Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 228 of 295
Found at i:72934490 original size:40 final size:40
Alignment explanation
Indices: 72934417--72934597 Score: 294
Period size: 40 Copynumber: 4.5 Consensus size: 40
72934407 ACCCAAGTAT
* * *
72934417 CTTCGGGATTTAG-CCGAATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
72934456 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72934496 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
72934536 CTTCAGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
72934576 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
72934598 CATTCGAATA
Statistics
Matches: 133, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 11 0.08
40 121 0.91
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:72940757 original size:24 final size:24
Alignment explanation
Indices: 72940725--72940795 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
72940715 CTGTCAGGAG
72940725 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
72940749 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* **
72940773 AGTATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
72940796 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.35, C:0.01, G:0.37, T:0.27
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:72943000 original size:27 final size:27
Alignment explanation
Indices: 72942969--72943146 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72942959 TAAATTGTAC
72942969 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
72942996 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72943022 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72943050 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72943078 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72943105 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72943132 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72943147 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72943083 original size:82 final size:81
Alignment explanation
Indices: 72942970--72943125 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72942960 AAATTGTACA
*
72942970 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGTA-GCACTAAGTG
72943034 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
*** *
72943051 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGTAGCACTAAGTG
*
72943116 TGCGAGTTGA
65 TGCGAATTGA
72943126 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72943137 original size:82 final size:81
Alignment explanation
Indices: 72942966--72943146 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72942956 GATTAAATTG
*
72942966 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGATGCACTAA
72943031 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
72943047 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGAT-GCACT
* **
72943111 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72943129 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72943147 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72951119 original size:27 final size:27
Alignment explanation
Indices: 72951088--72951265 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
72951078 TAAATTGTAC
72951088 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *** *
72951115 TGCACTAAGTGTGCGAAACGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72951141 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
72951169 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
72951197 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
72951224 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
72951251 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
72951266 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:72951202 original size:82 final size:81
Alignment explanation
Indices: 72951089--72951244 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
72951079 AAATTGTACA
*
72951089 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGTA-GCACTAAGTG
72951153 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
*** *
72951170 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGTAGCACTAAGTG
*
72951235 TGCGAGTTGA
65 TGCGAATTGA
72951245 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:72951256 original size:82 final size:81
Alignment explanation
Indices: 72951085--72951265 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
72951075 GATTAAATTG
*
72951085 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAACGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGATGCACTAA
72951150 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *** *
72951166 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGAT-GCACT
* **
72951230 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
72951248 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
72951266 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAACGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:72953406 original size:27 final size:26
Alignment explanation
Indices: 72953366--72953477 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 26
72953356 AGGAAGCGTC
* *
72953366 CTGGTGGCTATGCCATAATTATTTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGAT
* *
72953393 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCAAAT-TATCTGAT
* *
72953420 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
* * * *
72953448 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCAAATTATCTGAT
72953474 CTGG
1 CTGG
72953478 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.69
28 15 0.21
ACGTcount: A:0.16, C:0.21, G:0.23, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:72960349 original size:41 final size:40
Alignment explanation
Indices: 72960274--72960459 Score: 162
Period size: 40 Copynumber: 4.6 Consensus size: 40
72960264 ACTCGAATTC
* * * *
72960274 TCGCACACTAAGTGCTAAAACATAGCCGAAGCTATTTTAAT
1 TCGCACACTAAGTGC-CATATATAGCCGAAGCTATCTTAAT
* ***
72960315 GTCGCACACTAAGTGCC-TTTCATAGCCGAAGCTATCTCGGT
1 -TCGCACACTAAGTGCCATAT-ATAGCCGAAGCTATCTTAAT
* * * *
72960356 CTCACACACTAAGTGCCACATATAGCCAAAGCTATTTTTAAT
1 -TCGCACACTAAGTGCCATATATAGCCGAAGCTA-TCTTAAT
* * *
72960398 T-GCACACTAATTGCCATATATAGCC-AGAGCTATCTGAAA
1 TCGCACACTAAGTGCCATATATAGCCGA-AGCTATCTTAAT
72960437 TCGCACACTAAGTGCCATATATA
1 TCGCACACTAAGTGCCATATATA
72960460 TATCCAAATC
Statistics
Matches: 115, Mismatches: 24, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
39 6 0.05
40 46 0.40
41 44 0.38
42 19 0.17
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCCGAAGCTATCTTAAT
Found at i:72960421 original size:81 final size:81
Alignment explanation
Indices: 72960272--72960459 Score: 204
Period size: 81 Copynumber: 2.3 Consensus size: 81
72960262 ATACTCGAAT
* * * *
72960272 TCTCGCACACTAAGTGCTAAAACATAGCCGAAGCTATTTTAATGTCGCACACTAAGTGCCTTTCA
1 TCTCGCACACTAAGTGC-CAAATATAGCCAAAGCTATTTTAATGTCGCACACTAAGTGCCTATCA
*
72960337 TAGCC-GAAGCTATCTCGG
65 TAGCCAG-AGCTATCT-GA
* * *
72960355 TCTCACACACTAAGTGCCACATATAGCCAAAGCTATTTTTAAT-T-GCACACTAATTGCCATAT-
1 TCTCGCACACTAAGTGCCAAATATAGCCAAAGCTA-TTTTAATGTCGCACACTAAGTGCC-TATC
72960417 ATAGCCAGAGCTATCTGA
64 ATAGCCAGAGCTATCTGA
** *
72960435 AATCGCACACTAAGTGCCATATATA
1 TCTCGCACACTAAGTGCCAAATATA
72960460 TATCCAAATC
Statistics
Matches: 90, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
80 22 0.24
81 27 0.30
82 18 0.20
83 23 0.26
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (81 bp):
TCTCGCACACTAAGTGCCAAATATAGCCAAAGCTATTTTAATGTCGCACACTAAGTGCCTATCAT
AGCCAGAGCTATCTGA
Found at i:72963625 original size:40 final size:40
Alignment explanation
Indices: 72963573--72963675 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
72963563 TATCTCGGTC
* *
72963573 TCACACATTAAGTGCCATATATAGCCAAAGCTATTTCAAA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCAAA
*
72963613 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCGAA
1 TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCAAA
*
72963653 TCGCACACTAAGTGCCATATATA
1 TCACACACTAAGTGCCATATATA
72963676 TATACGAATC
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (40 bp):
TCACACACTAAGTGCCATATATAGCCAAAGCTATCTCAAA
Found at i:72963648 original size:81 final size:81
Alignment explanation
Indices: 72963511--72963675 Score: 192
Period size: 81 Copynumber: 2.0 Consensus size: 81
72963501 GAGCCAAAAC
* * * * *** * * *
72963511 ATAGCCAAAGCTATTTTAATCTCACACACTGAGTGCCTTTCATAGTTGAAGTTATCTCG-GTCTC
1 ATAGCCAAAGCTATTTCAATATCACACACTAAGTGCCTATCATAGCCAAAGCTATCTCGAATCGC
72963575 ACACATTAAGTGCCATAT
66 ACAC--TAAGTGCCATAT
72963593 ATAGCCAAAGCTATTTCAA-ATCACACACTAAGTGCCATAT-ATAGCCAAAGCTATCTCGAATCG
1 ATAGCCAAAGCTATTTCAATATCACACACTAAGTGCC-TATCATAGCCAAAGCTATCTCGAATCG
72963656 CACACTAAGTGCCATAT
65 CACACTAAGTGCCATAT
72963673 ATA
1 ATA
72963676 TATACGAATC
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
80 15 0.21
81 29 0.41
82 27 0.38
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.28
Consensus pattern (81 bp):
ATAGCCAAAGCTATTTCAATATCACACACTAAGTGCCTATCATAGCCAAAGCTATCTCGAATCGC
ACACTAAGTGCCATAT
Found at i:72981003 original size:14 final size:15
Alignment explanation
Indices: 72980986--72981014 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
72980976 TCACAAAAAT
72980986 TTCACACAT-ATAAA
1 TTCACACATAATAAA
72981000 TTCACACATAATAAA
1 TTCACACATAATAAA
72981015 CACTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:72981330 original size:17 final size:19
Alignment explanation
Indices: 72981294--72981330 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
72981284 AAAGCCCATA
72981294 ACATGGCCCATGTGGGCCC
1 ACATGGCCCATGTGGGCCC
*
72981313 ACAT-GCCCTTGT-GGCCC
1 ACATGGCCCATGTGGGCCC
72981330 A
1 A
72981331 ATAATCCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 7 0.41
19 4 0.24
ACGTcount: A:0.16, C:0.38, G:0.27, T:0.19
Consensus pattern (19 bp):
ACATGGCCCATGTGGGCCC
Found at i:72992576 original size:17 final size:18
Alignment explanation
Indices: 72992549--72992582 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72992539 AATTAAATAT
72992549 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
72992567 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
72992583 TAAACAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:73013751 original size:37 final size:37
Alignment explanation
Indices: 73013692--73013793 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
73013682 AGCTCAGACG
* * *
73013692 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
73013729 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
73013766 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
73013794 TAGAGCTCAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:73013983 original size:47 final size:47
Alignment explanation
Indices: 73013912--73014276 Score: 572
Period size: 47 Copynumber: 7.7 Consensus size: 47
73013902 CCCTTCGGGA
* * * * * *
73013912 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
73013959 CCTATCACATATATGCACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73014006 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
73014053 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73014100 CTTATCACATATATACACTTTCACA-TCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73014146 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
73014195 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
73014242 CTTATCTCATAAATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
73014277 AGAATCCTAA
Statistics
Matches: 298, Mismatches: 16, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 29 0.10
47 223 0.75
48 17 0.06
49 29 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:73014231 original size:189 final size:188
Alignment explanation
Indices: 73013912--73014274 Score: 586
Period size: 189 Copynumber: 1.9 Consensus size: 188
73013902 CCCTTCGGGA
* * * * *
73013912 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATGCAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
73013977 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* *
73014042 GGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACGTCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATAAATACA-TGTTCACATCCATCACGTCGGCCATTAGGC
* *
73014100 CTTATCACATATATACACTTTCACAT-CATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
73014164 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
73014229 TCGGCCATTAGGCCTTATCTCATAAATGCATGTTCACATCCATCAC
129 TCGGCCATTAGGCCTTATCACATAAATACATGTTCACATCCATCAC
73014275 ATAGAATCCT
Statistics
Matches: 161, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
187 23 0.14
188 26 0.16
189 112 0.70
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATAAATACATGTTCACATCCATCACGTCGGCCATTAGGC
Found at i:73031022 original size:29 final size:29
Alignment explanation
Indices: 73030959--73031026 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
73030949 TAATCAACCG
73030959 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
73030988 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
73031017 CGCACACTTA
1 CGCACACTTA
73031027 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:73031139 original size:174 final size:174
Alignment explanation
Indices: 73030848--73031175 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
73030838 AACTCAAGGT
* *
73030848 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
73030913 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
73030978 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
73031022 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
73031087 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
73031152 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
73031176 TGTACAATTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:73031167 original size:29 final size:30
Alignment explanation
Indices: 73031128--73031206 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
73031118 CTTAATAATC
73031128 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
73031158 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
73031187 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
73031207 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:73056236 original size:49 final size:49
Alignment explanation
Indices: 73056180--73056404 Score: 187
Period size: 49 Copynumber: 4.7 Consensus size: 49
73056170 ATCTGGTATG
* *
73056180 CATAGTAGCCTGCACTTAGTAATACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* * * *
73056229 CATAGTAGCCTGCACTTAGTACTACACACGTGACC---TAACC-AT-CT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* * * * * * * ** *
73056273 GATA-CA--CTGCACTGAGTCCCACACACGTGATCGAAGTTATCAAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGGTACA
* *
73056321 CATAGTAGCCTGCACTTAGTACTACACATGCGACCGATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
* * *
73056370 CGTAATAGCCTGCACTTAGTACTACACACGTGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
73056405 TCACAATAGA
Statistics
Matches: 134, Mismatches: 32, Indels: 20
0.72 0.17 0.11
Matches are distributed among these distances:
41 21 0.16
42 1 0.01
43 1 0.01
44 4 0.03
45 1 0.01
46 7 0.05
47 1 0.01
48 4 0.03
49 73 0.54
50 2 0.01
51 19 0.14
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGGTACA
Found at i:73066374 original size:24 final size:24
Alignment explanation
Indices: 73066342--73066390 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
73066332 ACGAGTTTAT
* *
73066342 TATTCTCAGCTCATAAGAGGTTAC
1 TATTCTCAGCCCATAAGAGATTAC
*
73066366 TATTCTCAGCCCATCAGAGATTAC
1 TATTCTCAGCCCATAAGAGATTAC
73066390 T
1 T
73066391 GTTTCCAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (24 bp):
TATTCTCAGCCCATAAGAGATTAC
Found at i:73066634 original size:20 final size:19
Alignment explanation
Indices: 73066584--73066634 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
73066574 AAAAGCTATG
* *
73066584 TGTTACACGGATGAATTAC
1 TGTTATACGGATGAAATAC
*
73066603 TGTTATATGGATGAAATAC
1 TGTTATACGGATGAAATAC
73066622 TGATTATACGGAT
1 TG-TTATACGGAT
73066635 AAGTTATTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.35
Consensus pattern (19 bp):
TGTTATACGGATGAAATAC
Found at i:73074543 original size:28 final size:28
Alignment explanation
Indices: 73074511--73074630 Score: 125
Period size: 28 Copynumber: 4.2 Consensus size: 28
73074501 ATTGCATGAC
*
73074511 TATGAATGTGATTGGGCCTAACGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* * *
73074539 TATGAAAGTGATTGGGCTTGATGGGCCA
1 TATGAATGTGATTGGGCCTAATGGGCCA
* * *
73074567 TATGAATGTGATTGAGTCC-GATTGGCCA
1 TATGAATGTGATTG-GGCCTAATGGGCCA
* *
73074595 TATGAATGAGATTGGGCCTAAAGGGGCCA
1 TATGAATGTGATTGGGCCT-AATGGGCCA
*
73074624 AATGAAT
1 TATGAAT
73074631 AAGTATGGAT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
27 3 0.04
28 58 0.77
29 14 0.19
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTAATGGGCCA
Found at i:73075893 original size:17 final size:18
Alignment explanation
Indices: 73075858--73075893 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
73075848 ATTTTAAAGA
73075858 AAGGTTTTCAATGAAAAC
1 AAGGTTTTCAATGAAAAC
*
73075876 AAGGTTTTCGAT-AAAAC
1 AAGGTTTTCAATGAAAAC
73075893 A
1 A
73075894 CTTCAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.44, C:0.11, G:0.17, T:0.28
Consensus pattern (18 bp):
AAGGTTTTCAATGAAAAC
Found at i:73076189 original size:48 final size:49
Alignment explanation
Indices: 73076126--73076229 Score: 133
Period size: 48 Copynumber: 2.1 Consensus size: 49
73076116 TTACCGATGT
*
73076126 ATCAGCTTGTAAGAGCTTATTG-TTCTCAGC-TCATAAAAGCTTACTGTTC
1 ATCAGCTTGTAAGAGCTTACTGTTTC-CAGCTTCATAAAA-CTTACTGTTC
* * *
73076175 -TCAGCTTGTCAGAGCTTACTGTTTCCAGCTTGATACAACTTACTGTTC
1 ATCAGCTTGTAAGAGCTTACTGTTTCCAGCTTCATAAAACTTACTGTTC
73076223 ATCAGCT
1 ATCAGCT
73076230 CAGGAGGAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
48 33 0.69
49 15 0.31
ACGTcount: A:0.24, C:0.23, G:0.16, T:0.37
Consensus pattern (49 bp):
ATCAGCTTGTAAGAGCTTACTGTTTCCAGCTTCATAAAACTTACTGTTC
Found at i:73076190 original size:24 final size:24
Alignment explanation
Indices: 73076127--73076229 Score: 104
Period size: 24 Copynumber: 4.2 Consensus size: 24
73076117 TACCGATGTA
*
73076127 TCAGCTTGTAAGAGCTTATTGTTC
1 TCAGCTTGTAAGAGCTTACTGTTC
** *
73076151 TCAGCTCATAAAAGCTTACTGTTC
1 TCAGCTTGTAAGAGCTTACTGTTC
*
73076175 TCAGCTTGTCAGAGCTTACTGTT-
1 TCAGCTTGTAAGAGCTTACTGTTC
73076198 TCCAGCTTGATACA-A-CTTACTGTTC
1 T-CAGCTTG-TA-AGAGCTTACTGTTC
73076223 ATCAGCT
1 -TCAGCT
73076230 CAGGAGGAGC
Statistics
Matches: 65, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
23 1 0.02
24 55 0.85
25 7 0.11
26 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (24 bp):
TCAGCTTGTAAGAGCTTACTGTTC
Found at i:73081053 original size:6 final size:6
Alignment explanation
Indices: 73081044--73081122 Score: 72
Period size: 6 Copynumber: 12.8 Consensus size: 6
73081034 TATTAGAACT
* *
73081044 AGAATC AGAATC AGAATC AGAATC AGGTAA-C AGAATC AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
* *
73081093 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
73081123 GTGAATACAA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.07
6 48 0.79
7 6 0.10
8 3 0.05
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:73081077 original size:25 final size:25
Alignment explanation
Indices: 73081049--73081119 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
73081039 GAACTAGAAT
*
73081049 CAGAATCAGAATCAGAATCAGGTAA
1 CAGAATCAGAATCAAAATCAGGTAA
* *
73081074 CAGAATCAAAATCAAAATCA-GTAT
1 CAGAATCAGAATCAAAATCAGGTAA
73081098 CAGGTAA-CAGAATCAAAATCAG
1 CA-G-AATCAGAATCAAAATCAG
73081120 AATGTGAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
24 5 0.13
25 32 0.82
26 2 0.05
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (25 bp):
CAGAATCAGAATCAAAATCAGGTAA
Found at i:73081080 original size:31 final size:31
Alignment explanation
Indices: 73081044--73081122 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
73081034 TATTAGAACT
*
73081044 AGAATCAGAATCAGAATCAGAATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
* *
73081075 AGAATCAAAATCAAAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATCAGGTAAC
73081106 AGAATCAAAATCAGAAT
1 AGAATCAAAATCAGAAT
73081123 GTGAATACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.18
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATCAGGTAAC
Found at i:73081296 original size:27 final size:26
Alignment explanation
Indices: 73081254--73081355 Score: 132
Period size: 27 Copynumber: 3.8 Consensus size: 26
73081244 GCTCAGTTAT
* *
73081254 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
73081281 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
*
73081307 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* *
73081335 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
73081356 TTAACAGAAT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
26 7 0.10
27 53 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:73082061 original size:27 final size:27
Alignment explanation
Indices: 73082003--73082251 Score: 261
Period size: 27 Copynumber: 9.3 Consensus size: 27
73081993 AGGGGCAAAA
* * * *
73082003 TGGTAATTTTACCCCACA-AGGTATCT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
73082029 CGGTAATTCCACCCTATAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
73082056 TAGTAATTCTACCCTACAGGGGTATTC
1 TGGTAATTCTACCCTACAGGGGTATTT
**
73082083 CAGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
73082110 TGGTAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
73082137 CGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* *
73082164 CGGTAATTTTACCCTACA-GGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
73082190 TGGTAGTTCTGCCTTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
** ** *
73082217 CAGTAATTCTA-CAAAGTAGGGGTATTT
1 TGGTAATTCTACCCTA-CAGGGGTATTT
73082244 TGGTAATT
1 TGGTAATT
73082252 TGGTAAACTA
Statistics
Matches: 186, Mismatches: 34, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 36 0.19
27 150 0.81
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:73082131 original size:81 final size:80
Alignment explanation
Indices: 73082005--73082228 Score: 288
Period size: 81 Copynumber: 2.8 Consensus size: 80
73081995 GGGCAAAATG
* * * * * * *
73082005 GTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTATAGGGGTATTTTAGTAATTCTACCC
1 GTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCC
73082070 TACAGGGGTATTCCA
66 TACAGGGGTATTCCA
*
73082085 GTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACCCTACAGGGGTA-TTTCGATAATTCTAC
1 GTAATTCTACCCTACA-GGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAG-TAATTCTAC
* *
73082149 CCTACAGGGGTATTTCG
64 CCTACAGGGGTATTCCA
* * * * *
73082166 GTAATTTTACCCTACAGGGTATTTTGGTAGTTCTGCCTTACAGGGGTATTTCAGTAATTCTAC
1 GTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTAC
73082229 AAAGTAGGGG
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 56 0.45
81 69 0.55
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (80 bp):
GTAATTCTACCCTACAGGGTATTTTGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCC
TACAGGGGTATTCCA
Found at i:73082268 original size:80 final size:80
Alignment explanation
Indices: 73082030--73082268 Score: 200
Period size: 80 Copynumber: 3.0 Consensus size: 80
73082020 AAGGTATCTC
* * * ** * * *
73082030 GGTAATTCCACCCTATAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTCCAGTAATTCTA
1 GGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCAAACAGGGGTATTTCGGTAATTTTA
** *
73082094 CCCTACAGGGGTATTTT
65 AACTACA-GAGTATTTT
** *
73082111 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTTTAC
1 GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCAAACAGGGGTATTTCGGTAATTTTAA
* *
73082176 CCTACAGGGTATTTT
66 ACTACAGAGTATTTT
* * * * *
73082191 GGTAGTTCTGCCTTACAGGGGTATTTC-AGTAATTCTA-CAAAGTAGGGGTATTTTGGTAATTTG
1 GGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCAAA-CAGGGGTATTTCGGTAATTT-
73082254 GTAAACTA-A-AGTATT
63 -TAAACTACAGAGTATT
73082269 CTAAACAGGG
Statistics
Matches: 137, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
79 3 0.02
80 64 0.47
81 64 0.47
82 6 0.04
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (80 bp):
GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCAAACAGGGGTATTTCGGTAATTTTAA
ACTACAGAGTATTTT
Found at i:73083877 original size:16 final size:16
Alignment explanation
Indices: 73083856--73083908 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
73083846 AATGAATCAG
73083856 TAAAAGCCAAAATGCC
1 TAAAAGCCAAAATGCC
*
73083872 TAAAAGCCGAAATGCC
1 TAAAAGCCAAAATGCC
* *
73083888 GAAATGCCGAAAA-GCC
1 TAAAAGCC-AAAATGCC
73083904 -AAAAG
1 TAAAAG
73083909 TTGGGCTACG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 4 0.13
16 24 0.77
17 3 0.10
ACGTcount: A:0.49, C:0.23, G:0.19, T:0.09
Consensus pattern (16 bp):
TAAAAGCCAAAATGCC
Found at i:73083890 original size:8 final size:8
Alignment explanation
Indices: 73083865--73083899 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
73083855 GTAAAAGCCA
*
73083865 AAATGCCT
1 AAATGCCG
*
73083873 AAAAGCCG
1 AAATGCCG
73083881 AAATGCCG
1 AAATGCCG
73083889 AAATGCCG
1 AAATGCCG
73083897 AAA
1 AAA
73083900 AGCCAAAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.46, C:0.23, G:0.20, T:0.11
Consensus pattern (8 bp):
AAATGCCG
Found at i:73084150 original size:28 final size:29
Alignment explanation
Indices: 73084119--73084236 Score: 134
Period size: 28 Copynumber: 4.2 Consensus size: 29
73084109 GTGAGCATGA
* *
73084119 ATAT-AATATGATTTGGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
73084147 ATATGAATTTGAATTAGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* * *
73084176 ATAAGAATATGAACTGGG-CTAGTAGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
* *
73084204 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAGTGGGCC
73084232 ATATG
1 ATATG
73084237 CATGTATGTA
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
27 5 0.07
28 34 0.47
29 34 0.47
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAGTGGGCC
Found at i:73086794 original size:14 final size:14
Alignment explanation
Indices: 73086775--73086802 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73086765 AAGATTCACT
73086775 AATAATGAAAAGTC
1 AATAATGAAAAGTC
73086789 AATAATGAAAAGTC
1 AATAATGAAAAGTC
73086803 TTTACCATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
AATAATGAAAAGTC
Found at i:73087694 original size:22 final size:22
Alignment explanation
Indices: 73087668--73087711 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
73087658 TCAATCAAAA
73087668 TCATAAATCAATCAAAATTTAT
1 TCATAAATCAATCAAAATTTAT
73087690 TCATAAATCAATCAAAATTTAT
1 TCATAAATCAATCAAAATTTAT
73087712 CCTAAATATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
TCATAAATCAATCAAAATTTAT
Found at i:73088275 original size:24 final size:25
Alignment explanation
Indices: 73088212--73088288 Score: 68
Period size: 29 Copynumber: 2.9 Consensus size: 25
73088202 TATAAATCCG
*
73088212 AAAAAA-ATAAGATAAAATAAAAAT
1 AAAAAACATAAAATAAAATAAAAAT
*
73088236 AAAAATTAGTCTTAAAATAAAATAAAAAT
1 AAAAA--A--CATAAAATAAAATAAAAAT
73088265 -AAAAACATAAAATAGTAAATAAAA
1 AAAAAACATAAAATA--AAATAAAA
73088289 GTTTTTAAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
24 13 0.30
26 10 0.23
28 4 0.09
29 16 0.37
ACGTcount: A:0.73, C:0.03, G:0.04, T:0.21
Consensus pattern (25 bp):
AAAAAACATAAAATAAAATAAAAAT
Found at i:73095036 original size:48 final size:48
Alignment explanation
Indices: 73094962--73095252 Score: 404
Period size: 48 Copynumber: 6.0 Consensus size: 48
73094952 CAAGATAAAT
* * *
73094962 ATATATATGTGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
73095010 ATATGTATATGTGGTAAAGCCGAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
73095058 ATATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * **
73095108 ATATGTATATGTGGTAAAGCCGAATGACTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
73095156 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAACATGT-TGAT
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* * *
73095203 ATATGTATATTTGGTAAAGCCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
73095251 AT
1 AT
73095253 GTGTGTATAT
Statistics
Matches: 212, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
47 42 0.20
48 126 0.59
50 44 0.21
ACGTcount: A:0.38, C:0.07, G:0.23, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:73095119 original size:98 final size:98
Alignment explanation
Indices: 73094960--73095252 Score: 466
Period size: 98 Copynumber: 3.0 Consensus size: 98
73094950 TACAAGATAA
*
73094960 ATATATATATGTGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
1 ATATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
73095025 AAAGCCGAATGGCTAATATGAAATATGTATGAG
66 AAAGCCGAATGGCTAATATGAAATATGTATGAG
73095058 ATATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
1 ATATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
* *
73095123 AAAGCCGAATGACTAACATGAAATATGTATGAG
66 AAAGCCGAATGGCTAATATGAAATATGTATGAG
* * * * * *
73095156 --ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAACATGT-TGATATATGTATATTTGGT
1 ATATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
* *
73095218 AAAGCCGAATGGCTAATGTGAAATATGTAGGAG
66 AAAGCCGAATGGCTAATATGAAATATGTATGAG
73095251 AT
1 AT
73095253 GTGTGTATAT
Statistics
Matches: 180, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
95 46 0.26
96 39 0.22
98 95 0.53
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (98 bp):
ATATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGT
AAAGCCGAATGGCTAATATGAAATATGTATGAG
Found at i:73095447 original size:37 final size:37
Alignment explanation
Indices: 73095393--73095495 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
73095383 GGAAATATAT
73095393 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
* *
73095430 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
* *
73095467 TCCGGGTAAGACTCAATAACTACGTGTGG
1 TCCGGGTAAGACTCGATGACTACGTGTGG
73095496 GGACTATTCG
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACTCGATGACTACGTGTGGAGATTATG
Found at i:73101432 original size:25 final size:26
Alignment explanation
Indices: 73101372--73101447 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 26
73101362 GATTTCATCT
73101372 CATGAGAGCTTACCGATTCTCAGCTCA
1 CATG-GAGCTTACCGATTCTCAGCTCA
* *
73101399 TATGG-GCTTACCGATAT-TCAGCTCG
1 CATGGAGCTTACCGAT-TCTCAGCTCA
*
73101424 CA-GGAGCTTA-CTATTACTCAGCTC
1 CATGGAGCTTACCGATT-CTCAGCTC
73101448 GAAAGAGCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
23 1 0.02
24 5 0.12
25 30 0.73
26 2 0.05
27 3 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (26 bp):
CATGGAGCTTACCGATTCTCAGCTCA
Found at i:73101477 original size:24 final size:25
Alignment explanation
Indices: 73101443--73101507 Score: 80
Period size: 24 Copynumber: 2.7 Consensus size: 25
73101433 ACTATTACTC
* * *
73101443 AGCTCGAAAGAGCTTATCGA-TTAT
1 AGCTCGTAAGAGCATACCGATTTAT
73101467 AGCTCGTAAGAGCATACCGATTTAT
1 AGCTCGTAAGAGCATACCGATTTAT
*
73101492 AGCTCGTATGAG-ATAC
1 AGCTCGTAAGAGCATAC
73101508 ATGTACAGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
24 21 0.58
25 15 0.42
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (25 bp):
AGCTCGTAAGAGCATACCGATTTAT
Found at i:73102915 original size:27 final size:27
Alignment explanation
Indices: 73102885--73102999 Score: 142
Period size: 27 Copynumber: 4.3 Consensus size: 27
73102875 TGATTTACAA
* *
73102885 AATTATTGAAATACCCATGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
*
73102912 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTATCGAAATACCCTTGTAGGGTAG
* *
73102939 AAATA-CTGAAATACCCCTGTAGGGTAG
1 AATTATC-GAAATACCCTTGTAGGGTAG
* * *
73102966 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTATCGAAATACCCTTGTAGGGTAG
73102993 AATTATC
1 AATTATC
73103000 ATTTTGCCCC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 74 0.97
28 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.28
Consensus pattern (27 bp):
AATTATCGAAATACCCTTGTAGGGTAG
Found at i:73102927 original size:54 final size:54
Alignment explanation
Indices: 73102891--73102994 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
73102881 ACAAAATTAT
*
73102891 TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATAC
1 TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATAC
* * * *
73102945 TGAAATACCCCTGTAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAA
1 TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAA
73102995 TTATCATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (54 bp):
TGAAATACCCATGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAAAAATAC
Found at i:73103264 original size:27 final size:26
Alignment explanation
Indices: 73103193--73103307 Score: 131
Period size: 27 Copynumber: 4.3 Consensus size: 26
73103183 TGGAGGAAGC
73103193 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTATGCCAC-AATATCT
*
73103220 GTTTCTAGTGGCTATGCCACAAATATCT
1 G-TTCTGGTGGCTATGCCAC-AATATCT
* *
73103248 GTTCTGGTGGCTTTGCCACAATATTT
1 GTTCTGGTGGCTATGCCACAATATCT
* * *
73103274 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTATGCCACAATATCT
*
73103301 GTCCTGG
1 GTTCTGG
73103308 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
26 12 0.16
27 39 0.51
28 26 0.34
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTATGCCACAATATCT
Found at i:73103478 original size:6 final size:6
Alignment explanation
Indices: 73103467--73103541 Score: 82
Period size: 6 Copynumber: 12.3 Consensus size: 6
73103457 TATAGGCTTT
*
73103467 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
73103516 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
73103542 AATGTTTCTT
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
5 2 0.03
6 51 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:73105305 original size:42 final size:42
Alignment explanation
Indices: 73105253--73105445 Score: 219
Period size: 42 Copynumber: 4.5 Consensus size: 42
73105243 AGGGTTACTA
* *
73105253 AGACTATGTGTAAAAACATATCTGGGATATGACATCTATATG
1 AGACTTTGTGTAAGAACATATCTGGGATATGACATCTATATG
* *
73105295 AGACTTTGTGTAAGACCATATCTGGGATCATGACAT-TAGGGTCACTA
1 AGACTTTGTGTAAGAACATATCTGGGAT-ATGACATCTA---T-A-TG
*
73105342 AGACTATGTGTAAGAACATATCTGGGATATGACATCTATATG
1 AGACTTTGTGTAAGAACATATCTGGGATATGACATCTATATG
* * *
73105384 AGACTTTGTGTAAGACCATATCTGGGATATGGA-ATCGATAAG
1 AGACTTTGTGTAAGAACATATCTGGGATAT-GACATCTATATG
* *
73105426 AGACTTCGTGTAAGACCATA
1 AGACTTTGTGTAAGAACATA
73105446 GTTGGGCTAT
Statistics
Matches: 131, Mismatches: 12, Indels: 16
0.82 0.08 0.10
Matches are distributed among these distances:
42 82 0.63
43 10 0.08
44 1 0.01
45 1 0.01
46 8 0.06
47 29 0.22
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (42 bp):
AGACTTTGTGTAAGAACATATCTGGGATATGACATCTATATG
Found at i:73105387 original size:89 final size:89
Alignment explanation
Indices: 73105236--73105411 Score: 334
Period size: 89 Copynumber: 2.0 Consensus size: 89
73105226 ACAAATGTCG
*
73105236 TGACATTAGGGTTACTAAGACTATGTGTAAAAACATATCTGGGATATGACATCTATATGAGACTT
1 TGACATTAGGGTCACTAAGACTATGTGTAAAAACATATCTGGGATATGACATCTATATGAGACTT
73105301 TGTGTAAGACCATATCTGGGATCA
66 TGTGTAAGACCATATCTGGGATCA
*
73105325 TGACATTAGGGTCACTAAGACTATGTGTAAGAACATATCTGGGATATGACATCTATATGAGACTT
1 TGACATTAGGGTCACTAAGACTATGTGTAAAAACATATCTGGGATATGACATCTATATGAGACTT
73105390 TGTGTAAGACCATATCTGGGAT
66 TGTGTAAGACCATATCTGGGAT
73105412 ATGGAATCGA
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.31
Consensus pattern (89 bp):
TGACATTAGGGTCACTAAGACTATGTGTAAAAACATATCTGGGATATGACATCTATATGAGACTT
TGTGTAAGACCATATCTGGGATCA
Found at i:73105481 original size:43 final size:42
Alignment explanation
Indices: 73105350--73105500 Score: 155
Period size: 42 Copynumber: 3.6 Consensus size: 42
73105340 TAAGACTATG
* * * **
73105350 TGTAAGAACATATCTGGGATAT-GACATCTATATGAGACTTTG
1 TGTAAGACCATATCTGGGATATGGA-ATCGATAAGAGACTTCA
*
73105392 TGTAAGACCATATCTGGGATATGGAATCGATAAGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGAATCGATAAGAGACTTCA
* * *
73105434 TGTAAGACCATAGT-TGGGCTATTGGCATCGATACGAGA-TCTCA
1 TGTAAGACCATA-TCTGGGATA-TGGAATCGATAAGAGACT-TCA
*
73105477 TGTAATACCATATCTGGGATATGG
1 TGTAAGACCATATCTGGGATATGG
73105501 CATTGGTATG
Statistics
Matches: 94, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
42 58 0.62
43 36 0.38
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGAATCGATAAGAGACTTCA
Found at i:73114472 original size:13 final size:13
Alignment explanation
Indices: 73114450--73114482 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
73114440 AAGGAATTGT
73114450 TTAT-TAAACTAA
1 TTATCTAAACTAA
73114462 TTATCTAAACTAA
1 TTATCTAAACTAA
*
73114475 TTAACTAA
1 TTATCTAA
73114483 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:73116649 original size:27 final size:27
Alignment explanation
Indices: 73116609--73116720 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
73116599 AGGAAGCTTC
*
73116609 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
73116636 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
73116663 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
73116691 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
73116717 CTGG
1 CTGG
73116721 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:73116715 original size:54 final size:54
Alignment explanation
Indices: 73116609--73116720 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
73116599 AGGAAGCTTC
* *
73116609 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
73116663 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
73116717 CTGG
1 CTGG
73116721 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:73124575 original size:28 final size:26
Alignment explanation
Indices: 73124482--73124593 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
73124472 AGGAAGTGTC
* *
73124482 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTT
* * *
73124509 CTTGTGGCTCTGCCACATATTTTTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
73124536 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
73124564 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
73124590 CTGG
1 CTGG
73124594 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 48 0.67
28 17 0.24
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.39
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:73124590 original size:54 final size:54
Alignment explanation
Indices: 73124482--73124593 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
73124472 AGGAAGTGTC
* * * *
73124482 CTGGTGGCTATGCCACAATTATCTGATCTTGTGGCTCTGCCACATATTTTTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
73124536 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
73124590 CTGG
1 CTGG
73124594 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.15, C:0.23, G:0.22, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:73128196 original size:6 final size:6
Alignment explanation
Indices: 73128187--73128262 Score: 111
Period size: 6 Copynumber: 12.8 Consensus size: 6
73128177 AATAAAATTG
*
73128187 AAATGA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
*
73128234 AAATAA AAATAA GAATAA ATAA-AA AAATA
1 AAATAA AAATAA AAATAA A-AATAA AAATA
73128263 GGAGGATTTA
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
5 7 0.11
6 55 0.86
7 2 0.03
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:73141681 original size:43 final size:43
Alignment explanation
Indices: 73141628--73141712 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
73141618 TGAGGTATGT
*
73141628 AGCATCCGAGCTCGTTGAGAGGTTCGAGTTCATTATAGATGCG
1 AGCATCCGAGCTCGTTGAGAGGTTCGAGTTCATGATAGATGCG
* * * *
73141671 AGCATTCGAGCTCGTTGAGTGGTTTGAGTTCATGATGGATGC
1 AGCATCCGAGCTCGTTGAGAGGTTCGAGTTCATGATAGATGC
73141713 AATTCATGTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.21, C:0.16, G:0.32, T:0.31
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTTCGAGTTCATGATAGATGCG
Found at i:73153200 original size:42 final size:41
Alignment explanation
Indices: 73153078--73153224 Score: 118
Period size: 43 Copynumber: 3.4 Consensus size: 41
73153068 TTTCGTTTTG
* * *
73153078 TGATTTCGTGTATGACCATGTTTGGGAC-GATGGCATTGACTTT
1 TGATTTCATGTAAGACCATGTTTGGGACAG-TGGCA-TCA-TTT
* * * *
73153121 TGTTTTACATGTAAGACCATGTCTGGGACA-TCTGCATCATATC
1 TGATTT-CATGTAAGACCATGTTTGGGACAGT-GGCATCAT-TT
* *
73153164 TGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGATGTT
1 TGATTTCATGTAAGACCATGTTTGGGACAGTGGCATC-AT-TT
*
73153207 TGATTACATGTAAGACCA
1 TGATTTCATGTAAGACCA
73153225 CGCCTGGGAC
Statistics
Matches: 81, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
42 26 0.32
43 33 0.41
44 22 0.27
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
TGATTTCATGTAAGACCATGTTTGGGACAGTGGCATCATTT
Found at i:73153233 original size:43 final size:42
Alignment explanation
Indices: 73153125--73153247 Score: 108
Period size: 43 Copynumber: 2.9 Consensus size: 42
73153115 GACTTTTGTT
* *
73153125 TTACATGTAAGACCATGTCTGGGACA-TCTGCATCATATCTGA
1 TTACATGTAAGACCACGTCTGGGACAGT-GGCATCATATCTGA
* * * * *
73153167 TTTCGTGTAAGACC-CTGTTTGGGACAGTGGCATCGATGTTTGA
1 TTACATGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATCTGA
* *
73153210 TTACATGTAAGACCACGCCTGGGAC-GTTGGCATTATAT
1 TTACATGTAAGACCACGTCTGGGACAG-TGGCATCATAT
73153248 ATGTTCTCTG
Statistics
Matches: 63, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
42 30 0.48
43 32 0.51
44 1 0.02
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACAGTGGCATCATATCTGA
Found at i:73157271 original size:55 final size:54
Alignment explanation
Indices: 73157176--73157325 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
73157166 CTACTTTGTT
* ** * *
73157176 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
73157230 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
73157285 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
73157326 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:73157288 original size:27 final size:27
Alignment explanation
Indices: 73157148--73157325 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
73157138 TAAATTGTAC
73157148 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
73157175 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
73157201 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
73157229 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
73157257 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
73157284 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
73157311 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73157326 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:73157289 original size:82 final size:81
Alignment explanation
Indices: 73157149--73157304 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
73157139 AAATTGTACA
* * * *
73157149 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
73157214 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
73157230 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
73157293 TGTGCGAGTTGA
63 TGTGCGAATTGA
73157305 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:73165275 original size:55 final size:54
Alignment explanation
Indices: 73165180--73165329 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
73165170 CTACTTTGTT
* ** * *
73165180 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
73165234 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
73165289 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
73165330 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:73165292 original size:27 final size:27
Alignment explanation
Indices: 73165152--73165329 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
73165142 TAAATTGTAC
73165152 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
73165179 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
73165205 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
73165233 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
73165261 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
73165288 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
73165315 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
73165330 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:73165293 original size:82 final size:81
Alignment explanation
Indices: 73165153--73165308 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
73165143 AAATTGTACA
* * * *
73165153 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
73165218 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
73165234 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
73165297 TGTGCGAGTTGA
63 TGTGCGAATTGA
73165309 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:73168658 original size:23 final size:23
Alignment explanation
Indices: 73168571--73168658 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
73168561 GATATATTAG
* *
73168571 CTCGTAAGAGCTTACTGTTCTCAC
1 CTCGTCAGAGCTTACTGTT-TCAA
* * * *
73168595 CTC-TTATGAGATTACTGGTTCAT
1 CTCGTCA-GAGCTTACTGTTTCAA
*
73168618 CTCGTCAAAGCTTACTGTTTCAA
1 CTCGTCAGAGCTTACTGTTTCAA
73168641 CTCGTCAGAGCTTACTGT
1 CTCGTCAGAGCTTACTGT
73168659 GCATCAGCTC
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
23 37 0.71
24 15 0.29
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (23 bp):
CTCGTCAGAGCTTACTGTTTCAA
Found at i:73169972 original size:43 final size:42
Alignment explanation
Indices: 73169925--73170011 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 42
73169915 TGATATTTGA
73169925 ATATGAATGCATAAATGTACGAATTGTAGGTTAAATGATGTGT
1 ATATGAATGCATAAATGTACGAATTGTAGGTT-AATGATGTGT
*
73169968 ATATGAATGCATAAATGTATGAATTGTAGGTTAATGATGTGT
1 ATATGAATGCATAAATGTACGAATTGTAGGTTAATGATGTGT
73170010 AT
1 AT
73170012 TGATCGATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 12 0.28
43 31 0.72
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.37
Consensus pattern (42 bp):
ATATGAATGCATAAATGTACGAATTGTAGGTTAATGATGTGT
Found at i:73173512 original size:41 final size:43
Alignment explanation
Indices: 73173416--73173540 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 43
73173406 AACGTCCTGG
* * *
73173416 ACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAG
1 ACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAA
* *
73173459 ACAGGGTCTTACACGAAATCAAAT-T-GATGTCGA-TGTCCCAA
1 ACATGGTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAA
* *
73173500 ACATGGTATTACACGTAAATCATAA-ATCGATGCCAATGTCC
1 ACATGGTCTTACACG-AAATCA-AATATCGATGCCACTGTCC
73173541 TCGATGTGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
41 24 0.35
42 9 0.13
43 26 0.38
44 9 0.13
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
ACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAA
Found at i:73174305 original size:19 final size:18
Alignment explanation
Indices: 73174273--73174311 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
73174263 ACTAAGCAAG
73174273 ATTACAAAAACGAA-AAA
1 ATTACAAAAACGAACAAA
73174290 ATTATCAAAAATCGAACAAA
1 ATTA-CAAAAA-CGAACAAA
73174310 AT
1 AT
73174312 ACATACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 6 0.32
19 4 0.21
20 5 0.26
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (18 bp):
ATTACAAAAACGAACAAA
Found at i:73192772 original size:40 final size:40
Alignment explanation
Indices: 73192689--73192991 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
73192679 TTGAATGCTG
* * * * * *
73192689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
73192729 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
73192769 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
73192809 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
73192849 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
73192889 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
73192929 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
73192968 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
73192992 TGAACGAGGA
Statistics
Matches: 241, Mismatches: 19, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 35 0.15
40 198 0.82
41 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:73195095 original size:48 final size:48
Alignment explanation
Indices: 73195035--73195204 Score: 159
Period size: 48 Copynumber: 3.6 Consensus size: 48
73195025 ACATTACAAG
* *
73195035 AGCTAGTGTAAGACTTGTCTGGGACATGCATTGGCCCCGAGATATACC
1 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCCCGAGATATACA
* * **** ** *
73195083 AGCCAGTGTAAGACATGT-TCGGGACATGCATCGGCTTTAAGA-CGA-G
1 AGCTAGTGTAAGACATGTCT-GGGACATGCATTGGCCCCGAGATATACA
* * *
73195129 AGCTAATGTAAGACATGTTTGGGACATGCATTAGCCTCCG-GATATACA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCC-CCGAGATATACA
*
73195177 AGCTAGTGTAAGACCTGTCTGGGACATG
1 AGCTAGTGTAAGACATGTCTGGGACATG
73195205 GCGTCAGCTT
Statistics
Matches: 93, Mismatches: 24, Indels: 10
0.73 0.19 0.08
Matches are distributed among these distances:
46 31 0.33
47 4 0.04
48 58 0.62
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (48 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCCCGAGATATACA
Found at i:73195132 original size:94 final size:94
Alignment explanation
Indices: 73195033--73195204 Score: 249
Period size: 94 Copynumber: 1.8 Consensus size: 94
73195023 CCACATTACA
* * * *
73195033 AGAGCTAGTGTAAGACTTGTCTGGGACATGCATTGGCC-CCGAGATATACCAGCCAGTGTAAGAC
1 AGAGCTAATGTAAGACATGTCTGGGACATGCATTAGCCTCCG-GATATACAAGCCAGTGTAAGAC
73195097 ATGT-TCGGGACATGCATCGGCTTTAAGACG
65 ATGTCT-GGGACATGCATCGGCTTTAAGACG
* * *
73195127 AGAGCTAATGTAAGACATGTTTGGGACATGCATTAGCCTCCGGATATACAAGCTAGTGTAAGACC
1 AGAGCTAATGTAAGACATGTCTGGGACATGCATTAGCCTCCGGATATACAAGCCAGTGTAAGACA
73195192 TGTCTGGGACATG
66 TGTCTGGGACATG
73195205 GCGTCAGCTT
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
94 65 0.94
95 4 0.06
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (94 bp):
AGAGCTAATGTAAGACATGTCTGGGACATGCATTAGCCTCCGGATATACAAGCCAGTGTAAGACA
TGTCTGGGACATGCATCGGCTTTAAGACG
Found at i:73195283 original size:49 final size:49
Alignment explanation
Indices: 73195224--73195353 Score: 190
Period size: 49 Copynumber: 2.6 Consensus size: 49
73195214 TCTTATGTGT
73195224 CAGTGTAAGACCTGTTTGGGACATGGCATCGGCAC-CAATAGATGAAAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGGC-CTCAATAGATGAAAGC
* * * * *
73195273 CAGTGTAAGACCTGTCTGTGACACGGCATCGGCCTCGATATATGAAAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCAATAGATGAAAGC
73195322 CAGTGTAAGACCATGTTTGGGACATGGCATCG
1 CAGTGTAAGACC-TGTTTGGGACATGGCATCG
73195354 ACATCTTATC
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
48 1 0.01
49 54 0.76
50 16 0.23
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGGCCTCAATAGATGAAAGC
Found at i:73201190 original size:27 final size:27
Alignment explanation
Indices: 73201160--73201611 Score: 329
Period size: 27 Copynumber: 16.7 Consensus size: 27
73201150 AGGTATTTTG
* * *
73201160 GTCATTTTACCCTGTGAGGGTAAA-ATC
1 GTCATTTTACCATATAAGGG-AAATATC
*
73201187 GTCATTTTATCATATAAGGGAAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * *
73201214 GTCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * *
73201241 GTCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * *
73201268 GTCATTTTATCACATAAGGGTAATATC
1 GTCATTTTACCATATAAGGGAAATATC
*
73201295 GTCATTTTATC-TCATAA-GGACAATATC
1 GTCATTTTACCAT-ATAAGGGA-AATATC
* * *
73201322 ATCATTTTATC-TCATAAGGGCAATATC
1 GTCATTTTACCAT-ATAAGGGAAATATC
* * *
73201349 GTCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
73201376 ATCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
73201403 ATCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
73201430 ATCATTTTATCACATAAGGGAAATATT
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
73201457 GTCGTTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * *
73201484 ATCATTTTATCACATAAGGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * * *
73201511 ATCATTTTATCACATAAAGGCAATATC
1 GTCATTTTACCATATAAGGGAAATATC
* * * * *
73201538 ATTATTTTATCACAAAAGGGCAAA-ATC
1 GTCATTTTACCATATAAGGG-AAATATC
* * *
73201565 GTCATTTTATCACATAAGGGAAAAATC
1 GTCATTTTACCATATAAGGGAAATATC
* *
73201592 GTCATTTTATCACATAAGGG
1 GTCATTTTACCATATAAGGG
73201612 TTCAAGTACG
Statistics
Matches: 388, Mismatches: 30, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
26 8 0.02
27 376 0.97
28 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCATATAAGGGAAATATC
Found at i:73201218 original size:54 final size:54
Alignment explanation
Indices: 73201184--73201611 Score: 676
Period size: 54 Copynumber: 7.9 Consensus size: 54
73201174 TGAGGGTAAA
* * *
73201184 ATCGTCATTTTATCATATAAGGGAAATATCGTCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
73201238 ATCGTCATTTTATCACATAAGGGCAATATCGTCATTTTATCACATAAGGGTAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* * *
73201292 ATCGTCATTTTATCTCATAAGGACAATATCATCATTTTATCTCATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
73201346 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
73201400 ATCATCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGAAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* *
73201454 ATTGTCGTTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* * * * *
73201508 ATCATCATTTTATCACATAAAGGCAATATCATTATTTTATCACAAAAGGGCAAA
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
* * *
73201562 ATCGTCATTTTATCACATAAGGGAAAAATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGG
73201612 TTCAAGTACG
Statistics
Matches: 343, Mismatches: 31, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 343 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (54 bp):
ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAAT
Found at i:73201245 original size:81 final size:81
Alignment explanation
Indices: 73201184--73201611 Score: 667
Period size: 81 Copynumber: 5.3 Consensus size: 81
73201174 TGAGGGTAAA
* *
73201184 ATCGTCATTTTATCATATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCGTCATTTT
1 ATCGTCATTTTATCACATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCATCATTTT
73201249 ATCACATAAGGGCAAT
66 ATCACATAAGGGCAAT
* * *
73201265 ATCGTCATTTTATCACATAAGGGTAATATCGTCATTTTATCTCATAAGGACAATATCATCATTTT
1 ATCGTCATTTTATCACATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCATCATTTT
*
73201330 ATCTCATAAGGGCAAT
66 ATCACATAAGGGCAAT
* *
73201346 ATCGTCATTTTATCACATAAGGGCAATATCATCATTTTATCACATAAGGGCAATATCATCATTTT
1 ATCGTCATTTTATCACATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCATCATTTT
73201411 ATCACATAAGGGCAAT
66 ATCACATAAGGGCAAT
* * *
73201427 ATCATCATTTTATCACATAAGGGAAATATTGTCGTTTTATCACATAAGGGCAATATCATCATTTT
1 ATCGTCATTTTATCACATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCATCATTTT
73201492 ATCACATAAGGGCAAT
66 ATCACATAAGGGCAAT
* * * * * * * *
73201508 ATCATCATTTTATCACATAAAGGCAATATCATTATTTTATCACAAAAGGGCAAAATCGTCATTTT
1 ATCGTCATTTTATCACATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCATCATTTT
* *
73201573 ATCACATAAGGGAAAA
66 ATCACATAAGGGCAAT
73201589 ATCGTCATTTTATCACATAAGGG
1 ATCGTCATTTTATCACATAAGGG
73201612 TTCAAGTACG
Statistics
Matches: 318, Mismatches: 29, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 318 1.00
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (81 bp):
ATCGTCATTTTATCACATAAGGGAAATATCGTCATTTTATCACATAAGGGCAATATCATCATTTT
ATCACATAAGGGCAAT
Found at i:73206748 original size:48 final size:48
Alignment explanation
Indices: 73206635--73206847 Score: 188
Period size: 48 Copynumber: 4.5 Consensus size: 48
73206625 ATACGTGTGT
* * * *
73206635 TAGTGTAAGACATGTCTAGGACATGCAT-TGAC-C-ACAT-TACGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAC-A-AGC
*
73206681 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGC
* * * * * ** *
73206729 CAGTGTAAGACATGCCTGGGACATGTATCGGCTTTGAGA-CGA-GAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGC
* **
73206775 TAGTGTAAGACATGTCTCGGACATGCATCAACCTC-AGGATATACAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATATACAAGC
* *
73206823 TAGTGTAAGACTTATCTGGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
73206848 GAGTCAGCTT
Statistics
Matches: 133, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
45 1 0.01
46 59 0.44
47 4 0.03
48 63 0.47
49 3 0.02
50 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (48 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGC
Found at i:73206797 original size:46 final size:46
Alignment explanation
Indices: 73206635--73206803 Score: 178
Period size: 46 Copynumber: 3.6 Consensus size: 46
73206625 ATACGTGTGT
* * * * *
73206635 TAGTGTAAGACATGTCTAGGACATGCATTGACCAC-ATTACGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGAGAGC
** *
73206681 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACCAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGA-CGA-GAGC
* * * * *
73206729 CAGTGTAAGACATGCCTGGGACATGTATCGGCTTTGAGACGAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGC
*
73206775 TAGTGTAAGACATGTCTCGGACATGCATC
1 TAGTGTAAGACATGTCTGGGACATGCATC
73206804 AACCTCAGGA
Statistics
Matches: 100, Mismatches: 20, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 60 0.60
47 3 0.03
48 37 0.37
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAGAGC
Found at i:73206797 original size:94 final size:94
Alignment explanation
Indices: 73206673--73206847 Score: 262
Period size: 94 Copynumber: 1.9 Consensus size: 94
73206663 TGACCACATT
* ** *
73206673 ACGAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-GAGATATACCAGCCAGTGTAA
1 ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAG-GATATACAAGCCAGTGTAA
*
73206737 GACATGCCTGGGACATGTATCGGCTTTGAG
65 GACATACCTGGGACATGTATCGGCTTTGAG
*
73206767 ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAGGATATACAAGCTAGTGTAAG
1 ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAGGATATACAAGCCAGTGTAAG
* *
73206832 ACTTATCTGGGACATG
66 ACATACCTGGGACATG
73206848 GAGTCAGCTT
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
94 71 0.99
95 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (94 bp):
ACGAGAGCTAGTGTAAGACATGTCTCGGACATGCATCAACCTCAGGATATACAAGCCAGTGTAAG
ACATACCTGGGACATGTATCGGCTTTGAG
Found at i:73212791 original size:31 final size:31
Alignment explanation
Indices: 73212737--73212796 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
73212727 AAATGGGCTC
** *
73212737 ACACGCCCATGTGGCCTGTCCATGTGGGCCA
1 ACACGCCCATGTGGCCTACCCATGCGGGCCA
*
73212768 ACACGCCCATGTGGGCTACCCATGCGGGC
1 ACACGCCCATGTGGCCTACCCATGCGGGC
73212797 TCACATGCCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.17, C:0.37, G:0.30, T:0.17
Consensus pattern (31 bp):
ACACGCCCATGTGGCCTACCCATGCGGGCCA
Found at i:73214381 original size:19 final size:19
Alignment explanation
Indices: 73214359--73214422 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
73214349 AATTCATTTG
73214359 ATAACAGTATCTCATCCAT
1 ATAACAGTATCTCATCCAT
* *
73214378 ATAAATAGTA-CTTTATCCAT
1 AT-AACAGTATC-TCATCCAT
73214398 ATAACAGTAAT-TCATCCAT
1 ATAACAGT-ATCTCATCCAT
*
73214417 GTAACA
1 ATAACA
73214423 CATAGCTTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
19 20 0.56
20 16 0.44
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (19 bp):
ATAACAGTATCTCATCCAT
Found at i:73216580 original size:45 final size:45
Alignment explanation
Indices: 73216528--73216626 Score: 135
Period size: 45 Copynumber: 2.2 Consensus size: 45
73216518 GAATCTAATA
* * ** *
73216528 CGATGCCAATGTCTCAAACATGGTCTTACACGTAACCACATATAT
1 CGATGCCAATGTCTCAAACATGCTCCTACACAAAAACACATATAT
* *
73216573 CGATGCCAATGTCTCAGACGTGCTCCTACACAAAAACACATATAT
1 CGATGCCAATGTCTCAAACATGCTCCTACACAAAAACACATATAT
73216618 CGATGCCAA
1 CGATGCCAA
73216627 CGTCCCAGAC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.28, G:0.14, T:0.23
Consensus pattern (45 bp):
CGATGCCAATGTCTCAAACATGCTCCTACACAAAAACACATATAT
Found at i:73220938 original size:27 final size:26
Alignment explanation
Indices: 73220903--73221013 Score: 141
Period size: 27 Copynumber: 4.1 Consensus size: 26
73220893 AGCATGGCTG
* *
73220903 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
73220929 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
73220957 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
73220984 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
73221011 CCA
1 CCA
73221014 AGACGCTTCC
Statistics
Matches: 75, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:73220967 original size:54 final size:54
Alignment explanation
Indices: 73220903--73221013 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
73220893 AGCATGGCTG
*
73220903 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * *
73220957 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
73221011 CCA
1 CCA
73221014 AGACGCTTCC
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:73222459 original size:24 final size:24
Alignment explanation
Indices: 73222432--73222502 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
73222422 CTAGATTTCC
**
73222432 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
73222456 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
73222480 TCCGTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
73222503 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.03, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:73228006 original size:13 final size:13
Alignment explanation
Indices: 73227989--73228087 Score: 80
Period size: 13 Copynumber: 7.8 Consensus size: 13
73227979 GTGTAAAATA
73227989 AAATGGTTATACG
1 AAATGGTTATACG
* *
73228002 TAATGGTTATATG
1 AAATGGTTATACG
*
73228015 AAATGGTTACACG
1 AAATGGTTATACG
*
73228028 AAATGG-TA-ATG
1 AAATGGTTATACG
* *
73228039 AGATGGCTATACG
1 AAATGGTTATACG
*
73228052 AAATAGTTATAC-
1 AAATGGTTATACG
*
73228064 AAATGAG-TATATG
1 AAATG-GTTATACG
*
73228077 AAATGATTATA
1 AAATGGTTATA
73228088 TGAATCGGTT
Statistics
Matches: 67, Mismatches: 14, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
11 7 0.10
12 12 0.18
13 48 0.72
ACGTcount: A:0.41, C:0.06, G:0.21, T:0.31
Consensus pattern (13 bp):
AAATGGTTATACG
Found at i:73228044 original size:24 final size:26
Alignment explanation
Indices: 73227989--73228091 Score: 97
Period size: 25 Copynumber: 4.1 Consensus size: 26
73227979 GTGTAAAATA
*
73227989 AAATGGTTATACGTAATGGTTATATG
1 AAATGGTTATACGAAATGGTTATATG
*
73228015 AAATGGTTACACGAAATGG-TA-ATG
1 AAATGGTTATACGAAATGGTTATATG
* * * *
73228039 AGATGGCTATACGAAATAGTTATA-C
1 AAATGGTTATACGAAATGGTTATATG
* *
73228064 AAATGAG-TATATGAAATGATTATATG
1 AAATG-GTTATACGAAATGGTTATATG
73228090 AA
1 AA
73228092 TCGGTTAAAT
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
24 18 0.30
25 22 0.36
26 21 0.34
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.31
Consensus pattern (26 bp):
AAATGGTTATACGAAATGGTTATATG
Found at i:73233054 original size:47 final size:47
Alignment explanation
Indices: 73233002--73233509 Score: 694
Period size: 47 Copynumber: 10.6 Consensus size: 47
73232992 GATAATTGTG
* *
73233002 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
73233049 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73233096 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAA--TGGCCGATGTGATGA
*
73233147 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73233196 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAA--G--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73233247 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
73233294 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAA--GTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
73233343 ATGTGAAAGTGTATATATGTGATGAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
73233390 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * * *
73233437 ATGTGAAAGTGTATTTATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTATATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
* *
73233484 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTATATATATGTGATAAG
73233510 TCCCGAAGGG
Statistics
Matches: 425, Mismatches: 26, Indels: 19
0.90 0.06 0.04
Matches are distributed among these distances:
46 2 0.00
47 234 0.55
48 2 0.00
49 94 0.22
51 93 0.22
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:73233109 original size:96 final size:96
Alignment explanation
Indices: 73233002--73233509 Score: 778
Period size: 96 Copynumber: 5.3 Consensus size: 96
73232992 GATAATTGTG
*
73233002 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
73233065 ATGTGATAAGGCCGAATGGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
73233096 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGTGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAA--TGGCCGATGTGATGAATGTGAAAGTG--T
*
73233161 ATATATGTGATAAGGCCTAATGGCCAATGTGATGA
62 ATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
73233196 ATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTAT
1 ATGTGAAAGTG--TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
73233261 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATATGTGATAAGGCCTAATGGCCGATGTGATGA
73233294 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
73233359 ATGTGATGAGGCCTAATAGCCGATGTGATGA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
73233390 ATGTGAAAGTG--TATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATTT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* * * * * *
73233453 ATGTGA-CAGAGCCGAGTGGCCAACGTGATGG
66 ATGTGATAAG-GCCTAATGGCCGATGTGATGA
73233484 ATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
73233510 TCCCGAAGGG
Statistics
Matches: 385, Mismatches: 18, Indels: 22
0.91 0.04 0.05
Matches are distributed among these distances:
93 2 0.01
94 96 0.25
95 3 0.01
96 120 0.31
98 71 0.18
100 70 0.18
102 23 0.06
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (96 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:73233262 original size:147 final size:142
Alignment explanation
Indices: 73233002--73233509 Score: 747
Period size: 147 Copynumber: 3.5 Consensus size: 142
73232992 GATAATTGTG
**
73233002 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGGTGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
73233065 ATGTGATAAGGCCGAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG---ATATATGTGATAAGGCCTAA
73233130 TGTGGCCGATGTGATGA
128 --TGGCCGATGTGATGA
73233147 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTG----T
*
73233212 ATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
62 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCCT
73233277 AATGGCCGATGTGATGA
126 AATGGCCGATGTGATGA
*
73233294 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
* * *
73233359 ATGTGATGAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATGAGGCCTAATG
66 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATGTGATAAGGCCTAATG
73233424 GCCGATGTGATGA
130 GCCGATGTGATGA
* * * * *
73233437 ATGTGAAAGTGTAT-T-TATGTGA-CAGAGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 ATGTGAAAGTGTATATATATGTGATAAG-GCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
73233499 AATGTGATAAG
65 TATGTGATAAG
73233510 TCCCGAAGGG
Statistics
Matches: 339, Mismatches: 17, Indels: 18
0.91 0.05 0.05
Matches are distributed among these distances:
140 2 0.01
141 47 0.14
142 1 0.00
143 93 0.27
145 5 0.01
146 2 0.01
147 123 0.36
149 21 0.06
151 45 0.13
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATGTGATAAGGCCTAATGG
CCGATGTGATGA
Found at i:73239153 original size:55 final size:54
Alignment explanation
Indices: 73239066--73239321 Score: 269
Period size: 55 Copynumber: 4.8 Consensus size: 54
73239056 ATTAGGGTTT
*
73239066 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * * *
73239121 GAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
73239176 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
73239229 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTT-TAA--A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
73239279 AAGGATACCATGTAAGACCATGGCAAGTCATGACAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
73239322 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 24, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
50 40 0.24
52 8 0.05
53 41 0.24
54 11 0.06
55 67 0.39
56 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:73239272 original size:108 final size:110
Alignment explanation
Indices: 73239073--73239323 Score: 324
Period size: 108 Copynumber: 2.4 Consensus size: 110
73239063 TTTAAGGATA
* *
73239073 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCGAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
73239138 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* *
73239183 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
73239245 ACCATGTCAAGACATGGCAATGGTAAGTT--T-TAA---AAAGGATA
65 ACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGG-TC
* * *
73239286 CCATGTAAGACCATGGCAAGTCATGACAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
73239324 ACCCGCGTAT
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
102 5 0.04
103 30 0.24
104 2 0.02
105 3 0.02
106 1 0.01
107 3 0.02
108 47 0.38
109 7 0.06
110 27 0.22
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:73242742 original size:40 final size:40
Alignment explanation
Indices: 73242683--73242863 Score: 202
Period size: 40 Copynumber: 4.5 Consensus size: 40
73242673 TCGGATGATG
73242683 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * *
73242723 TCCAGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTACA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATA
* ** * * *
73242766 CCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* ** *
73242806 TCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
*
73242846 TCC-GGCTAAATCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
73242864 ACACTTGGGT
Statistics
Matches: 115, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
39 13 0.11
40 68 0.59
41 1 0.01
43 33 0.29
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:73242823 original size:83 final size:83
Alignment explanation
Indices: 73242684--73242838 Score: 238
Period size: 83 Copynumber: 1.9 Consensus size: 83
73242674 CGGATGATGT
** * * *
73242684 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCAGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACCATATCCAGGCTAAGACCCGAAGGCATTTG
73242749 TGCGAGTAGTTGCTACAC
66 TGCGAGTAGTTGCTACAC
* *
73242767 CCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACCATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACCATATCCAGGCTAAGACCCGAAGGCATTTG
*
73242832 TGTGAGT
66 TGCGAGT
73242839 TGCTATATCC
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 64 1.00
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.24
Consensus pattern (83 bp):
CCGGGCTAAGTCCCGAAGGCATTCATGCAAGTGACCATATCCAGGCTAAGACCCGAAGGCATTTG
TGCGAGTAGTTGCTACAC
Found at i:73250935 original size:40 final size:40
Alignment explanation
Indices: 73250880--73251100 Score: 291
Period size: 40 Copynumber: 5.5 Consensus size: 40
73250870 TCGGATGATG
73250880 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* *
73250920 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATA
* * *
73250963 CCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
** * *
73251003 TCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
* * *
73251043 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
*
73251083 TCC-GGCTAAATCCCGAAG
1 TCCGGGCTAAGTCCCGAAG
73251101 ACACTTGGGT
Statistics
Matches: 160, Mismatches: 18, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 13 0.08
40 110 0.69
41 1 0.01
43 36 0.22
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATA
Found at i:73251020 original size:83 final size:80
Alignment explanation
Indices: 73250881--73251100 Score: 293
Period size: 83 Copynumber: 2.7 Consensus size: 80
73250871 CGGATGATGT
* * **
73250881 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGATAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
73250946 TGCGAGTAGTTG-CTATAC
66 TGC---TAG-TGACTATAC
*
73250964 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
*
73251029 TGCTAGTGACTATAT
66 TGCTAGTGACTATAC
* * *
73251044 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TGACTATATCCGGGCTAAGTCCCGAAG
73251101 ACACTTGGGT
Statistics
Matches: 126, Mismatches: 9, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
79 16 0.13
80 45 0.36
81 2 0.02
83 63 0.50
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGTCCCGAAGGCATTCA
TGCTAGTGACTATAC
Found at i:73258465 original size:108 final size:110
Alignment explanation
Indices: 73258266--73258516 Score: 315
Period size: 108 Copynumber: 2.4 Consensus size: 110
73258256 TTTAAGGATA
* * *
73258266 CCATGTAAGACCATTCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAGGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
73258331 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
* *
73258376 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
73258438 ACCATGTCAAGACATGGCAATGGTAAGTT--T-T-A--AAAAGGATA
65 ACCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGG-TC
* * *
73258479 CCATGTAAGACCATGGCAAGTCATGACAA-TGGTAAGGT
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
73258517 ACCCGCGTAT
Statistics
Matches: 124, Mismatches: 12, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
102 6 0.05
103 30 0.24
104 3 0.02
105 1 0.01
106 1 0.01
107 3 0.02
108 47 0.38
109 7 0.06
110 26 0.21
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAGGTC
Found at i:73258493 original size:50 final size:53
Alignment explanation
Indices: 73258259--73258514 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 53
73258249 ATTAGGGTTT
* * *
73258259 AAGGATACCATGTAAGACCAT-TCCAAGGCATGGCAATTGGTAAGGTTTCTA-AGGC
1 AAGGATACCATGTAAGACCATGT-CAAGACATGGCAA-TGGTAA-G-TTCTATAAGA
* * * * *
73258314 AGGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-CTATAA-G-A
* * * * * *
73258370 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAA-GA
73258422 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT-T-TAA-A
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGA
* * *
73258472 AAGGATACCATGTAAGACCATGGCAAGTCATGACAATGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAG
73258515 GTACCCGCGT
Statistics
Matches: 168, Mismatches: 26, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
50 40 0.24
52 9 0.05
53 45 0.27
54 7 0.04
55 63 0.38
56 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGA
Found at i:73260608 original size:11 final size:11
Alignment explanation
Indices: 73260592--73260646 Score: 56
Period size: 11 Copynumber: 4.6 Consensus size: 11
73260582 CATTTTACAT
73260592 TATTATTTTTA
1 TATTATTTTTA
*
73260603 TATTATTATTA
1 TATTATTTTTA
73260614 TATTATATATTTA
1 TATTAT-T-TTTA
*
73260627 TTAATTATTTATA
1 -T-ATTATTTTTA
73260640 TATTATT
1 TATTATT
73260647 CTTACATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 22 0.59
12 2 0.05
13 6 0.16
14 2 0.05
15 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:73260687 original size:19 final size:20
Alignment explanation
Indices: 73260601--73260687 Score: 58
Period size: 19 Copynumber: 4.4 Consensus size: 20
73260591 TTATTATTTT
*
73260601 TATATTATTATTATATTATA
1 TATATTATTATTATAATATA
73260621 TAT-TTATTAATTAT--T-TA
1 TATATTATT-ATTATAATATA
* *
73260638 TATATTATTCTTA-CATATA
1 TATATTATTATTATAATATA
* *
73260657 TATTTTCGTTATTTTATAATATA
1 TATATT-ATTA--TTATAATATA
73260680 TATATTAT
1 TATATTAT
73260688 ATTTCTTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 16
0.69 0.09 0.22
Matches are distributed among these distances:
17 8 0.16
18 7 0.14
19 12 0.24
20 10 0.20
22 4 0.08
23 10 0.20
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.60
Consensus pattern (20 bp):
TATATTATTATTATAATATA
Found at i:73260911 original size:31 final size:32
Alignment explanation
Indices: 73260868--73260928 Score: 81
Period size: 31 Copynumber: 1.9 Consensus size: 32
73260858 AATTATTAAT
73260868 TATTTATTTATTATGTATTATGTTA-AAATGA
1 TATTTATTTATTATGTATTATGTTATAAATGA
* *
73260899 TATTT-TTATATTATGTTTTATTTTATAAAT
1 TATTTATT-TATTATGTATTATGTTATAAAT
73260929 TCTTTTACAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 2 0.08
31 20 0.77
32 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.61
Consensus pattern (32 bp):
TATTTATTTATTATGTATTATGTTATAAATGA
Found at i:73261283 original size:35 final size:36
Alignment explanation
Indices: 73261211--73261290 Score: 126
Period size: 36 Copynumber: 2.2 Consensus size: 36
73261201 ATTGATATTG
* * *
73261211 TATTACTCTTTTTTGTATGTCATGCATTATTTAAAT
1 TATTACTTTTTTTTGTATATAATGCATTATTTAAAT
73261247 TATTACTTTTTTTTGTATATAATGCATTATTT-AAT
1 TATTACTTTTTTTTGTATATAATGCATTATTTAAAT
73261282 TATTACTTT
1 TATTACTTT
73261291 GTATGTTTGT
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 12 0.29
36 29 0.71
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (36 bp):
TATTACTTTTTTTTGTATATAATGCATTATTTAAAT
Found at i:73267227 original size:44 final size:44
Alignment explanation
Indices: 73267140--73267232 Score: 114
Period size: 44 Copynumber: 2.1 Consensus size: 44
73267130 GGAACAAGTT
* * *
73267140 GAAGATAGCAGATTCGGCATCTCTGTATTGTCAGAAAGCAGATC
1 GAAGATACCAGATTCGGCAACTCTGTATTGGCAGAAAGCAGATC
* * * * *
73267184 TAAGATACCAGATTTGGCAACTCTGTATTGGCGGAGAGTAGATC
1 GAAGATACCAGATTCGGCAACTCTGTATTGGCAGAAAGCAGATC
73267228 GAAGA
1 GAAGA
73267233 CATAGTTGAT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (44 bp):
GAAGATACCAGATTCGGCAACTCTGTATTGGCAGAAAGCAGATC
Found at i:73267763 original size:205 final size:205
Alignment explanation
Indices: 73267225--73268127 Score: 1461
Period size: 205 Copynumber: 4.4 Consensus size: 205
73267215 CGGAGAGTAG
* * *
73267225 ATCGAAGACATAGTTGATTTGGCTTTCACGTGTTTACGATAAAGCAAATCGAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
* *
73267290 TCTCTGTATTGTCAGAGAACAAATTGAAGTCTAGCATCTCCACTTCAATGGAGGGCAGATACACA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAGAGCAGATACACA
73267355 GCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTA
131 GCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTA
73267420 CAAGGAACAA
196 CAAGGAACAA
73267430 ATCG-AGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
*
73267494 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAGGGCAGATACACA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAGAGCAGATACACA
73267559 GCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTA
131 GCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTA
73267624 CAAGGAACAA
196 CAAGGAACAA
73267634 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
* * *
73267699 TCTCTGTATTGTCGGAGAACAAATCGAAGTCTGGAATCTCCACTTCAATGGAGAGCAGATACACA
66 TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAGAGCAGATACACA
* * *
73267764 GCAGATCTCACCTTCAAATGTTTATGCTAAAGCAGATCCAAGATGGTTTGGTACCCTTGTGCTTA
131 GCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTA
73267829 CAAGGAACAA
196 CAAGGAACAA
* * *
73267839 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTATGATGAAGCAACTCTAAGATGATTTGGCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
** * * * * *
73267904 TCTCTGTATTAG-CAGAGAGTAAATCGAAGTCTGGCATCTCCACTTCAATAGAGAGCAAACACAT
66 TCTCTGTATT-GTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAGAGCAGATACAC
* * * *
73267968 AGCAGAT-TCAAACTTCAGATGTTTATACTGAAGTAGATCCAAGATGGTTTGGCATCCTTGTGCT
130 AGCAGATCTC-ACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCT
* *
73268032 TACAAGGAGCGA
194 TACAAGGAACAA
* * * ***
73268044 ATCGAAGACATAGCCGATTTGGCTTTCACATGCTTACGATGAAGCAAATCTAAGATGATGAATCA
1 ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
73268109 TCTCTGTATTGTCAGAGAA
66 TCTCTGTATTGTCAGAGAA
73268128 TGAATTGAAG
Statistics
Matches: 653, Mismatches: 41, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
204 203 0.31
205 449 0.69
206 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
ATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCA
TCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAGAGCAGATACACA
GCAGATCTCACCTTCAGATGTTTATGCTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGCTTA
CAAGGAACAA
Found at i:73269784 original size:3 final size:3
Alignment explanation
Indices: 73269772--73269882 Score: 61
Period size: 3 Copynumber: 35.7 Consensus size: 3
73269762 TAATATGATT
* **
73269772 TTA TTA -TA TTA TTA TTTA TTA TATA TTA TTT TTCA CAAA TTA TTA TTA
1 TTA TTA TTA TTA TTA -TTA TTA T-TA TTA TTA TT-A -TTA TTA TTA TTA
* *
73269820 TT- TTA -CA TTA TTA TTT TTA -TA TTA TTA TTA -TA TTA TATA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA
73269863 TTAA TTA TTTA TATA TTA TT
1 TT-A TTA -TTA T-TA TTA TT
73269883 CTTACATATA
Statistics
Matches: 84, Mismatches: 10, Indels: 28
0.69 0.08 0.23
Matches are distributed among these distances:
2 9 0.11
3 54 0.64
4 20 0.24
5 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:73269844 original size:11 final size:11
Alignment explanation
Indices: 73269828--73269882 Score: 56
Period size: 11 Copynumber: 4.6 Consensus size: 11
73269818 TATTTTACAT
73269828 TATTATTTTTA
1 TATTATTTTTA
*
73269839 TATTATTATTA
1 TATTATTTTTA
73269850 TATTATATATTTA
1 TATTAT-T-TTTA
*
73269863 TTAATTATTTATA
1 -T-ATTATTTTTA
73269876 TATTATT
1 TATTATT
73269883 CTTACATATA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
11 22 0.59
12 2 0.05
13 6 0.16
14 2 0.05
15 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTATTTTTA
Found at i:73270498 original size:35 final size:35
Alignment explanation
Indices: 73270451--73270524 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
73270441 ATTGATATTG
*
73270451 TATTACTCTTTTTTGTATGTCATGCATTATTTAAAT
1 TATTACTCTTTTTTGTATATCATGCATTATTT-AAT
*
73270487 TATTAC-CTTTTTTTTATATCATGCATTATTTAAT
1 TATTACTCTTTTTTGTATATCATGCATTATTTAAT
73270521 TATT
1 TATT
73270525 GCTTTGTATG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
34 7 0.19
35 23 0.64
36 6 0.17
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (35 bp):
TATTACTCTTTTTTGTATATCATGCATTATTTAAT
Found at i:73285411 original size:38 final size:38
Alignment explanation
Indices: 73285369--73285659 Score: 163
Period size: 38 Copynumber: 6.9 Consensus size: 38
73285359 CTTCAAATTA
* *
73285369 ACATGTATAATCGTGGCATATCCACTTAGCACCATGTT
1 ACATGTATAATCGTGGTATATCCACTTAGCACCACGTT
* * * *
73285407 ACATGTTTAACCATGGTATATCCACTTAGCATCACGTT
1 ACATGTATAATCGTGGTATATCCACTTAGCACCACGTT
* * *
73285445 A-ATGAATCAATATATGTAACCGTGGCATATCCACTTAACACCATGTT
1 ACATG--T--ATA-A--T---CGTGGTATATCCACTTAGCACCACGTT
* * *
73285492 ACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 ACATGTATAATCGTGGTATATCCACTTAGCACCACGTT
*
73285530 A-ATGAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 ACATG--T--ATA-A--T---CGTGGTATATCCACTTAGCACCACGTT
73285577 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTAGCACCACGTT
1 ACATG------TA----TAATCGTGGTATATCCACTTAGCACCACGTT
* *
73285625 ACACGTATAACCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAATCGTGGTATATCCACTTAGCACCAC
73285660 ATTTTTTCAT
Statistics
Matches: 197, Mismatches: 26, Indels: 60
0.70 0.09 0.21
Matches are distributed among these distances:
37 6 0.03
38 84 0.43
39 2 0.01
41 4 0.02
42 4 0.02
43 1 0.01
44 2 0.01
46 1 0.01
47 49 0.25
48 36 0.18
50 1 0.01
51 1 0.01
52 3 0.02
53 1 0.01
54 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAATCGTGGTATATCCACTTAGCACCACGTT
Found at i:73285473 original size:85 final size:85
Alignment explanation
Indices: 73285380--73285582 Score: 379
Period size: 85 Copynumber: 2.4 Consensus size: 85
73285370 CATGTATAAT
*
73285380 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCATCACGTT
1 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
73285445 AATGAATCAATATATGTAAC
66 AATGAATCAATATATGTAAC
*
73285465 CGTGGCATATCCACTTAACACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
1 CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
73285530 AATGAATCAATATATGTAAC
66 AATGAATCAATATATGTAAC
*
73285550 CGTGGCATATCCACTTAGCACCACGTTACATGT
1 CGTGGCATATCCACTTAGCACCATGTTACATGT
73285583 ATCAATATGT
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 114 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (85 bp):
CGTGGCATATCCACTTAGCACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTT
AATGAATCAATATATGTAAC
Found at i:73285608 original size:48 final size:48
Alignment explanation
Indices: 73285499--73285632 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
73285489 GTTACATGTT
* *
73285499 TAACCATGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
73285546 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* *
73285594 TAATCGTGGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
73285633 AACCGTGGTA
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
47 30 0.38
48 49 0.62
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:73285620 original size:133 final size:132
Alignment explanation
Indices: 73285414--73285659 Score: 375
Period size: 133 Copynumber: 1.9 Consensus size: 132
73285404 GTTACATGTT
* *
73285414 TAACCATGGTATATCCACTTAGCATCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
1 TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
* * *
73285479 TTAACACCATGTTACATGTTTAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
66 TTAACACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
73285544 TG
131 TG
* * * * *
73285546 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCGTGGTATATCCA
1 TAACCATGGCATATCCACTTAGCACCACGTTA-ATGAATCAATATATGTAACCGTGGCATATCCA
* *
73285611 CTTAGCACCACGTTACACGTATAACCGTGGTATATCCACTTAGCACCAC
65 CTTAACACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCAC
73285660 ATTTTTTCAT
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
132 29 0.29
133 72 0.71
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.30
Consensus pattern (132 bp):
TAACCATGGCATATCCACTTAGCACCACGTTAATGAATCAATATATGTAACCGTGGCATATCCAC
TTAACACCACGTTACACGTATAACCATGGTATATCCACTTAGCACCACGTTAATGAATCAATATA
TG
Found at i:73286758 original size:50 final size:50
Alignment explanation
Indices: 73286653--73286885 Score: 263
Period size: 49 Copynumber: 4.7 Consensus size: 50
73286643 CTGGTACGCA
* * * * **
73286653 TAGTAGCCAGCAGTTAGTAATACACATGCAACC-AATTATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGATACACG
* ** *
73286702 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGATACACG
* * * * * *
73286752 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-TTATCTGATACACG
* * * *
73286803 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGATACACG
73286852 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
73286886 CACAATAGAT
Statistics
Matches: 153, Mismatches: 28, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 68 0.44
50 48 0.31
51 37 0.24
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAATTATCTGATACACG
Found at i:73286875 original size:100 final size:101
Alignment explanation
Indices: 73286702--73286882 Score: 283
Period size: 100 Copynumber: 1.8 Consensus size: 101
73286692 CTGATACACG
* * *
73286702 TAGTAGCCTGTACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCAATACACGTAGTAGCCTGCACTT
73286767 AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
66 AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
* ** **
73286803 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCAATACACGTAGTAGCCTGCACTT
73286867 AGTACTACACACGTGA
66 AGTACTACACACGTGA
73286883 CCTCACAATA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
100 42 0.58
101 30 0.42
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCCAATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTATCGGGTACGCA
Found at i:73290947 original size:42 final size:41
Alignment explanation
Indices: 73290901--73291024 Score: 104
Period size: 42 Copynumber: 3.0 Consensus size: 41
73290891 CTTACATGGG
* *
73290901 ATCTCACATCGATGCCATATCCCAGATATGGTATTATACGAA
1 ATCTCA-ATCGATGCCATATCCCAAATATGGTCTTATACGAA
* ** * ** *
73290943 ATCTCATTCCGATGGGATGTCCCAAACGTGGTCTTACACGAA
1 ATCTCAAT-CGATGCCATATCCCAAATATGGTCTTATACGAA
* ** *
73290985 ATCTCATATCAACACCATATCCCATATATGGTCTTATACG
1 ATCTCA-ATCGATGCCATATCCCAAATATGGTCTTATACG
73291025 GGATCTCATC
Statistics
Matches: 60, Mismatches: 20, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
41 1 0.02
42 58 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (41 bp):
ATCTCAATCGATGCCATATCCCAAATATGGTCTTATACGAA
Found at i:73292779 original size:30 final size:30
Alignment explanation
Indices: 73292713--73292803 Score: 92
Period size: 30 Copynumber: 2.9 Consensus size: 30
73292703 GTTAAAATTA
*
73292713 TTGATATAACTCTGATTGAATTGCATGGAATTTT
1 TTGAAATAA-TCTGATTGAATTGCAT-G--TTTT
* *
73292747 TTGAAATAATTTGATTAAATTGCATGTTTT
1 TTGAAATAATCTGATTGAATTGCATGTTTT
* * *
73292777 TTGGAATGATCTGGTTGAATTGCATGT
1 TTGAAATAATCTGATTGAATTGCATGT
73292804 GAGATAGGAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 26 0.53
32 1 0.02
33 14 0.29
34 8 0.16
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.45
Consensus pattern (30 bp):
TTGAAATAATCTGATTGAATTGCATGTTTT
Found at i:73296935 original size:16 final size:15
Alignment explanation
Indices: 73296914--73296947 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
73296904 CTTCATTTTT
73296914 CATCTCTCACTTCACA
1 CATCTCTCAC-TCACA
*
73296930 CATCTCTCTCTCACA
1 CATCTCTCACTCACA
73296945 CAT
1 CAT
73296948 ATTTTCTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.24, C:0.44, G:0.00, T:0.32
Consensus pattern (15 bp):
CATCTCTCACTCACA
Done.