Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 230 of 295
Found at i:73615048 original size:86 final size:86
Alignment explanation
Indices: 73614948--73615206 Score: 301
Period size: 87 Copynumber: 3.0 Consensus size: 86
73614938 AAATAAATTC
* ** *
73614948 ATTTTATTCCATTTTTTATTTTGTTTCCAAACGAGTATTAAAATTAAATAAAATCTGTTTTGGGA
1 ATTTTATTCTATTTTTTATTTTGTTTCCAAATAAGAATTAAAATTAAATAAAATCTGTTTTGGGA
*
73615013 TTTATTCCCACCGTTCAACAG
66 TTTATTCCCGCCGTTCAACAG
* * ***
73615034 ATTTTATTTTATTTTTTATTTTGATGAGAAATAAGAAATTAAAATTAAATAAAATCTGTTTTGGG
1 ATTTTATTCTATTTTTTATTTTGTTTCCAAATAAG-AATTAAAATTAAATAAAATCTGTTTTGGG
* *
73615099 ATTTATTCCCGTCGTTGAACAG
65 ATTTATTCCCGCCGTTCAACAG
* * * * * *
73615121 ATTTTATTCGA-TTTTAATTTTGTTTCCAAATTAGAATT-AAATTGAAT--AATCTATTTCGGGA
1 ATTTTATTCTATTTTTTATTTTGTTTCCAAATAAGAATTAAAATTAAATAAAATCTGTTTTGGGA
* *
73615182 TTTATTCCCGCCGTTTAACAT
66 TTTATTCCCGCCGTTCAACAG
73615203 ATTT
1 ATTT
73615207 ATTTTGATTT
Statistics
Matches: 146, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
82 34 0.23
84 8 0.05
85 4 0.03
86 44 0.30
87 56 0.38
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.46
Consensus pattern (86 bp):
ATTTTATTCTATTTTTTATTTTGTTTCCAAATAAGAATTAAAATTAAATAAAATCTGTTTTGGGA
TTTATTCCCGCCGTTCAACAG
Found at i:73619198 original size:26 final size:28
Alignment explanation
Indices: 73619151--73619208 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 28
73619141 GATATTTTAA
73619151 ATATAAATTATTTAATTCATTT-TATTTT
1 ATATAAATTATTTAATTCATTTATA-TTT
* *
73619179 ATATAAA-TATTT-GTTTATTTATATTT
1 ATATAAATTATTTAATTCATTTATATTT
73619205 ATAT
1 ATAT
73619209 TTGTTCACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 13 0.48
27 7 0.26
28 7 0.26
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (28 bp):
ATATAAATTATTTAATTCATTTATATTT
Found at i:73619201 original size:20 final size:21
Alignment explanation
Indices: 73619171--73619213 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
73619161 TTTAATTCAT
73619171 TTTATTTTATATAAATATTTG
1 TTTATTTTATATAAATATTTG
**
73619192 TTTA-TTTATATTTATATTTG
1 TTTATTTTATATAAATATTTG
73619212 TT
1 TT
73619214 CACTAATGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
TTTATTTTATATAAATATTTG
Found at i:73619525 original size:20 final size:20
Alignment explanation
Indices: 73619502--73619845 Score: 222
Period size: 20 Copynumber: 17.1 Consensus size: 20
73619492 ACCCTTCAAC
*
73619502 AATTTTGAATCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
*
73619522 AATTTTAAATCGAGT-AAAA
1 AATTTTAAATCAAGTGAAAA
*
73619541 CCATTTTAAATCAAGTGAAAA
1 -AATTTTAAATCAAGTGAAAA
* *
73619562 ACATTTTAAATCAAGTGACAC
1 A-ATTTTAAATCAAGTGAAAA
* *
73619583 AGTTTTAAATCAAGGGAAAA
1 AATTTTAAATCAAGTGAAAA
** * * *
73619603 TTTTTTAATTCGAGTGAAAT
1 AATTTTAAATCAAGTGAAAA
*
73619623 AGTTTTAAATCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
* * *
73619643 ACTTTTAAATCGAGTGAAAT
1 AATTTTAAATCAAGTGAAAA
** * *
73619663 TTTTTTGACTCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
* ** * *
73619683 TCATTTTAAATTGAGTTAAAT
1 -AATTTTAAATCAAGTGAAAA
* *
73619704 AGTTTTAAATCAAGTGCAAA
1 AATTTTAAATCAAGTGAAAA
** *
73619724 TTTTTTAAATCAAGTGAAAC
1 AATTTTAAATCAAGTGAAAA
*
73619744 AATTTTAAATCAGGTGAAAA
1 AATTTTAAATCAAGTGAAAA
** * **
73619764 TTTTTTGACCCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
* * **
73619784 TGATTTTAAATCGAGTGAATT
1 -AATTTTAAATCAAGTGAAAA
** * *
73619805 TTTTTTGACTCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
** *
73619825 ACGTTTAACTCAAGTGAAAA
1 AATTTTAAATCAAGTGAAAA
73619845 A
1 A
73619846 CTGCTCCCTA
Statistics
Matches: 240, Mismatches: 79, Indels: 10
0.73 0.24 0.03
Matches are distributed among these distances:
19 4 0.02
20 190 0.79
21 46 0.19
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (20 bp):
AATTTTAAATCAAGTGAAAA
Found at i:73619644 original size:81 final size:80
Alignment explanation
Indices: 73619499--73619769 Score: 287
Period size: 81 Copynumber: 3.4 Consensus size: 80
73619489 TAAACCCTTC
* * ** * *
73619499 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAAAACCA-TTTTAAATCAAGTGAAAAA
1 AACAATTTTAAATCAAGGGAAAATTTTTTAATTCGAGTAAAA-TAGTTTTAAATCAAGTGAAAAA
73619563 CATTTTAAATCAAGTGA
65 C-TTTTAAATCAAGTGA
* * *
73619580 CACAGTTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAAAC
1 AACAATTTTAAATCAAGGGAAAATTTTTTAATTCGAGTAAAATAGTTTTAAATCAAGTGAAAAAC
*
73619645 TTTTAAATCGAGTGA
66 TTTTAAATCAAGTGA
*** * * * * * *
73619660 AATTTTTTTGACTCAAGTGAAAATCATTTTAAATT-GAGTTAAATAGTTTTAAATCAAGTGCAAA
1 AACAATTTTAAATCAAGGGAAAAT--TTTTTAATTCGAGTAAAATAGTTTTAAATCAAGTGAAAA
**
73619724 TTTTTTAAATCAAGTGA
64 ACTTTTAAATCAAGTGA
73619741 AACAATTTTAAATC-AGGTGAAAATTTTTT
1 AACAATTTTAAATCAAGG-GAAAATTTTTT
73619770 GACCCAAGTG
Statistics
Matches: 156, Mismatches: 30, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
79 4 0.03
80 34 0.22
81 110 0.71
82 8 0.05
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.35
Consensus pattern (80 bp):
AACAATTTTAAATCAAGGGAAAATTTTTTAATTCGAGTAAAATAGTTTTAAATCAAGTGAAAAAC
TTTTAAATCAAGTGA
Found at i:73619690 original size:101 final size:101
Alignment explanation
Indices: 73619504--73619847 Score: 290
Period size: 101 Copynumber: 3.4 Consensus size: 101
73619494 CCTTCAACAA
* * * * * * **
73619504 TTTTGAATCAAGTGAAAAAATTTTAAATCGAGT-AAAACCATTTTAAATCAAGTGAAAAACATTT
1 TTTTAAATCAAGTGAAATAGTTTTAAATCAAGTGAAAAAC-TTTTAAATCAGGTG-AAAATTTTT
* ** * *
73619568 TAAATCAAGTG-ACA-CAGTTTTAAATCAAGGGAAAATT
64 TGACCCAAGTGAAAATCA-TTTTAAATCGAGGGAAAATT
* * *
73619605 TTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAAACTTTTAAATC-GAGTGAAATTTTTTT
1 TTTTAAATCAAGTGAAATAGTTTTAAATCAAGTGAAAAACTTTTAAATCAG-GTGAAAATTTTTT
* * ** *
73619669 GACTCAAGTGAAAATCATTTTAAATTGA-GTTAAATAG
65 GACCCAAGTGAAAATCATTTTAAATCGAGGGAAAAT-T
*
73619706 TTTTAAATCAAGTGCAAAT-TTTTTAAATCAAGTGAAACAA-TTTTAAATCAGGTGAAAATTTTT
1 TTTTAAATCAAGTG-AAATAGTTTTAAATCAAGTGAAA-AACTTTTAAATCAGGTGAAAATTTTT
* * **
73619769 TGACCCAAGTGAAAATGATTTTAAATCGAGTGAATTTT
64 TGACCCAAGTGAAAATCATTTTAAATCGAGGGAAAATT
* * * *
73619807 TTTTGACTCAAGTGAAAAACG-TTTAACTCAAGTGAAAAACT
1 TTTTAAATCAAGTGAAATA-GTTTTAAATCAAGTGAAAAACT
73619848 GCTCCCTAAC
Statistics
Matches: 194, Mismatches: 37, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
100 25 0.13
101 153 0.79
102 16 0.08
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (101 bp):
TTTTAAATCAAGTGAAATAGTTTTAAATCAAGTGAAAAACTTTTAAATCAGGTGAAAATTTTTTG
ACCCAAGTGAAAATCATTTTAAATCGAGGGAAAATT
Found at i:73619765 original size:40 final size:40
Alignment explanation
Indices: 73619499--73619844 Score: 264
Period size: 40 Copynumber: 8.6 Consensus size: 40
73619489 TAAACCCTTC
* ** * *
73619499 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
* **
73619539 AACCATTTTAAATCAAGTGAAAAACATTTTAAATCAAGTGA
1 AACAATTTTAAATCAAGTG-AAAATTTTTTAAATCAAGTGA
* * * * *
73619580 CACAGTTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
* * ** *
73619620 AATAGTTTTAAATCAAGTGAAAAACTTTTAAATCGAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
*** * * * ** *
73619660 AATTTTTTTGACTCAAGTGAAAATCATTTTAAATTGAGTTA
1 AACAATTTTAAATCAAGTGAAAAT-TTTTTAAATCAAGTGA
* * *
73619701 AATAGTTTTAAATCAAGTGCAAATTTTTTAAATCAAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
* * **
73619741 AACAATTTTAAATCAGGTGAAAATTTTTTGACCCAAGTGA
1 AACAATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
* ** * *
73619781 AA-ATGATTTTAAATCGAGTGAATTTTTTTTGACTCAAGTGA
1 AACA--ATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
* *
73619822 AA-AACGTTTAACTCAAGTGAAAA
1 AACAA-TTTTAAATCAAGTGAAAA
73619845 ACTGCTCCCT
Statistics
Matches: 248, Mismatches: 53, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
39 2 0.01
40 147 0.59
41 99 0.40
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.34
Consensus pattern (40 bp):
AACAATTTTAAATCAAGTGAAAATTTTTTAAATCAAGTGA
Found at i:73619780 original size:121 final size:121
Alignment explanation
Indices: 73619499--73619782 Score: 307
Period size: 121 Copynumber: 2.3 Consensus size: 121
73619489 TAAACCCTTC
* * * * * *** * *
73619499 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAAAACCATTTTAAATCAAGTGAAAAAC
1 AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAATTTTTTTGACTCAAGTGAAAAAC
* * *
73619564 ATTTTAAATCAAGTGACACAGTTTTAAATCAAGGGAAAATTTTTTAATTCGAGTGA
66 ATTTTAAATCAAGTGAAACAGTTTTAAATCAAGGGAAAATTTTTTAAATCAAGTGA
* * * * *
73619620 AATAGTTTTAAATCAAGTGAAAAACTTTTAAATCGAGTGAAATTTTTTTGACTCAAGTGAAAATC
1 AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAATTTTTTTGACTCAAGTGAAAAAC
** * * * *
73619685 ATTTTAAATTGAGTTAAATAGTTTTAAATCAAGTGCAAATTTTTTAAATCAAGTGA
66 ATTTTAAATCAAGTGAAACAGTTTTAAATCAAGGGAAAATTTTTTAAATCAAGTGA
* ** * *
73619741 AACAATTTTAAATCAGGTGAAAATTTTTTGACCCAAGTGAAA
1 AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAA
73619783 ATGATTTTAA
Statistics
Matches: 134, Mismatches: 29, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
121 134 1.00
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.34
Consensus pattern (121 bp):
AACAATTTTAAATCAAGTGAAAAACTTTTAAACCAAGTGAAATTTTTTTGACTCAAGTGAAAAAC
ATTTTAAATCAAGTGAAACAGTTTTAAATCAAGGGAAAATTTTTTAAATCAAGTGA
Found at i:73619791 original size:81 final size:80
Alignment explanation
Indices: 73619499--73619823 Score: 278
Period size: 81 Copynumber: 4.0 Consensus size: 80
73619489 TAAACCCTTC
* * ** * *
73619499 AACAATTTTGAATCAAGTGAAAAAATTTTAAATCGAGTAAAACCA-TTTTAAATCAAGTGAAAAA
1 AACAATTTTAAATCAGGTGAAAATTTTTTAAATCGAGTGAAA-TAGTTTTAAATCAAGTG-AAAA
**
73619563 CATTTTAAATCAAGTGA
64 TTTTTTAAATCAAGTGA
* * * *
73619580 CACAGTTTTAAATCAAGG-GAAAATTTTTTAATTCGAGTGAAATAGTTTTAAATCAAGTGAAAAA
1 AACAATTTTAAATC-AGGTGAAAATTTTTTAAATCGAGTGAAATAGTTTTAAATCAAGTGAAAAT
* *
73619644 CTTTTAAATCGAGTGA
65 TTTTTAAATCAAGTGA
*** * * * * * * *
73619660 AATTTTTTTGACTCAAGTGAAAATCATTTTAAATTGAGTTAAATAGTTTTAAATCAAGTGCAAAT
1 AACAATTTTAAATCAGGTGAAAAT-TTTTTAAATCGAGTGAAATAGTTTTAAATCAAGTGAAAAT
73619725 TTTTTAAATCAAGTGA
65 TTTTTAAATCAAGTGA
* ** * * **
73619741 AACAATTTTAAATCAGGTGAAAATTTTTTGACCCAAGTGAAA-ATGATTTTAAATCGAGTGAATT
1 AACAATTTTAAATCAGGTGAAAATTTTTTAAATCGAGTGAAATA-G-TTTTAAATCAAGTGAAAA
* *
73619805 TTTTTTGACTCAAGTGA
64 TTTTTTAAATCAAGTGA
73619822 AA
1 AA
73619824 AACGTTTAAC
Statistics
Matches: 192, Mismatches: 46, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
79 3 0.02
80 45 0.23
81 142 0.74
82 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (80 bp):
AACAATTTTAAATCAGGTGAAAATTTTTTAAATCGAGTGAAATAGTTTTAAATCAAGTGAAAATT
TTTTAAATCAAGTGA
Found at i:73620103 original size:112 final size:111
Alignment explanation
Indices: 73619905--73620120 Score: 238
Period size: 112 Copynumber: 1.9 Consensus size: 111
73619895 ATGCCATTCT
* * * * * *
73619905 GACTTCAAAGGAATTTGATCAAACACATTTTTATCGATAGTTTGTAAAAAGTATCGATACCTTAA
1 GACTTCAAAGGAATTTGAGCAAACACATTTTTATCAATACTTTGCAAAAAGCATCAATACCTTAA
* * **
73619970 GAAAAATCATTGGTACCTTTTTCAGTATTGATACGAAAATAACTTAA
66 GAAAAATCATCGATACCTTTTT-AGTATCAATACGAAAATAACTTAA
* **
73620017 GACTTCGAAGGAATTTGAGCAAACATGTTTTTATCAATACTTTGCAAAAAGCATCAATACC-TAC
1 GACTTCAAAGGAATTTGAGCAAACACATTTTTATCAATACTTTGCAAAAAGCATCAATACCTTA-
* * * *
73620081 A-AAATATTATCGATACATTTTTTGGTATCAATACGAAAAT
65 AGAAAAATCATCGATAC-CTTTTTAGTATCAATACGAAAAT
73620121 GACATTCAAC
Statistics
Matches: 85, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
111 27 0.32
112 58 0.68
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.33
Consensus pattern (111 bp):
GACTTCAAAGGAATTTGAGCAAACACATTTTTATCAATACTTTGCAAAAAGCATCAATACCTTAA
GAAAAATCATCGATACCTTTTTAGTATCAATACGAAAATAACTTAA
Found at i:73623584 original size:17 final size:17
Alignment explanation
Indices: 73623564--73623646 Score: 51
Period size: 18 Copynumber: 4.6 Consensus size: 17
73623554 AGTAGAAGAG
*
73623564 AAGAGAAGAAAA-AAGAA
1 AAGAAAAGAAAAGAA-AA
73623581 AAGAAAAGAAAAGAAAA
1 AAGAAAAGAAAAGAAAA
***
73623598 AAGGATAAAGATGGGAAAAA
1 AA-GA-AAAGAAAAG-AAAA
* *
73623618 AAGAAAATAAAGGAAATA
1 AAGAAAAGAAAAGAAA-A
*
73623636 AAGAAAGGAAA
1 AAGAAAAGAAA
73623647 CTAGAAAGAA
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
17 18 0.35
18 20 0.38
19 8 0.15
20 6 0.12
ACGTcount: A:0.72, C:0.00, G:0.23, T:0.05
Consensus pattern (17 bp):
AAGAAAAGAAAAGAAAA
Found at i:73623584 original size:22 final size:22
Alignment explanation
Indices: 73623559--73623600 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
73623549 GGGTTAGTAG
* *
73623559 AAGAGAAGAGAAGAAAAAAGAA
1 AAGAAAAGAAAAGAAAAAAGAA
73623581 AAGAAAAGAAAAGAAAAAAG
1 AAGAAAAGAAAAGAAAAAAG
73623601 GATAAAGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (22 bp):
AAGAAAAGAAAAGAAAAAAGAA
Found at i:73623632 original size:18 final size:18
Alignment explanation
Indices: 73623579--73623646 Score: 64
Period size: 18 Copynumber: 3.7 Consensus size: 18
73623569 AAGAAAAAAG
*
73623579 AAAAGAAAAGAAAAGAAA
1 AAAAGAAAAGAAAGGAAA
* **
73623597 AAAGGATAAAGATGGGAAA
1 AAAAGA-AAAGAAAGGAAA
*
73623616 AAAAGAAAATAAAGGAAA
1 AAAAGAAAAGAAAGGAAA
* *
73623634 TAAAGAAAGGAAA
1 AAAAGAAAAGAAA
73623647 CTAGAAAGAA
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
18 24 0.63
19 14 0.37
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (18 bp):
AAAAGAAAAGAAAGGAAA
Found at i:73627538 original size:26 final size:27
Alignment explanation
Indices: 73627487--73627538 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
73627477 TAAATTATCT
* *
73627487 TTGAGTTTTTCTTTTCAAGAATTTTTC
1 TTGAGTTTTTCTTTTAAAGAAGTTTTC
73627514 TTGAG-TTTTCTTTTAAA-AGAGTTTT
1 TTGAGTTTTTCTTTTAAAGA-AGTTTT
73627539 AATAATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 1 0.05
26 16 0.73
27 5 0.23
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTAAAGAAGTTTTC
Found at i:73630931 original size:24 final size:24
Alignment explanation
Indices: 73630849--73630939 Score: 83
Period size: 24 Copynumber: 3.8 Consensus size: 24
73630839 AAGAAATTTC
* **
73630849 AGCACTATGTGTGCGAGGTTATGC
1 AGCACTATGTGTGCGAGATTATAT
* * * * *
73630873 GGCACTATGTGTGCAAAAACTACAT
1 AGCACTATGTGTGC-GAGATTATAT
*
73630898 GGCACTATGTGTGCGAGATTATAT
1 AGCACTATGTGTGCGAGATTATAT
*
73630922 AGCACTATGTGTGTGAGA
1 AGCACTATGTGTGCGAGA
73630940 AAACACGACA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
24 35 0.67
25 17 0.33
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (24 bp):
AGCACTATGTGTGCGAGATTATAT
Found at i:73642317 original size:19 final size:19
Alignment explanation
Indices: 73642293--73642329 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
73642283 ATTCCAAAAA
**
73642293 TAATATTATTTTAATAGTT
1 TAATATTAAATTAATAGTT
73642312 TAATATTAAATTAATAGT
1 TAATATTAAATTAATAGT
73642330 ATTTTATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TAATATTAAATTAATAGTT
Found at i:73642327 original size:30 final size:30
Alignment explanation
Indices: 73642293--73642351 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
73642283 ATTCCAAAAA
* *
73642293 TAATATTATTTTAATAGTTTAATATTAAAT
1 TAATAGTATTTTAATAATTTAATATTAAAT
*
73642323 TAATAGTATTTTATTAATTTAATATTAAA
1 TAATAGTATTTTAATAATTTAATATTAAA
73642352 GTGATTATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (30 bp):
TAATAGTATTTTAATAATTTAATATTAAAT
Found at i:73642339 original size:25 final size:25
Alignment explanation
Indices: 73642311--73642373 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
73642301 TTTTAATAGT
*
73642311 TTAATATTAAATTAATAGT-ATTTTA
1 TTAATATTAAATTAA-AGTGATTATA
*
73642336 TTAAT-TTAATATTAAAGTGATTATC
1 TTAATATTAA-ATTAAAGTGATTATA
73642361 TTAATATTAAATT
1 TTAATATTAAATT
73642374 TAATTTAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 7 0.21
25 22 0.67
26 4 0.12
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.51
Consensus pattern (25 bp):
TTAATATTAAATTAAAGTGATTATA
Found at i:73642475 original size:59 final size:60
Alignment explanation
Indices: 73642360--73642476 Score: 155
Period size: 62 Copynumber: 1.9 Consensus size: 60
73642350 AAGTGATTAT
* * * * * *
73642360 CTTAATATTAAATTTAATTTAATTTTTATGTTGTACATAAATATTCTATTATTTTAATGAGA
1 CTTAATATTAAATTTAATCTAATATGTATCTTG-A-ATAAATATTATATTAATTTAATGAGA
73642422 CTTAATATTAAATTTAATCTAATATGTATCTTG-ATAAATATTATATTAATTTAAT
1 CTTAATATTAAATTTAATCTAATATGTATCTTGAATAAATATTATATTAATTTAAT
73642477 TTTAAAGTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
59 20 0.41
62 29 0.59
ACGTcount: A:0.39, C:0.05, G:0.05, T:0.50
Consensus pattern (60 bp):
CTTAATATTAAATTTAATCTAATATGTATCTTGAATAAATATTATATTAATTTAATGAGA
Found at i:73655540 original size:22 final size:22
Alignment explanation
Indices: 73655515--73655560 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
73655505 CATGAACAAG
73655515 TGGTATGCACATATTAAAACAT
1 TGGTATGCACATATTAAAACAT
73655537 TGGTATGCACATATTAAAACAT
1 TGGTATGCACATATTAAAACAT
73655559 TG
1 TG
73655561 TCAACCAGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (22 bp):
TGGTATGCACATATTAAAACAT
Found at i:73656072 original size:15 final size:15
Alignment explanation
Indices: 73656052--73656083 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
73656042 TATGAACTTT
73656052 ACACAACATACCTTG
1 ACACAACATACCTTG
73656067 ACACAACATACCTTG
1 ACACAACATACCTTG
73656082 AC
1 AC
73656084 TTTAAACTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.34, G:0.06, T:0.19
Consensus pattern (15 bp):
ACACAACATACCTTG
Found at i:73657253 original size:31 final size:31
Alignment explanation
Indices: 73657120--73657265 Score: 129
Period size: 31 Copynumber: 4.8 Consensus size: 31
73657110 TATGACGACC
* * * *
73657120 AACACCAATATATAGTACATGATAAGATATA
1 AACACCGATACATAGTACCTGATAATATATA
* *
73657151 AACACCGACACATAGTTCCTGATACA-ATATA
1 AACACCGATACATAGTACCTGATA-ATATATA
* * *
73657182 AACACCGATACAAAGTACCTAATAATATAGTC
1 AACACCGATACATAGTACCTGATAATATA-TA
*
73657214 ATCA--G-TACATAGTACCTGATAATATATA
1 AACACCGATACATAGTACCTGATAATATATA
* * *
73657242 ATCAGCGGTACATAGTACCTGATA
1 AACACCGATACATAGTACCTGATA
73657266 CTTTAAAACC
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
28 5 0.05
29 19 0.20
30 3 0.03
31 63 0.66
32 5 0.05
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.25
Consensus pattern (31 bp):
AACACCGATACATAGTACCTGATAATATATA
Found at i:73660388 original size:20 final size:20
Alignment explanation
Indices: 73660363--73660403 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
73660353 ATTTCTAAAC
*
73660363 TTCAAAATATACAATTAACA
1 TTCAAAAGATACAATTAACA
* *
73660383 TTCAAAAGCTTCAATTAACA
1 TTCAAAAGATACAATTAACA
73660403 T
1 T
73660404 CAATAAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (20 bp):
TTCAAAAGATACAATTAACA
Found at i:73660925 original size:46 final size:45
Alignment explanation
Indices: 73660875--73661013 Score: 104
Period size: 46 Copynumber: 3.0 Consensus size: 45
73660865 ATTGCCTCAC
73660875 TGTTTTGCTGCTGGTTGTTTTTAGTTTAAACTGCTAATTGTTGTAT
1 TGTTTTG-TGCTGGTTGTTTTTAGTTTAAACTGCTAATTGTTGTAT
* * * ** * * *
73660921 TGTTTCAGTACT-GTTATTTTCGGCTTAAAATTGCTGAA-TGTTAG-AA
1 TGTTT-TGTGCTGGTTGTTTTTAG-TTTAAACTGCT-AATTGTT-GTAT
* **
73660967 TGTTTTGTTGCTGATTGTTTTTAGTTTAAACTGCCGATTGTTGTAT
1 TGTTTTG-TGCTGGTTGTTTTTAGTTTAAACTGCTAATTGTTGTAT
73661013 T
1 T
73661014 ATTTCATTAC
Statistics
Matches: 66, Mismatches: 19, Indels: 16
0.65 0.19 0.16
Matches are distributed among these distances:
45 11 0.17
46 44 0.67
47 11 0.17
ACGTcount: A:0.19, C:0.09, G:0.21, T:0.51
Consensus pattern (45 bp):
TGTTTTGTGCTGGTTGTTTTTAGTTTAAACTGCTAATTGTTGTAT
Found at i:73660979 original size:92 final size:92
Alignment explanation
Indices: 73660875--73661079 Score: 304
Period size: 92 Copynumber: 2.2 Consensus size: 92
73660865 ATTGCCTCAC
* * *
73660875 TGTTTTGCTGCTGGTTGTTTTTAGTTTAAACTGCTAATTGTTGTATTGTTTCAGTACTGTTATTT
1 TGTTTTGCTGCTGATTGTTTTTAGTTTAAACTGCCAATTGTTGTATTATTTCAGTACTGTTATTT
*
73660940 TCGGCTTAAAATTGCTGAATGTTAGAA
66 TCGGCTTAAAATAGCTGAATGTTAGAA
* * *
73660967 TGTTTTGTTGCTGATTGTTTTTAGTTTAAACTGCCGATTGTTGTATTATTTCATTACTGTTATTT
1 TGTTTTGCTGCTGATTGTTTTTAGTTTAAACTGCCAATTGTTGTATTATTTCAGTACTGTTATTT
**
73661032 TCGGCTTAAAATAGCTGAATGTTAGGC
66 TCGGCTTAAAATAGCTGAATGTTAGAA
*
73661059 TGTTTTACTGCTG-TTAGTTTT
1 TGTTTTGCTGCTGATT-GTTTT
73661080 ACTGGAAACT
Statistics
Matches: 101, Mismatches: 11, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
91 2 0.02
92 99 0.98
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.50
Consensus pattern (92 bp):
TGTTTTGCTGCTGATTGTTTTTAGTTTAAACTGCCAATTGTTGTATTATTTCAGTACTGTTATTT
TCGGCTTAAAATAGCTGAATGTTAGAA
Found at i:73662358 original size:46 final size:46
Alignment explanation
Indices: 73662214--73662383 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 46
73662204 AGGTAGGATG
* * *
73662214 CCGATGCCATGTCCCGGACATGGTCTTACACTAG--CTCAACTC-GTA
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGTTCTCATCTCAATA
* * * * * *
73662259 GTCGATGCATGTCCTAGACATGTCTTACACTGGCTT-ACATCTCGAGA
1 -CCGATGCATGTCCCAGACATGTCTTACACTAG-TTCTCATCTCAATA
* *
73662306 CTGATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATA
1 CCGATGCATGTCCCAGACATGTCTTACACTAGTTCTCATCTCAATA
* *
73662352 CCGATGCCATGTCTCATACATGGTCTTACACT
1 CCGATG-CATGTCCCAGACAT-GTCTTACACT
73662384 GGCTCTCGTA
Statistics
Matches: 98, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
44 11 0.11
45 14 0.14
46 50 0.51
47 13 0.13
48 10 0.10
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGTTCTCATCTCAATA
Found at i:73662391 original size:48 final size:46
Alignment explanation
Indices: 73662261--73662434 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 46
73662251 AACTCGTAGT
* * *
73662261 CGATGCATGTCCTAGACATGTCTTACACTGGCT-TACATCTCGAGAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CGTCTCAAGAC
* * * *
73662307 TGATGCATGTCCCAGACATGTCTTACACTAGTTCTCGTCTCAATAC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAGAC
* * * ** *
73662353 CGATGCCATGTCTCATACATGGTCTTACACTGGCTCTCGTAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCGT-CTCAAGAC
** *
73662401 TAATGCATGTCCCAGACATGTCTTACACTAGCTC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTC
73662435 ACAATAACCC
Statistics
Matches: 102, Mismatches: 22, Indels: 8
0.77 0.17 0.06
Matches are distributed among these distances:
46 55 0.54
47 25 0.25
48 21 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.30
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTCTCGTCTCAAGAC
Found at i:73663824 original size:29 final size:29
Alignment explanation
Indices: 73663791--73663847 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
73663781 TCCACCTTGA
* *
73663791 CACGAATTCTTAACGAACAAGTTCTTCAT
1 CACGAACTCTCAACGAACAAGTTCTTCAT
73663820 CACGAACTCTCAACGAACAAGTTCTTCA
1 CACGAACTCTCAACGAACAAGTTCTTCA
73663848 CCCATTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (29 bp):
CACGAACTCTCAACGAACAAGTTCTTCAT
Found at i:73669064 original size:13 final size:13
Alignment explanation
Indices: 73669046--73669070 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73669036 TTTAAAAACA
73669046 TATGTTTTTATGT
1 TATGTTTTTATGT
73669059 TATGTTTTTATG
1 TATGTTTTTATG
73669071 GTATTGCTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (13 bp):
TATGTTTTTATGT
Found at i:73677143 original size:22 final size:22
Alignment explanation
Indices: 73677118--73677161 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
73677108 GTGTTGTGTA
73677118 ACTGTGAGGTCTGAGGTTCAAG
1 ACTGTGAGGTCTGAGGTTCAAG
73677140 ACTGTGAGGTCTGAGGTTCAAG
1 ACTGTGAGGTCTGAGGTTCAAG
73677162 TCTTGGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (22 bp):
ACTGTGAGGTCTGAGGTTCAAG
Found at i:73677530 original size:27 final size:27
Alignment explanation
Indices: 73677500--73677555 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
73677490 ATCTTATATT
*
73677500 TGTAAACTAGTATTACTGAAATACCCC
1 TGTAAACTAGAATTACTGAAATACCCC
*** *
73677527 TGTAGGGTAGAATTACTGAAATGCCCC
1 TGTAAACTAGAATTACTGAAATACCCC
73677554 TG
1 TG
73677556 GTTTATAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29
Consensus pattern (27 bp):
TGTAAACTAGAATTACTGAAATACCCC
Found at i:73677668 original size:27 final size:27
Alignment explanation
Indices: 73677511--73677668 Score: 147
Period size: 27 Copynumber: 5.9 Consensus size: 27
73677501 GTAAACTAGT
* ** *
73677511 ATTACTGAAATACCCCT-GTAGGGTAGA
1 ATTACCGAAATACCCCTGGTTTGG-AAA
* * **
73677538 ATTACTGAAATGCCCCTGGTTTATAAA
1 ATTACCGAAATACCCCTGGTTTGGAAA
* **
73677565 ATTACCGAAATGCCCCTGGTTTATAAA
1 ATTACCGAAATACCCCTGGTTTGGAAA
* *
73677592 ATTATCGAAATACCCCTGATTTGGAAA
1 ATTACCGAAATACCCCTGGTTTGGAAA
* *
73677619 GTTACCGAAATACCCTTGGTTTGGAAA
1 ATTACCGAAATACCCCTGGTTTGGAAA
* *
73677646 ATTATCGAAATACCCTTGGTTTG
1 ATTACCGAAATACCCCTGGTTTG
73677669 TAGATTTACC
Statistics
Matches: 112, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
27 110 0.98
28 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (27 bp):
ATTACCGAAATACCCCTGGTTTGGAAA
Found at i:73677973 original size:41 final size:41
Alignment explanation
Indices: 73677928--73678048 Score: 190
Period size: 41 Copynumber: 3.0 Consensus size: 41
73677918 GGAGGAAGAA
*
73677928 ATTGAGGATCGCATGGTTGCTTGACGACCATGGATCCA-TCG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACT-G
*
73677969 ATTGAGGATCGCATGGTTGCTTGACAACCGTGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
* *
73678010 ATTAAGGATCGCATGGTTGCTTGACGATCGTGGATCCAC
1 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCAC
73678049 CGGTGGCTTT
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
41 73 0.99
42 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACTG
Found at i:73681005 original size:27 final size:27
Alignment explanation
Indices: 73680975--73681066 Score: 159
Period size: 27 Copynumber: 3.4 Consensus size: 27
73680965 GTAGACTAGT
*
73680975 ATTACTAAAATACTCCTGTAGGGTAGA
1 ATTACTGAAATACTCCTGTAGGGTAGA
73681002 ATTACTGAAATACTCCTGTAGGGTAGA
1 ATTACTGAAATACTCCTGTAGGGTAGA
73681029 ATTACTGAAATAAC-CCTGTAGGGTAGA
1 ATTACTGAAAT-ACTCCTGTAGGGTAGA
73681056 ATTACTGAAAT
1 ATTACTGAAAT
73681067 GCCCTTGGTT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
27 61 0.97
28 2 0.03
ACGTcount: A:0.37, C:0.14, G:0.20, T:0.29
Consensus pattern (27 bp):
ATTACTGAAATACTCCTGTAGGGTAGA
Found at i:73681085 original size:27 final size:27
Alignment explanation
Indices: 73681055--73681397 Score: 272
Period size: 27 Copynumber: 12.7 Consensus size: 27
73681045 TGTAGGGTAG
* * *
73681055 AATTACTGAAATGCCCTTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * **
73681082 AATTACTGAAATACCCTCGACCTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* ** *
73681109 AATTATCGAAATACCCTCAACTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
73681136 AATTACCAAAATACCCTCGATTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * * *
73681163 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCGAAATACCCTTGATTTGTAA
* * ** *
73681190 AATTACTGAAATACCCTCGACCTATAA
1 AATTACCGAAATACCCTTGATTTGTAA
**
73681217 AATTACCGAAATACCCTTGACCTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* *
73681244 AATTACCGAAATACCCCTGATTTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
73681271 AGTTACCGAAATACCCTTGAATTGGAA
1 AATTACCGAAATACCCTTGATTTGTAA
** * * **
73681298 AATTACAAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *** * *
73681325 AATTGCAGAAATAATATTGGTTTGCAA
1 AATTACCGAAATACCCTTGATTTGTAA
*
73681352 AATTACCGAAATACCCTTGGTTTGTAA
1 AATTACCGAAATACCCTTGATTTGTAA
* * *
73681379 ATTTACCAAAACACCCTTG
1 AATTACCGAAATACCCTTG
73681398 TAGGATGAAA
Statistics
Matches: 254, Mismatches: 62, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 254 1.00
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGATTTGTAA
Found at i:73681086 original size:54 final size:53
Alignment explanation
Indices: 73680975--73681098 Score: 155
Period size: 54 Copynumber: 2.3 Consensus size: 53
73680965 GTAGACTAGT
* *
73680975 ATTACTAAAATACTCCTGTAGGGTAGAATTACTGAAATACTCCTGTAGGGTAGA
1 ATTACTGAAATAC-CCTGTAGGGTAGAATTACTGAAATACTCCTGTAGGGTAAA
*
73681029 ATTACTGAAATAACCCTGTAGGGTAGAATTACTGAAATGC-CCT-T-GGTTTGTAAA
1 ATTACTGAAAT-ACCCTGTAGGGTAGAATTACTGAAATACTCCTGTAGG---GTAAA
73681083 ATTACTGAAATACCCT
1 ATTACTGAAATACCCT
73681099 CGACCTGTAA
Statistics
Matches: 63, Mismatches: 3, Indels: 9
0.84 0.04 0.12
Matches are distributed among these distances:
51 2 0.03
52 1 0.02
53 8 0.13
54 50 0.79
55 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.31
Consensus pattern (53 bp):
ATTACTGAAATACCCTGTAGGGTAGAATTACTGAAATACTCCTGTAGGGTAAA
Found at i:73681672 original size:41 final size:41
Alignment explanation
Indices: 73681615--73681739 Score: 196
Period size: 41 Copynumber: 3.0 Consensus size: 41
73681605 AGAAGAAGAA
* * * *
73681615 ATTGAGAATCGCATGGTTGCTTGACGACCATGGATCCACTG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
*
73681656 ATTGAGGATCACATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
*
73681697 ATTAAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
73681738 AT
1 AT
73681740 GGCTTTTAAG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 77 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGATGACCGTGGATCCACCG
Found at i:73681931 original size:22 final size:22
Alignment explanation
Indices: 73681879--73681932 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
73681869 GCCAATTATT
*
73681879 CTGATTATGGCTTTGCGCAAAC
1 CTGATTATGGCTCTGCGCAAAC
* * *
73681901 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGCGCAAAC
73681923 CTGATTATGG
1 CTGATTATGG
73681933 TTGTGTACCA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGCGCAAAC
Found at i:73690807 original size:19 final size:19
Alignment explanation
Indices: 73690783--73690819 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
73690773 TCAAAAATCA
73690783 ATTTTTGTTGAAGTTTTTT
1 ATTTTTGTTGAAGTTTTTT
*
73690802 ATTTTTTTTGAAGTTTTT
1 ATTTTTGTTGAAGTTTTT
73690820 GGTTCCAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (19 bp):
ATTTTTGTTGAAGTTTTTT
Found at i:73692455 original size:22 final size:21
Alignment explanation
Indices: 73692423--73692463 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
73692413 AAATCACTTC
73692423 TCAATTTCCAATCAATACACAAT
1 TCAATTTCCAAT-AAT-CACAAT
73692446 TCAA-TTCCAATAATCACA
1 TCAATTTCCAATAATCACA
73692464 TATACTCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
21 3 0.17
22 7 0.39
23 4 0.22
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (21 bp):
TCAATTTCCAATAATCACAAT
Found at i:73692503 original size:13 final size:13
Alignment explanation
Indices: 73692485--73692512 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
73692475 TTTAGCTCAA
73692485 TTCAATTTTCATT
1 TTCAATTTTCATT
73692498 TTCAATTTTCATT
1 TTCAATTTTCATT
73692511 TT
1 TT
73692513 TTAATACAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.00, T:0.64
Consensus pattern (13 bp):
TTCAATTTTCATT
Found at i:73695512 original size:40 final size:40
Alignment explanation
Indices: 73695407--73695552 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
73695397 GCTACTCGTT
*
73695407 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
73695447 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
73695487 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73695528 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73695553 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 75 0.82
41 13 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73703182 original size:40 final size:40
Alignment explanation
Indices: 73703077--73703222 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
73703067 GCTACTCGTT
*
73703077 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
73703117 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
73703157 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
73703198 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73703223 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 75 0.82
41 13 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:73706282 original size:12 final size:12
Alignment explanation
Indices: 73706251--73706275 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73706241 AATTTTTCCT
73706251 TCTTTTTCTTTC
1 TCTTTTTCTTTC
73706263 TCTTTTTCTTTC
1 TCTTTTTCTTTC
73706275 T
1 T
73706276 TTCTTTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCTTTTTCTTTC
Found at i:73706373 original size:5 final size:5
Alignment explanation
Indices: 73706365--73706394 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
73706355 TTATTAAACA
73706365 AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT
73706395 TATTTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:73706543 original size:5 final size:5
Alignment explanation
Indices: 73706528--73706563 Score: 54
Period size: 5 Copynumber: 6.8 Consensus size: 5
73706518 ATTTTATATT
73706528 TATAA TAATAA TATAA TATAA TATATA TATAA TATA
1 TATAA T-ATAA TATAA TATAA TATA-A TATAA TATA
73706564 TTTACTTATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 19 0.66
6 10 0.34
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:73706549 original size:16 final size:16
Alignment explanation
Indices: 73706528--73706563 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
73706518 ATTTTATATT
73706528 TATAATA-ATAATATAA
1 TATAATATAT-ATATAA
73706544 TATAATATATATATAA
1 TATAATATATATATAA
73706560 TATA
1 TATA
73706564 TTTACTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 17 0.89
17 2 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TATAATATATATATAA
Found at i:73710120 original size:21 final size:21
Alignment explanation
Indices: 73710096--73710165 Score: 77
Period size: 21 Copynumber: 3.3 Consensus size: 21
73710086 CAGTACATGG
*
73710096 CCGTGTGATAGAGGCACATGC
1 CCGTGTGATAGAGGCACACGC
* ** * *
73710117 CCGTGTGGTTCAGGGACACGA
1 CCGTGTGATAGAGGCACACGC
73710138 CCGTGTGATAGAGGCACACGC
1 CCGTGTGATAGAGGCACACGC
*
73710159 TCGTGTG
1 CCGTGTG
73710166 GTTTAGGGAC
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.20
Consensus pattern (21 bp):
CCGTGTGATAGAGGCACACGC
Found at i:73710143 original size:42 final size:42
Alignment explanation
Indices: 73710096--73710184 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
73710086 CAGTACATGG
*
73710096 CCGTGTGATAGAGGCACATGCCCGTGTGGTTCAGGGACACGA
1 CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACGA
* *
73710138 CCGTGTGATAGAGGCACACGCTCGTGTGGTTTAGGGACACGA
1 CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACGA
73710180 CCGTG
1 CCGTG
73710185 AGAACAGGCC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.20, C:0.24, G:0.36, T:0.20
Consensus pattern (42 bp):
CCGTGTGATAGAGGCACACGCCCGTGTGGTTCAGGGACACGA
Found at i:73710177 original size:21 final size:21
Alignment explanation
Indices: 73710117--73710184 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
73710107 AGGCACATGC
73710117 CCGTGTGGTTCAGGGACACGA
1 CCGTGTGGTTCAGGGACACGA
* ** *
73710138 CCGTGTGATAGAGGCACACG-
1 CCGTGTGGTTCAGGGACACGA
*
73710158 CTCGTGTGGTTTAGGGACACGA
1 C-CGTGTGGTTCAGGGACACGA
73710180 CCGTG
1 CCGTG
73710185 AGAACAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.03
21 35 0.95
22 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.37, T:0.21
Consensus pattern (21 bp):
CCGTGTGGTTCAGGGACACGA
Found at i:73710936 original size:25 final size:24
Alignment explanation
Indices: 73710888--73710936 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
73710878 AAAAACGTTC
*
73710888 TAGAAAAACAAAATAAAACCAAAA
1 TAGAAAAACAAAATAAAAACAAAA
* *
73710912 TAGAAAATACCAAATAAAAATAAAA
1 TAGAAAA-ACAAAATAAAAACAAAA
73710937 ATAAGGAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.73, C:0.10, G:0.04, T:0.12
Consensus pattern (24 bp):
TAGAAAAACAAAATAAAAACAAAA
Found at i:73715603 original size:14 final size:14
Alignment explanation
Indices: 73715584--73715613 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73715574 TAGTCTCTTT
*
73715584 TTCTTTTTCTTTTA
1 TTCTTTTTATTTTA
73715598 TTCTTTTTATTTTA
1 TTCTTTTTATTTTA
73715612 TT
1 TT
73715614 ATTAAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (14 bp):
TTCTTTTTATTTTA
Found at i:73715630 original size:5 final size:5
Alignment explanation
Indices: 73715622--73715679 Score: 116
Period size: 5 Copynumber: 11.6 Consensus size: 5
73715612 TTATTAAACA
73715622 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
73715672 AATAT AAT
1 AATAT AAT
73715680 TTATTTATTC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 53 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATAT
Found at i:73715820 original size:20 final size:21
Alignment explanation
Indices: 73715797--73715840 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
73715787 TATATATTTT
*
73715797 ATATTTATA-ATAATAATATA
1 ATATTAATATATAATAATATA
*
73715817 ATA-TAATATGTAATAATATA
1 ATATTAATATATAATAATATA
73715837 ATAT
1 ATAT
73715841 ATTTACTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATATTAATATATAATAATATA
Found at i:73718919 original size:13 final size:13
Alignment explanation
Indices: 73718901--73718925 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73718891 ATTTTCCAAG
73718901 TCATTTTCATTTA
1 TCATTTTCATTTA
73718914 TCATTTTCATTT
1 TCATTTTCATTT
73718926 TGGAGAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.16, G:0.00, T:0.64
Consensus pattern (13 bp):
TCATTTTCATTTA
Found at i:73723180 original size:45 final size:43
Alignment explanation
Indices: 73723116--73723242 Score: 150
Period size: 44 Copynumber: 2.9 Consensus size: 43
73723106 GAATTTAGAA
* * * *
73723116 ATCCGAACTCGTTGAGTTGGTCTGGGTTCGTGATAT-G-TATGAGGC
1 ATCCGAGCTCGTTGAGTTGGTC-GAGTTCAT--TATGGATACGA-GC
73723161 ATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGAGC
1 ATCCGAGCTCGTTGAGTTGGT-CGAGTTCATTATGGATACGAGC
73723205 ATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGAT
1 ATCCGAGCTCGTTGAGTTGGT-CGAGTTCATTATGGAT
73723243 GCGTTACATG
Statistics
Matches: 74, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
43 3 0.04
44 40 0.54
45 30 0.41
46 1 0.01
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.32
Consensus pattern (43 bp):
ATCCGAGCTCGTTGAGTTGGTCGAGTTCATTATGGATACGAGC
Found at i:73723216 original size:44 final size:44
Alignment explanation
Indices: 73723159--73723242 Score: 159
Period size: 44 Copynumber: 1.9 Consensus size: 44
73723149 TATGTATGAG
73723159 GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGA
1 GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGA
*
73723203 GCATCCGAGCTCGTTGAGTTGGTCCGAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGAT
73723243 GCGTTACATG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (44 bp):
GCATCCGAGCTCGTTGAGTTGGTACGAGTTCATTATGGATACGA
Found at i:73731661 original size:17 final size:18
Alignment explanation
Indices: 73731631--73731665 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
73731621 ATAAGAACTC
*
73731631 AAAAAAGAGAAGAAAAGA
1 AAAAAACAGAAGAAAAGA
73731649 AAAAAACAG-AGAAAAGA
1 AAAAAACAGAAGAAAAGA
73731666 TGGAGATGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.77, C:0.03, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAAACAGAAGAAAAGA
Found at i:73738219 original size:19 final size:20
Alignment explanation
Indices: 73738181--73738227 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
73738171 CATAAATTAG
*
73738181 ATCGAGCTGAATTTGAACTC
1 ATCGAGCTGAATTCGAACTC
*
73738201 ATCGAGTTG-ATTCGAACTC
1 ATCGAGCTGAATTCGAACTC
*
73738220 ATAGAGCT
1 ATCGAGCT
73738228 AAGGCTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (20 bp):
ATCGAGCTGAATTCGAACTC
Found at i:73741204 original size:15 final size:16
Alignment explanation
Indices: 73741184--73741222 Score: 62
Period size: 15 Copynumber: 2.5 Consensus size: 16
73741174 TTTCTCACAT
73741184 TCTTTTTCTTTT-TCA
1 TCTTTTTCTTTTCTCA
73741199 TCTTTTTCTTTTCTCA
1 TCTTTTTCTTTTCTCA
*
73741215 TTTTTTTC
1 TCTTTTTC
73741223 ACTTTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (16 bp):
TCTTTTTCTTTTCTCA
Found at i:73744585 original size:67 final size:67
Alignment explanation
Indices: 73744513--73744645 Score: 203
Period size: 67 Copynumber: 2.0 Consensus size: 67
73744503 TCCTTTTCAA
** *
73744513 AGAGCACACTCCTGCGAACCTCATTTCTTACAATAGGATTACCAGTCCAAGCTAAATCCCCTGTA
1 AGAGCACACTCCCACGAACCTCATTTCTTACAACAGGATTACCAGTCCAAGCTAAATCCCCTGTA
73744578 AG
66 AG
* * * *
73744580 AGAGCACACTCCCACGAACCTCATTTCTTACAGCGGGATTACCAGTCCAGGCTAAATTCCCTGTA
1 AGAGCACACTCCCACGAACCTCATTTCTTACAACAGGATTACCAGTCCAAGCTAAATCCCCTGTA
73744645 A
66 A
73744646 CATATGCTCA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.30, C:0.31, G:0.16, T:0.23
Consensus pattern (67 bp):
AGAGCACACTCCCACGAACCTCATTTCTTACAACAGGATTACCAGTCCAAGCTAAATCCCCTGTA
AG
Found at i:73746512 original size:13 final size:13
Alignment explanation
Indices: 73746494--73746518 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
73746484 CAAAACATTA
73746494 AAATTTTCTGACG
1 AAATTTTCTGACG
73746507 AAATTTTCTGAC
1 AAATTTTCTGAC
73746519 ACTCTGTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (13 bp):
AAATTTTCTGACG
Found at i:73747450 original size:27 final size:27
Alignment explanation
Indices: 73747403--73747474 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
73747393 ATATTAAAAT
*
73747403 TATGTAATACGCTAAGACAAATTAATGA
1 TATGTATTA-GCTAAGACAAATTAATGA
73747431 TATGTATTAGCTAAGACAAATTAATGA
1 TATGTATTAGCTAAGACAAATTAATGA
* *
73747458 TGTGTATTAACTAAGAC
1 TATGTATTAGCTAAGAC
73747475 TTATTAAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 33 0.80
28 8 0.20
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.32
Consensus pattern (27 bp):
TATGTATTAGCTAAGACAAATTAATGA
Found at i:73748012 original size:26 final size:26
Alignment explanation
Indices: 73747967--73748038 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
73747957 TATCTTCTAG
** *
73747967 AAATTTTACTAGAGGCAAAATCGCCA
1 AAATTTTACTAGAGATAAAATCACCA
* *
73747993 AAATTTTACTAGAGATAAAAGCATCA
1 AAATTTTACTAGAGATAAAATCACCA
* *
73748019 AAATTTTGCT-GGGATAAAAT
1 AAATTTTACTAGAGATAAAAT
73748039 AGGGATAAGA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
25 8 0.21
26 30 0.79
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.28
Consensus pattern (26 bp):
AAATTTTACTAGAGATAAAATCACCA
Found at i:73770207 original size:15 final size:14
Alignment explanation
Indices: 73770186--73770228 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
73770176 ACTTTTTCTA
73770186 CTCTTTTTCTTTT-
1 CTCTTTTTCTTTTG
*
73770199 CATTCTTTTTATTTTG
1 C--TCTTTTTCTTTTG
73770215 CTCTTTTTCTTTTG
1 CTCTTTTTCTTTTG
73770229 ATCTCTCCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.05, C:0.19, G:0.05, T:0.72
Consensus pattern (14 bp):
CTCTTTTTCTTTTG
Found at i:73774156 original size:10 final size:11
Alignment explanation
Indices: 73774141--73774199 Score: 63
Period size: 10 Copynumber: 5.7 Consensus size: 11
73774131 CCGAACAAAT
73774141 ATAAATAT-AA
1 ATAAATATAAA
*
73774151 ATAAATA-AAT
1 ATAAATATAAA
**
73774161 ATTTATATAAA
1 ATAAATATAAA
73774172 ATAAA-ATAAA
1 ATAAATATAAA
73774182 ATAAA-ATAAA
1 ATAAATATAAA
73774192 ATAAATAT
1 ATAAATAT
73774200 TATATTTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
10 33 0.82
11 7 0.17
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
ATAAATATAAA
Found at i:73774177 original size:5 final size:5
Alignment explanation
Indices: 73774167--73774196 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
73774157 AAATATTTAT
73774167 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
73774197 TATTATATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:73774184 original size:37 final size:39
Alignment explanation
Indices: 73774137--73774212 Score: 113
Period size: 37 Copynumber: 2.0 Consensus size: 39
73774127 GTTACCGAAC
73774137 AAATATAAATATAAAT-AAATAAATATT-TATATAAAATA
1 AAATATAAATA-AAATAAAATAAATATTATATATAAAATA
*
73774175 AAATA-AAATAAAATAAAATAAATATTATATTTAAAATA
1 AAATATAAATAAAATAAAATAAATATTATATATAAAATA
73774213 TAGATATGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
36 4 0.11
37 16 0.46
38 15 0.43
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (39 bp):
AAATATAAATAAAATAAAATAAATATTATATATAAAATA
Found at i:73775153 original size:13 final size:14
Alignment explanation
Indices: 73775125--73775163 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
73775115 CCCTAAACTC
*
73775125 TAAATTCTTGAACCT
1 TAAA-TCTTAAACCT
73775140 TAAA-CTTAAACCT
1 TAAATCTTAAACCT
73775153 TAAATCTTAAA
1 TAAATCTTAAA
73775164 TTTCAAACCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 12 0.55
14 6 0.27
15 4 0.18
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.36
Consensus pattern (14 bp):
TAAATCTTAAACCT
Found at i:73775504 original size:24 final size:24
Alignment explanation
Indices: 73775477--73775528 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
73775467 ATAATAATAC
*
73775477 TTTGTTATCTTTAAAATTTAATGA
1 TTTGTCATCTTTAAAATTTAATGA
73775501 TTTGTCATCTTTAAAATTTAATGA
1 TTTGTCATCTTTAAAATTTAATGA
73775525 TTTG
1 TTTG
73775529 ACACTATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.31, C:0.06, G:0.10, T:0.54
Consensus pattern (24 bp):
TTTGTCATCTTTAAAATTTAATGA
Found at i:73784050 original size:39 final size:39
Alignment explanation
Indices: 73783996--73784071 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
73783986 CATGATAAAC
* *
73783996 TCTAGTCTTTTTAATAGGCAACAGTTTATTGAAATTAGT
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
73784035 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
73784072 ATCATGCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (39 bp):
TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
Found at i:73785244 original size:39 final size:39
Alignment explanation
Indices: 73785190--73785265 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
73785180 CATGATAAAC
* *
73785190 TCTAGTCTTTTTAATAGGCAACAGTTTATTGAAATTAGT
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
73785229 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
73785266 ATCATGCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (39 bp):
TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
Found at i:73786438 original size:39 final size:39
Alignment explanation
Indices: 73786384--73786459 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
73786374 CATGATAAAC
* *
73786384 TCTAGTCTTTTTAATAGGCAACAGTTTATTGAAATTAGT
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
73786423 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
1 TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTA
73786460 ATCATGCTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.12, G:0.14, T:0.42
Consensus pattern (39 bp):
TCTAGGCTTTTTAATAGGCAACACTTTATTGAAATTAGT
Found at i:73788804 original size:3 final size:3
Alignment explanation
Indices: 73788796--73788823 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
73788786 ATTTACTGTT
73788796 GCA GCA GCA GCA GCA GCA GCA GCA GCA G
1 GCA GCA GCA GCA GCA GCA GCA GCA GCA G
73788824 TCTGTTTCAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.36, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:73793570 original size:18 final size:18
Alignment explanation
Indices: 73793518--73793570 Score: 61
Period size: 18 Copynumber: 2.9 Consensus size: 18
73793508 AAGCTTCAGT
*
73793518 AATGAAAAATGTTTTGGA
1 AATGAATAATGTTTTGGA
* * *
73793536 AACTGAATATTGATTTGTA
1 AA-TGAATAATGTTTTGGA
73793555 AATGAATAATGTTTTG
1 AATGAATAATGTTTTG
73793571 AAAAGGTATG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (18 bp):
AATGAATAATGTTTTGGA
Found at i:73801134 original size:27 final size:27
Alignment explanation
Indices: 73801100--73801176 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
73801090 GGGCAAAACA
* *
73801100 GTCATTTTATC-CTATAGGGGTATGTCG
1 GTCATTTTA-CACTACAAGGGTATGTCG
*
73801127 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
73801154 GTAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
73801177 TTTGATAATT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 44 0.98
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:73801428 original size:27 final size:27
Alignment explanation
Indices: 73801117--73801420 Score: 339
Period size: 27 Copynumber: 11.3 Consensus size: 27
73801107 TATCCTATAG
* * *
73801117 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CAA
*
73801144 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CAA
* * *
73801171 GGGTATTTTGATAATTTTACAAATCAG
1 GGGTATTTCGGTAATTTTACAAATCAA
*
73801198 GGGTATTTTGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCAA
*
73801225 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
* * **
73801252 GGGTGTTTCAGG-AATTTCACAAATTGA
1 GGGTATTTC-GGTAATTTTACAAATCAA
* *
73801279 GGGTATTTCGGCAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
* * *
73801306 GGGTATTTCAGTAATTTCA-AAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
*
73801332 GGGTATTTCGATAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCAA
** * *
73801359 GGGTATTTCAATAATTTCA-AAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
73801385 GGGTATTTCGGTAATTTTACAAATCAA
1 GGGTATTTCGGTAATTTTACAAATCAA
73801412 GGGTATTTC
1 GGGTATTTC
73801421 AATAATTTCT
Statistics
Matches: 242, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
26 47 0.19
27 191 0.79
28 4 0.02
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCAA
Found at i:73801789 original size:28 final size:28
Alignment explanation
Indices: 73801745--73801808 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
73801735 TGGCCCCTTT
* *
73801745 AGGCCCAATCTCGTTCACATGACCCATC
1 AGGCCCAATCACATTCACATGACCCATC
** *
73801773 AGGCCCAATCACATTCATGTGGCCCATC
1 AGGCCCAATCACATTCACATGACCCATC
*
73801801 AAGCCCAA
1 AGGCCCAA
73801809 CTACTTCCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.38, G:0.16, T:0.19
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGACCCATC
Found at i:73803511 original size:18 final size:18
Alignment explanation
Indices: 73803459--73803511 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
73803449 AAGCTTCCGT
*
73803459 AATGAAAAATGTTTTGGA
1 AATGAATAATGTTTTGGA
* *
73803477 AACTGAAT-ATCGATTTGTA
1 AA-TGAATAAT-GTTTTGGA
73803496 AATGAATAATGTTTTG
1 AATGAATAATGTTTTG
73803512 AAAAGGTACG
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
18 14 0.50
19 14 0.50
ACGTcount: A:0.40, C:0.04, G:0.19, T:0.38
Consensus pattern (18 bp):
AATGAATAATGTTTTGGA
Found at i:73806205 original size:6 final size:6
Alignment explanation
Indices: 73806196--73806246 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
73806186 TAAGTCTAAG
73806196 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
73806244 AAA
1 AAA
73806247 CAAATGGACT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:73808886 original size:43 final size:45
Alignment explanation
Indices: 73808839--73808955 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 45
73808829 AATGTCAACG
* * ** *
73808839 TCCCAGACGTGGTCTTACATG-TAA-TGACATATCAATGCCACTA
1 TCCCAGACGTGGTCTTACACGAGAACACACATATCAATGCCAATA
* ** *
73808882 TCCCACACAG-GGTCTTACACGAGAACACACATATCGTTGCCAATG
1 TCCCAGAC-GTGGTCTTACACGAGAACACACATATCAATGCCAATA
73808927 TCCCAGACGTGGTCTTACACGAGAACACA
1 TCCCAGACGTGGTCTTACACGAGAACACA
73808956 TATCGGAAAT
Statistics
Matches: 60, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
43 17 0.28
44 4 0.07
45 39 0.65
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (45 bp):
TCCCAGACGTGGTCTTACACGAGAACACACATATCAATGCCAATA
Found at i:73813767 original size:13 final size:13
Alignment explanation
Indices: 73813749--73813775 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
73813739 GAAGTAATCG
73813749 CACACGGGCGTGT
1 CACACGGGCGTGT
73813762 CACACGGGCGTGT
1 CACACGGGCGTGT
73813775 C
1 C
73813776 CCTACCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:73822217 original size:24 final size:22
Alignment explanation
Indices: 73822175--73822218 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
73822165 TTAAAGTGTA
73822175 AATATGAAAAATTTGAAGGACC
1 AATATGAAAAATTTGAAGGACC
*
73822197 AATAGTGAAAATATTTTAAGGA
1 AATA-TGAAAA-ATTTGAAGGA
73822219 TGGAATGATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 6 0.32
24 9 0.47
ACGTcount: A:0.50, C:0.05, G:0.18, T:0.27
Consensus pattern (22 bp):
AATATGAAAAATTTGAAGGACC
Found at i:73824732 original size:47 final size:46
Alignment explanation
Indices: 73824617--73824796 Score: 234
Period size: 46 Copynumber: 3.9 Consensus size: 46
73824607 TTCTGAAATG
* * * *
73824617 AAATGTGTAAGGCCATGGTTGAAAGATACCATAGCAACATGATAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * *
73824663 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGACGGGG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGA
* *
73824710 AAATGAATAAGACCTTGGTTGAAAGATACCATGGCAACATGACAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
* * * *
73824756 AAACGAGTAAGACCATAGTTGAAAGATACTATGGCATCATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATG
73824797 TCGAAGATAA
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
46 76 0.65
47 41 0.35
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGA
Found at i:73824919 original size:26 final size:26
Alignment explanation
Indices: 73824879--73824928 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
73824869 ACCAGATGAC
*
73824879 AAATGGTTATATGAATTGGTTATACA
1 AAATGGTTATATGAAATGGTTATACA
* * *
73824905 AAATGGTTGTGTGAAATGTTTATA
1 AAATGGTTATATGAAATGGTTATA
73824929 GGAATTGGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.02, G:0.22, T:0.40
Consensus pattern (26 bp):
AAATGGTTATATGAAATGGTTATACA
Found at i:73827802 original size:15 final size:15
Alignment explanation
Indices: 73827783--73827822 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
73827773 ATGAATCTTA
*
73827783 AAAAATAAATAGAAAT
1 AAAAATAAAGA-AAAT
*
73827799 AAAAGTAAAGAAAAT
1 AAAAATAAAGAAAAT
73827814 AAAAATAAA
1 AAAAATAAA
73827823 ACGAGTTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (15 bp):
AAAAATAAAGAAAAT
Found at i:73831731 original size:10 final size:10
Alignment explanation
Indices: 73831716--73831757 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
73831706 GCTCGTCAAC
73831716 CAATTTTACA
1 CAATTTTACA
73831726 CAA-TTTATCA
1 CAATTTTA-CA
73831736 CAATTTTACA
1 CAATTTTACA
*
73831746 CACTTTTACA
1 CAATTTTACA
73831756 CA
1 CA
73831758 CTTTGTCAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 4 0.14
10 21 0.72
11 4 0.14
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (10 bp):
CAATTTTACA
Found at i:73832626 original size:12 final size:12
Alignment explanation
Indices: 73832611--73832635 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73832601 AACCAATAAT
73832611 AATAAAGAAATA
1 AATAAAGAAATA
73832623 AATAAAGAAATA
1 AATAAAGAAATA
73832635 A
1 A
73832636 TAATAATAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.08, T:0.16
Consensus pattern (12 bp):
AATAAAGAAATA
Found at i:73842028 original size:26 final size:26
Alignment explanation
Indices: 73841999--73842049 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
73841989 ATCCAGAAAT
73841999 TCTGCTTGCGCAATCTTTATTAAAAC
1 TCTGCTTGCGCAATCTTTATTAAAAC
* *
73842025 TCTGCTTGCGCAGTTTTTATTAAAA
1 TCTGCTTGCGCAATCTTTATTAAAA
73842050 TAATAATAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.14, T:0.41
Consensus pattern (26 bp):
TCTGCTTGCGCAATCTTTATTAAAAC
Found at i:73851212 original size:43 final size:43
Alignment explanation
Indices: 73851072--73851221 Score: 155
Period size: 43 Copynumber: 3.5 Consensus size: 43
73851062 CGTACAATGA
*
73851072 CAACGTCCCAGACGTGGTCTTACATGTAATCACATATCGATGC
1 CAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
* * * ** * *
73851115 C-AC-TGCCTTAGATAGGGTCTTACA-CAAATCAGATA-CGATGT
1 CAACGT-CC-CAGACATGGTCTTACATGTAATCACATATCGATGC
* * *
73851156 CGATGTCCTAGACATGGTCTTACATGTAATCACATATCGATGC
1 CAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
73851199 CAACGTCCCAGACATGGTCTTAC
1 CAACGTCCCAGACATGGTCTTAC
73851222 TTGAGAAAAC
Statistics
Matches: 83, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
41 21 0.25
42 23 0.28
43 39 0.47
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (43 bp):
CAACGTCCCAGACATGGTCTTACATGTAATCACATATCGATGC
Found at i:73851852 original size:19 final size:19
Alignment explanation
Indices: 73851828--73851866 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
73851818 CCAATACAAA
73851828 ACATATCAATCCAAAACAT
1 ACATATCAATCCAAAACAT
*
73851847 ACATATCAATTCAAAACAT
1 ACATATCAATCCAAAACAT
73851866 A
1 A
73851867 TCTTTCATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.54, C:0.23, G:0.00, T:0.23
Consensus pattern (19 bp):
ACATATCAATCCAAAACAT
Found at i:73852571 original size:23 final size:22
Alignment explanation
Indices: 73852545--73852588 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
73852535 GTGATGAGGT
*
73852545 TATCTGGTAAATATGTATGAATC
1 TATCTGGAAAATATGT-TGAATC
*
73852568 TATCTTGAAAATATGTTGAAT
1 TATCTGGAAAATATGTTGAAT
73852589 TGGATTGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.41
Consensus pattern (22 bp):
TATCTGGAAAATATGTTGAATC
Found at i:73862678 original size:187 final size:187
Alignment explanation
Indices: 73862363--73862729 Score: 626
Period size: 187 Copynumber: 2.0 Consensus size: 187
73862353 CATTTGTTGT
* * * *
73862363 GGATTCTCTGTAGCTTGTGTGAGTAGCATCGTGAGTCAGTCAAAACTCTGAAATTAACTCGAATG
1 GGATTCTCTGTAGCTTGTGTAAGTAGCATCATGAGCCAGTCAAAACTATGAAATTAACTCGAATG
* *
73862428 AATGATACTATCTGATTACTTGAGATTAGATCTTATTAATTCGACGATGGAGAATGTGATGTGAA
66 AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATGGAGAATGTGATGTGAA
*
73862493 TTAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAATCTATTGC
131 TAAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAATCTATTGC
* *
73862550 GGATTCTTTGTAGCTTGTGTAAGTAGCATCATGAGCCGGTCAAAACTATGAAATTAACTCGAATG
1 GGATTCTCTGTAGCTTGTGTAAGTAGCATCATGAGCCAGTCAAAACTATGAAATTAACTCGAATG
*
73862615 AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATTGAGAATGTGATGTGAA
66 AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATGGAGAATGTGATGTGAA
* *
73862680 TAAATGCACTGTGTAATTCTCACCTATTGTGAGTTGTTATTGATAGGAAT
131 TAAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAAT
73862730 TCTGATAATA
Statistics
Matches: 168, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
187 168 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (187 bp):
GGATTCTCTGTAGCTTGTGTAAGTAGCATCATGAGCCAGTCAAAACTATGAAATTAACTCGAATG
AATGATACTATCTGATTACCTGAGATTAGATCTTATTAATGCGACGATGGAGAATGTGATGTGAA
TAAATGCACTATGTAATTCTCACCTATTGTGAGTTATTATTGATAGGAATCTATTGC
Found at i:73882226 original size:14 final size:14
Alignment explanation
Indices: 73882209--73882237 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
73882199 ATAGGAGAAG
73882209 GGACAAGGATAAAA
1 GGACAAGGATAAAA
73882223 GGACAAGGATAAAA
1 GGACAAGGATAAAA
73882237 G
1 G
73882238 CTCTAGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.07, G:0.31, T:0.07
Consensus pattern (14 bp):
GGACAAGGATAAAA
Found at i:73887685 original size:22 final size:22
Alignment explanation
Indices: 73887655--73887700 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
73887645 TGTTACAAGG
*
73887655 CTATCCGTCATTTTGGTTTGCA
1 CTATCCGTCATTTTGATTTGCA
*
73887677 CTATTCGTCATTTTGATTTGCA
1 CTATCCGTCATTTTGATTTGCA
73887699 CT
1 CT
73887701 TTGGACTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (22 bp):
CTATCCGTCATTTTGATTTGCA
Found at i:73889985 original size:28 final size:28
Alignment explanation
Indices: 73889954--73890038 Score: 107
Period size: 28 Copynumber: 3.0 Consensus size: 28
73889944 CGCCACTTTA
* * * *
73889954 GCTTGCACTGTCCATCATTTTGGCTTGT
1 GCTTGGACTATCCGTCATTTTGGCTTGC
73889982 GCTTTGGACTATCCGTCATTTTGGCTTGC
1 GC-TTGGACTATCCGTCATTTTGGCTTGC
* *
73890011 ACTTGGACTATCCGTCACTTTGGCTTGC
1 GCTTGGACTATCCGTCATTTTGGCTTGC
73890039 ATTGTCCACC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
28 27 0.54
29 23 0.46
ACGTcount: A:0.12, C:0.26, G:0.22, T:0.40
Consensus pattern (28 bp):
GCTTGGACTATCCGTCATTTTGGCTTGC
Found at i:73890001 original size:29 final size:28
Alignment explanation
Indices: 73889968--73890039 Score: 108
Period size: 28 Copynumber: 2.5 Consensus size: 28
73889958 GCACTGTCCA
**
73889968 TCATTTTGGCTTGTGCTTTGGACTATCCG
1 TCATTTTGGCTTGCAC-TTGGACTATCCG
73889997 TCATTTTGGCTTGCACTTGGACTATCCG
1 TCATTTTGGCTTGCACTTGGACTATCCG
*
73890025 TCACTTTGGCTTGCA
1 TCATTTTGGCTTGCA
73890040 TTGTCCACCA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 26 0.65
29 14 0.35
ACGTcount: A:0.12, C:0.24, G:0.22, T:0.42
Consensus pattern (28 bp):
TCATTTTGGCTTGCACTTGGACTATCCG
Found at i:73890676 original size:24 final size:24
Alignment explanation
Indices: 73890646--73890695 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
73890636 ACTATCATTG
* *
73890646 TTAACCTTCTAATTTAGATAACCA
1 TTAACCTCCTAATCTAGATAACCA
73890670 TTAACCTCCTAATCTAGATAACCA
1 TTAACCTCCTAATCTAGATAACCA
73890694 TT
1 TT
73890696 CTCCTTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (24 bp):
TTAACCTCCTAATCTAGATAACCA
Found at i:73892126 original size:12 final size:12
Alignment explanation
Indices: 73892109--73892141 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
73892099 CAGCCCGCCC
73892109 ATATTAATTTTT
1 ATATTAATTTTT
73892121 ATATT-ATTTTT
1 ATATTAATTTTT
73892132 ATA-TAATTTT
1 ATATTAATTTT
73892142 AAAATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.05
11 14 0.70
12 5 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:73892382 original size:22 final size:22
Alignment explanation
Indices: 73892357--73892399 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
73892347 TATCCAAACA
73892357 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* * *
73892379 ATAATAATAAAATGGTAGCAA
1 ATAACAACAAAATAGTAGCAA
73892400 AATAGTGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:73892751 original size:15 final size:15
Alignment explanation
Indices: 73892707--73892759 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
73892697 GGGGTTTCTA
73892707 AATTTTTTAATAAAATT
1 AATTTTTT-ATAAAA-T
*
73892724 AATTAGTTT-TAAAAT
1 AATT-TTTTATAAAAT
73892739 AATTTTTTATAAAAT
1 AATTTTTTATAAAAT
73892754 AATTTT
1 AATTTT
73892760 AATTCTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
14 3 0.09
15 17 0.53
16 5 0.16
17 4 0.12
18 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
AATTTTTTATAAAAT
Found at i:73898754 original size:4 final size:4
Alignment explanation
Indices: 73898745--73898775 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
73898735 TCTTGCTCAT
73898745 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
73898776 TAAATTACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:73902661 original size:20 final size:21
Alignment explanation
Indices: 73902638--73902695 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
73902628 TTAGGGTTGG
73902638 TTTTTTATATATTTTATAA-T
1 TTTTTTATATATTTTATAATT
*
73902658 TTTTTTATATATTATTTTAATT
1 TTTTTTATATATT-TTATAATT
73902680 TTTTTTATATAATTTT
1 TTTTTTATAT-ATTTT
73902696 TTTTATAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.38
21 5 0.15
22 13 0.38
23 3 0.09
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTTTATATATTTTATAATT
Found at i:73902695 original size:12 final size:12
Alignment explanation
Indices: 73902652--73902711 Score: 54
Period size: 12 Copynumber: 5.0 Consensus size: 12
73902642 TTATATATTT
73902652 TATAATTTTTT-
1 TATAATTTTTTA
73902663 TATATATTATTTTA
1 TATA-ATT-TTTTA
*
73902677 -AT-TTTTTTTA
1 TATAATTTTTTA
*
73902687 TATAATTTTTTT
1 TATAATTTTTTA
73902699 TATAATTCTTTTA
1 TATAATT-TTTTA
73902712 GATGTAAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
10 5 0.13
11 8 0.21
12 16 0.41
13 10 0.26
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (12 bp):
TATAATTTTTTA
Found at i:73902697 original size:22 final size:20
Alignment explanation
Indices: 73902638--73902697 Score: 84
Period size: 22 Copynumber: 2.9 Consensus size: 20
73902628 TTAGGGTTGG
*
73902638 TTTTTTATATATTTTATAAT
1 TTTTTTATATATTTTTTAAT
73902658 TTTTTTATATATTATTTTAATT
1 TTTTTTATATATT-TTTTAA-T
73902680 TTTTTTATATAATTTTTT
1 TTTTTTATAT-ATTTTTT
73902698 TTATAATTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
20 13 0.36
21 5 0.14
22 15 0.42
23 3 0.08
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTTTATATATTTTTTAAT
Found at i:73902710 original size:14 final size:14
Alignment explanation
Indices: 73902675--73902702 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73902665 TATATTATTT
73902675 TAATTTTTTTTATA
1 TAATTTTTTTTATA
73902689 TAATTTTTTTTATA
1 TAATTTTTTTTATA
73902703 ATTCTTTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TAATTTTTTTTATA
Found at i:73906110 original size:23 final size:23
Alignment explanation
Indices: 73906084--73906158 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 23
73906074 AGACACTTTA
73906084 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
73906107 TGTGTCGTA--TCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* **
73906128 TGTGTCGT-TTT-AGGCACTTTA
1 TGTGTCGTATTTCAGGCACCTCG
73906149 TGTGTCGTAT
1 TGTGTCGTAT
73906159 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
21 35 0.76
22 2 0.04
23 9 0.20
ACGTcount: A:0.13, C:0.21, G:0.27, T:0.39
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:73916250 original size:16 final size:16
Alignment explanation
Indices: 73916218--73916281 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
73916208 GGGGATTGGG
* *
73916218 GAAAGAAAAAAATAGA
1 GAAAGAAAAAGAGAGA
73916234 GAAAGAAAAAGAGAGA
1 GAAAGAAAAAGAGAGA
* *
73916250 GGAAA-AAGAAG-GAAAA
1 -GAAAGAAAAAGAG-AGA
*
73916266 GAAAGAAACAGAGAGA
1 GAAAGAAAAAGAGAGA
73916282 AATCTAAAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
15 5 0.14
16 27 0.73
17 5 0.14
ACGTcount: A:0.69, C:0.02, G:0.28, T:0.02
Consensus pattern (16 bp):
GAAAGAAAAAGAGAGA
Found at i:73916374 original size:21 final size:21
Alignment explanation
Indices: 73916339--73916390 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
73916329 ATTTATTTTA
**
73916339 TATATTTTATTATTTTCATAT
1 TATATTTTAAAATTTTCATAT
* *
73916360 TATTTTTTAAAATTTTTATAT
1 TATATTTTAAAATTTTCATAT
*
73916381 TGTATTTTAA
1 TATATTTTAA
73916391 TATAAAAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TATATTTTAAAATTTTCATAT
Found at i:73921604 original size:14 final size:14
Alignment explanation
Indices: 73921564--73921593 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
73921554 TTAAATTGTT
73921564 TGGACTGAATTATG
1 TGGACTGAATTATG
73921578 TGGACTGAATTATG
1 TGGACTGAATTATG
73921592 TG
1 TG
73921594 ATTGTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.07, G:0.30, T:0.37
Consensus pattern (14 bp):
TGGACTGAATTATG
Found at i:73922751 original size:15 final size:15
Alignment explanation
Indices: 73922731--73922795 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
73922721 GTATCTTGGG
73922731 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
73922746 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
73922761 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
73922776 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
73922790 TTTCTT
1 TTTCTT
73922796 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:73922763 original size:30 final size:31
Alignment explanation
Indices: 73922727--73922795 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
73922717 TATCGTATCT
73922727 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
73922757 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
73922787 -GGTTTTCTT
1 TGGGTTTCTT
73922796 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:73941016 original size:26 final size:26
Alignment explanation
Indices: 73940968--73941032 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
73940958 CTCATAAGAG
* *
73940968 TTTAAATAGGAAGTTCACAAAGAACT
1 TTTAAACAGGAAGTTCACAAAGAACC
* ** *
73940994 TTTAACCAGGAAGTTCATGAAGAGCC
1 TTTAAACAGGAAGTTCACAAAGAACC
73941020 TTTAAACAGGAAG
1 TTTAAACAGGAAG
73941033 CTTATTGAGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.25
Consensus pattern (26 bp):
TTTAAACAGGAAGTTCACAAAGAACC
Found at i:73945037 original size:79 final size:81
Alignment explanation
Indices: 73944936--73945120 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
73944926 GCTACTCGTT
* * *
73944936 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
73944999 GAATTTAGTAAC-TCGCA
64 GAATATAGTAACTTAGCA
* ** *
73945016 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
* *
73945080 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
73945096 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
73945121 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 53 0.59
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGA
ATATAGTAACTTAGCA
Found at i:73945120 original size:40 final size:40
Alignment explanation
Indices: 73944917--73945120 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
73944907 CGGAATTTAA
** *
73944917 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
73944957 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73944997 CCGAATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
73945036 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
73945076 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
73945116 CCGGA
1 CCGGA
73945121 CATCATTCAA
Statistics
Matches: 137, Mismatches: 20, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:73951176 original size:22 final size:21
Alignment explanation
Indices: 73951147--73951187 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
73951137 TAAAATTTCC
* *
73951147 TTTCCTCAATTTTCACGTTCT
1 TTTCCTCAACTTCCACGTTCT
73951168 TTTCTCTCAACTTCCACGTT
1 TTTC-CTCAACTTCCACGTT
73951188 TTCTTTCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.15, C:0.32, G:0.05, T:0.49
Consensus pattern (21 bp):
TTTCCTCAACTTCCACGTTCT
Found at i:73956707 original size:23 final size:23
Alignment explanation
Indices: 73956680--73956725 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
73956670 TAGTGTTGTT
**
73956680 TATTTTTATTTAATTTTTTTAAA
1 TATTTTTATTTAAAATTTTTAAA
*
73956703 TATTTTTCTTTAAAATTTTTAAA
1 TATTTTTATTTAAAATTTTTAAA
73956726 CATTATCATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTTTTATTTAAAATTTTTAAA
Found at i:73962448 original size:23 final size:23
Alignment explanation
Indices: 73962416--73962459 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
73962406 AAAATTTCAC
* *
73962416 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
73962439 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
73962460 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:73977643 original size:96 final size:93
Alignment explanation
Indices: 73977478--73977793 Score: 338
Period size: 96 Copynumber: 3.3 Consensus size: 93
73977468 GGTAGGATGT
* * *
73977478 CGATGTCATGCCCCAAACATGGTCTTACACT-AGCTCATACATCGAGTTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGA-CTCAT-C-TCAAGTTGATGCCATGTCCCAGA
*
73977542 CATGGTCTTACACTGTCTCTCACATATCCGTCC
63 CATGGTCTTACACTG-CTCTCACATAT-CGTGC
*
73977575 CGATGCCATGTCCCAAACATGGTCTTACACTGACACATCTCATAGTTGATGCCATGTCCCAGACA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACTCATCTCA-AGTTGATGCCATGTCCCAGACA
* * *
73977640 TGGTCTTACACTG-GCTCACATCTCGAGGC
65 TGGTCTTACACTGCTCTCACATATCG-TGC
* * * * * *
73977669 CGATGCCATGTCCTAGACATGGTCATACACTAGCTCTCGTCTCAATGCTGATGCCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACT-G-ACTCATCTCAA-GTTGATGCCATGTCCCAGA
* *
73977734 CATGGTCTTACATTGGCTCTCATA-AT-GTGGC
63 CATGGTCTTACACT-GCTCTCACATATCGT-GC
73977765 CGATG-CATGTCCCAAACAT-GTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCTTACACT
73977794 AGGAGACATG
Statistics
Matches: 187, Mismatches: 23, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
93 2 0.01
94 46 0.25
95 16 0.09
96 82 0.44
97 35 0.19
98 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (93 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACTCATCTCAAGTTGATGCCATGTCCCAGACAT
GGTCTTACACTGCTCTCACATATCGTGC
Found at i:73977679 original size:48 final size:48
Alignment explanation
Indices: 73977478--73977793 Score: 254
Period size: 48 Copynumber: 6.6 Consensus size: 48
73977468 GGTAGGATGT
* * * * * *
73977478 CGATGTCATGCCCCAAACATGGTCTTACACTAGCTCATA-CATCGA-GT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATC-TCGAGGC
* * * **
73977525 TGATGCCATGTCCCAGACATGGTCTTACACTGTCTCTCACATATCCG-TCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTG--GCTCACATCT-CGAGGC
* * * *
73977575 CGATGCCATGTCCCAAACATGGTCTTACACT-G-ACACATCTC-ATAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGA-GGC
*
73977621 TGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGC
* * * * * * *
73977669 CGATGCCATGTCCTAGACATGGTCATACACTAGCTCTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGC
* * * * *
73977717 TGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-CTCGAGGC
*
73977765 CGATG-CATGTCCCAAACAT-GTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
73977794 AGGAGACATG
Statistics
Matches: 214, Mismatches: 44, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
45 1 0.00
46 44 0.21
47 41 0.19
48 89 0.42
49 8 0.04
50 31 0.14
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGC
Done.