Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 231 of 295
Found at i:73977784 original size:143 final size:140
Alignment explanation
Indices: 73977476--73977795 Score: 332
Period size: 143 Copynumber: 2.2 Consensus size: 140
73977466 AGGGTAGGAT
* * * **
73977476 GTCGATGTCATGCCCCAAACATGGTCTTACACTAGCTCATACATCGAGTTGATGCCATGTCCCAG
1 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACACATCGAGCCGATGCCATGTCCCAG
*
73977541 ACATGGTCTTACACTGTCTCTCACATATCCGTCCCGATGCCATGTCCCAAACATGGTCTTACACT
66 ACATGGTCATACACTGTCTCTCACATAT-CG-CCCGATGCCATGTCCCAAACATGGTCTTACACT
73977606 GACACATCTCATA
129 GA-ACATCTCATA
* * * *
73977619 GTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATC-TCGAGGCCGATGCCATGTCCT
1 GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACA-CATCGA-GCCGATGCCATGTCCC
* * *
73977683 AGACATGGTCATACACTAGCTCTCGTCTCA-AT-G-CTGATGCCATGTCCCAGACATGGTCTTAC
64 AGACATGGTCATACACT-G-TCTC-TCACATATCGCCCGATGCCATGTCCCAAACATGGTCTTAC
* *
73977745 ATTG-GC-TCTCATAA
126 ACTGAACATCTCAT-A
73977759 TGTGGCCGATG-CATGTCCCAAACAT-GTCTTACACTAG
1 -GT---CGATGCCATGTCCCAAACATGGTCTTACACTAG
73977796 GAGACATGTC
Statistics
Matches: 149, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
139 6 0.04
140 2 0.01
141 2 0.01
142 41 0.28
143 52 0.35
144 35 0.23
145 1 0.01
146 6 0.04
147 4 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (140 bp):
GTCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCACACATCGAGCCGATGCCATGTCCCAG
ACATGGTCATACACTGTCTCTCACATATCGCCCGATGCCATGTCCCAAACATGGTCTTACACTGA
ACATCTCATA
Found at i:73982292 original size:38 final size:38
Alignment explanation
Indices: 73982238--73982399 Score: 263
Period size: 38 Copynumber: 4.3 Consensus size: 38
73982228 GCATGATATT
*
73982238 TGGAACATATCTGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
73982276 TGGAACATATCCGGACTTGAGGTCTGCAGGCTACGTGC
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
73982314 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGT
1 TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
73982352 TGGAAACATATCCAGACCTGAGGTCCGCAGGCTACGTGC
1 TGG-AACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
73982391 TGGAA-ATAT
1 TGGAACATAT
73982400 ATTCGGGCCT
Statistics
Matches: 116, Mismatches: 7, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
37 4 0.03
38 77 0.66
39 35 0.30
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.23
Consensus pattern (38 bp):
TGGAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:73984882 original size:43 final size:44
Alignment explanation
Indices: 73984818--73984990 Score: 155
Period size: 43 Copynumber: 4.0 Consensus size: 44
73984808 CATAGGATTT
* * *
73984818 TCGATATGTGCTCTCGTGTAAGACCACGTCTAGGA-AGTTGGCA
1 TCGATATGTGATTTCGAGTAAGACCACGTCTAGGACAGTTGGCA
* * *
73984861 TTGATATGTGATTTCGAGTAAGACCATGTCTAGGACA-TCGGCA
1 TCGATATGTGATTTCGAGTAAGACCACGTCTAGGACAGTTGGCA
* *
73984904 TCG-TAATTGTGA-TTCGTGTAAGACC-CTGTCTGGGACAG-TGGCA
1 TCGAT-A-TGTGATTTCGAGTAAGACCAC-GTCTAGGACAGTTGGCA
* * *
73984947 TCGACATGTGATTAC-ATGTAAGACCACGTCTGGGAC-GTTGGCA
1 TCGATATGTGATTTCGA-GTAAGACCACGTCTAGGACAGTTGGCA
73984990 T
1 T
73984991 TGTATGATAT
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 7 0.07
43 92 0.87
44 7 0.07
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (44 bp):
TCGATATGTGATTTCGAGTAAGACCACGTCTAGGACAGTTGGCA
Found at i:73991213 original size:47 final size:47
Alignment explanation
Indices: 73991004--73991771 Score: 1267
Period size: 47 Copynumber: 16.2 Consensus size: 47
73990994 TTTAGGATTC
*
73991004 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
73991051 TATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
73991099 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
73991148 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991195 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991242 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
*
73991291 TATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991338 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991385 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
73991434 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991481 TATGTGCTAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
73991527 TATGTGATAAGGCCTAATGGCCG-TGTGAT-AATGTGAAAGTGTATATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
73991574 TATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991620 TATGTGATAAGGCCCAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
73991667 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* * * * * * *
73991714 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991761 AATGTGATAAG
1 TATGTGATAAG
73991772 TCCCGAAGGG
Statistics
Matches: 683, Mismatches: 25, Indels: 26
0.93 0.03 0.04
Matches are distributed among these distances:
45 17 0.02
46 85 0.12
47 383 0.56
48 34 0.05
49 164 0.24
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:73991223 original size:96 final size:94
Alignment explanation
Indices: 73991004--73991771 Score: 1267
Period size: 96 Copynumber: 8.1 Consensus size: 94
73990994 TTTAGGATTC
*
73991004 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
73991069 -GCCGATGTGATGAATGTGAAAGTGTATATA
66 GGCCGATGTGATGAATGTGAAAGTG--TATA
73991099 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
73991164 ATGGCCGATGTGATGAATGTGAAAGTGTATA
64 ATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991195 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991260 AGCCGATGTGATGAATGTGAAAGTGTATATA
66 GGCCGATGTGATGAATGTGAAAGTG--TATA
*
73991291 TATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991356 GGCCGATGTGATAAATGTGAAAGTGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATA
*
73991385 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTA
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTA
73991450 ATGGCCGATGTGATGAATGTGAAAGTGTATA
64 ATGGCCGATGTGATGAATGTGAAAGTGTATA
*
73991481 TATGTGCTAAGGCCTAATGGCCGATGTGATG-ATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
73991545 GGCCG-TGTGAT-AATGTGAAAGTGTATATA
66 GGCCGATGTGATGAATGTGAAAGTG--TATA
*
73991574 TATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCCAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
73991638 GGCCGATGTGATGAATGTGAAAGTGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATA
* * * *
73991667 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* * *
73991732 GGCCAACGTGATGGATGTGAAAGTGTATA
66 GGCCGATGTGATGAATGTGAAAGTGTATA
*
73991761 AATGTGATAAG
1 TATGTGATAAG
73991772 TCCCGAAGGG
Statistics
Matches: 638, Mismatches: 22, Indels: 27
0.93 0.03 0.04
Matches are distributed among these distances:
91 12 0.02
92 16 0.03
93 111 0.17
94 173 0.27
95 65 0.10
96 215 0.34
97 22 0.03
98 24 0.04
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (94 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATGAATGTGAAAGTGTATA
Found at i:73991303 original size:143 final size:143
Alignment explanation
Indices: 73991004--73991771 Score: 1316
Period size: 143 Copynumber: 5.4 Consensus size: 143
73990994 TTTAGGATTC
*
73991004 TATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991069 -GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
66 GGCCGATGTGATAAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
73991133 GTGAAAGTGTATATA
129 GTGAAAGTGTATATA
73991148 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991213 GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
66 GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
73991278 GAAAGTGTATATA
131 GAAAGTGTATATA
*
73991291 TATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991356 GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
66 GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
73991421 GAAAGTGTATATA
131 GAAAGTGTATATA
*
73991434 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGCTAAGGCCTAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991499 GGCCGATGTGAT-GATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG-TGTGAT-AATGT
66 GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
73991561 GAAAGTGTATATA
131 GAAAGTGTATATA
*
73991574 TATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCCAAT
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
73991638 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
66 GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
73991703 GAAAGTG--TATA
131 GAAAGTGTATATA
* * * * * * * *
73991714 TATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
73991772 TCCCGAAGGG
Statistics
Matches: 600, Mismatches: 19, Indels: 13
0.95 0.03 0.02
Matches are distributed among these distances:
139 54 0.09
140 96 0.16
141 45 0.08
142 49 0.08
143 269 0.45
144 64 0.11
145 23 0.04
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (143 bp):
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATA
Found at i:73991947 original size:37 final size:37
Alignment explanation
Indices: 73991890--73991968 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
73991880 CCGAGCTCTA
* * *
73991890 AAGACCCGATGACTATGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
73991927 AAGACCCGATAACT-TCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTAT-GTGTGGAGATTATGTCCGGGT
73991964 AAGAC
1 AAGAC
73991969 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
36 1 0.03
37 37 0.97
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGAGATTATGTCCGGGT
Found at i:73993824 original size:50 final size:50
Alignment explanation
Indices: 73993749--73993849 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
73993739 ATTTTTCCAC
*
73993749 ACTTAGATTATAATTTTGAAATAATGTTTGCATATGAGTGACTTATCAAT
1 ACTTAGATTAAAATTTTGAAATAATGTTTGCATATGAGTGACTTATCAAT
73993799 ACTTAGATTAAAATTTTGAAATAATGTTTGCATATGAGTGACTTATCAAT
1 ACTTAGATTAAAATTTTGAAATAATGTTTGCATATGAGTGACTTATCAAT
73993849 A
1 A
73993850 AAAGGAGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.41
Consensus pattern (50 bp):
ACTTAGATTAAAATTTTGAAATAATGTTTGCATATGAGTGACTTATCAAT
Found at i:73999499 original size:40 final size:40
Alignment explanation
Indices: 73999455--73999718 Score: 485
Period size: 40 Copynumber: 6.6 Consensus size: 40
73999445 GCTACTTGCT
*
73999455 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
73999495 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
73999535 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
73999575 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
73999615 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
73999655 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
73999695 CAAATGCCTTTGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
73999719 AATTAGTCAC
Statistics
Matches: 218, Mismatches: 6, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
39 10 0.05
40 208 0.95
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74007496 original size:40 final size:40
Alignment explanation
Indices: 74007452--74007759 Score: 512
Period size: 40 Copynumber: 7.7 Consensus size: 40
74007442 GCTACTTGCT
74007452 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74007492 CAAATGCCTTCGAGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
74007532 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
74007572 CAAATGCCTTCGGGACTGAGCCCGATTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
74007612 CAAATGCCTTCGGAACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
74007652 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
** * *
74007692 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
74007731 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
74007760 CATCCGAATA
Statistics
Matches: 249, Mismatches: 16, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
38 2 0.01
39 32 0.13
40 213 0.86
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:74021523 original size:43 final size:43
Alignment explanation
Indices: 74021473--74021635 Score: 166
Period size: 43 Copynumber: 3.8 Consensus size: 43
74021463 CTTATCGAGA
* *
74021473 TGTGATTACATGTAATACCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* ** * *
74021516 TATGATTACGCGTAAGACCATGCCTGAGACATTGGCATCGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * * * * *
74021559 TGTGATTTCGTGTAAGACCCTGTCTAGGATAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
* * *
74021601 ATGTGATAACATGTAAGACCATATCTGGGATATTG
1 -TGTGATTACATGTAAGACCATGTCTGGGACATTG
74021636 CATTGTACGA
Statistics
Matches: 96, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
42 2 0.02
43 94 0.98
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.33
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT
Found at i:74027932 original size:22 final size:23
Alignment explanation
Indices: 74027910--74027961 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
74027900 ATGTTTTTAC
74027910 TTTTATTCTACTTTAAGACTACT
1 TTTTATTCTACTTTAAGACTACT
* *
74027933 TTTTATTTTTCTTTAAG-CTTA-T
1 TTTTATTCTACTTTAAGAC-TACT
74027955 TTTTATT
1 TTTTATT
74027962 AGGTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.21, C:0.12, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTCTACTTTAAGACTACT
Found at i:74031494 original size:34 final size:34
Alignment explanation
Indices: 74031451--74031516 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
74031441 TGGTAAAAAG
*
74031451 ATGGTAAGATTATGTATCTGGAAGTTAGGTGAAA
1 ATGGTAAGATTATGCATCTGGAAGTTAGGTGAAA
*
74031485 ATGGTAAGATTATGCATTTGGAAGTTAGGTGA
1 ATGGTAAGATTATGCATCTGGAAGTTAGGTGA
74031517 GAAAGGTTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.33, C:0.03, G:0.30, T:0.33
Consensus pattern (34 bp):
ATGGTAAGATTATGCATCTGGAAGTTAGGTGAAA
Found at i:74032824 original size:137 final size:138
Alignment explanation
Indices: 74032572--74032846 Score: 335
Period size: 137 Copynumber: 2.0 Consensus size: 138
74032562 AGTTATAAAA
* * * *
74032572 TGGGTCTGCCCACACAAGCTGTTAGTCAGAATGTGAGCTATATGATGCTGCTCACACAAGCTGTT
1 TGGGTCTGCCCACACAAGCTGTCAGTCAAAATGTGAGCTATAGGATGCTGCTCACACAAGCTGTC
* * * * *
74032637 GAGTATCCACAACTAATGCCGGACCTCAGCCATCGATAGGACATTTAAGACCAACACCAGAAACA
66 AAGTAACCACAACTAATGCCGGAACTCAGCCACCGATAGGACATTCAAGACCAACACCAGAAACA
74032702 -TGGTAACC
131 CT-GTAACC
* *
74032710 TGGGTCTGCTCACACAAGCTGTCGGTCAAAATGT-AGCTATACGGA-GCTGCTCACACAAG-TGT
1 TGGGTCTGCCCACACAAGCTGTCAGTCAAAATGTGAGCTATA-GGATGCTGCTCACACAAGCTGT
** * * *
74032772 CAAGTAACTGCAAC-ACATGCCGGAAACTCAGCCACCGGTTGGACATTCAAGACCAACACCTGAA
65 CAAGTAACCACAACTA-ATGCCGG-AACTCAGCCACCGATAGGACATTCAAGACCAACACCAGAA
74032836 ACACTGTAACC
128 ACACTGTAACC
74032847 CTAATGACAT
Statistics
Matches: 117, Mismatches: 16, Indels: 9
0.82 0.11 0.06
Matches are distributed among these distances:
135 1 0.01
136 19 0.16
137 64 0.55
138 33 0.28
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.20
Consensus pattern (138 bp):
TGGGTCTGCCCACACAAGCTGTCAGTCAAAATGTGAGCTATAGGATGCTGCTCACACAAGCTGTC
AAGTAACCACAACTAATGCCGGAACTCAGCCACCGATAGGACATTCAAGACCAACACCAGAAACA
CTGTAACC
Found at i:74035154 original size:30 final size:30
Alignment explanation
Indices: 74035118--74035175 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
74035108 TTTGAGATTT
74035118 GGGGC-AAATGTGTAAATATGCAAAAGTTTA
1 GGGGCAAAAT-TGTAAATATGCAAAAGTTTA
* *
74035148 GGGGCAAAATTGTAATTTTGCAAAAGTT
1 GGGGCAAAATTGTAAATATGCAAAAGTT
74035176 AGAGTTAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (30 bp):
GGGGCAAAATTGTAAATATGCAAAAGTTTA
Found at i:74037792 original size:13 final size:13
Alignment explanation
Indices: 74037774--74037798 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74037764 AGTTTCTTCT
74037774 GTACTCATTAATA
1 GTACTCATTAATA
74037787 GTACTCATTAAT
1 GTACTCATTAAT
74037799 TTCATAGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (13 bp):
GTACTCATTAATA
Found at i:74046130 original size:3 final size:3
Alignment explanation
Indices: 74046115--74046149 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
74046105 AAGAATTGAT
*
74046115 AGA AGA GAGA AGA AGA AGA AGA AAA AGA AGA AGA A
1 AGA AGA -AGA AGA AGA AGA AGA AGA AGA AGA AGA A
74046150 AACGTCAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:74046399 original size:8 final size:8
Alignment explanation
Indices: 74046386--74046414 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
74046376 AACAAAGAAC
74046386 CTCCAACA
1 CTCCAACA
74046394 CTCCAACA
1 CTCCAACA
74046402 CTCCAACA
1 CTCCAACA
74046410 CTCCA
1 CTCCA
74046415 CTTAACTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.34, C:0.52, G:0.00, T:0.14
Consensus pattern (8 bp):
CTCCAACA
Found at i:74048577 original size:48 final size:47
Alignment explanation
Indices: 74048502--74048606 Score: 156
Period size: 48 Copynumber: 2.2 Consensus size: 47
74048492 AGGTGGAAGA
* * *
74048502 ATGTGGTAGTATATTTGCAAAAGTGGTGGCCTGTCCACAAATTTGATT
1 ATGTGGCAGTATATCTACAAAAGTGGTGGCCTGTCCAC-AATTTGATT
* *
74048550 ATGTGGCAGTATATCTACAAAATTGGTGGCTTGTCCACAATTTGATT
1 ATGTGGCAGTATATCTACAAAAGTGGTGGCCTGTCCACAATTTGATT
74048597 ATGTGGCAGT
1 ATGTGGCAGT
74048607 TTATTCGCAT
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
47 19 0.37
48 33 0.63
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (47 bp):
ATGTGGCAGTATATCTACAAAAGTGGTGGCCTGTCCACAATTTGATT
Found at i:74054991 original size:6 final size:6
Alignment explanation
Indices: 74054961--74055022 Score: 56
Period size: 6 Copynumber: 10.2 Consensus size: 6
74054951 AAGAAACATT
* * *
74054961 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A
74055011 A-CAGA ATCAGA A
1 ATCAGA ATCAGA A
74055023 CGTGAATGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
5 3 0.07
6 37 0.82
7 4 0.09
8 1 0.02
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:74064156 original size:49 final size:49
Alignment explanation
Indices: 74064100--74064331 Score: 304
Period size: 49 Copynumber: 4.7 Consensus size: 49
74064090 CTAGTACGCA
* *
74064100 TAGTAGCCTGCACTTAGTACTACACATGAGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
74064149 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * *
74064199 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAT-CGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCG-GTACACG
* *
74064250 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
74064299 TAGTAGTCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
74064332 TCACAATAGA
Statistics
Matches: 156, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
49 69 0.44
50 51 0.33
51 36 0.23
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:74064273 original size:101 final size:98
Alignment explanation
Indices: 74064100--74064330 Score: 302
Period size: 100 Copynumber: 2.3 Consensus size: 98
74064090 CTAGTACGCA
* * * *
74064100 TAGTAGCCTGCACTTAGTACTACACATGAGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCCTGCACTTA
* *
74064165 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
*
74064199 TAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTAT-CGAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CAAA-TTATCCG-GTACACATAGTAGCCTGCAC
* ** *
74064263 TTAGTACTACACATGCGACCAATTATCCGGTACACG
63 TTAGTACTACACACGCGACCAACCATCCGATACACG
* *
74064299 TAGTAGTCTACACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
74064331 CTCACAATAG
Statistics
Matches: 116, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
99 30 0.26
100 46 0.40
101 40 0.34
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACAAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:74069355 original size:49 final size:49
Alignment explanation
Indices: 74069296--74069475 Score: 245
Period size: 49 Copynumber: 3.7 Consensus size: 49
74069286 AGCTATCTGG
* * *
74069296 TACACATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGT
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGA
* * **
74069345 TACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA-CCTGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCC-GA
74069395 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGA
1 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGA
* * *
74069444 TACACGTAGTAACCTACACTTAATACTACACA
1 TACACGTAGTAGCCTGCACTTAGTACTACACA
74069476 CGTGAACTCA
Statistics
Matches: 114, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
49 71 0.62
50 43 0.38
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGA
Found at i:74069471 original size:99 final size:99
Alignment explanation
Indices: 74069296--74069480 Score: 316
Period size: 99 Copynumber: 1.9 Consensus size: 99
74069286 AGCTATCTGG
* * * *
74069296 TACACATAGTAGCTTGCACTTAGTACTACACATGCGACCAATTATCCGTTACACGTAGTAGCCTG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAACCTA
*
74069361 CACTTAGTACTACACACGTGACCTAACCACCTGA
66 CACTTAATACTACACACGTGACCTAACCACCTGA
*
74069395 TACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAACCTA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAACCTA
74069460 CACTTAATACTACACACGTGA
66 CACTTAATACTACACACGTGA
74069481 ACTCACAATA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 80 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.25
Consensus pattern (99 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAACCTA
CACTTAATACTACACACGTGACCTAACCACCTGA
Found at i:74077836 original size:53 final size:53
Alignment explanation
Indices: 74077733--74077939 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
74077723 TTCCTTTTTA
* * * ** *
74077733 AACTAACCATTGCCATGTCTTGACATGGTCTTATGTGGTATCCTTCCCTTATG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
* * * * * *
74077786 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAACG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTT-ATG
** * * * * * * *
74077840 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCGTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
* *
74077895 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
74077940 AAACCCTAAT
Statistics
Matches: 119, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 42 0.35
54 38 0.32
55 39 0.33
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
Found at i:74078322 original size:27 final size:26
Alignment explanation
Indices: 74078274--74078325 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74078264 GTGAGGCTGC
*
74078274 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
74078300 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
74078326 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74078627 original size:27 final size:27
Alignment explanation
Indices: 74078571--74078756 Score: 221
Period size: 27 Copynumber: 6.9 Consensus size: 27
74078561 GGGTAAAATG
* * * * *
74078571 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
74078597 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74078624 GTAATTCTACCCTACTGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
74078651 GTATTTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
74078678 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
74078705 GTATTTTTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
74078732 GTAATTCTACCCTACAGGGGTATTT
1 GTAATTCTACCCTACAGGGGTATTT
74078757 TAGGAATTTT
Statistics
Matches: 137, Mismatches: 22, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 14 0.10
27 123 0.90
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.37
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:74078672 original size:54 final size:54
Alignment explanation
Indices: 74078601--74078759 Score: 246
Period size: 54 Copynumber: 2.9 Consensus size: 54
74078591 ATCTCGGTAA
* *
74078601 TTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTACTGGGGTATTTTAGTAT
1 TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAT
* * **
74078655 TTCTACCCTACAAGGGTATTTTAGTAATTCTACCTTACAGGGGTATTTCGGTAT
1 TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAT
* *
74078709 TTTTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAG
1 TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAG
74078760 GAATTTTATA
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 93 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (54 bp):
TTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTTAGTAT
Found at i:74078791 original size:27 final size:28
Alignment explanation
Indices: 74078761--74078834 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 28
74078751 GTATTTTAGG
74078761 AATTTTATAAATCGAGGGTAAAATT-GT
1 AATTTTATAAATCGAGGGTAAAATTGGT
* * * **
74078788 AATTCTGTAAATCAAGGGT-ACTTTGGT
1 AATTTTATAAATCGAGGGTAAAATTGGT
* *
74078815 AATTTTACAAGTCGAGGGTA
1 AATTTTATAAATCGAGGGTA
74078835 TTTCAATAAT
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
26 3 0.09
27 32 0.91
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (28 bp):
AATTTTATAAATCGAGGGTAAAATTGGT
Found at i:74078844 original size:27 final size:27
Alignment explanation
Indices: 74078814--74078891 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
74078804 GGTACTTTGG
74078814 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* * *
74078841 TAATTTTACAGGTCGAGGGTATTTTAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
74078868 TAATTTCACAAATC-AGGGGTATTT
1 TAATTTTACAAGTCGA-GGGTATTT
74078892 TGGTAATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
26 1 0.02
27 43 0.98
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:74078892 original size:27 final size:26
Alignment explanation
Indices: 74078857--74079059 Score: 253
Period size: 27 Copynumber: 7.5 Consensus size: 26
74078847 TACAGGTCGA
* *
74078857 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAA-CAG
*
74078884 GGGTATTTTGGTAATTTTAGAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
*
74078911 GGGTATTTTGATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
74078938 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
* *
74078965 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAAC-AG
*
74078992 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAA-CAG
** *
74079019 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAAC-AG
74079046 GGGTATTTTGGTAA
1 GGGTATTTTGGTAA
74079060 ACTAAAGTAT
Statistics
Matches: 157, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
26 2 0.01
27 154 0.98
28 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:74078915 original size:81 final size:80
Alignment explanation
Indices: 74078796--74079035 Score: 268
Period size: 81 Copynumber: 3.0 Consensus size: 80
74078786 GTAATTCTGT
* * * * * * **
74078796 AAATCAAGGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTCGA-GGG
1 AAATCAGGGGTATTTTGGTAATTTTAAAACTAG-GGGTATTTTAATAATTTTACA-AACGAGGGG
74078860 TATTTTAGTAATTTCAC
64 TATTTTAGTAATTTCAC
* *
74078877 AAATCAGGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTGATAATTTTACAAACTAGGGGT
1 AAATCAGGGGTATTTTGGTAATTTTA-AAACTAGGGGTATTTTAATAATTTTACAAACGAGGGGT
* *
74078942 ATTTTGGTAATTTTAC
65 ATTTTAGTAATTTCAC
* * * *
74078958 AAA-CTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGG
1 AAATC-AGGGGTATTTTGGTAATTTTA-AAACTAGGGGTATTTTAATAATTTTACAAACGAGGGG
*
74079022 TATTTTGGTAATTT
64 TATTTTAGTAATTT
74079036 TGTAAACTAA
Statistics
Matches: 138, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
80 3 0.02
81 131 0.95
82 4 0.03
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (80 bp):
AAATCAGGGGTATTTTGGTAATTTTAAAACTAGGGGTATTTTAATAATTTTACAAACGAGGGGTA
TTTTAGTAATTTCAC
Found at i:74079036 original size:81 final size:81
Alignment explanation
Indices: 74078857--74079059 Score: 293
Period size: 81 Copynumber: 2.5 Consensus size: 81
74078847 TACAGGTCGA
* * * *
74078857 GGGTATTTTAGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTAGAAACTAGGGGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTAGAAACAAAGGGTATTTTG
*
74078921 ATAATTTTACAAACTAG
65 ATAATTTTACAAACCAG
*
74078938 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-A
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAGAAACAAAGGGTATTTTGA
74079002 GTAATTTTACAAACCAG
66 -TAATTTTACAAACCAG
** *
74079019 GGGTATTTTGGTAATTTTGTAAACTAAGGGTATTTTGGTAA
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAA
74079060 ACTAAAGTAT
Statistics
Matches: 111, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
80 1 0.01
81 109 0.98
82 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.22, T:0.40
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTAGAAACAAAGGGTATTTTGA
TAATTTTACAAACCAG
Found at i:74079069 original size:18 final size:18
Alignment explanation
Indices: 74079032--74079070 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
74079022 TATTTTGGTA
*
74079032 ATTTTGTAAACTAAGGGT
1 ATTTTGTAAACTAAGAGT
74079050 ATTTTGGTAAACTAA-AGT
1 ATTTT-GTAAACTAAGAGT
74079068 ATT
1 ATT
74079071 CTAAACAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.41
Consensus pattern (18 bp):
ATTTTGTAAACTAAGAGT
Found at i:74081024 original size:6 final size:6
Alignment explanation
Indices: 74081013--74081091 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
74081003 TATCAGAGCT
* * *
74081013 AGAATC AGAATC AGAATT AGAATC AG-GTGAC AGATTC AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* *
74081062 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
74081092 GTGAATGCAA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
5 3 0.05
6 47 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:74081025 original size:18 final size:18
Alignment explanation
Indices: 74081004--74081038 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
74080994 AAGAAACATT
*
74081004 ATCAGAGCTAGAATCAGA
1 ATCAGAACTAGAATCAGA
*
74081022 ATCAGAATTAGAATCAG
1 ATCAGAACTAGAATCAG
74081039 GTGACAGATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.14, G:0.20, T:0.20
Consensus pattern (18 bp):
ATCAGAACTAGAATCAGA
Found at i:74081052 original size:31 final size:31
Alignment explanation
Indices: 74081013--74081091 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
74081003 TATCAGAGCT
* *
74081013 AGAATCAGAATCAGAATTAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
* *
74081044 AGATTCAGAATCAGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGAATCAGAATCAGGTAAC
*
74081075 AGAATCAAAATCAGAAT
1 AGAATCAGAATCAGAAT
74081092 GTGAATGCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.47, C:0.14, G:0.19, T:0.20
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTAAC
Found at i:74081258 original size:27 final size:26
Alignment explanation
Indices: 74081210--74081269 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
74081200 GCGAGGCTGC
* *
74081210 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCACA-A
* * *
74081237 CAGATATTGTGGCTAGGCCACCACAA
1 CAGATATTGTGACGAAGCCACCACAA
74081263 CAGATAT
1 CAGATAT
74081270 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCACAA
Found at i:74082559 original size:13 final size:13
Alignment explanation
Indices: 74082541--74082580 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
74082531 GCTCGACAGG
74082541 GACACGCCCGTGT
1 GACACGCCCGTGT
74082554 GACACGCCCGTGT
1 GACACGCCCGTGT
*
74082567 GACATGCCCGTGT
1 GACACGCCCGTGT
74082580 G
1 G
74082581 CGACAACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.15, C:0.35, G:0.33, T:0.17
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:74084300 original size:35 final size:35
Alignment explanation
Indices: 74084261--74084383 Score: 140
Period size: 35 Copynumber: 3.5 Consensus size: 35
74084251 GATATATTGG
*
74084261 ACTTGTATCTTTGGCCACATGTGATGTTATAATAA
1 ACTTGTATATTTGGCCACATGTGATGTTATAATAA
* * * * *
74084296 ACTTGAATATTTGACTACATGTGATGTTTTAATAT
1 ACTTGTATATTTGGCCACATGTGATGTTATAATAA
* *
74084331 ACTTGTATATTTGGCCATATGTGATGATATAATGAA
1 ACTTGTATATTTGGCCACATGTGATGTTATAAT-AA
*
74084367 CCTTG-AGTATTTGGCCA
1 ACTTGTA-TATTTGGCCA
74084384 TACAAGTAAG
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
35 57 0.79
36 15 0.21
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (35 bp):
ACTTGTATATTTGGCCACATGTGATGTTATAATAA
Found at i:74087941 original size:53 final size:53
Alignment explanation
Indices: 74087884--74088026 Score: 198
Period size: 53 Copynumber: 2.7 Consensus size: 53
74087874 ACCCTCATAA
* *
74087884 GGTAAAATGACCAAATACCCTTATAAGGTAAAATGAATGTAATACCCCTGTAG
1 GGTAAAATGACCTAATACCCTTGTAAGGTAAAATGAATGTAATACCCCTGTAG
* * * *
74087937 GGTAAAATGACTTAATA-CCTCTGTAGGGTAAAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACCTAATACCCT-TGTAAGGTAAAATGAATGTAATACCCCTGTAG
*
74087990 GGTAAAATGACTGTAATACCCTTGTAAGGTAAAATGA
1 GGTAAAATGAC-CTAATACCCTTGTAAGGTAAAATGA
74088027 CTGATTTGCC
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
52 3 0.04
53 54 0.68
54 19 0.24
55 3 0.04
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (53 bp):
GGTAAAATGACCTAATACCCTTGTAAGGTAAAATGAATGTAATACCCCTGTAG
Found at i:74088038 original size:27 final size:27
Alignment explanation
Indices: 74087884--74088029 Score: 199
Period size: 27 Copynumber: 5.5 Consensus size: 27
74087874 ACCCTCATAA
** * *
74087884 GGTAAAATGAC-CAAATACCCTTATAA
1 GGTAAAATGACTGTAATACCCTTGTAG
* *
74087910 GGTAAAATGAATGTAATACCCCTGTAG
1 GGTAAAATGACTGTAATACCCTTGTAG
74087937 GGTAAAATGACT-TAATA-CCTCTGTAG
1 GGTAAAATGACTGTAATACCCT-TGTAG
74087963 GGTAAAATGACTGTAATACCCTTGTAG
1 GGTAAAATGACTGTAATACCCTTGTAG
*
74087990 GGTAAAATGACTGTAATACCCTTGTAA
1 GGTAAAATGACTGTAATACCCTTGTAG
74088017 GGTAAAATGACTG
1 GGTAAAATGACTG
74088030 ATTTGCCCTA
Statistics
Matches: 107, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
25 2 0.02
26 32 0.30
27 70 0.65
28 3 0.03
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCTTGTAG
Found at i:74088213 original size:36 final size:36
Alignment explanation
Indices: 74088173--74088243 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
74088163 GTGCTGATAT
* * *
74088173 GGTTGCACGTGTCGCCTAAGCCAACTGTGGACCTAA
1 GGTTGCACGAGTCGCCCAAGACAACTGTGGACCTAA
* **
74088209 GGTTGCATGAGTTTCCCAAGACAACTGTGGACCTA
1 GGTTGCACGAGTCGCCCAAGACAACTGTGGACCTA
74088244 CTGATGGCTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (36 bp):
GGTTGCACGAGTCGCCCAAGACAACTGTGGACCTAA
Found at i:74093971 original size:31 final size:30
Alignment explanation
Indices: 74093933--74093996 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 30
74093923 CTTTTTCATA
74093933 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAG-CT
**
74093964 TTTCATATTTCATATTACTGGGCCGAAGCT
1 TTTCATATTTCATAACACTGGGCCGAAGCT
74093994 TTT
1 TTT
74093997 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (30 bp):
TTTCATATTTCATAACACTGGGCCGAAGCT
Found at i:74094264 original size:23 final size:23
Alignment explanation
Indices: 74094209--74094304 Score: 165
Period size: 23 Copynumber: 4.1 Consensus size: 23
74094199 CCTAGCCTCT
*
74094209 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74094232 TATTAATAACTGGGGCATAAGCCC
1 T-TTAATAACTGGGGCATAAGCCC
*
74094256 TTTAATAACTAGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74094279 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
74094302 TTT
1 TTT
74094305 TACACTTCCT
Statistics
Matches: 69, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
23 47 0.68
24 22 0.32
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:74094380 original size:20 final size:20
Alignment explanation
Indices: 74094355--74094421 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
74094345 TTGTGATTCC
74094355 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
74094375 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74094395 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
74094415 ACCATGT
1 ATCATGT
74094422 TTATCAAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:74094386 original size:11 final size:11
Alignment explanation
Indices: 74094355--74094410 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
74094345 TTGTGATTCC
74094355 ATCATGTGCAT
1 ATCATGTGCAT
*
74094366 ATCA--TACAT
1 ATCATGTGCAT
74094375 ATCATGTGCAT
1 ATCATGTGCAT
*
74094386 ATCA--TACAT
1 ATCATGTGCAT
*
74094395 GTCATGTGCAT
1 ATCATGTGCAT
74094406 ATCAT
1 ATCAT
74094411 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:74094486 original size:25 final size:25
Alignment explanation
Indices: 74094458--74094505 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74094448 ATACATAAAC
* * *
74094458 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
74094483 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
74094506 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:74102069 original size:30 final size:29
Alignment explanation
Indices: 74102033--74102090 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
74102023 CCTTTTCATA
74102033 TTTCATATTTCATAACACTGGGCCGAAGCT
1 TTTCATATTTCATAACACT-GGCCGAAGCT
**
74102063 TTTCATATTTCATATTACTGGCCGAAGC
1 TTTCATATTTCATAACACTGGCCGAAGC
74102091 CTTTACTGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (29 bp):
TTTCATATTTCATAACACTGGCCGAAGCT
Found at i:74102347 original size:23 final size:23
Alignment explanation
Indices: 74102299--74102397 Score: 166
Period size: 22 Copynumber: 4.3 Consensus size: 23
74102289 CTCGAGGCCT
74102299 AGCCTCTTTAATAACTGGGGCA-A
1 AGCC-CTTTAATAACTGGGGCATA
74102322 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
*
74102345 AG-CCTTTAATAACTAGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
74102367 AGCCCTTTAATAACTGGGGCATA
1 AGCCCTTTAATAACTGGGGCATA
74102390 AGCCCTTT
1 AGCCCTTT
74102398 TACACTTCCT
Statistics
Matches: 72, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
22 38 0.53
23 34 0.47
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.27
Consensus pattern (23 bp):
AGCCCTTTAATAACTGGGGCATA
Found at i:74102381 original size:45 final size:44
Alignment explanation
Indices: 74102304--74102393 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 44
74102294 GGCCTAGCCT
*
74102304 CTTTAATAACTGGGGCAAAGCCCTTTAATAACTGGGGCATAAGC
1 CTTTAATAACTAGGGCAAAGCCCTTTAATAACTGGGGCATAAGC
74102348 CTTTAATAACTAGGGCATAAGCCCTTTAATAACTGGGGCATAAGC
1 CTTTAATAACTAGGGCA-AAGCCCTTTAATAACTGGGGCATAAGC
74102393 C
1 C
74102394 CTTTTACACT
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 16 0.36
45 28 0.64
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (44 bp):
CTTTAATAACTAGGGCAAAGCCCTTTAATAACTGGGGCATAAGC
Found at i:74102474 original size:20 final size:20
Alignment explanation
Indices: 74102449--74102487 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
74102439 TGTGATTACA
74102449 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
74102469 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
74102488 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:74102493 original size:20 final size:20
Alignment explanation
Indices: 74102450--74102494 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
74102440 GTGATTACAT
**
74102450 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
74102470 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
74102490 CATGT
1 CATGT
74102495 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:74106217 original size:21 final size:22
Alignment explanation
Indices: 74106175--74106218 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
74106165 CTATTCCTAA
* *
74106175 GGTTCAAATGGGATTTTTCCTC
1 GGTTCAAACGGGATTGTTCCTC
74106197 GGTTCAAACGGGA-TGTTCCTC
1 GGTTCAAACGGGATTGTTCCTC
74106218 G
1 G
74106219 CCTATTAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.34
Consensus pattern (22 bp):
GGTTCAAACGGGATTGTTCCTC
Found at i:74110634 original size:49 final size:49
Alignment explanation
Indices: 74110465--74110788 Score: 414
Period size: 49 Copynumber: 6.5 Consensus size: 49
74110455 TGAGGTCGCA
* * ** * *
74110465 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
74110516 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
*
74110566 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * **
74110615 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
*
74110665 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
74110714 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* * *
74110763 TGTATAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74110789 GGCATACCAG
Statistics
Matches: 240, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
49 119 0.50
50 89 0.37
51 32 0.13
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:74110646 original size:99 final size:99
Alignment explanation
Indices: 74110465--74110788 Score: 488
Period size: 99 Copynumber: 3.3 Consensus size: 99
74110455 TGAGGTCGCA
* * ** * **
74110465 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGCCACGTGTGTAGTACTAAG
74110530 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
64 TGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
74110566 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACGTGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACGTGTGTAGTACTAAGTG
74110631 CAGGCTACTACGTGTATCAGATGGTTAGGTCACG
66 CAGGCTACTACGTGTATCAGATGGTTAGGTCACG
74110665 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACGTGTGTAGTACTAAGTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACGTGTGTAGTACTAAGTG
* ** * *
74110730 CAGGCTACTACGTGTATCGGATAATT-GGTCGCA
66 CAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * *
74110763 TGTATAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
74110789 GGCATACCAG
Statistics
Matches: 208, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
98 28 0.13
99 144 0.69
100 1 0.00
101 35 0.17
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACGTGTGTAGTACTAAGTG
CAGGCTACTACGTGTATCAGATGGTTAGGTCACG
Found at i:74110800 original size:148 final size:149
Alignment explanation
Indices: 74110511--74110800 Score: 429
Period size: 148 Copynumber: 2.0 Consensus size: 149
74110501 AAAACTGTGA
* ** *
74110511 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGCCACGTGTGTAGTAC
* *
74110576 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACGTGTGTAGTACTAAGTGCAGGCTACTA
66 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACATGTATAGTACTAAGTGCAGGCTACTA
** *
74110641 CGTGTATCAGATGGTTAGG
131 CGCATACCAGATGGTTAGG
*
74110660 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGCCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGCCACGTGTGTAGTAC
* * * * *
74110724 TAAGTGCAGGCTACTACGTGTATCGGATAATTGGTCGCATGTATAGTACTATGTGTAGGCTACTA
66 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACATGTATAGTACTAAGTGCAGGCTACTA
*
74110789 GGCATACCAGAT
131 CGCATACCAGAT
74110801 AGCTTTGGCT
Statistics
Matches: 125, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
148 82 0.66
149 43 0.34
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (149 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGCCACGTGTGTAGTAC
TAAGTGCAGGCTACTACGTGTACCGGATAATTGGCCACATGTATAGTACTAAGTGCAGGCTACTA
CGCATACCAGATGGTTAGG
Found at i:74116300 original size:21 final size:21
Alignment explanation
Indices: 74116259--74116307 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
74116249 ATCGATAAAA
*
74116259 TCAGCTTGTAGAGTTTATGTT
1 TCAGCTCGTAGAGTTTATGTT
74116280 TCAGCTCGTAGAG-TTATTGTT
1 TCAGCTCGTAGAGTTTA-TGTT
*
74116301 TTAGCTC
1 TCAGCTC
74116308 ATGAGCTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.18, C:0.14, G:0.22, T:0.45
Consensus pattern (21 bp):
TCAGCTCGTAGAGTTTATGTT
Found at i:74117607 original size:27 final size:27
Alignment explanation
Indices: 74117577--74117632 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
74117567 TTGTGTCATG
* *
74117577 TGAAATTGAATG-GCAATTATTGTTACA
1 TGAAA-TGAATGTGAAATTATTATTACA
*
74117604 TGAAATGAATGTTAAATTATTATTACA
1 TGAAATGAATGTGAAATTATTATTACA
74117631 TG
1 TG
74117633 GGTTGTATGA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.24
27 19 0.76
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (27 bp):
TGAAATGAATGTGAAATTATTATTACA
Found at i:74123381 original size:27 final size:27
Alignment explanation
Indices: 74123340--74123393 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
74123330 TGTCATGTGA
* *
74123340 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
74123367 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
74123394 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:74142391 original size:27 final size:25
Alignment explanation
Indices: 74142352--74142437 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 25
74142342 AGTTGCTAGA
*
74142352 ACAGTAAGTGTGGCAAAGCCACCAGT
1 ACAGTAA-TGTGGCATAGCCACCAGT
74142378 ATCAGTAATTGTGGCATAGCCACCAGT
1 A-CAGTAA-TGTGGCATAGCCACCAGT
* *
74142405 AACAGTGAATGTGACATAGTCACCAGT
1 -ACAGT-AATGTGGCATAGCCACCAGT
74142432 ACAGTA
1 ACAGTA
74142438 CTTCCTCCAT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
25 1 0.02
26 6 0.11
27 43 0.81
28 3 0.06
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (25 bp):
ACAGTAATGTGGCATAGCCACCAGT
Found at i:74142603 original size:27 final size:27
Alignment explanation
Indices: 74142573--74142772 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
74142563 GGGCATAATC
* * * *
74142573 GTCATTTTACCATACATGGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
*
74142600 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
74142627 GTTATTTTACCCTGCAGGGCCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
74142654 ATCATTTTACCCAACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
74142681 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
74142708 GTCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
74142735 GTCATTTTACCCTATAGAGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
74142762 GTCATTTTACC
1 GTCATTTTACC
74142773 TACTTCGGGG
Statistics
Matches: 151, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.24, C:0.23, G:0.20, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:74145182 original size:28 final size:28
Alignment explanation
Indices: 74145142--74145207 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
74145132 ACAGCGCATG
* *
74145142 CAGTAACAGTCTGGGCCTTAGCCCTATA
1 CAGTAACAGTCTGGGCCTAAGCCCAATA
74145170 CAGTAACAGTCTGGGCCTAAGCCCAATA
1 CAGTAACAGTCTGGGCCTAAGCCCAATA
*
74145198 CAGTATCAGT
1 CAGTAACAGT
74145208 ACAGTGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTCTGGGCCTAAGCCCAATA
Found at i:74145402 original size:27 final size:27
Alignment explanation
Indices: 74145362--74145428 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
74145352 TAGCTGCCCA
74145362 AACAGTAAGA-GTGGCAAAGCCACCAGT
1 AACAGTAA-ATGTGGCAAAGCCACCAGT
* * *
74145389 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAAATGTGGCAAAGCCACCAGT
74145416 AACAGTAAATGTG
1 AACAGTAAATGTG
74145429 ACGTAGTCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.19
Consensus pattern (27 bp):
AACAGTAAATGTGGCAAAGCCACCAGT
Found at i:74145439 original size:27 final size:27
Alignment explanation
Indices: 74145362--74145448 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
74145352 TAGCTGCCCA
* *
74145362 AACAGTAAGA-GTGGCAAAGCCACCAGT
1 AACAGTAA-ATGTGACATAGCCACCAGT
* * *
74145389 ATCAGTAATTGTGGCATAGCCACCAGT
1 AACAGTAAATGTGACATAGCCACCAGT
* *
74145416 AACAGTAAATGTGACGTAGTCACCAGT
1 AACAGTAAATGTGACATAGCCACCAGT
74145443 -ACAGTA
1 AACAGTA
74145449 CTTCCTCCAT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
26 6 0.12
27 45 0.88
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.20
Consensus pattern (27 bp):
AACAGTAAATGTGACATAGCCACCAGT
Found at i:74145614 original size:27 final size:27
Alignment explanation
Indices: 74145596--74145756 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
74145586 CATTTTATGA
* * *
74145596 TACAGGGGTACTACGGTCATTTTACCT
1 TACAGGGGCATTACGGTCATTTTACCC
* * *
74145623 TATAGGGGTATTATGGTCATTTTACCC
1 TACAGGGGCATTACGGTCATTTTACCC
*
74145650 TACAGGGGCATTACGGTCGTTTTACCC
1 TACAGGGGCATTACGGTCATTTTACCC
* *
74145677 TACAGGGGCATTACGGTCATTTTGCAC
1 TACAGGGGCATTACGGTCATTTTACCC
* *
74145704 TACAAGGGCATTACGGTCATTTTACCA
1 TACAGGGGCATTACGGTCATTTTACCC
** *
74145731 TACAGAAGCATTATGGTCATTTTACC
1 TACAGGGGCATTACGGTCATTTTACC
74145757 TACTTTGGGG
Statistics
Matches: 115, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (27 bp):
TACAGGGGCATTACGGTCATTTTACCC
Found at i:74149959 original size:16 final size:16
Alignment explanation
Indices: 74149938--74149995 Score: 56
Period size: 15 Copynumber: 3.9 Consensus size: 16
74149928 CATTTCATAA
74149938 TCATTTCTCATATTTT
1 TCATTTCTCATATTTT
*
74149954 TCATTTC-AATATTTT
1 TCATTTCTCATATTTT
74149969 CTCA--TCTCATA---T
1 -TCATTTCTCATATTTT
74149981 TCATTTCTCATATTT
1 TCATTTCTCATATTT
74149996 ACCATTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 14
0.67 0.04 0.29
Matches are distributed among these distances:
11 3 0.09
12 1 0.03
13 7 0.21
14 2 0.06
15 10 0.30
16 10 0.30
ACGTcount: A:0.22, C:0.21, G:0.00, T:0.57
Consensus pattern (16 bp):
TCATTTCTCATATTTT
Found at i:74149979 original size:43 final size:43
Alignment explanation
Indices: 74149923--74150008 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
74149913 TCATATTTCA
* **
74149923 TTTCTCATTTCATAATCATTTCTCATATTTTTCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTACCATTTCAATAT
*
74149966 TTTCTCATCTCATATTCATTTCTCATATTTACCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTACCATTTCAATAT
74150009 CAATCACATA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.53
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTACCATTTCAATAT
Found at i:74152403 original size:19 final size:19
Alignment explanation
Indices: 74152367--74152406 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
74152357 TTCCATGAGA
*
74152367 TTCTTCTCTCTTTCTTTCT
1 TTCTTCTCTCTTTATTTCT
* *
74152386 TTCTTTTCTTTTTATTTCT
1 TTCTTCTCTCTTTATTTCT
74152405 TT
1 TT
74152407 TCTAATTCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.75
Consensus pattern (19 bp):
TTCTTCTCTCTTTATTTCT
Found at i:74152681 original size:25 final size:25
Alignment explanation
Indices: 74152653--74152703 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
74152643 TGGGACCACA
74152653 AATCTGAAGTCATAAAATTTATTTT
1 AATCTGAAGTCATAAAATTTATTTT
*
74152678 AATCTGAGGTCATAAAATTTATTTT
1 AATCTGAAGTCATAAAATTTATTTT
74152703 A
1 A
74152704 GTATTATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (25 bp):
AATCTGAAGTCATAAAATTTATTTT
Found at i:74156122 original size:55 final size:54
Alignment explanation
Indices: 74155997--74156176 Score: 209
Period size: 55 Copynumber: 3.3 Consensus size: 54
74155987 GGGTTTAAGA
* * *
74155997 ATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTACAAGGCAAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
* * * * * * *
74156051 AAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAAG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGT-AAGTTCTATAAGGCAAGG
* * * * *
74156106 ATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTC-ATAAGGCGAGG
1 ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
74156159 ATACCATGTAAGACCATG
1 ATACCATGTAAGACCATG
74156177 TTAAGACACG
Statistics
Matches: 102, Mismatches: 23, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
53 26 0.25
54 33 0.32
55 43 0.42
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (54 bp):
ATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGCAAGG
Found at i:74166480 original size:29 final size:29
Alignment explanation
Indices: 74166438--74166493 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
74166428 GATAATCTAT
*
74166438 AAAATAGGGAAAGAACACACAAAGTAAAC
1 AAAATAAGGAAAGAACACACAAAGTAAAC
74166467 AAAATAAGGAAAGAACACACAAAGTAA
1 AAAATAAGGAAAGAACACACAAAGTAA
74166494 GCTTTAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.64, C:0.12, G:0.16, T:0.07
Consensus pattern (29 bp):
AAAATAAGGAAAGAACACACAAAGTAAAC
Found at i:74169259 original size:16 final size:18
Alignment explanation
Indices: 74169232--74169270 Score: 64
Period size: 17 Copynumber: 2.3 Consensus size: 18
74169222 CTTTCATAAA
74169232 AAAAAGGAAAAAGAAA-T
1 AAAAAGGAAAAAGAAAGT
74169249 AAAAAGG-AAAAGAAAGT
1 AAAAAGGAAAAAGAAAGT
74169266 AAAAA
1 AAAAA
74169271 AAACAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.38
17 13 0.62
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (18 bp):
AAAAAGGAAAAAGAAAGT
Found at i:74169303 original size:23 final size:24
Alignment explanation
Indices: 74169251--74169296 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
74169241 AAAGAAATAA
* *
74169251 AAAGGAAAAGAAAGTAAAAAAAAC
1 AAAGAAAAAGAAAATAAAAAAAAC
74169275 AAAGAAAAAGAAAATAAAAAAA
1 AAAGAAAAAGAAAATAAAAAAA
74169297 TAGAGAAGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.80, C:0.02, G:0.13, T:0.04
Consensus pattern (24 bp):
AAAGAAAAAGAAAATAAAAAAAAC
Found at i:74169420 original size:19 final size:19
Alignment explanation
Indices: 74169383--74169421 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
74169373 GTTTTTAATC
*
74169383 ATTTAATACTTTTTTAAAA
1 ATTTAATACTTTTTAAAAA
74169402 ATTTATATAC-TTTTAAAAA
1 ATTTA-ATACTTTTTAAAAA
74169421 A
1 A
74169422 AGATTCTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTTAATACTTTTTAAAAA
Found at i:74169421 original size:20 final size:19
Alignment explanation
Indices: 74169383--74169422 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
74169373 GTTTTTAATC
**
74169383 ATTTAATACTTTTTTAAAA
1 ATTTAATACTTTTAAAAAA
74169402 ATTTATATACTTTTAAAAAA
1 ATTTA-ATACTTTTAAAAAA
74169422 A
1 A
74169423 GATTCTATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTTAATACTTTTAAAAAA
Found at i:74169707 original size:23 final size:24
Alignment explanation
Indices: 74169676--74169723 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
74169666 TTGCCTTTTT
*
74169676 TATAATTTTT-AATTTTTTTAAAA
1 TATAATTTTTAAAATTTTTTAAAA
*
74169699 TATATTTTTTAAAATTTTTTAAAA
1 TATAATTTTTAAAATTTTTTAAAA
74169723 T
1 T
74169724 GATTTTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATAATTTTTAAAATTTTTTAAAA
Found at i:74169728 original size:23 final size:23
Alignment explanation
Indices: 74169681--74169729 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
74169671 TTTTTTATAA
* *
74169681 TTTTTAATTTTTTTAAAATATAT
1 TTTTTAAATTTTTTAAAATAGAT
74169704 TTTTTAAAATTTTTTAAAAT-GAT
1 TTTTT-AAATTTTTTAAAATAGAT
74169727 TTT
1 TTT
74169730 CATTATTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (23 bp):
TTTTTAAATTTTTTAAAATAGAT
Found at i:74172450 original size:57 final size:59
Alignment explanation
Indices: 74172382--74172496 Score: 171
Period size: 59 Copynumber: 2.0 Consensus size: 59
74172372 TTAACTAGCT
* * *
74172382 GGTGACCAAAAAAT-AAAA-ACCATAAATAAGTGGCTATTTTATAACTTTTCATAGTTA
1 GGTGACAAAAAAATAAAAAGACCATAAATAAGTGACCATTTTATAACTTTTCATAGTTA
* *
74172439 GGTGACAAAAAAATAAAAAGACCATAATTGAGTGACCATTTTATAACTTTTCATAGTT
1 GGTGACAAAAAAATAAAAAGACCATAAATAAGTGACCATTTTATAACTTTTCATAGTT
74172497 GAGTGGCCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 13 0.25
58 4 0.08
59 34 0.67
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.31
Consensus pattern (59 bp):
GGTGACAAAAAAATAAAAAGACCATAAATAAGTGACCATTTTATAACTTTTCATAGTTA
Found at i:74173449 original size:2 final size:2
Alignment explanation
Indices: 74173442--74173473 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
74173432 CTGGAAAATT
*
74173442 TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
74173474 AAGCAAAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:74183934 original size:14 final size:15
Alignment explanation
Indices: 74183914--74183944 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
74183904 AATGCTGGCG
*
74183914 AAAAAAATGACAAAC
1 AAAAAAATGAAAAAC
74183929 AAAAAAATGAAAAAC
1 AAAAAAATGAAAAAC
74183944 A
1 A
74183945 TCCAGTCAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.10, G:0.06, T:0.06
Consensus pattern (15 bp):
AAAAAAATGAAAAAC
Found at i:74204976 original size:28 final size:28
Alignment explanation
Indices: 74204925--74204979 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 28
74204915 ACAAGGGTTT
74204925 TCACACGGCCTGACACACGCCCGTGTCCC
1 TCACACGGCCTGA-ACACGCCCGTGTCCC
74204954 TCACACGGCCATG-ACACGCCCGTGTC
1 TCACACGGCC-TGAACACGCCCGTGTC
74204980 TTAGCCCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 13 0.52
29 10 0.40
30 2 0.08
ACGTcount: A:0.18, C:0.45, G:0.22, T:0.15
Consensus pattern (28 bp):
TCACACGGCCTGAACACGCCCGTGTCCC
Found at i:74205104 original size:30 final size:30
Alignment explanation
Indices: 74205068--74205136 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
74205058 CGTGGCCAAA
74205068 GGCCGTGTCCTCCTCACAACTGAGACACAC
1 GGCCGTGTCCTCCTCACAACTGAGACACAC
74205098 GGCCGTGTCCTCCTCACAACTGAGACACAC
1 GGCCGTGTCCTCCTCACAACTGAGACACAC
74205128 GGCCGTGTC
1 GGCCGTGTC
74205137 TTTGTCCGTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.20, C:0.39, G:0.23, T:0.17
Consensus pattern (30 bp):
GGCCGTGTCCTCCTCACAACTGAGACACAC
Found at i:74206368 original size:48 final size:48
Alignment explanation
Indices: 74206301--74206514 Score: 217
Period size: 48 Copynumber: 4.6 Consensus size: 48
74206291 AAGCTGACGC
* *
74206301 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
* ** *
74206349 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCT-GATG
* * * *
74206395 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
* * * * * *
74206443 CATGTCCCAAACATGTCTTACACTGGCTCT-CATA-AT-ATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCAAGGCTGATG
74206489 CATGTCCCA-ACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74206515 ACACATATCA
Statistics
Matches: 141, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
45 17 0.12
46 51 0.36
47 4 0.03
48 68 0.48
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCTGATG
Found at i:74206409 original size:46 final size:47
Alignment explanation
Indices: 74206112--74206514 Score: 228
Period size: 49 Copynumber: 8.6 Consensus size: 47
74206102 ATGCCGACGC
* *
74206112 CATGTCCCA-ACATGGTCTTACACT-G-GCTAGCA-CATCAAAGTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTA-CATC-TCAATGTCGATG
* * * * * * * *
74206158 TCATGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCT-ACATCTCAATGTCGATG
* * * * * *
74206207 CCGTATCCCAGACAGGTCTTACACTGGCTCT-CATCTATCAGTGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACATC--TCAATGTCGATG
* * * *
74206256 CCATGTCCCAGACAGGTCTTACACT-G-AC-AC-TCAACAA-G-CTGACG
1 -CATGTCCCAGACATGTCTTACACTAGCTCTACATC-TCAATGTC-GATG
* * * * *
74206300 CCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGA-GGCTGATG
1 -CATGTCCCAGACATGTCTTACACTAGC-TCTACATCTCAATGTC-GATG
*
74206349 CATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAATGTCGATG
* * * *
74206395 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATG
1 CATGTCCCAGACATGTCTTACACTAGCT-CTACATCTCAATGTCGATG
* * * *
74206443 CATGTCCCAAACATGTCTTACACTGGCTCT-CA--TAATATGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCA-AT-GTCGATG
74206489 CATGTCCCA-ACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74206515 ACACATATCA
Statistics
Matches: 286, Mismatches: 50, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
43 1 0.00
44 31 0.11
45 22 0.08
46 53 0.19
47 29 0.10
48 74 0.26
49 75 0.26
50 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCTCAATGTCGATG
Found at i:74206418 original size:94 final size:94
Alignment explanation
Indices: 74206301--74206514 Score: 290
Period size: 94 Copynumber: 2.3 Consensus size: 94
74206291 AAGCTGACGC
* * * *
74206301 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAAGGCTGATGCATGTCCCAAACATGTC
* * *
74206366 TTACACTAGCTCTCGT-CTCAAT-GTCGATG
66 TTACACTAGCTCTCATAAT--ATGGCCGATG
* * *
74206395 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAAGGCTGATGCATGTCCCAAACATGTC
*
74206460 TTACACTGGCTCTCATAATATGGCCGATG
66 TTACACTAGCTCTCATAATATGGCCGATG
74206489 CATGTCCCA-ACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
74206515 ACACATATCA
Statistics
Matches: 106, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
93 18 0.17
94 87 0.82
95 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.30
Consensus pattern (94 bp):
CATGTCCCAGACATGTCTTACACTAGCTGGTATATCTCAAGGCTGATGCATGTCCCAAACATGTC
TTACACTAGCTCTCATAATATGGCCGATG
Found at i:74206447 original size:142 final size:140
Alignment explanation
Indices: 74206102--74206514 Score: 398
Period size: 142 Copynumber: 2.9 Consensus size: 140
74206092 ATGGGATAAG
* * * *
74206102 ATGCCGACGCCATGTCCCA-ACATGGTCTTACACTGGCTAGCACATC-AAAGTCGATGTCATGTC
1 ATGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCT-G-A-ATCTCAAGTTGATGCCATGTC
* * * *
74206165 CCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCGTATCCCAGACAGGTCTTACA
62 CCAGACAGGTCTTACACTAGCTTT-ATATATCGAGGCCGATG-CATGTCCCAGACATGTCTTACA
*
74206230 CTGGCTCTCATCTATCA
125 CTAGCTCTCATC-ATCA
* * * * * * *
74206247 GTGCCGATGCCATGTCCCAGACAGGTCTTACACTGAC--ACTCAACAAGCTGACGCCATGTCCCA
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTGAATC-TCAAGTTGATGCCATGTCCCA
* *
74206310 GACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATGTCTTACACTAG
65 GACAGGTCTTACACTAGCTT-TATATATCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAG
*
74206375 CTCTCGTC-TCA
129 CTCTCATCATCA
*
74206386 ATGTCGATG-CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATG-CATGTC
1 ATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCT-G-A-ATCTCAA-GTTGATGCCATGTC
* * * *
74206449 CCAAACATGTCTTACACTGGCTCTCATA-AT--ATGGCCGATGCATGTCCCA-ACATGTCTTACA
62 CCAGACAGGTCTTACACTAGCT-TTATATATCGA-GGCCGATGCATGTCCCAGACATGTCTTACA
74206510 CTAGC
125 CTAGC
74206515 ACACATATCA
Statistics
Matches: 224, Mismatches: 32, Indels: 30
0.78 0.11 0.10
Matches are distributed among these distances:
138 25 0.11
139 28 0.12
140 18 0.08
141 31 0.14
142 81 0.36
143 9 0.04
145 29 0.13
146 3 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (140 bp):
ATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTGAATCTCAAGTTGATGCCATGTCCCAG
ACAGGTCTTACACTAGCTTTATATATCGAGGCCGATGCATGTCCCAGACATGTCTTACACTAGCT
CTCATCATCA
Found at i:74206540 original size:94 final size:93
Alignment explanation
Indices: 74206301--74206540 Score: 207
Period size: 94 Copynumber: 2.6 Consensus size: 93
74206291 AAGCTGACGC
* **** * * * * * *
74206301 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTCGAGGCTGATGCATGTCCCAGACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCACACATATCCCAATGTTCATGCATGTCCCAAACATGTC
* * *
74206366 TTACACTAGCTCTCGTCTCAATGTCGATG
66 TTACACTAGCTCTCATAT-AATGCCGATG
* **** * *
74206395 CATGTCCCAGACATGTCTTACACTGGCTGGTATATCTCAATGTTGATGCATGTCCCAAACATGTC
1 CATGTCCCAGACATGTCTTACACTAGCACACATATCCCAATGTTCATGCATGTCCCAAACATGTC
*
74206460 TTACACTGGCTCTCATA-ATATGGCCGATG
66 TTACACTAGCTCTCATATA-AT-GCCGATG
*
74206489 CATGTCCCA-ACATGTCTTACACTAGCACACATATCACCCATG-TCATGGCATG
1 CATGTCCCAGACATGTCTTACACTAGCACACATATC-CCAATGTTCAT-GCATG
74206541 AATATTCGGA
Statistics
Matches: 123, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
92 1 0.01
93 26 0.21
94 96 0.78
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCACACATATCCCAATGTTCATGCATGTCCCAAACATGTC
TTACACTAGCTCTCATATAATGCCGATG
Found at i:74212942 original size:14 final size:14
Alignment explanation
Indices: 74212923--74212951 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74212913 TAATGTATTT
74212923 AATTTATATTACAA
1 AATTTATATTACAA
74212937 AATTTATATTACAA
1 AATTTATATTACAA
74212951 A
1 A
74212952 GTTTGTTCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATATTACAA
Found at i:74220250 original size:15 final size:15
Alignment explanation
Indices: 74220230--74220262 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
74220220 CATTCAATCA
*
74220230 AAATTTTTAATTTTT
1 AAATTTTAAATTTTT
74220245 AAATTTTAAA-TTTT
1 AAATTTTAAATTTTT
74220259 AAAT
1 AAAT
74220263 GTTGAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
AAATTTTAAATTTTT
Found at i:74245635 original size:14 final size:14
Alignment explanation
Indices: 74245616--74245644 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
74245606 TGGAACAAAC
74245616 TTTGTAATATAAAT
1 TTTGTAATATAAAT
74245630 TTTGTAATATAAAT
1 TTTGTAATATAAAT
74245644 T
1 T
74245645 AAATACATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTGTAATATAAAT
Found at i:74248616 original size:19 final size:19
Alignment explanation
Indices: 74248592--74248628 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
74248582 GTTACTAACA
*
74248592 TAAAAACTTTCAAATATAT
1 TAAAAAATTTCAAATATAT
*
74248611 TAAAAAATTTTAAATATA
1 TAAAAAATTTCAAATATA
74248629 ACATTCGCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAAAAATTTCAAATATAT
Found at i:74252176 original size:94 final size:93
Alignment explanation
Indices: 74252069--74252470 Score: 319
Period size: 94 Copynumber: 4.3 Consensus size: 93
74252059 TATGTGTGCT
* * *
74252069 AGTGTAAGACATGTTTGGGACATGCATCGGCCATATTATGAGAGCCAGTGTAAGACATGTTTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTA-TATGAGAGCCAGTGTAAGACATGTCTGGG
*
74252134 ACATGCATCAACATTGAGATATACCAGCC
65 ACATGCATCAACATTGAGATATACAAGCC
* * * * *
74252163 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTT-ATATGAGAGCCAGTGTAAGACATGTCTGGG
* * * *
74252228 ACATGCATCAGCCTCGAGATATACAAGCT
65 ACATGCATCAACATTGAGATATACAAGCC
* * * * * * *
74252257 AGTGTAAGACCTGTCTGGGACATGGCGTCAG-CTTGT-TGAGTGTCAGTGTAAGACCTGTCTGGG
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTATATGAGAGCCAGTGTAAGACATGTCTGGG
** * * * *
74252320 ACATGGCATCGGCACTGATAGATGA-GAGCC
65 ACAT-GCATCAACATTGAGATAT-ACAAGCC
* * * * ** *
74252350 AGTGTAAGACCTGTCTGGGATACGGCATCGGCCTCGATATATGAAAGTTAGTGTAAGACCTGTCT
1 AGTGTAAGACATGTCTGGGACA-TGCATCGGCCT---TATATGAGAGCCAGTGTAAGACATGTCT
* * * * *
74252415 GGGACATGACATCGAC-TT-TGATGTGCTAGCC
62 GGGACATG-CATCAACATTGAGATATACAAGCC
*
74252446 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
74252471 GCGTCGGCAT
Statistics
Matches: 242, Mismatches: 53, Indels: 24
0.76 0.17 0.08
Matches are distributed among these distances:
92 26 0.11
93 41 0.17
94 106 0.44
95 5 0.02
96 16 0.07
97 14 0.06
98 34 0.14
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTATATGAGAGCCAGTGTAAGACATGTCTGGGA
CATGCATCAACATTGAGATATACAAGCC
Found at i:74252182 original size:48 final size:48
Alignment explanation
Indices: 74252111--74252280 Score: 218
Period size: 48 Copynumber: 3.6 Consensus size: 48
74252101 ATATTATGAG
* *
74252111 AGCCAGTGTAAGACATGTTTGGGACATGCATCAACATTGAGATATACC
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACA
* ** *
74252159 AGCCAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGA-CGA-G
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACA
* * * *
74252205 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACA
* *
74252253 AGCTAGTGTAAGACCTGTCTGGGACATG
1 AGCCAGTGTAAGACATGTCTGGGACATG
74252281 GCGTCAGCTT
Statistics
Matches: 106, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
46 37 0.35
47 2 0.02
48 67 0.63
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCAACATTGAGATATACA
Found at i:74252377 original size:49 final size:49
Alignment explanation
Indices: 74252159--74252478 Score: 189
Period size: 49 Copynumber: 6.7 Consensus size: 49
74252149 GAGATATACC
* * * * * * *
74252159 AGCCAGTGTAAGACATGTCTGGGACA-TGCATCGACATTG--AGACGAG
1 AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAGATGAA
* * * * * *
74252205 AGCTAGTGTAAGACATGTCTGGGACA-TGCATCAGCCTCGAGATAT-ACA
1 AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAGATGA-A
* * * * * *
74252253 AGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAG-CT---T-GTTGAG
1 AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAGATGAA
* * * *
74252297 TGTCAGTGTAAGACCTGTCTGGGACATGGCATCGGCACT-GATAGATGAG
1 AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGC-CTCGATAGATGAA
* *
74252346 AGCCAGTGTAAGACCTGTCTGGGATACGGCATCGGCCTCGATATATGAA
1 AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAGATGAA
** * * * * * **
74252395 AGTTAGTGTAAGACCTGTCTGGGACATGACATCGACTTTGAT-G-TGCT
1 AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAGATGAA
* * *
74252442 AGCCAGTGTAAGACCATGTTTGGGACATGGCGTCGGC
1 AGCCAGTGTAAGACC-TGTCTGGGACACGGCATCGGC
74252479 ATCTTATCCC
Statistics
Matches: 218, Mismatches: 44, Indels: 22
0.77 0.15 0.08
Matches are distributed among these distances:
44 31 0.14
45 1 0.00
46 36 0.17
47 16 0.07
48 49 0.22
49 85 0.39
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (49 bp):
AGCCAGTGTAAGACCTGTCTGGGACACGGCATCGGCCTCGATAGATGAA
Found at i:74252384 original size:142 final size:138
Alignment explanation
Indices: 74252162--74252422 Score: 371
Period size: 142 Copynumber: 1.9 Consensus size: 138
74252152 ATATACCAGC
* *
74252162 CAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 CAGTGTAAGACATGTCTGGGACATGCATCGACACTGAGACGAGAGCCAGTGTAAGACATGTCTGG
*
74252227 GACATGCATCAGCCTCGAGATAT-ACAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTT
66 GACAGGCATCAGCCTCGAGATATGA-AAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTT
74252291 GTTGAGTGT
130 GTTGAGTGT
* * * *
74252300 CAGTGTAAGACCTGTCTGGGACATGGCATCGGCACTGATAGATGAGAGCCAGTGTAAGACCTGTC
1 CAGTGTAAGACATGTCTGGGACAT-GCATCGACACTG--AGACGAGAGCCAGTGTAAGACATGTC
* * * *
74252365 TGGGATACGGCATCGGCCTCGATATATGAAAGTTAGTGTAAGACCTGTCTGGGACATG
63 TGGGACA-GGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTGGGACATG
74252423 ACATCGACTT
Statistics
Matches: 107, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
138 23 0.21
139 10 0.09
141 29 0.27
142 44 0.41
143 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (138 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGACACTGAGACGAGAGCCAGTGTAAGACATGTCTGG
GACAGGCATCAGCCTCGAGATATGAAAGCTAGTGTAAGACCTGTCTGGGACATGGCGTCAGCTTG
TTGAGTGT
Found at i:74253490 original size:30 final size:30
Alignment explanation
Indices: 74253454--74253522 Score: 138
Period size: 30 Copynumber: 2.3 Consensus size: 30
74253444 CACGGACAAA
74253454 GACACGGCCGTGTGTCTCAGTTGTGAGGAG
1 GACACGGCCGTGTGTCTCAGTTGTGAGGAG
74253484 GACACGGCCGTGTGTCTCAGTTGTGAGGAG
1 GACACGGCCGTGTGTCTCAGTTGTGAGGAG
74253514 GACACGGCC
1 GACACGGCC
74253523 TTTGGCCACG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.17, C:0.23, G:0.39, T:0.20
Consensus pattern (30 bp):
GACACGGCCGTGTGTCTCAGTTGTGAGGAG
Found at i:74253652 original size:28 final size:28
Alignment explanation
Indices: 74253612--74253666 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 28
74253602 CACGGGCTAA
74253612 GACACGGGC-GTGTCATGGCCGTGTGAGG
1 GACACGGGCGGTGTCA-GGCCGTGTGAGG
74253640 GACACGGGCGTGTGTCAGGCCGTGTGA
1 GACACGGGCG-GTGTCAGGCCGTGTGA
74253667 AAACCCTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
28 9 0.36
29 10 0.40
30 6 0.24
ACGTcount: A:0.15, C:0.22, G:0.45, T:0.18
Consensus pattern (28 bp):
GACACGGGCGGTGTCAGGCCGTGTGAGG
Found at i:74255087 original size:21 final size:20
Alignment explanation
Indices: 74255063--74255104 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
74255053 GACTAAATCG
74255063 AAAAC-TCAAAGAATTTTTCAA
1 AAAACATCAAA-AA-TTTTCAA
*
74255084 AAAACATTAAAAATTTTCAA
1 AAAACATCAAAAATTTTCAA
74255104 A
1 A
74255105 GCTGCAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 8 0.42
21 7 0.37
22 4 0.21
ACGTcount: A:0.57, C:0.12, G:0.02, T:0.29
Consensus pattern (20 bp):
AAAACATCAAAAATTTTCAA
Found at i:74258143 original size:22 final size:22
Alignment explanation
Indices: 74258117--74258158 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
74258107 TTGCATTTTG
74258117 GATGA-AATAGAGTCAACATCAT
1 GATGAGAA-AGAGTCAACATCAT
74258139 GATGAGAAAGAGTCAACATC
1 GATGAGAAAGAGTCAACATC
74258159 TCGACGACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (22 bp):
GATGAGAAAGAGTCAACATCAT
Found at i:74259755 original size:20 final size:20
Alignment explanation
Indices: 74259724--74259776 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 20
74259714 AAAAATATAA
*
74259724 ATTTTGGAATTTTTATAAATT
1 ATTTT-GAATTTTTAAAAATT
74259745 ATTTTGAA-TTTTAAAAATT
1 ATTTTGAATTTTTAAAAATT
74259764 ATTTTGAATTTTT
1 ATTTTGAATTTTT
74259777 TAATTGTTGT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 18 0.60
20 7 0.23
21 5 0.17
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
ATTTTGAATTTTTAAAAATT
Found at i:74269729 original size:40 final size:39
Alignment explanation
Indices: 74269631--74269852 Score: 198
Period size: 40 Copynumber: 5.6 Consensus size: 39
74269621 TCCTCATTCA
* * * *
74269631 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
74269670 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
74269709 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * * *
74269749 AAAGGCATTCGGGGCTTAACCCGGAATTT-GTATCT-GCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
74269788 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
74269829 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
74269853 CAGCATTCAA
Statistics
Matches: 154, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
38 5 0.03
39 57 0.37
40 81 0.53
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:74269812 original size:79 final size:79
Alignment explanation
Indices: 74269629--74269813 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 79
74269619 GCTCCTCATT
* * * *
74269629 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCATTCGGGACATAACCCGGA
74269694 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * * * *
74269708 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCATTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCATTCGGGACATAACCCGG
* *
74269773 AATTT-GTATCT-GCA
65 -ATTTAATAACTCGCA
*
74269787 CAAATGCCTTC-GGATCTTAGTCCGGAT
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT
74269814 ATATTCACTT
Statistics
Matches: 88, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
78 3 0.03
79 58 0.66
80 23 0.26
81 4 0.05
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCATTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:74269861 original size:41 final size:41
Alignment explanation
Indices: 74269784--74269861 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
74269774 ATTTGTATCT
* * *
74269784 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
74269825 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
74269862 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:74275055 original size:9 final size:9
Alignment explanation
Indices: 74275041--74275157 Score: 108
Period size: 9 Copynumber: 12.3 Consensus size: 9
74275031 ATGTATTAGT
74275041 TAAGTTATG
1 TAAGTTATG
74275050 TAAGTTGTTATG
1 TAA---GTTATG
*
74275062 TACGTTATG
1 TAAGTTATG
*
74275071 TGAGTTATG
1 TAAGTTATG
*
74275080 TAAATTATG
1 TAAGTTATG
74275089 TAAGTTATG
1 TAAGTTATG
*
74275098 TGAGTTATG
1 TAAGTTATG
74275107 TAAGTTGTTATG
1 TAA---GTTATG
*
74275119 TAAATTATG
1 TAAGTTATG
*
74275128 TAAGTTATA
1 TAAGTTATG
* *
74275137 TGAGTTATA
1 TAAGTTATG
74275146 TAAGTTATG
1 TAAGTTATG
74275155 TAA
1 TAA
74275158 TTTTTTAAGA
Statistics
Matches: 88, Mismatches: 14, Indels: 12
0.77 0.12 0.11
Matches are distributed among these distances:
9 71 0.81
12 17 0.19
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:74275088 original size:39 final size:38
Alignment explanation
Indices: 74275045--74275157 Score: 110
Period size: 39 Copynumber: 3.0 Consensus size: 38
74275035 ATTAGTTAAG
74275045 TTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAA
1 TTATGTAAGTTGTTATGTA-GTTATGTGAGTTATGTAAA
*
74275084 TTATGTAA---GTTATGTGAGTTATGTAAGTTGTTATGTAAA
1 TTATGTAAGTTGTTATGT-AGTTATGT--G-AGTTATGTAAA
* * *
74275123 TTATGTAAGTT-ATATG-AGTTATATAAGTTATGTAA
1 TTATGTAAGTTGTTATGTAGTTATGTGAGTTATGTAA
74275158 TTTTTTAAGA
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
36 23 0.37
37 1 0.02
38 1 0.02
39 33 0.53
41 4 0.06
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (38 bp):
TTATGTAAGTTGTTATGTAGTTATGTGAGTTATGTAAA
Found at i:74275134 original size:57 final size:57
Alignment explanation
Indices: 74275043--74275155 Score: 163
Period size: 57 Copynumber: 2.0 Consensus size: 57
74275033 GTATTAGTTA
** * * *
74275043 AGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATGTG
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATATAAGTTATGTG
* *
74275100 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATATAAGTTATGT
1 AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATATAAGTTATGT
74275156 AATTTTTTAA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
57 49 1.00
ACGTcount: A:0.31, C:0.01, G:0.22, T:0.46
Consensus pattern (57 bp):
AGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATATAAGTTATGTG
Found at i:74276382 original size:17 final size:17
Alignment explanation
Indices: 74276360--74276401 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
74276350 CCTAACACAT
74276360 GAATTTAGATTTTTGTC
1 GAATTTAGATTTTTGTC
74276377 GAATTTAGATTTTTGTC
1 GAATTTAGATTTTTGTC
74276394 GAATTTAG
1 GAATTTAG
74276402 TACTTAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.50
Consensus pattern (17 bp):
GAATTTAGATTTTTGTC
Found at i:74278208 original size:24 final size:24
Alignment explanation
Indices: 74278176--74278245 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
74278166 CTAACCAAAG
74278176 CATATTATAATACAATTTTCATAA
1 CATATTATAATACAATTTTCATAA
**
74278200 CATATTATAAATA-AGATAGT-ATAA
1 CATATTAT-AATACA-ATTTTCATAA
*
74278224 CATTATTATAATACGATTTTCA
1 CA-TATTATAATACAATTTTCA
74278246 CAGTCACAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
24 22 0.61
25 14 0.39
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (24 bp):
CATATTATAATACAATTTTCATAA
Found at i:74278845 original size:24 final size:24
Alignment explanation
Indices: 74278813--74278858 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
74278803 TTGTATTTGT
74278813 AAACAGAGACTTAGAAATTAAAAG
1 AAACAGAGACTTAGAAATTAAAAG
74278837 AAACAGAGACTTAGAAATTAAA
1 AAACAGAGACTTAGAAATTAAA
74278859 GTTACCTGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.59, C:0.09, G:0.15, T:0.17
Consensus pattern (24 bp):
AAACAGAGACTTAGAAATTAAAAG
Found at i:74279589 original size:41 final size:41
Alignment explanation
Indices: 74279501--74279595 Score: 106
Period size: 41 Copynumber: 2.3 Consensus size: 41
74279491 AACTCAAATA
* ** *
74279501 TTTGCGGCG-TTTTTTTTAAAACGCCGGTATAGGTCAACTT
1 TTTGTGGCGTTTTTTTTTAAAACGCCACTATAGCTCAACTT
*
74279541 TTAGTGGCGTTTTTTTATTATAAACGCCACTATAGCTC-A-TT
1 TTTGTGGCGTTTTTTT-TTA-AAACGCCACTATAGCTCAACTT
74279582 TTTGTGGCGTTTTT
1 TTTGTGGCGTTTTT
74279596 GAAAAAAACA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
40 7 0.15
41 21 0.46
42 4 0.09
43 14 0.30
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (41 bp):
TTTGTGGCGTTTTTTTTTAAAACGCCACTATAGCTCAACTT
Found at i:74279783 original size:7 final size:7
Alignment explanation
Indices: 74279767--74279869 Score: 50
Period size: 7 Copynumber: 14.6 Consensus size: 7
74279757 ATTCCAAAAT
*
74279767 TAAACAC
1 TAAACCC
74279774 TAAACCC
1 TAAACCC
74279781 TAAACTCC
1 TAAAC-CC
74279789 -AAACCC
1 TAAACCC
*
74279795 CAAATCCC
1 TAAA-CCC
74279803 -AAACCC
1 TAAACCC
* *
74279809 CAAACCA
1 TAAACCC
74279816 TAAACCC
1 TAAACCC
* * **
74279823 CATACTA
1 TAAACCC
74279830 TAAACCAC
1 TAAACC-C
*
74279838 AAAACCC
1 TAAACCC
* *
74279845 -AATCCT
1 TAAACCC
74279851 TAAACCC
1 TAAACCC
74279858 TAAAACCC
1 T-AAACCC
74279866 TAAA
1 TAAA
74279870 TCTCCCTAAC
Statistics
Matches: 72, Mismatches: 17, Indels: 14
0.70 0.17 0.14
Matches are distributed among these distances:
6 9 0.12
7 46 0.64
8 17 0.24
ACGTcount: A:0.48, C:0.39, G:0.00, T:0.14
Consensus pattern (7 bp):
TAAACCC
Found at i:74279824 original size:21 final size:21
Alignment explanation
Indices: 74279774--74279824 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
74279764 AATTAAACAC
* * *
74279774 TAAACCCTAAACTCCAAACCC
1 TAAACCCCAAACCCCAAACCA
* *
74279795 CAAATCCCAAACCCCAAACCA
1 TAAACCCCAAACCCCAAACCA
74279816 TAAACCCCA
1 TAAACCCCA
74279825 TACTATAAAC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.45, G:0.00, T:0.10
Consensus pattern (21 bp):
TAAACCCCAAACCCCAAACCA
Found at i:74280320 original size:14 final size:14
Alignment explanation
Indices: 74280285--74280314 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
74280275 AATATCTTAG
74280285 ACCCTAAATAATAA
1 ACCCTAAATAATAA
74280299 ACCCTAAATAATAA
1 ACCCTAAATAATAA
74280313 AC
1 AC
74280315 TTTAAAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (14 bp):
ACCCTAAATAATAA
Found at i:74280521 original size:14 final size:13
Alignment explanation
Indices: 74280471--74280517 Score: 58
Period size: 14 Copynumber: 3.5 Consensus size: 13
74280461 ATAAACCTCA
74280471 AACCCTAAATCAT
1 AACCCTAAATCAT
* *
74280484 AAAACATAAATCAT
1 -AACCCTAAATCAT
74280498 CAACCCTAAATCAT
1 -AACCCTAAATCAT
74280512 AACCCT
1 AACCCT
74280518 TAAACCTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 6 0.21
14 22 0.79
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (13 bp):
AACCCTAAATCAT
Found at i:74282129 original size:20 final size:20
Alignment explanation
Indices: 74282100--74282149 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
74282090 TGTGTTTTTG
* *
74282100 GGTGATTATTCGATGTTGGT
1 GGTGAATATTCGATGTTGAT
74282120 GGTGAATATTCGATGTTGAT
1 GGTGAATATTCGATGTTGAT
74282140 GGTGAATATT
1 GGTGAATATT
74282150 ATGCTCCTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.22, C:0.04, G:0.32, T:0.42
Consensus pattern (20 bp):
GGTGAATATTCGATGTTGAT
Found at i:74287209 original size:44 final size:44
Alignment explanation
Indices: 74287121--74287210 Score: 139
Period size: 44 Copynumber: 2.0 Consensus size: 44
74287111 TACGTAAACC
*
74287121 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGTT
1 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATATGTT
74287165 AGTGTAAGACCATGTTTGGGACATGGCATCGGC-AC-AGATATGTT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCGGCTACGAGATATGTT
74287209 AG
1 AG
74287211 AACTTGTGTA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
44 19 0.44
45 16 0.37
46 8 0.19
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.28
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGATATGTT
Found at i:74295383 original size:30 final size:30
Alignment explanation
Indices: 74295325--74295383 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
74295315 ATTTTCGGGC
* **
74295325 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
74295355 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAATGGTCATTTTACCAAAG
74295384 ATATGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:74302946 original size:39 final size:37
Alignment explanation
Indices: 74302824--74302946 Score: 106
Period size: 39 Copynumber: 3.2 Consensus size: 37
74302814 ACCAAAATCC
* *
74302824 TTATTATAATTATTGTAATCATAA-TTTATGATCCAATA
1 TTATTATAATTATTGTAATTATAATTTTATGATTC-A-A
* ** *
74302862 TTATTATAATTATTGTAATTGTAATTTTCCG-GTCAAACA
1 TTATTATAATTATTGTAATTATAATTTTATGATTC--A-A
*
74302901 TTATTATAATTATGGTAATTATAATTATTATGATTCAA
1 TTATTATAATTATTGTAATTATAATT-TTATGATTCAA
74302939 TTAATTAT
1 TT-ATTAT
74302947 TATAATGAAT
Statistics
Matches: 68, Mismatches: 12, Indels: 9
0.76 0.13 0.10
Matches are distributed among these distances:
38 26 0.38
39 37 0.54
40 3 0.04
41 2 0.03
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (37 bp):
TTATTATAATTATTGTAATTATAATTTTATGATTCAA
Found at i:74312011 original size:22 final size:20
Alignment explanation
Indices: 74311967--74312012 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
74311957 TGTAGTAGGT
* *
74311967 AATAGAGTATCAACAGAAAA
1 AATAGAGTATAAACACAAAA
74311987 AATAGAGTATAAACATCCAAAA
1 AATAGAGTATAAACA--CAAAA
74312009 AATA
1 AATA
74312013 AAAGCTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
22 8 0.36
ACGTcount: A:0.61, C:0.11, G:0.11, T:0.17
Consensus pattern (20 bp):
AATAGAGTATAAACACAAAA
Done.