTTTACC
CTACAAGGGCATTACG
Found at i:72931026 original size:50 final size:52
Alignment explanation
Indices: 72930949--72931094 Score: 179
Period size: 50 Copynumber: 2.8 Consensus size: 52
72930939 TTTTAAACTT
*
72930949 ACCATTGCCATGTATTGACATAGTCTTACGTGGTATCATTGCCATATGAA-C
1 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCCATATGAACC
* * *
72931000 A-CATTGTCATGTCTTGACATAGTCTTACGTGGTATCCTTGCCTTATGAACTC
1 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCCATATGAAC-C
* * * * * *
72931052 ACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCC
1 ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCC
72931095 TTATAGTAGT
Statistics
Matches: 81, Mismatches: 11, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
50 44 0.54
51 1 0.01
52 2 0.02
53 34 0.42
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (52 bp):
ACCATTGCCATGTCTTGACATAGTCTTACGTGGTATCATTGCCATATGAACC
Found at i:72931134 original size:56 final size:53
Alignment explanation
Indices: 72930944--72931190 Score: 176
Period size: 50 Copynumber: 4.6 Consensus size: 53
72930934 TTCCTTTTTA
* * * * * * * *
72930944 AACTTACCATTGCCATGTATTGACATAGTCTTACGTGGTATCATTGCCATATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * * *
72930997 AA--CA-CATTGTCATGTCTTGACATAGTCTTACGTGGTATCCTTGCCTTATG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
* * * *
72931047 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
** * * *** * *
72931101 TAGTTTATCAATGCCATTGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCAATGCCA-TGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-G
* * *
72931157 AACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AACTCACCAATGCCATGTCTTGACATGGTCTTAC
72931191 TTGGTAACCT
Statistics
Matches: 158, Mismatches: 30, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
50 44 0.28
51 1 0.01
52 2 0.01
53 40 0.25
54 18 0.11
55 22 0.14
56 31 0.20
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (53 bp):
AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG
Done.