Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 23 of 295
Found at i:6914249 original size:26 final size:26
Alignment explanation
Indices: 6914218--6914273 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6914208 TGAAATGCCC
6914218 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
6914244 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
6914270 ATCA
1 ATCA
6914274 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:6915638 original size:40 final size:40
Alignment explanation
Indices: 6915594--6915740 Score: 258
Period size: 40 Copynumber: 3.7 Consensus size: 40
6915584 CCAACCCAAT
* * *
6915594 TGCCTTCGAGATTTAGCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
6915634 TGCCTTCGGGACTTATCCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
6915674 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
6915714 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
6915741 TCCTCAATTG
Statistics
Matches: 103, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 103 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:6921668 original size:25 final size:25
Alignment explanation
Indices: 6921639--6921689 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
6921629 AAGATAATTT
6921639 CATTATAGGTTAAAGTGAATGGAAG
1 CATTATAGGTTAAAGTGAATGGAAG
6921664 CATTATAGGTTAAAGTGAATGGAAG
1 CATTATAGGTTAAAGTGAATGGAAG
6921689 C
1 C
6921690 TGTGCACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.39, C:0.06, G:0.27, T:0.27
Consensus pattern (25 bp):
CATTATAGGTTAAAGTGAATGGAAG
Found at i:6924227 original size:26 final size:26
Alignment explanation
Indices: 6924196--6924251 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
6924186 TGAAATGCCC
6924196 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAAACCATT
* *
6924222 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATT
6924248 ATCA
1 ATCA
6924252 ATTTGTACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.39, C:0.25, G:0.05, T:0.30
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAAACCATT
Found at i:6934778 original size:32 final size:32
Alignment explanation
Indices: 6934737--6934801 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
6934727 CACATTCAAG
6934737 TATGAATAATTCATGAGCCTTGGTTTTATGCT
1 TATGAATAATTCATGAGCCTTGGTTTTATGCT
6934769 TATGAATAATTCATGAGCCTTGGTTTTATGCT
1 TATGAATAATTCATGAGCCTTGGTTTTATGCT
6934801 T
1 T
6934802 TCAATCTCAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.12, G:0.18, T:0.45
Consensus pattern (32 bp):
TATGAATAATTCATGAGCCTTGGTTTTATGCT
Found at i:6934878 original size:13 final size:14
Alignment explanation
Indices: 6934857--6934894 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
6934847 TCACTTTCTC
6934857 ATTTCATTTAAT-A
1 ATTTCATTTAATCA
*
6934870 ATTTAATTT-ATCA
1 ATTTCATTTAATCA
6934883 ATTTCATTTAAT
1 ATTTCATTTAAT
6934895 TTTTTCTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 2 0.10
13 17 0.81
14 2 0.10
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTCATTTAATCA
Found at i:6935900 original size:23 final size:22
Alignment explanation
Indices: 6935857--6935914 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
6935847 AAAAGGTATC
* *
6935857 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
6935878 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
6935901 TGCATATCATATCT
1 TACAAATCATATCT
6935915 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:6935917 original size:19 final size:19
Alignment explanation
Indices: 6935893--6935929 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
6935883 AATCATATCT
6935893 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6935912 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
6935930 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6935937 original size:17 final size:19
Alignment explanation
Indices: 6935896--6935937 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
6935886 CATATCTTCT
*
6935896 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
6935915 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
6935932 AAGATT
1 AAGATT
6935938 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:6936333 original size:45 final size:45
Alignment explanation
Indices: 6936278--6936475 Score: 254
Period size: 45 Copynumber: 4.4 Consensus size: 45
6936268 GGAAGGCGAT
* *
6936278 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* *
6936323 ATCTGTTATCTTCGATCTGCTCACCGTCAAATACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
6936368 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * * * *
6936412 ATCTGTTATCTCCGATTTGCTCTCCGTCTGATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
* * *
6936457 ATTTGTCATCTTGGATCTG
1 ATCTGTTATCTTCGATCTG
6936476 TTTCGATGTA
Statistics
Matches: 132, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
44 39 0.30
45 93 0.70
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.31
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAA
Found at i:6936399 original size:89 final size:90
Alignment explanation
Indices: 6936278--6936458 Score: 274
Period size: 89 Copynumber: 2.0 Consensus size: 90
6936268 GGAAGGCGAT
** *
6936278 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
6936343 TCACCGTCAAATACAGAGACGCCAA
66 TCACCGTCAAATACAGAGACGCCAA
* *
6936368 ATCTGCT-TCTTCAATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGC
1 ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
* ** *
6936432 TCTCCGTCTGATACAGAGATGCCAA
66 TCACCGTCAAATACAGAGACGCCAA
6936457 AT
1 AT
6936459 TTGTCATCTT
Statistics
Matches: 82, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
89 75 0.91
90 7 0.09
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.30
Consensus pattern (90 bp):
ATCTGCTATCTTCAATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTCCGATCTGC
TCACCGTCAAATACAGAGACGCCAA
Found at i:6936598 original size:78 final size:78
Alignment explanation
Indices: 6936501--6936769 Score: 405
Period size: 78 Copynumber: 3.4 Consensus size: 78
6936491 ATGAAGGTCA
*
6936501 GATCTGCTCCCCGTCTAATACAGAGATACCAAATCATCTTGGATCTGCTTTAATGAAGGTCCA-A
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGGT-CAGA
* *
6936565 TCTGTTATGTCTTT
65 TCTGCTATGTCTTC
* * * * *
6936579 GATCTACTTCCCGTCTAATACAGAGATGTCAAATCATCTTGGATTTGCTTCAATGAAGGTCAGAT
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGGTCAGAT
*
6936644 CTGCTGTGTCTTC
66 CTGCTATGTCTTC
*
6936657 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATAAAGGTCAGAT
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGGTCAGAT
*
6936722 TTGCTATGTCTTC
66 CTGCTATGTCTTC
* *
6936735 GATCTGCTCTCCGTCTAATATAGAGATGCCAAATC
1 GATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
6936770 TGTTTCTTCG
Statistics
Matches: 171, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
77 2 0.01
78 169 0.99
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (78 bp):
GATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTTAATGAAGGTCAGAT
CTGCTATGTCTTC
Found at i:6947033 original size:18 final size:18
Alignment explanation
Indices: 6947010--6947044 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6947000 GATATGATAC
6947010 TAAAAT-TATTAAAAAAAT
1 TAAAATATA-TAAAAAAAT
6947028 TAAAATATATAAAAAAA
1 TAAAATATATAAAAAAA
6947045 GGGAAACATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:6947368 original size:18 final size:19
Alignment explanation
Indices: 6947332--6947378 Score: 87
Period size: 18 Copynumber: 2.5 Consensus size: 19
6947322 AATCATATCT
6947332 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
6947351 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
6947369 TCTAAGATTG
1 TCTAAGATTG
6947379 TATCATTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:6947976 original size:45 final size:46
Alignment explanation
Indices: 6947920--6948014 Score: 183
Period size: 45 Copynumber: 2.1 Consensus size: 46
6947910 TTACTTAATT
6947920 TATAAGTAAATATATATATTATATACATTTGTACTAATAATTT-AA
1 TATAAGTAAATATATATATTATATACATTTGTACTAATAATTTAAA
6947965 TATAAGTAAATATATATATTATATACATTTGTACTAATAATTTAAA
1 TATAAGTAAATATATATATTATATACATTTGTACTAATAATTTAAA
6948011 TATA
1 TATA
6948015 CATGTATTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
45 43 0.88
46 6 0.12
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.44
Consensus pattern (46 bp):
TATAAGTAAATATATATATTATATACATTTGTACTAATAATTTAAA
Found at i:6948181 original size:20 final size:22
Alignment explanation
Indices: 6948135--6948181 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
6948125 TCATTTCTTA
*
6948135 CTAATTACTTCTAATTAAAAAT
1 CTAATTACTCCTAATTAAAAAT
*
6948157 -AAATT-CTCCTAATT-AAAAT
1 CTAATTACTCCTAATTAAAAAT
6948176 CTAATT
1 CTAATT
6948182 TAACTCACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
19 5 0.24
20 12 0.57
21 4 0.19
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (22 bp):
CTAATTACTCCTAATTAAAAAT
Found at i:6955128 original size:26 final size:26
Alignment explanation
Indices: 6955099--6955151 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
6955089 CAAACTTGAA
* *
6955099 TTTCTCCTTTTTCT-TTTCTTTTCTTC
1 TTTCT-CTCTTTCTATTTCGTTTCTTC
6955125 TTTCTCTCTTTCTATTTCGTTTCTTC
1 TTTCTCTCTTTCTATTTCGTTTCTTC
6955151 T
1 T
6955152 CTGTAACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.02, C:0.26, G:0.02, T:0.70
Consensus pattern (26 bp):
TTTCTCTCTTTCTATTTCGTTTCTTC
Found at i:6956586 original size:20 final size:20
Alignment explanation
Indices: 6956561--6956602 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
6956551 TACAACACAA
*
6956561 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
**
6956581 TTCAATTTTTTATTCAATAT
1 TTCAATTTCATATTCAATAT
6956601 TT
1 TT
6956603 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.02, T:0.57
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:6957033 original size:20 final size:21
Alignment explanation
Indices: 6957010--6957056 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
6957000 CTATGAGTTC
6957010 TTCTTTCTTTCTATTTC-TTT
1 TTCTTTCTTTCTATTTCGTTT
*
6957030 TTCTTTCTTTCTGTTTCGTTT
1 TTCTTTCTTTCTATTTCGTTT
*
6957051 TGCTTT
1 TTCTTT
6957057 TGTCTCTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.02, C:0.19, G:0.06, T:0.72
Consensus pattern (21 bp):
TTCTTTCTTTCTATTTCGTTT
Found at i:6957171 original size:26 final size:25
Alignment explanation
Indices: 6957121--6957177 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 25
6957111 TAAGTAAAAC
6957121 ATATTATTATATATATTAACTTTAA
1 ATATTATTATATATATTAACTTTAA
6957146 ATTATTATTATA-ATATATATAC-TTAA
1 A-TATTATTATATATAT-TA-ACTTTAA
6957172 ATATTA
1 ATATTA
6957178 AGTAAACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
25 10 0.34
26 17 0.59
27 2 0.07
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (25 bp):
ATATTATTATATATATTAACTTTAA
Found at i:6958920 original size:6 final size:6
Alignment explanation
Indices: 6958911--6958944 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
6958901 TCATCTTCAG
6958911 CATCAC CATCAC CATCAC CATCAC CATCAC CATC
1 CATCAC CATCAC CATCAC CATCAC CATCAC CATC
6958945 TTCATCTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.50, G:0.00, T:0.18
Consensus pattern (6 bp):
CATCAC
Found at i:6961434 original size:118 final size:118
Alignment explanation
Indices: 6961226--6961462 Score: 456
Period size: 118 Copynumber: 2.0 Consensus size: 118
6961216 GATGCTCAGT
6961226 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
1 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
*
6961291 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTAGTTCTTTATCGCA
66 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
6961344 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
1 TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
*
6961409 GCCGATTATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
66 GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
6961462 T
1 T
6961463 TTTCCTTCTT
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (118 bp):
TGAGAGGTTACTGAGATTGGAAACATAACAATTACTTTAGCTTGTTTGAAAGTCCAGTTGTGAAA
GCCGATAATTCTTGAACCCAGTACTGTACAGAATATCCTACTTCTTTATCGCA
Found at i:6963540 original size:36 final size:36
Alignment explanation
Indices: 6963486--6963580 Score: 172
Period size: 36 Copynumber: 2.6 Consensus size: 36
6963476 TCAGTCATTC
* *
6963486 TACACTACTAACAGGCAATTCCTGCAATGCCCCTTG
1 TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
6963522 TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
1 TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
6963558 TACACTACTAGCATGCAATTCCT
1 TACACTACTAGCATGCAATTCCT
6963581 ACTATCTAGG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.27, C:0.33, G:0.13, T:0.27
Consensus pattern (36 bp):
TACACTACTAGCATGCAATTCCTGCAATGCCCCTTG
Found at i:6963972 original size:16 final size:16
Alignment explanation
Indices: 6963951--6963990 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
6963941 CCCATAACAC
6963951 ACATATCTATATACTA
1 ACATATCTATATACTA
6963967 ACATATCTATATACTA
1 ACATATCTATATACTA
*
6963983 ACCTATCT
1 ACATATCT
6963991 GTTTATATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.38
Consensus pattern (16 bp):
ACATATCTATATACTA
Found at i:6967702 original size:37 final size:37
Alignment explanation
Indices: 6967641--6967823 Score: 307
Period size: 37 Copynumber: 5.0 Consensus size: 37
6967631 TACGTATGAT
* *
6967641 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
6967676 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6967713 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6967750 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
6967787 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6967824 TAAAGCTATC
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.06
36 3 0.02
37 128 0.91
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:6967866 original size:52 final size:52
Alignment explanation
Indices: 6967787--6968153 Score: 443
Period size: 52 Copynumber: 7.2 Consensus size: 52
6967777 TAAGTGTAGC
* * **
6967787 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6967840 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6967892 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
6967938 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6967990 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
6968036 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *** *
6968088 CACTTTCCACTTGTCACTTGATCAGATAAATGTAGTTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6968140 CACTTTGTCACTTG
1 CACTTT-TCACTTG
6968154 ATCAGAAGTA
Statistics
Matches: 274, Mismatches: 27, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
46 83 0.30
49 1 0.00
52 174 0.64
53 16 0.06
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:6967928 original size:98 final size:98
Alignment explanation
Indices: 6967787--6968145 Score: 493
Period size: 98 Copynumber: 3.6 Consensus size: 98
6967777 TAAGTGTAGC
* * * * *
6967787 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
6967852 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6967885 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
** *
6967950 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6967983 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
*
6968048 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * * ** *
6968081 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAATGTAGTTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
6968146 GTCACTTGAT
Statistics
Matches: 233, Mismatches: 22, Indels: 6
0.89 0.08 0.02
Matches are distributed among these distances:
98 191 0.82
100 1 0.00
104 41 0.18
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:6968154 original size:150 final size:144
Alignment explanation
Indices: 6967794--6968159 Score: 561
Period size: 150 Copynumber: 2.5 Consensus size: 144
6967784 AGCCACTTAT
* *
6967794 CACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGTCACTT
1 CACT-TGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTGTCACTT
*
6967859 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
59 GATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
6967924 AAGCTATTACTTATCACTTTC
124 AAGCTATTACTTATCACTTTC
6967945 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
*
6968010 TAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGA
66 TAAGTATAGCCGAAGCTATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGA
6968075 AGCTATTACTTATCACTTTC
125 AGCTATTACTTATCACTTTC
* *
6968095 CACTTGTCACTTGATCAGATAAATGTAGTTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
6968160 AGTACTCAAA
Statistics
Matches: 203, Mismatches: 6, Indels: 13
0.91 0.03 0.06
Matches are distributed among these distances:
144 43 0.21
146 1 0.00
147 1 0.00
150 154 0.76
151 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (144 bp):
CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
TAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
TACTTATCACTTTC
Found at i:6971338 original size:49 final size:50
Alignment explanation
Indices: 6971283--6971486 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
6971273 TTCGTTTTCT
*
6971283 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
6971332 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
6971381 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
6971439 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
6971487 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:6971453 original size:58 final size:59
Alignment explanation
Indices: 6971367--6971485 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
6971357 TACACGAAAT
6971367 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
6971425 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
6971484 CA
1 CA
6971486 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:6971466 original size:28 final size:28
Alignment explanation
Indices: 6971376--6971466 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
6971366 TCACATATCA
6971376 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
6971404 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
6971434 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
6971462 CTTAC
1 CTTAC
6971467 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:6972800 original size:37 final size:37
Alignment explanation
Indices: 6972739--6972921 Score: 307
Period size: 37 Copynumber: 5.0 Consensus size: 37
6972729 TACGTATGAT
* *
6972739 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
6972774 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6972811 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6972848 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
6972885 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6972922 TAAAGCTATC
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.06
36 3 0.02
37 128 0.91
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:6972964 original size:52 final size:52
Alignment explanation
Indices: 6972885--6973251 Score: 452
Period size: 52 Copynumber: 7.2 Consensus size: 52
6972875 TAAGTGTAGC
* * **
6972885 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6972938 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6972990 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
6973036 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6973088 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
6973134 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *** *
6973186 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6973238 CACTTTGTCACTTG
1 CACTTT-TCACTTG
6973252 ATCAGAAGTA
Statistics
Matches: 275, Mismatches: 26, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
46 83 0.30
49 1 0.00
52 175 0.64
53 16 0.06
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:6973026 original size:98 final size:98
Alignment explanation
Indices: 6972885--6973243 Score: 502
Period size: 98 Copynumber: 3.6 Consensus size: 98
6972875 TAAGTGTAGC
* * * * *
6972885 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
6972950 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6972983 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
** *
6973048 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6973081 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
*
6973146 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** *
6973179 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
6973244 GTCACTTGAT
Statistics
Matches: 234, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
98 191 0.82
100 1 0.00
104 42 0.18
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:6973252 original size:150 final size:144
Alignment explanation
Indices: 6972892--6973257 Score: 570
Period size: 150 Copynumber: 2.5 Consensus size: 144
6972882 AGCCACTTAT
* *
6972892 CACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGTCACTT
1 CACT-TGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTGTCACTT
*
6972957 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
59 GATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
6973022 AAGCTATTACTTATCACTTTC
124 AAGCTATTACTTATCACTTTC
6973043 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
*
6973108 TAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGA
66 TAAGTATAGCCGAAGCTATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGA
6973173 AGCTATTACTTATCACTTTC
125 AGCTATTACTTATCACTTTC
*
6973193 CACTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
6973258 AGTACTCAAA
Statistics
Matches: 204, Mismatches: 5, Indels: 13
0.92 0.02 0.06
Matches are distributed among these distances:
144 43 0.21
146 1 0.00
147 1 0.00
150 155 0.76
151 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (144 bp):
CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
TAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
TACTTATCACTTTC
Found at i:6976439 original size:49 final size:50
Alignment explanation
Indices: 6976384--6976587 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
6976374 TTCGTTTTCT
*
6976384 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
6976433 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
6976482 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
6976540 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
6976588 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:6976554 original size:58 final size:59
Alignment explanation
Indices: 6976468--6976586 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
6976458 TACACGAAAT
6976468 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
6976526 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
6976585 CA
1 CA
6976587 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:6976567 original size:28 final size:28
Alignment explanation
Indices: 6976477--6976567 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
6976467 TCACATATCA
6976477 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
6976505 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
6976535 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
6976563 CTTAC
1 CTTAC
6976568 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:6977902 original size:37 final size:37
Alignment explanation
Indices: 6977841--6978023 Score: 307
Period size: 37 Copynumber: 5.0 Consensus size: 37
6977831 TACGTATGAT
* *
6977841 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
6977876 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6977913 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6977950 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
* *
6977987 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
6978024 TAAAGCTATC
Statistics
Matches: 140, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
35 9 0.06
36 3 0.02
37 128 0.91
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:6978066 original size:52 final size:52
Alignment explanation
Indices: 6977987--6978353 Score: 452
Period size: 52 Copynumber: 7.2 Consensus size: 52
6977977 TAAGTGTAGC
* * **
6977987 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTAT
1 CACTTTTCACT-TGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6978040 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6978092 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* ** *
6978138 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *
6978190 CAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* * *
6978236 CACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
* *** *
6978288 CACTTTCCACTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTACCACTTAT
1 CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
6978340 CACTTTGTCACTTG
1 CACTTT-TCACTTG
6978354 ATCAGAAGTA
Statistics
Matches: 275, Mismatches: 26, Indels: 26
0.84 0.08 0.08
Matches are distributed among these distances:
46 83 0.30
49 1 0.00
52 175 0.64
53 16 0.06
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (52 bp):
CACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTAT
Found at i:6978128 original size:98 final size:98
Alignment explanation
Indices: 6977987--6978345 Score: 502
Period size: 98 Copynumber: 3.6 Consensus size: 98
6977977 TAAGTGTAGC
* * * * *
6977987 CACTTATCACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
6978052 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6978085 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
** *
6978150 GTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* *
6978183 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
*
6978248 GTCACTTGATCAGATAAGTATAGCCGAAGCTAT
66 GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
* * ** *
6978281 TACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTACCACTTATCACTTT
1 CACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTT
6978346 GTCACTTGAT
Statistics
Matches: 234, Mismatches: 21, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
98 191 0.82
100 1 0.00
104 42 0.18
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.35
Consensus pattern (98 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCAAAGCTATCACTTATCACTTTCCACTT
GTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
Found at i:6978354 original size:150 final size:144
Alignment explanation
Indices: 6977994--6978359 Score: 570
Period size: 150 Copynumber: 2.5 Consensus size: 144
6977984 AGCCACTTAT
* *
6977994 CACTCTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTTCACTTGTCACTT
1 CACT-TGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC---T---TTGTCACTT
*
6978059 GATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
59 GATCAGATAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCG
6978124 AAGCTATTACTTATCACTTTC
124 AAGCTATTACTTATCACTTTC
6978145 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
*
6978210 TAAGTATAGCCGAAGCTATTACTTATCACTTTCCACTTGTCACTTGATCAGATAAGTATAGCCGA
66 TAAGTATAGCCGAAGCTATCACTTATCAC--T----TTGTCACTTGATCAGATAAGTATAGCCGA
6978275 AGCTATTACTTATCACTTTC
125 AGCTATTACTTATCACTTTC
*
6978295 CACTTGTCACTTGATCAGATAAGTGTAGTTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
1 CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
6978360 AGTACTCAAA
Statistics
Matches: 204, Mismatches: 5, Indels: 13
0.92 0.02 0.06
Matches are distributed among these distances:
144 43 0.21
146 1 0.00
147 1 0.00
150 155 0.76
151 4 0.02
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.34
Consensus pattern (144 bp):
CACTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
TAAGTATAGCCGAAGCTATCACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
TACTTATCACTTTC
Found at i:6981549 original size:31 final size:31
Alignment explanation
Indices: 6981490--6981549 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
6981480 GTCACAAAAC
*
6981490 TATTCGAAAATTTTCATTTAAATTACTGAGT
1 TATTCGAAAATTTTCATTTAAATAACTGAGT
* *
6981521 TATTCGAAAGTTTTCATTTAAGTAACTGA
1 TATTCGAAAATTTTCATTTAAATAACTGA
6981550 ACTGTTTGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.35, C:0.10, G:0.12, T:0.43
Consensus pattern (31 bp):
TATTCGAAAATTTTCATTTAAATAACTGAGT
Found at i:6982375 original size:23 final size:23
Alignment explanation
Indices: 6982325--6982375 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 23
6982315 AAAGAAATAT
6982325 ATAAAAATACATAAATATTTTCAA
1 ATAAAAATACATAAATATTTT-AA
*
6982349 A-AAATATACA-ATAA-ATTTTAA
1 ATAAAAATACATA-AATATTTTAA
6982370 ATAAAA
1 ATAAAA
6982376 GATGGTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
21 3 0.13
22 9 0.39
23 10 0.43
24 1 0.04
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (23 bp):
ATAAAAATACATAAATATTTTAA
Found at i:6988804 original size:32 final size:31
Alignment explanation
Indices: 6988727--6988808 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
6988717 ATTCCTGCAT
* * * *
6988727 TAAAATCCAACCAAATATAACACATATAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
* * *
6988758 TAAAATGCAGCCAAAAACAACAAATTTAGCA
1 TAAAATACAACCAAAAACAACAAATATAGCA
6988789 TAAAAATACAACCAAAAACA
1 T-AAAATACAACCAAAAACA
6988809 TTAATTCTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 26 0.62
32 16 0.38
ACGTcount: A:0.59, C:0.21, G:0.05, T:0.16
Consensus pattern (31 bp):
TAAAATACAACCAAAAACAACAAATATAGCA
Found at i:6989064 original size:21 final size:21
Alignment explanation
Indices: 6989040--6989094 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
6989030 TCTGCTGCCA
*
6989040 TCGCTGCTGCCTCTGCCTTCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
6989061 TCGCTACTGCCGCTGCCTCCC
1 TCGCTGCTGCCTCTGCCTCCC
* *
6989082 TCTCTGTTGCCTC
1 TCGCTGCTGCCTC
6989095 CGCTCTAAGT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.02, C:0.47, G:0.18, T:0.33
Consensus pattern (21 bp):
TCGCTGCTGCCTCTGCCTCCC
Found at i:6989534 original size:13 final size:14
Alignment explanation
Indices: 6989509--6989537 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6989499 TGATGAATTG
6989509 AATTAAACAATTAT
1 AATTAAACAATTAT
6989523 AATTAAAC-ATTAT
1 AATTAAACAATTAT
6989536 AA
1 AA
6989538 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:6994087 original size:18 final size:18
Alignment explanation
Indices: 6994064--6994099 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
6994054 TGTAGAACTT
6994064 CGCCGCTTCTTCATTTGC
1 CGCCGCTTCTTCATTTGC
6994082 CGCCGCTTCTTCATTTGC
1 CGCCGCTTCTTCATTTGC
6994100 TTCCTCATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.06, C:0.39, G:0.17, T:0.39
Consensus pattern (18 bp):
CGCCGCTTCTTCATTTGC
Found at i:6994715 original size:27 final size:27
Alignment explanation
Indices: 6994685--6994826 Score: 173
Period size: 27 Copynumber: 5.1 Consensus size: 27
6994675 GCTTAGCAAG
6994685 TTATGTAAGTTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
*
6994712 TTATGTAAGCTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
*
6994739 TTATGTAAGCTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
*
6994766 TTATGATATA-TATATT-TATGTATTATTTAAGT
1 TTATG-TA-AGT-TATTATATG-A-TATAT-A-T
6994798 TT-TGTAAGTTATTATATGATATATAT
1 TTATGTAAGTTATTATATGATATATAT
6994824 TTA
1 TTA
6994827 ACATTAAGAT
Statistics
Matches: 101, Mismatches: 4, Indels: 20
0.81 0.03 0.16
Matches are distributed among these distances:
26 3 0.03
27 59 0.58
28 10 0.10
29 12 0.12
30 11 0.11
31 3 0.03
32 3 0.03
ACGTcount: A:0.36, C:0.01, G:0.11, T:0.52
Consensus pattern (27 bp):
TTATGTAAGTTATTATATGATATATAT
Found at i:6994725 original size:13 final size:14
Alignment explanation
Indices: 6994686--6994757 Score: 57
Period size: 14 Copynumber: 5.3 Consensus size: 14
6994676 CTTAGCAAGT
*
6994686 TATGTAAGTTATTA
1 TATGTAAGCTATTA
6994700 TATGATATA--TATT-
1 TATG-TA-AGCTATTA
6994713 TATGTAAGCTATTA
1 TATGTAAGCTATTA
6994727 TATGATATA--TATT-
1 TATG-TA-AGCTATTA
6994740 TATGTAAGCTATTA
1 TATGTAAGCTATTA
6994754 TATG
1 TATG
6994758 ATATATATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 20
0.71 0.00 0.29
Matches are distributed among these distances:
11 2 0.04
12 4 0.08
13 16 0.33
14 20 0.42
15 4 0.08
16 2 0.04
ACGTcount: A:0.36, C:0.03, G:0.12, T:0.49
Consensus pattern (14 bp):
TATGTAAGCTATTA
Found at i:6995513 original size:88 final size:87
Alignment explanation
Indices: 6995405--6995564 Score: 230
Period size: 88 Copynumber: 1.8 Consensus size: 87
6995395 TAGGGCTTAA
** * ** * * * *
6995405 TTTTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGT
1 TTTTTTTTAAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAAT
6995470 GAAAAAAGTAGGGGTTTAATTAC
66 -AAAAAAGTAGGGGTTTAATTAC
6995493 TTTTTTTTAAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAAT
1 TTTTTTTTAAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAAT
6995558 AAAAAAG
66 AAAAAAG
6995565 AACAAGGAGC
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
87 7 0.11
88 56 0.89
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (87 bp):
TTTTTTTTAAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAAT
AAAAAAGTAGGGGTTTAATTAC
Found at i:6995596 original size:88 final size:87
Alignment explanation
Indices: 6995407--6995596 Score: 211
Period size: 88 Copynumber: 2.1 Consensus size: 87
6995397 GGGCTTAATT
** * * * *
6995407 TTTTTTTGAAAAAGTTTGAGGGCCTTTTTGATGCATTTTGAAAGTTTAAGTACCCAATTGAGTGA
1 TTTTTTTGAAAAAGTTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATGA
* * * **
6995472 AAAAAGTAGGGGTTTAATTACT
66 AAAAAGAAGGAGCTTAATTAAA
* *
6995494 TTTTTTTAAAAAAAATTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAAT-
1 TTTTTTT-GAAAAAGTTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATG
*
6995558 AAAAAAGAACAAGGAGCTTAGTTAAA
65 AAAAAAG---AAGGAGCTTAATTAAA
6995584 TTTTTTTGAAAAA
1 TTTTTTTGAAAAA
6995597 AATTAAGGGT
Statistics
Matches: 84, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
87 14 0.17
88 48 0.57
89 5 0.06
90 17 0.20
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.37
Consensus pattern (87 bp):
TTTTTTTGAAAAAGTTTGAGAACCTTTTTGATACATTTTAAAAGTTTAAGTACCCAAATGAATGA
AAAAAGAAGGAGCTTAATTAAA
Found at i:6997763 original size:81 final size:81
Alignment explanation
Indices: 6997650--6997868 Score: 368
Period size: 81 Copynumber: 2.7 Consensus size: 81
6997640 GTTTTAGTAA
*
6997650 AAAACGCCGCGAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCAT
1 AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCAT
* * *
6997715 TAGCGGCGCTTTTGG-
66 TAGCAGCACTATTGGC
*
6997730 AAAACACCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCA
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCA
6997795 TTAGCAGCACTATTGGC
65 TTAGCAGCACTATTGGC
6997812 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA-CAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAA
6997869 TCATATAACC
Statistics
Matches: 130, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
80 14 0.11
81 61 0.47
82 55 0.42
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.16
Consensus pattern (81 bp):
AAAACGCCGCTAAAAACAGAGCATTAGCGGCGCTTTTGGCAAAACGCCGCTAAAAACCAGAGCAT
TAGCAGCACTATTGGC
Found at i:6997871 original size:41 final size:41
Alignment explanation
Indices: 6997650--6997868 Score: 370
Period size: 41 Copynumber: 5.4 Consensus size: 41
6997640 GTTTTAGTAA
*
6997650 AAAACGCCGCGAAAAA-CAGAGCATTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
6997690 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGG-
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
*
6997730 AAAACACCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
* * *
6997771 AAAACGCCGCTAAAAACCAGAGCATTAGCAGCACTATTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
*
6997812 AAAACGCCGCTAAAAATCAGAGCATTAGCGGCGCTTTTGGC
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
6997853 AAAACGCCGCTAAAAA
1 AAAACGCCGCTAAAAA
6997869 TCATATAACC
Statistics
Matches: 167, Mismatches: 10, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
40 54 0.32
41 113 0.68
ACGTcount: A:0.36, C:0.26, G:0.23, T:0.16
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGC
Found at i:6998060 original size:21 final size:21
Alignment explanation
Indices: 6998036--6998116 Score: 81
Period size: 21 Copynumber: 3.7 Consensus size: 21
6998026 ATAGTTTATG
*
6998036 GTTTATGGTTTAAGATATATA
1 GTTTAGGGTTTAAGATATATA
* *
6998057 GTTTAGGGTTTAAGATTTTTGA
1 GTTTAGGGTTTAAGATATAT-A
* *
6998079 GTTAACTATGGTTTAAGATATATG
1 GTT---TAGGGTTTAAGATATATA
6998103 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
6998117 GTTTAGGAGT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
21 27 0.56
22 4 0.08
24 3 0.06
25 14 0.29
ACGTcount: A:0.28, C:0.01, G:0.25, T:0.46
Consensus pattern (21 bp):
GTTTAGGGTTTAAGATATATA
Found at i:6998107 original size:46 final size:46
Alignment explanation
Indices: 6998039--6998132 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
6998029 GTTTATGGTT
**
6998039 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTTTGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAAC
* *
6998085 TATGGTTTAAGATATATGGTTTAGGGTTTAAGGTTTAGGAGTTAAC
1 TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAAC
6998131 TA
1 TA
6998133 GTATTTGAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (46 bp):
TATGGTTTAAGATATATAGTTTAGGGTTTAAGATTTAGGAGTTAAC
Found at i:6998218 original size:21 final size:22
Alignment explanation
Indices: 6998182--6998249 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
6998172 ATAATTATGG
*
6998182 GTTTAGGGGTT-AGGG-TTGGA
1 GTTTAAGGGTTAAGGGTTTGGA
6998202 GTTTAA-GGTGTAAGGGTTTGG-
1 GTTTAAGGGT-TAAGGGTTTGGA
* *
6998223 GGTTAAGGGTTAAGGGTTTAGA
1 GTTTAAGGGTTAAGGGTTTGGA
6998245 GTTTA
1 GTTTA
6998250 GAATAATAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
19 3 0.08
20 6 0.15
21 19 0.49
22 11 0.28
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.37
Consensus pattern (22 bp):
GTTTAAGGGTTAAGGGTTTGGA
Found at i:6998767 original size:23 final size:23
Alignment explanation
Indices: 6998706--6998768 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
6998696 TAATATCCTA
*
6998706 TATATGTAATTGTATTTAAATTT
1 TATATGTAATTGTATTAAAATTT
*
6998729 T-TAATTTATATT-TATTAAAATTT
1 TAT-ATGTA-ATTGTATTAAAATTT
6998752 TATATGTAATTGTATTA
1 TATATGTAATTGTATTA
6998769 GCATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 8
0.75 0.07 0.18
Matches are distributed among these distances:
22 4 0.12
23 25 0.76
24 4 0.12
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (23 bp):
TATATGTAATTGTATTAAAATTT
Found at i:7004019 original size:43 final size:43
Alignment explanation
Indices: 7003921--7004020 Score: 137
Period size: 43 Copynumber: 2.3 Consensus size: 43
7003911 TAATTTTTAT
* * **
7003921 GACCTTTAGCGGCGTTTTTTGGAAAAGCGCCGCTAAAGGTCCT
1 GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAG
* * *
7003964 GATCTTTGGCGGCGTTTGTGGGAAAGGCGCCGCTAAAGGTCAG
1 GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAG
7004007 GACCTTTAGCGGCG
1 GACCTTTAGCGGCG
7004021 CCATCTATAG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.19, C:0.22, G:0.34, T:0.25
Consensus pattern (43 bp):
GACCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAG
Found at i:7004378 original size:26 final size:27
Alignment explanation
Indices: 7004335--7004385 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
7004325 TTTCGGAATA
7004335 AAAAAATTATGTATATATAGCATTTGC
1 AAAAAATTATGTATATATAGCATTTGC
*
7004362 AAAAAATTCAT-TA-ATATAGGATTT
1 AAAAAATT-ATGTATATATAGCATTT
7004386 AATTATAGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 10 0.45
27 10 0.45
28 2 0.09
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (27 bp):
AAAAAATTATGTATATATAGCATTTGC
Found at i:7005605 original size:20 final size:19
Alignment explanation
Indices: 7005580--7005635 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
7005570 CTTCGGATGC
7005580 TTAGGGATTTGGGGGAAAAT
1 TTAGGGA-TTGGGGGAAAAT
*
7005600 TTAGGGATT-AGGGAAAAT
1 TTAGGGATTGGGGGAAAAT
* *
7005618 GTAGTGAATTGGGGGAAA
1 TTAG-GGATTGGGGGAAA
7005636 TCTGTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
18 11 0.37
19 6 0.20
20 13 0.43
ACGTcount: A:0.34, C:0.00, G:0.39, T:0.27
Consensus pattern (19 bp):
TTAGGGATTGGGGGAAAAT
Found at i:7006030 original size:14 final size:14
Alignment explanation
Indices: 7005995--7006031 Score: 67
Period size: 13 Copynumber: 2.7 Consensus size: 14
7005985 TATTATATCT
7005995 TAAATAATTTAATC
1 TAAATAATTTAATC
7006009 TAAA-AATTTAATC
1 TAAATAATTTAATC
7006022 TAAATAATTT
1 TAAATAATTT
7006032 CATTTTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATAATTTAATC
Found at i:7006224 original size:14 final size:14
Alignment explanation
Indices: 7006207--7006237 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
7006197 ATAAACCCTA
7006207 AACCCCTAACCCGT
1 AACCCCTAACCCGT
7006221 AACCCCTAACCCGT
1 AACCCCTAACCCGT
7006235 AAC
1 AAC
7006238 TATTAACCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.48, G:0.06, T:0.13
Consensus pattern (14 bp):
AACCCCTAACCCGT
Found at i:7006286 original size:8 final size:7
Alignment explanation
Indices: 7006198--7006386 Score: 52
Period size: 7 Copynumber: 26.9 Consensus size: 7
7006188 ACGGTACACA
7006198 TAAACCC
1 TAAACCC
7006205 TAAACCCC
1 TAAA-CCC
7006213 T-AACCC
1 TAAACCC
*
7006219 GTAACCCC
1 -TAAACCC
7006227 T-AACCC
1 TAAACCC
**
7006233 GT-AACTAT
1 -TAAAC-CC
*
7006241 TAACCCC
1 TAAACCC
*
7006248 TAAACCT
1 TAAACCC
*
7006255 TAAACCA
1 TAAACCC
** *
7006262 TAATTCA
1 TAAACCC
7006269 TAAACCC
1 TAAACCC
7006276 TAAACCCC
1 TAAA-CCC
7006284 T-AACCC
1 TAAACCC
* *
7006290 TATACCA
1 TAAACCC
*
7006297 TAAACCA
1 TAAACCC
*
7006304 TAAAACCA
1 T-AAACCC
*
7006312 TAAACCT
1 TAAACCC
* *
7006319 TACA-CA
1 TAAACCC
7006325 TAAACCC
1 TAAACCC
7006332 TAAACCC
1 TAAACCC
*
7006339 -ATAACACG
1 TA-AAC-CC
*
7006347 T-AACCT
1 TAAACCC
*
7006353 TTAACCC
1 TAAACCC
*
7006360 TAAACCT
1 TAAACCC
7006367 TAAACCC
1 TAAACCC
*
7006374 -CAACCC
1 TAAACCC
7006380 TTAAACC
1 -TAAACC
7006387 ATAATTCTAA
Statistics
Matches: 135, Mismatches: 31, Indels: 31
0.69 0.16 0.16
Matches are distributed among these distances:
6 23 0.17
7 86 0.64
8 26 0.19
ACGTcount: A:0.41, C:0.38, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:7006298 original size:28 final size:28
Alignment explanation
Indices: 7006267--7006365 Score: 103
Period size: 28 Copynumber: 3.5 Consensus size: 28
7006257 AACCATAATT
*
7006267 CATAAACCCTAAACCCCTAACCCTATAC
1 CATAAACCCTAAACCCATAACCCTATAC
* * *
7006295 CATAAACCATAAAACCATAAACCT-TAC
1 CATAAACCCTAAACCCATAACCCTATAC
*
7006322 ACATAAACCCTAAACCCATAACACGTA-AC
1 -CATAAACCCTAAACCCATAAC-CCTATAC
* *
7006351 CTTTAACCCTAAACC
1 CATAAACCCTAAACC
7006366 TTAAACCCCA
Statistics
Matches: 58, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
27 3 0.05
28 51 0.88
29 4 0.07
ACGTcount: A:0.44, C:0.36, G:0.01, T:0.18
Consensus pattern (28 bp):
CATAAACCCTAAACCCATAACCCTATAC
Found at i:7006690 original size:16 final size:16
Alignment explanation
Indices: 7006653--7006700 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
7006643 CTAACCCCTG
*
7006653 ACCCC-TAACCCTTAA
1 ACCCCATAATCCTTAA
7006668 A--CCATAATCCTTAA
1 ACCCCATAATCCTTAA
*
7006682 ACCCCATAATCCCTAA
1 ACCCCATAATCCTTAA
7006698 ACC
1 ACC
7006701 TTAAAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 2 0.07
14 10 0.36
15 1 0.04
16 15 0.54
ACGTcount: A:0.38, C:0.42, G:0.00, T:0.21
Consensus pattern (16 bp):
ACCCCATAATCCTTAA
Found at i:7006922 original size:24 final size:23
Alignment explanation
Indices: 7006887--7006938 Score: 54
Period size: 24 Copynumber: 2.2 Consensus size: 23
7006877 TTTAAAATTA
7006887 TTTTAAATAATAGTATTT-TATCAT
1 TTTTAAATAATA-TATTTCTAT-AT
*
7006911 TTTTAACA-AATATTTTTCTATAT
1 TTTTAA-ATAATATATTTCTATAT
7006934 TTTTA
1 TTTTA
7006939 CTTTCAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
23 11 0.44
24 13 0.52
25 1 0.04
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTAAATAATATATTTCTATAT
Found at i:7015956 original size:119 final size:119
Alignment explanation
Indices: 7015740--7015981 Score: 439
Period size: 119 Copynumber: 2.0 Consensus size: 119
7015730 TGTACTTAAA
* *
7015740 TTTATGTCTTTTTACATTGACAACAATATCGATGTCAACTGTGTTAAAACTCAAATAACAAATTT
1 TTTAAGTCTTTTTACATTGACAACAATATCGATGTCAACTGAGTTAAAACTCAAATAACAAATTT
7015805 ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
66 ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
* *
7015859 TTTAAGTCTTTTTCCATTGACAACAATATCGATGTCAACTGAGTTAAAACTCAAATGACAAATTT
1 TTTAAGTCTTTTTACATTGACAACAATATCGATGTCAACTGAGTTAAAACTCAAATAACAAATTT
*
7015924 ATTAATGCAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
66 ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
7015978 TTTA
1 TTTA
7015982 CCCTAATAGG
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
119 118 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (119 bp):
TTTAAGTCTTTTTACATTGACAACAATATCGATGTCAACTGAGTTAAAACTCAAATAACAAATTT
ATTAATACAAAGTAAGGAATTACACAACCCTAATAGGTACCAAACAAAGAGGAG
Found at i:7015988 original size:31 final size:31
Alignment explanation
Indices: 7015950--7016011 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7015940 GAATTACACA
7015950 ACCCTAATAGGTACCAAACAAAGAGGAGTTT
1 ACCCTAATAGGTACCAAACAAAGAGGAGTTT
7015981 ACCCTAATAGGTACCAAACAAAGAGGAGTTT
1 ACCCTAATAGGTACCAAACAAAGAGGAGTTT
7016012 TCTTGAATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (31 bp):
ACCCTAATAGGTACCAAACAAAGAGGAGTTT
Found at i:7021553 original size:75 final size:76
Alignment explanation
Indices: 7021393--7021606 Score: 324
Period size: 75 Copynumber: 2.8 Consensus size: 76
7021383 TTTCTGTAAA
* * * * *
7021393 TATTCAACTAAATCAATAATAAATAAAACATAATTATAAATAATATAATTAAAAACTTAAGTAAC
1 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATAAC
7021458 TTTTTTTCAAT
66 TTTTTTTCAAT
7021469 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAAT-ATATAATTAAAAACTTAAATAAC
1 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATAAC
7021533 ATTTTTTT-AAT
66 -TTTTTTTCAAT
* * * *
7021544 TATTTACCTAAATGAATGGTAAATAAAATATAATTATAAATAATATAACTAAAAATTTAAATA
1 TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATA
7021607 GCATATTGAA
Statistics
Matches: 127, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
75 64 0.50
76 63 0.50
ACGTcount: A:0.53, C:0.07, G:0.03, T:0.37
Consensus pattern (76 bp):
TATTCACCTAAATGAATGATAAATAAAATATAATTATAAATAATATAATTAAAAACTTAAATAAC
TTTTTTTCAAT
Found at i:7027540 original size:39 final size:39
Alignment explanation
Indices: 7027486--7027561 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
7027476 AGAAAAGGGG
7027486 AATTTGTTCATTGAGAACTGATAATGCGCTGAATTGAGA
1 AATTTGTTCATTGAGAACTGATAATGCGCTGAATTGAGA
7027525 AATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
1 AATTTGTTCATTGAGAACTGATAATGCGCTGAATTGA
7027562 CATATTTTTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (39 bp):
AATTTGTTCATTGAGAACTGATAATGCGCTGAATTGAGA
Found at i:7029905 original size:30 final size:30
Alignment explanation
Indices: 7029837--7029905 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
7029827 CTAATTGTTG
*
7029837 AAAATTCAATTTAATCTATAAAATCAAATC
1 AAAATTCAATTTAATCTATAAAATCAAATA
* * * *
7029867 AAATTTCAATTTAGTCT-TGAAATTAAATTA
1 AAAATTCAATTTAATCTATAAAATCAAA-TA
7029897 AAAATTCAA
1 AAAATTCAA
7029906 ACACAAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 8 0.25
30 24 0.75
ACGTcount: A:0.51, C:0.10, G:0.03, T:0.36
Consensus pattern (30 bp):
AAAATTCAATTTAATCTATAAAATCAAATA
Found at i:7030131 original size:42 final size:42
Alignment explanation
Indices: 7030038--7030183 Score: 168
Period size: 43 Copynumber: 3.4 Consensus size: 42
7030028 AGAAAAATGC
* * * *
7030038 CGCTATAGAACATAACCTTTAGTGGCGCTTTTTTCACAAA-TA
1 CGCTATAGAACATGACCTTTAGCGGC-CTTTTTCCACAAACGA
*
7030080 CCGCTATAGAACATGACCTTTAGCGGCCCTTTTCCACAAACGA
1 -CGCTATAGAACATGACCTTTAGCGGCCTTTTTCCACAAACGA
* * ** *
7030123 CGTTATAGAACAAGACCTTTAGCGGTATTTTTCCCACAAACGG
1 CGCTATAGAACATGACCTTTAGCGGCCTTTTT-CCACAAACGA
7030166 CGCTATAGAACATGACCT
1 CGCTATAGAACATGACCT
7030184 ACGCCACTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 38 0.43
43 50 0.57
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
CGCTATAGAACATGACCTTTAGCGGCCTTTTTCCACAAACGA
Found at i:7030238 original size:150 final size:150
Alignment explanation
Indices: 7030040--7030330 Score: 356
Period size: 150 Copynumber: 1.9 Consensus size: 150
7030030 AAAAATGCCG
* * * *
7030040 CTATAGAACATAACCTTTAGTGGCGCTTTTTTCACAAATACCGCTATAGAACATGACCTTTAGCG
1 CTATAGAACATAACCTTTAGTGGCGCTTTTTCCACAAACACCGCTATAGAACAAGACCTTTAGCA
* * * ** *
7030105 GCCCTTTT-CCACAAACGA-CGTTATAGAACAAGACCTTTAGCGGTATTTTTCCCACAAACGGCG
66 ACACTTTTCCCACAAA-AACCGTTATAGAACAAGACCTTTAGCGG-AGCTTTCCCACAAACGGAG
7030168 CTATAGAACATGACCTACGCCA
129 CTATAGAACATGACCTACGCCA
* * *
7030190 CTATAGAACA-AGACCTTTAGTGGCG-TTTTTCCCACAAACGCTGCTATAGAATAAGACCTTTAG
1 CTATAGAACATA-ACCTTTAGTGGCGCTTTTT-CCACAAACACCGCTATAGAACAAGACCTTTAG
* * * * *
7030253 CAACACTTTTCCCACAAAAACCGTTGTAGAACATGACCTTTAGCGGCGCTTTCCCACAAATGTAG
64 CAACACTTTTCCCACAAAAACCGTTATAGAACAAGACCTTTAGCGGAGCTTTCCCACAAACGGAG
7030318 CTATAGAACATGA
129 CTATAGAACATGA
7030331 TCTTTAGCGG
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
149 6 0.05
150 83 0.70
151 30 0.25
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (150 bp):
CTATAGAACATAACCTTTAGTGGCGCTTTTTCCACAAACACCGCTATAGAACAAGACCTTTAGCA
ACACTTTTCCCACAAAAACCGTTATAGAACAAGACCTTTAGCGGAGCTTTCCCACAAACGGAGCT
ATAGAACATGACCTACGCCA
Found at i:7030248 original size:65 final size:65
Alignment explanation
Indices: 7030126--7030248 Score: 185
Period size: 65 Copynumber: 1.9 Consensus size: 65
7030116 CAAACGACGT
* *
7030126 TATAGAACAAGACCTTTAGCGGTATTTTTCCCACAAACGGCGCTATAGAACATGACCTACGCCAC
1 TATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGCTATAGAACAAGACCTACGCCAC
* * *
7030191 TATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAAC-GCTGCTATAGAATAAGACCT
1 TATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGC-GCTATAGAACAAGACCT
7030249 TTAGCAACAC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
64 2 0.04
65 50 0.96
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (65 bp):
TATAGAACAAGACCTTTAGCGGCATTTTTCCCACAAACGGCGCTATAGAACAAGACCTACGCCAC
Found at i:7030283 original size:108 final size:107
Alignment explanation
Indices: 7030083--7030291 Score: 258
Period size: 108 Copynumber: 1.9 Consensus size: 107
7030073 ACAAATACCG
* * **
7030083 CTATAGAACATGACCTTTAGCGGCCCTTTTCCACAAACGACGTTATAGAACAAGACCTTTAGCGG
1 CTATAGAACAAGACCTTTAGCGGCCCTTTTCCACAAACGACGCTATAGAACAAGACCTTTAGCAA
* * ***
7030148 TATTTTTCCCACAAACGGCGCTATAGAACATGACCTACGCCA
66 CACTTTTCCCACAAAAACCGCTATAGAACATGACCTACGCCA
* ** *
7030190 CTATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAACG-CTGCTATAGAATAAGACCTTTAGC
1 CTATAGAACAAGACCTTTAGCGGCCCTTTT-CCACAAACGAC-GCTATAGAACAAGACCTTTAGC
* *
7030254 AACACTTTTCCCACAAAAACCGTTGTAGAACATGACCT
64 AACACTTTTCCCACAAAAACCGCTATAGAACATGACCT
7030292 TTAGCGGCGC
Statistics
Matches: 85, Mismatches: 15, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
107 27 0.32
108 58 0.68
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (107 bp):
CTATAGAACAAGACCTTTAGCGGCCCTTTTCCACAAACGACGCTATAGAACAAGACCTTTAGCAA
CACTTTTCCCACAAAAACCGCTATAGAACATGACCTACGCCA
Found at i:7030325 original size:42 final size:43
Alignment explanation
Indices: 7030184--7030462 Score: 296
Period size: 42 Copynumber: 6.6 Consensus size: 43
7030174 AACATGACCT
* * * *
7030184 ACGCCACTATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAA
1 ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
* * * ** *
7030227 ACGCTGCTATAGAATAAGACCTTTAGCAACACTTTTCCCACAA
1 ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
** * *
7030270 AAACCGTTGTAGAACATGACCTTTAGCGGCGC-TTTCCCACAA
1 ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
* ** * *
7030312 ATGTAGCTATAGAACATGATCTTTAGCGGCACTTTTCCCACAA
1 ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
* * *
7030355 ACGCTGCTATAGAACA-GACCTTTAGTGGCGCTTTTCCCAAAA
1 ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
* * *
7030397 ACGCCACTATAAAACA-GACCTTTAGCGGCGCTTTTCCCAAAA
1 ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
*
7030439 ACGCCGCTAAAGAACATGA-CTTTA
1 ACGCCGCTATAGAACATGACCTTTA
7030463 AAAAAATATT
Statistics
Matches: 194, Mismatches: 40, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
42 112 0.58
43 82 0.42
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (43 bp):
ACGCCGCTATAGAACATGACCTTTAGCGGCGCTTTTCCCACAA
Found at i:7030337 original size:85 final size:84
Alignment explanation
Indices: 7030190--7030462 Score: 257
Period size: 85 Copynumber: 3.2 Consensus size: 84
7030180 ACCTACGCCA
* *
7030190 CTATAGAACAAGACCTTTAGTGGCGTTTTTCCCACAAACGCTGCTATAGAATAAGACCTTTAGCA
1 CTATAGAAC-AGACCTTTAGTGGCG-CTTTCCCACAAACGCTGCTATAGAACAAGACCTTTAGCA
7030255 ACACTTTTCCCACAAAAACCG
64 ACACTTTTCCCACAAAAACCG
* * * * * * *
7030276 TTGTAGAACATGACCTTTAGCGGCGCTTTCCCACAAATG-TAGCTATAGAACATGATCTTTAGCG
1 CTATAGAACA-GACCTTTAGTGGCGCTTTCCCACAAACGCT-GCTATAGAACAAGACCTTTAGCA
* ** *
7030340 GCACTTTTCCCACAAACGCTG
64 ACACTTTTCCCACAAAAACCG
* ** * **
7030361 CTATAGAACAGACCTTTAGTGGCGCTTTTCCCAAAAACGCCACTATAAAAC-AGACCTTTAGCGG
1 CTATAGAACAGACCTTTAGTGGCGC-TTTCCCACAAACGCTGCTATAGAACAAGACCTTTAGCAA
* *
7030425 CGCTTTTCCCA-AAAACGCCG
65 CACTTTTCCCACAAAA-ACCG
*
7030445 CTAAAGAACATGA-CTTTA
1 CTATAGAACA-GACCTTTA
7030463 AAAAAATATT
Statistics
Matches: 154, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
83 3 0.02
84 53 0.34
85 78 0.51
86 20 0.13
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.26
Consensus pattern (84 bp):
CTATAGAACAGACCTTTAGTGGCGCTTTCCCACAAACGCTGCTATAGAACAAGACCTTTAGCAAC
ACTTTTCCCACAAAAACCG
Found at i:7042667 original size:12 final size:12
Alignment explanation
Indices: 7042650--7042696 Score: 58
Period size: 12 Copynumber: 3.7 Consensus size: 12
7042640 CATGTCCTGC
7042650 TCGACCACGACA
1 TCGACCACGACA
7042662 TCGACCACGACCA
1 TCGACCACGA-CA
*
7042675 TAGCCACCACGACA
1 T--CGACCACGACA
7042689 TCGACCAC
1 TCGACCAC
7042697 CAGGATAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 16 0.53
13 3 0.10
14 3 0.10
15 8 0.27
ACGTcount: A:0.32, C:0.45, G:0.15, T:0.09
Consensus pattern (12 bp):
TCGACCACGACA
Found at i:7048856 original size:97 final size:99
Alignment explanation
Indices: 7048655--7048865 Score: 266
Period size: 97 Copynumber: 2.2 Consensus size: 99
7048645 GCCAAAACCA
* * * *
7048655 AAAAATAAAAATAAAAATTACTGGTCTGGTGCCGACAATTACATGGCCAGAACAAATTTTTTTTT
1 AAAAGTAAAAAAAAAAATTACTAGTCTGGTGCAGACAATTACATGGCCAGAACAAATTTTTTTTT
* * *
7048720 TAAATTATTGGTTTAGTGCTGGCCATCAATGTAG
66 TAAATAACTGGTCTAGTGCTGGCCATCAATGTAG
* * * * *
7048754 AAAAGTAAAAAAAAAAATTACTAGTGTGGTGCAGGCCATTACATGGCCAGTAC-CA-TTTTTTTT
1 AAAAGTAAAAAAAAAAATTACTAGTCTGGTGCAGACAATTACATGGCCAGAACAAATTTTTTTTT
* *
7048817 TAAATAACTGGTCTGGTG-TCGGCCATCAGTGTAG
66 TAAATAACTGGTCTAGTGCT-GGCCATCAATGTAG
7048851 AAAAGTAAAAAAAAA
1 AAAAGTAAAAAAAAA
7048866 TTGCATTGGG
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
96 1 0.01
97 50 0.52
98 1 0.01
99 45 0.46
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (99 bp):
AAAAGTAAAAAAAAAAATTACTAGTCTGGTGCAGACAATTACATGGCCAGAACAAATTTTTTTTT
TAAATAACTGGTCTAGTGCTGGCCATCAATGTAG
Found at i:7049166 original size:35 final size:35
Alignment explanation
Indices: 7049120--7049186 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
7049110 TTTTTTCTTT
7049120 TTATTCTGTCACGG-TTGGAGTCGTGGGCACGATGC
1 TTATTCTGTCACGGCTT-GAGTCGTGGGCACGATGC
*
7049155 TTATTCTGTCACGGCTTGAGTTGTGGGCACGA
1 TTATTCTGTCACGGCTTGAGTCGTGGGCACGA
7049187 CGCGGATCTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
35 28 0.93
36 2 0.07
ACGTcount: A:0.15, C:0.19, G:0.33, T:0.33
Consensus pattern (35 bp):
TTATTCTGTCACGGCTTGAGTCGTGGGCACGATGC
Found at i:7056691 original size:10 final size:9
Alignment explanation
Indices: 7056675--7056763 Score: 56
Period size: 9 Copynumber: 8.9 Consensus size: 9
7056665 ATAATGTTCA
7056675 AAAAAAAAG
1 AAAAAAAAG
*
7056684 ACAAAAAAACAC
1 --AAAAAAA-AG
7056696 AAAAAAAAG
1 AAAAAAAAG
7056705 AAAAAATAATTCG
1 AAAAAA-AA---G
7056718 AAAAAAAAG
1 AAAAAAAAG
7056727 AAAAAAAA-
1 AAAAAAAAG
7056735 AAGAAAAAA-
1 AA-AAAAAAG
7056744 AAAAGAAAAG
1 AAAA-AAAAG
7056754 TTAAAAAAAA
1 --AAAAAAAA
7056764 AGGTTTGATG
Statistics
Matches: 66, Mismatches: 2, Indels: 20
0.75 0.02 0.23
Matches are distributed among these distances:
8 4 0.06
9 28 0.42
10 9 0.14
11 11 0.17
12 7 0.11
13 7 0.11
ACGTcount: A:0.82, C:0.04, G:0.08, T:0.06
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:7056750 original size:11 final size:11
Alignment explanation
Indices: 7056674--7056752 Score: 79
Period size: 11 Copynumber: 7.3 Consensus size: 11
7056664 GATAATGTTC
7056674 AAAAAAAAAG-
1 AAAAAAAAAGA
* *
7056684 ACAAAAAAACA
1 AAAAAAAAAGA
*
7056695 CAAAAAAAAGA
1 AAAAAAAAAGA
* ***
7056706 AAAAATAATTC
1 AAAAAAAAAGA
*
7056717 GAAAAAAAAGA
1 AAAAAAAAAGA
7056728 AAAAAAAAAGA
1 AAAAAAAAAGA
7056739 AAAAAAAAAGA
1 AAAAAAAAAGA
7056750 AAA
1 AAA
7056753 GTTAAAAAAA
Statistics
Matches: 52, Mismatches: 16, Indels: 1
0.75 0.23 0.01
Matches are distributed among these distances:
10 8 0.15
11 44 0.85
ACGTcount: A:0.84, C:0.05, G:0.08, T:0.04
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:7056759 original size:17 final size:16
Alignment explanation
Indices: 7056674--7056765 Score: 66
Period size: 17 Copynumber: 5.6 Consensus size: 16
7056664 GATAATGTTC
7056674 AAAAAAAAAGACAAA-A
1 AAAAAAAAAGA-AAAGA
*
7056690 AAACACAAAA-AAAAGA
1 AAA-AAAAAAGAAAAGA
**
7056706 AAAAATAATTCGAAAA-A
1 AAAAA-AA-AAGAAAAGA
7056723 AAAGAAAAAA-AAAAGA
1 AAA-AAAAAAGAAAAGA
*
7056739 AAAAAAAAAGAAAAGTT
1 AAAAAAAAAGAAAAG-A
7056756 AAAAAAAAAG
1 AAAAAAAAAG
7056766 GTTTGATGAT
Statistics
Matches: 60, Mismatches: 7, Indels: 17
0.71 0.08 0.20
Matches are distributed among these distances:
15 14 0.23
16 19 0.32
17 21 0.35
18 6 0.10
ACGTcount: A:0.82, C:0.04, G:0.09, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAGAAAAGA
Found at i:7057536 original size:35 final size:35
Alignment explanation
Indices: 7057490--7057559 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
7057480 TTTTTTCTTT
*
7057490 TTATTCTGTCACGGTTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
7057525 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
7057560 GGATCTGACG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.14, C:0.24, G:0.34, T:0.27
Consensus pattern (35 bp):
TTATTCTGTCACGGCTGGAGTCGTGGGCACGACGC
Found at i:7065124 original size:27 final size:27
Alignment explanation
Indices: 7065092--7065171 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
7065082 GAGATATTTT
*
7065092 GATATTTTATAATTATTTTATTAGATAA
1 GATATTTTATTATTATTTTATTA-ATAA
*
7065120 -ATATTATT-TTATTAATATT-TTAATAA
1 GATATT-TTATTATT-ATTTTATTAATAA
7065146 GATATTTTATTATTATTTTATTAATA
1 GATATTTTATTATTATTTTATTAATA
7065172 TATAAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
26 10 0.23
27 28 0.64
28 6 0.14
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (27 bp):
GATATTTTATTATTATTTTATTAATAA
Found at i:7065138 original size:11 final size:11
Alignment explanation
Indices: 7065124--7065172 Score: 62
Period size: 11 Copynumber: 4.3 Consensus size: 11
7065114 AGATAAATAT
7065124 TATTTTATTAA
1 TATTTTATTAA
*
7065135 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
7065148 TATTTTATTAT
1 TATTTTATTAA
7065159 TATTTTATTAA
1 TATTTTATTAA
7065170 TAT
1 TAT
7065173 ATAAAGAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 19 0.59
12 6 0.19
13 7 0.22
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:7065151 original size:24 final size:24
Alignment explanation
Indices: 7065124--7065174 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7065114 AGATAAATAT
7065124 TATTTTATTAATATTTTAATAAGA
1 TATTTTATTAATATTTTAATAAGA
* * *
7065148 TATTTTATTATTATTTTATTAATA
1 TATTTTATTAATATTTTAATAAGA
7065172 TAT
1 TAT
7065175 AAAGAAAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (24 bp):
TATTTTATTAATATTTTAATAAGA
Found at i:7067023 original size:46 final size:46
Alignment explanation
Indices: 7066971--7067290 Score: 401
Period size: 46 Copynumber: 7.0 Consensus size: 46
7066961 GCTCTCTGAA
** * *
7066971 ATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
7067017 ATGAAAT-ATGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGA-ATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
7067063 ATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
7067109 GGGAAATGAATAAGACCATGGTTGAAAGACACCATAGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
7067155 ATGAAATAAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
7067201 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* ** * * *
7067247 A-GAAAATGAGTAAGACCACAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
7067291 TTAAAGATAA
Statistics
Matches: 237, Mismatches: 34, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.00
46 235 0.99
47 1 0.00
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:7067221 original size:138 final size:138
Alignment explanation
Indices: 7066981--7067278 Score: 452
Period size: 138 Copynumber: 2.2 Consensus size: 138
7066971 ATGAAATGTG
* * * **
7066981 TAAGACCATGGTTGAAAGATACCACGGCAACATGATATGAAATATGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGACACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
* * **
7067046 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAGAGATACCATGGCAACATGATGG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
*
7067111 GAAATGAA
131 AAAATGAA
* * *
7067119 TAAGACCATGGTTGAAAGACACCATAGCAGCGTGACATGAAATAAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGACACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
7067184 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
66 TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
*
7067249 AAAATGAG
131 AAAATGAA
**
7067257 TAAGACCACAGTTGAAAGACAC
1 TAAGACCATGGTTGAAAGACAC
7067279 TATGGCATCA
Statistics
Matches: 144, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
138 144 1.00
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGACACCACAGCAACATGACATGAAATAAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATAGCAACATGACAG
AAAATGAA
Found at i:7073330 original size:18 final size:20
Alignment explanation
Indices: 7073302--7073338 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7073292 GTAATTTTTT
7073302 AAATCAAATATT-AATATTG
1 AAATCAAATATTAAATATTG
7073321 AAAT-AAATATTAAATATT
1 AAATCAAATATTAAATATT
7073339 AATATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.38
Consensus pattern (20 bp):
AAATCAAATATTAAATATTG
Found at i:7074388 original size:21 final size:21
Alignment explanation
Indices: 7074364--7074409 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
7074354 AAGTCTTTAA
7074364 ACTTGAACAGAAAATCTCAAG
1 ACTTGAACAGAAAATCTCAAG
* * * *
7074385 ACTTGGAGAGAAAGTCTCAAT
1 ACTTGAACAGAAAATCTCAAG
7074406 ACTT
1 ACTT
7074410 AGCTCCTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (21 bp):
ACTTGAACAGAAAATCTCAAG
Found at i:7075625 original size:21 final size:22
Alignment explanation
Indices: 7075601--7075642 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7075591 CATGATCTAT
7075601 ATAAATGAATTA-TAAAATATG
1 ATAAATGAATTATTAAAATATG
*
7075622 ATAATTGAATTATTAAAATAT
1 ATAAATGAATTATTAAAATAT
7075643 TAAACATTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (22 bp):
ATAAATGAATTATTAAAATATG
Found at i:7076458 original size:20 final size:19
Alignment explanation
Indices: 7076428--7076465 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7076418 TAATATTTTT
*
7076428 TAATAATAATAATTATATC
1 TAATAATAATAAATATATC
7076447 TAATATATAATAAATATAT
1 TAATA-ATAATAAATATAT
7076466 TTAAACTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATAATAATAAATATATC
Found at i:7083793 original size:18 final size:18
Alignment explanation
Indices: 7083755--7083793 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7083745 TTTATTTTAA
*
7083755 TATTATATTAAAAACTTT
1 TATTATATTAAAAACTGT
7083773 TATTATTATTAAAAA-TGT
1 TATTA-TATTAAAAACTGT
7083791 TAT
1 TAT
7083794 GTGTCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (18 bp):
TATTATATTAAAAACTGT
Found at i:7097652 original size:9 final size:9
Alignment explanation
Indices: 7097638--7097662 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7097628 TTAAAAAATA
7097638 ACAAATTTT
1 ACAAATTTT
7097647 ACAAATTTT
1 ACAAATTTT
7097656 ACAAATT
1 ACAAATT
7097663 AGTCCTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (9 bp):
ACAAATTTT
Found at i:7098710 original size:7 final size:8
Alignment explanation
Indices: 7098673--7098711 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
7098663 AAATATTTTA
7098673 AAAAATTAT
1 AAAAA-TAT
7098682 AAAAATATT
1 AAAAATA-T
*
7098691 CAAAATAT
1 AAAAATAT
7098699 AAAAATAT
1 AAAAATAT
7098707 AAAAA
1 AAAAA
7098712 GTTAATAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 15 0.56
9 12 0.44
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (8 bp):
AAAAATAT
Found at i:7104670 original size:21 final size:21
Alignment explanation
Indices: 7104644--7104693 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7104634 TAAAATATAG
7104644 TTACTATAG-AGATGAGATTAA
1 TTACTATAGCA-ATGAGATTAA
*
7104665 TTACTACAGCAATGAGATTAA
1 TTACTATAGCAATGAGATTAA
*
7104686 GTACTATA
1 TTACTATA
7104694 ATGGTGAGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (21 bp):
TTACTATAGCAATGAGATTAA
Found at i:7108173 original size:51 final size:50
Alignment explanation
Indices: 7108111--7108270 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
7108101 CTGATCACAT
7108111 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
7108162 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
7108212 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
7108263 TTGTCACT
1 TTATCACT
7108271 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:7115966 original size:51 final size:50
Alignment explanation
Indices: 7115904--7116063 Score: 248
Period size: 51 Copynumber: 3.2 Consensus size: 50
7115894 CTGATCACAT
7115904 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
* *
7115955 TTATCACTTGTCACTGATCAGATAAGAGTAGCTAAGCTACCACTTATCAT
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
* * *
7116005 TTGTCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCT-AAGCTACCACTTATCAC
*
7116056 TTGTCACT
1 TTATCACT
7116064 GATCAGAAGT
Statistics
Matches: 101, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
50 46 0.46
51 55 0.54
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (50 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAGCTACCACTTATCAC
Found at i:7121992 original size:59 final size:58
Alignment explanation
Indices: 7121894--7122018 Score: 133
Period size: 59 Copynumber: 2.1 Consensus size: 58
7121884 GCCAGAACTT
* ** * * * * *
7121894 TTTTTTTTGTCCAAGTTAGGCTTTGAACTTGGTATTTGTTATCACATTGAGACTTGAAC
1 TTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTG-GACCTAAAC
* * * *
7121953 TTTTTTTTATCCAAGTTAGGCCCTGAATTTTGCAATTGTTCCCACATTGGGCCTAAAC
1 TTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTGGACCTAAAC
7122011 TTTTTTTT
1 TTTTTTTT
7122019 CCCAAGATAG
Statistics
Matches: 54, Mismatches: 12, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
58 14 0.26
59 40 0.74
ACGTcount: A:0.21, C:0.17, G:0.16, T:0.46
Consensus pattern (58 bp):
TTTTTTTTATCCAAGTTAGGCCCTGAACTTGGCAATTGTTACCACATTGGACCTAAAC
Found at i:7126426 original size:39 final size:39
Alignment explanation
Indices: 7126383--7126463 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
7126373 ATGCTTTTAA
7126383 ACAAATAACAGATATACATGTGGCAGTATAGTCATACAT
1 ACAAATAACAGATATACATGTGGCAGTATAGTCATACAT
7126422 ACAAATAACAGATATACATGTGGCAGTATAGTCATACAT
1 ACAAATAACAGATATACATGTGGCAGTATAGTCATACAT
7126461 ACA
1 ACA
7126464 TTTAGTATAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (39 bp):
ACAAATAACAGATATACATGTGGCAGTATAGTCATACAT
Found at i:7130941 original size:19 final size:18
Alignment explanation
Indices: 7130906--7130950 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
7130896 AGCGAAAAGC
7130906 AGGGAAAAAAAGAAAGAA
1 AGGGAAAAAAAGAAAGAA
7130924 AGGAGAAAAGAAAG-AAGAA
1 AGG-GAAAA-AAAGAAAGAA
7130943 AGGGAAAA
1 AGGGAAAA
7130951 TTGAAAGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 13 0.52
20 4 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AGGGAAAAAAAGAAAGAA
Found at i:7132291 original size:21 final size:19
Alignment explanation
Indices: 7132252--7132291 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
7132242 TGAACATGTG
*
7132252 TTTATTGTGAAATTGAATA
1 TTTATTGTGAAAGTGAATA
7132271 TTTATTAGTGAAAAGTGAATA
1 TTTATT-GTG-AAAGTGAATA
7132292 GAATTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
TTTATTGTGAAAGTGAATA
Found at i:7132495 original size:12 final size:12
Alignment explanation
Indices: 7132478--7132502 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7132468 GCCGACTACT
7132478 GTTACTGTTACC
1 GTTACTGTTACC
7132490 GTTACTGTTACC
1 GTTACTGTTACC
7132502 G
1 G
7132503 ATTCGGCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (12 bp):
GTTACTGTTACC
Found at i:7133008 original size:36 final size:36
Alignment explanation
Indices: 7132718--7133013 Score: 181
Period size: 36 Copynumber: 8.0 Consensus size: 36
7132708 AAAGGTATAA
* * * *
7132718 AATAACTGATTATTACTGAATAATTTACTGTTACCG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * * * *
7132754 GATAATTGACTGTTACTGGAT-ATTAGACTGTTA-TG
1 AATAACTGATTGTTACTGAATAATT-GATTGTTACTG
* * **
7132789 AAATAACTGAATATTACTGAATAATTGATCATTACTG
1 -AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * *
7132826 AATAACTGATTGTCACTGAATGAA-TGACTGCTACTG
1 AATAACTGATTGTTACTGAAT-AATTGATTGTTACTG
*
7132862 AATAACTTAATTGTTACTGAAT-ATCTGATT-TTACTG
1 AATAAC-TGATTGTTACTGAATAAT-TGATTGTTACTG
* * * *
7132898 AATAATTGACTGTTACTGGATAACCAATTAATTGATCGATACTG
1 AATAACTGATTGTTACT-G------AA-TAATTGATTGTTACTG
* * * *
7132942 AATAACTGGTTATTATTGAATAATTGATTGTTACCG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
* * *
7132978 AATAACTGACTGTTACTGAATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTGAATAATTGATTGTTACTG
7133013 A
1 A
7133014 GAGTTAATGA
Statistics
Matches: 196, Mismatches: 46, Indels: 37
0.70 0.16 0.13
Matches are distributed among these distances:
35 17 0.09
36 126 0.64
37 26 0.13
42 2 0.01
43 6 0.03
44 19 0.10
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (36 bp):
AATAACTGATTGTTACTGAATAATTGATTGTTACTG
Found at i:7133009 original size:18 final size:18
Alignment explanation
Indices: 7132718--7133013 Score: 152
Period size: 18 Copynumber: 16.1 Consensus size: 18
7132708 AAAGGTATAA
*
7132718 AATAACTGATTATTACTG
1 AATAACTGATTGTTACTG
* * * *
7132736 AATAATTTACTGTTACCG
1 AATAACTGATTGTTACTG
* * *
7132754 GATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* * *
7132772 GAT-ATTAGACTGTTA-TG
1 AATAACT-GATTGTTACTG
* *
7132789 AAATAACTGAATATTACTG
1 -AATAACTGATTGTTACTG
* **
7132808 AATAATTGATCATTACTG
1 AATAACTGATTGTTACTG
*
7132826 AATAACTGATTGTCACTG
1 AATAACTGATTGTTACTG
* *
7132844 AATGAA-TGACTGCTACTG
1 AAT-AACTGATTGTTACTG
*
7132862 AATAACTTAATTGTTACTG
1 AATAAC-TGATTGTTACTG
*
7132881 AATATCTGATT-TTACTG
1 AATAACTGATTGTTACTG
* *
7132898 AATAATTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
7132916 GATAACCAATTAATTGATCGATACTG
1 AATAA-C---TGATTG-T---TACTG
* * *
7132942 AATAACTGGTTATTATTG
1 AATAACTGATTGTTACTG
* *
7132960 AATAATTGATTGTTACCG
1 AATAACTGATTGTTACTG
*
7132978 AATAACTGACTGTTACTG
1 AATAACTGATTGTTACTG
* *
7132996 AATAAATAATTGTT-CTG
1 AATAACTGATTGTTACTG
7133013 A
1 A
7133014 GAGTTAATGA
Statistics
Matches: 212, Mismatches: 50, Indels: 33
0.72 0.17 0.11
Matches are distributed among these distances:
17 25 0.12
18 148 0.70
19 20 0.09
21 1 0.00
22 7 0.03
23 1 0.00
25 1 0.00
26 9 0.04
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
AATAACTGATTGTTACTG
Found at i:7133925 original size:16 final size:17
Alignment explanation
Indices: 7133904--7133938 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
7133894 AATTAATTTA
*
7133904 AATTAATTAATTTT-TC
1 AATTAAATAATTTTCTC
7133920 AATTAAATAATTTTCTC
1 AATTAAATAATTTTCTC
7133937 AA
1 AA
7133939 CACAATTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAAATAATTTTCTC
Found at i:7137980 original size:15 final size:14
Alignment explanation
Indices: 7137960--7137989 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
7137950 TGGGTGGCTC
7137960 TCTTTTTTCTTTTTT
1 TCTTTTTT-TTTTTT
7137975 TCTTTTTTTTTTTT
1 TCTTTTTTTTTTTT
7137989 T
1 T
7137990 ATGATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TCTTTTTTTTTTTT
Found at i:7142486 original size:24 final size:24
Alignment explanation
Indices: 7142455--7142527 Score: 92
Period size: 24 Copynumber: 3.0 Consensus size: 24
7142445 CTGAAAAATT
7142455 GAACAGTAAGCTCATACGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
* *
7142479 GAACAGTAAGCTCTTATGAGCTGA
1 GAACAGTAAGCTCATACGAGCTGA
* *
7142503 TATATCGGTAAGCTCATACGAGCTG
1 GA-A-CAGTAAGCTCATACGAGCTG
7142528 TGGTGAATCC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
24 23 0.56
25 1 0.02
26 17 0.41
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (24 bp):
GAACAGTAAGCTCATACGAGCTGA
Found at i:7155551 original size:21 final size:20
Alignment explanation
Indices: 7155517--7155555 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7155507 TTTTAAACAT
*
7155517 AAATTTTAAAATTATAAAAA
1 AAATTTAAAAATTATAAAAA
7155537 AAATTTAAAACATTATAAA
1 AAATTTAAAA-ATTATAAA
7155556 TATTATTAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AAATTTAAAAATTATAAAAA
Found at i:7156411 original size:96 final size:96
Alignment explanation
Indices: 7156247--7156435 Score: 360
Period size: 96 Copynumber: 2.0 Consensus size: 96
7156237 ACTAGTCTAT
*
7156247 ACATATGATATATTCTCTAGTATATACCACTAAGATTGACTATACAAATAAGCAAATTTCATACT
1 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
7156312 CTTTAAGCCTTGTCAGCAATGATATGATAAC
66 CTTTAAGCCTTGTCAGCAATGATATGATAAC
7156343 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
1 ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
*
7156408 CTTTAAGCCTTGTTAGCAATGATATGAT
66 CTTTAAGCCTTGTCAGCAATGATATGAT
7156436 TTTAAAAAGG
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (96 bp):
ACATATGATATATTCTCTAGTATATACCACTAAGATTAACTATACAAATAAGCAAATTTCATACT
CTTTAAGCCTTGTCAGCAATGATATGATAAC
Found at i:7159734 original size:64 final size:64
Alignment explanation
Indices: 7159633--7159760 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
7159623 CTGTTAGAAG
* *
7159633 TTAGAACAAAGGATGTCCTACATTAATTATTTGCAATCCGGATATATCCTTAACCAGAGATGGC
1 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
* * *
7159697 TTAGAACAAAGCATGTCCTAGATTAATTATTTGCAATCCGGATATATCCTCAACTAGATATGGC
1 TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
7159761 CAATTCATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (64 bp):
TTAGAACAAAGCATGTCCTACATTAATTATTTGCAATCCGGATATATCCTCAACCAGAGATGGC
Found at i:7161012 original size:16 final size:16
Alignment explanation
Indices: 7160991--7161022 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7160981 ATTAAGAATG
7160991 TTATTAAATTATATTT
1 TTATTAAATTATATTT
7161007 TTATTAAATTATATTT
1 TTATTAAATTATATTT
7161023 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTAAATTATATTT
Found at i:7161050 original size:26 final size:25
Alignment explanation
Indices: 7160968--7161050 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 25
7160958 TTAATTCATA
*
7160968 TAATAATAATTATATTAAGAATGTTAT
1 TAATAATAATTATATTAA-AAT-ATAT
* * * *
7160995 TAAATTATATTTTTATTAAATTATATT
1 T-AATAATAATTATATTAAAATATA-T
*
7161022 TAATAATAATTATGTTAAAATATGAT
1 TAATAATAATTATATTAAAATAT-AT
7161048 TAA
1 TAA
7161051 ATTATTTATT
Statistics
Matches: 43, Mismatches: 10, Indels: 7
0.72 0.17 0.12
Matches are distributed among these distances:
26 23 0.53
27 6 0.14
28 14 0.33
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (25 bp):
TAATAATAATTATATTAAAATATAT
Found at i:7161303 original size:32 final size:33
Alignment explanation
Indices: 7161266--7161336 Score: 119
Period size: 32 Copynumber: 2.2 Consensus size: 33
7161256 TTGAATTACT
*
7161266 AATTACAACTCTATTCAATTACAGCTCTA-TTC
1 AATTACAACTCTATTCAATTACAGCCCTATTTC
7161298 AATTACAACTCTATTCAATTACAGCCCTATTTC
1 AATTACAACTCTATTCAATTACAGCCCTATTTC
7161331 -ATTACA
1 AATTACA
7161337 GTGAACCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
32 34 0.92
33 3 0.08
ACGTcount: A:0.35, C:0.25, G:0.03, T:0.37
Consensus pattern (33 bp):
AATTACAACTCTATTCAATTACAGCCCTATTTC
Found at i:7161327 original size:16 final size:16
Alignment explanation
Indices: 7161266--7161337 Score: 101
Period size: 16 Copynumber: 4.5 Consensus size: 16
7161256 TTGAATTACT
*
7161266 AATTACAACTCTATTC
1 AATTACAGCTCTATTC
7161282 AATTACAGCTCTATTC
1 AATTACAGCTCTATTC
*
7161298 AATTACAACTCTATTC
1 AATTACAGCTCTATTC
*
7161314 AATTACAGCCCTATTTC
1 AATTACAGCTCTA-TTC
7161331 -ATTACAG
1 AATTACAG
7161338 TGAACCAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 48 0.94
17 3 0.06
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (16 bp):
AATTACAGCTCTATTC
Found at i:7164064 original size:49 final size:49
Alignment explanation
Indices: 7164007--7164154 Score: 233
Period size: 49 Copynumber: 3.0 Consensus size: 49
7163997 GTTTGTGTAT
*
7164007 TCATAACAATTTGGTACCAAAGCCAATCGCAATAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
*
7164056 TCATAACAATTTGGTACCAAAGCCCATCACAATAGGCAATGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
* * * * *
7164105 TCATAACAATTTCGTACCAAAGCCTACCACAACAGGCAACGATGTACTA
1 TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
7164154 T
1 T
7164155 GTTGTTACAA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 92 1.00
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24
Consensus pattern (49 bp):
TCATAACAATTTGGTACCAAAGCCAATCACAATAGGCAATGATGTACTA
Found at i:7166991 original size:21 final size:21
Alignment explanation
Indices: 7166965--7167005 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7166955 ATATGGTTCT
7166965 TTTCTTT-TTTTTTTCTTTTTC
1 TTTCTTTCTTTTTTT-TTTTTC
7166986 TTTCTTTCTTTTTTTTTTTT
1 TTTCTTTCTTTTTTTTTTTT
7167006 AAGTTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (21 bp):
TTTCTTTCTTTTTTTTTTTTC
Found at i:7188564 original size:28 final size:28
Alignment explanation
Indices: 7188530--7188587 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
7188520 ATTAAATAAA
*
7188530 ATTATTTTCCAATTATTTAAATATTATC
1 ATTATTTTCAAATTATTTAAATATTATC
*
7188558 ATTATTTTTAAATTATTTAAATATTATC
1 ATTATTTTCAAATTATTTAAATATTATC
7188586 AT
1 AT
7188588 AATTATTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (28 bp):
ATTATTTTCAAATTATTTAAATATTATC
Done.