Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 232 of 295
Found at i:74312035 original size:13 final size:13
Alignment explanation
Indices: 74312017--74312041 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74312007 AAAATAAAAG
74312017 CTTGTAAAAAGTT
1 CTTGTAAAAAGTT
74312030 CTTGTAAAAAGT
1 CTTGTAAAAAGT
74312042 CCAAAAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
CTTGTAAAAAGTT
Found at i:74315775 original size:39 final size:39
Alignment explanation
Indices: 74315723--74315894 Score: 200
Period size: 39 Copynumber: 4.4 Consensus size: 39
74315713 TGTTTTTAAA
* *
74315723 TATTGTGACATATGCTTGAATGTTATGTGTTTATATGAG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
* *
74315762 TATTGCGATATATGCTTGAATGTTATGTGATCATATGAG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
** * ** * * *
74315801 TATTGTGGCATGTGCTTGAACATTATGTAACTATATGGG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
* *
74315840 TATTGTGATATATGCTTAAATGTTATGTGATTATATGTG
1 TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
**
74315879 TAAGGTGATATATGCT
1 TATTGTGATATATGCT
74315895 CAAAAGTGAA
Statistics
Matches: 108, Mismatches: 25, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 108 1.00
ACGTcount: A:0.27, C:0.06, G:0.23, T:0.43
Consensus pattern (39 bp):
TATTGTGATATATGCTTGAATGTTATGTGATTATATGAG
Found at i:74316978 original size:47 final size:47
Alignment explanation
Indices: 74316924--74317021 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
74316914 ATCTTGATAT
*
74316924 TCAGGTTTGGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
1 TCAGGTTTAGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
* *
74316971 TCAGGTTTAGCGACTTGGCTGGGTATAGTGTGTTACATTTGGTGGTA
1 TCAGGTTTAGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
74317018 TCAG
1 TCAG
74317022 AGCCCTAGGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.17, C:0.12, G:0.34, T:0.37
Consensus pattern (47 bp):
TCAGGTTTAGCGACCTAGCTGGGTATAGTGTGTTACATTTGGTGGTA
Found at i:74317018 original size:22 final size:22
Alignment explanation
Indices: 74316945--74317018 Score: 80
Period size: 22 Copynumber: 3.2 Consensus size: 22
74316935 GACCTAGCTG
74316945 GGTATAGTGTGTTACATTTGGT
1 GGTATAGTGTGTTACATTTGGT
*
74316967 GGTATCAG-GT-TTAGCGACTTGGCT
1 GGTAT-AGTGTGTTA-C-ATTTGG-T
74316991 GGGTATAGTGTGTTACATTTGGT
1 -GGTATAGTGTGTTACATTTGGT
74317014 GGTAT
1 GGTAT
74317019 CAGAGCCCTA
Statistics
Matches: 43, Mismatches: 2, Indels: 14
0.73 0.03 0.24
Matches are distributed among these distances:
21 3 0.07
22 13 0.30
23 8 0.19
24 8 0.19
25 8 0.19
26 3 0.07
ACGTcount: A:0.18, C:0.08, G:0.34, T:0.41
Consensus pattern (22 bp):
GGTATAGTGTGTTACATTTGGT
Found at i:74339484 original size:21 final size:21
Alignment explanation
Indices: 74339458--74339509 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
74339448 GGCCTCTAGA
74339458 ACGGGCGTGTCCCAAGGTCAC
1 ACGGGCGTGTCCCAAGGTCAC
* *
74339479 ACGGGCGTGTCCCAAGTTTAC
1 ACGGGCGTGTCCCAAGGTCAC
74339500 ACGGGCGTGT
1 ACGGGCGTGT
74339510 GAGCCCTGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.29, G:0.35, T:0.19
Consensus pattern (21 bp):
ACGGGCGTGTCCCAAGGTCAC
Found at i:74349092 original size:46 final size:46
Alignment explanation
Indices: 74349024--74349160 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
74349014 TATATATACA
* * ** * *
74349024 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACGTATC
1 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATATC
* * * *
74349070 CATCTCATACACGTTTTGCATTAGCCACTCGGCTTTACCTCATTTC
1 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATATC
**
74349116 CATCTCATACACATTTTGCATTAGCCATTCGGCTTCGCCACATAT
1 CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATAT
74349161 ATACACTTCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 75 1.00
ACGTcount: A:0.23, C:0.31, G:0.10, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTTGCATTAGCCATTCGGCTTTACCACATATC
Found at i:74349192 original size:47 final size:45
Alignment explanation
Indices: 74349134--74349303 Score: 178
Period size: 47 Copynumber: 3.6 Consensus size: 45
74349124 ACACATTTTG
* ** * *
74349134 CATTAGCCATTCGGCTTCGCCACATATATACACTTCCACGTTCATCA
1 CATTGGCCATTCGGCTT-ATCACATATATGCA-TTCCACATTCATCA
** *
74349181 CATTGGCCATTCTACCTTATCACATATATGCATTTTCACATTCATCA
1 CATTGGCCATTC-GGCTTATCACATATATGCA-TTCCACATTCATCA
* *
74349228 CATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGG-CTTATCACATATATGCATTC-CACATTCATCA
*
74349275 CATTGGCCATTCGGCCTTATCACACATAT
1 CATTGGCCATTCGG-CTTATCACATATAT
74349304 TCGGCCTTAT
Statistics
Matches: 106, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
46 1 0.01
47 102 0.96
48 3 0.03
ACGTcount: A:0.26, C:0.31, G:0.11, T:0.32
Consensus pattern (45 bp):
CATTGGCCATTCGGCTTATCACATATATGCATTCCACATTCATCA
Found at i:74349203 original size:22 final size:22
Alignment explanation
Indices: 74349177--74349251 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
74349167 TTCCACGTTC
74349177 ATCACATTGGCCATTCTACCTT
1 ATCACATTGGCCATTCTACCTT
* * *
74349199 ATCACATATATG-CATTTTCACATT
1 ATCACAT-T-GGCCATTCT-ACCTT
**
74349223 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTACCTT
74349246 ATCACA
1 ATCACA
74349252 CATATGCATG
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 13 0.32
23 10 0.25
24 10 0.25
25 7 0.17
ACGTcount: A:0.27, C:0.29, G:0.09, T:0.35
Consensus pattern (22 bp):
ATCACATTGGCCATTCTACCTT
Found at i:74349307 original size:19 final size:19
Alignment explanation
Indices: 74349283--74349322 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
74349273 CACATTGGCC
*
74349283 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCAAACAT
74349302 ATTCGGCCTTATCAAACAT
1 ATTCGGCCTTATCAAACAT
74349321 AT
1 AT
74349323 GCATGTTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.33
Consensus pattern (19 bp):
ATTCGGCCTTATCAAACAT
Found at i:74349313 original size:66 final size:66
Alignment explanation
Indices: 74349236--74349435 Score: 373
Period size: 66 Copynumber: 3.0 Consensus size: 66
74349226 CACATTGGCC
*
74349236 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
74349301 T
66 T
*
74349302 ATTCGGCCTTATCAAACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
74349367 T
66 T
*
74349368 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
74349433 T
66 T
74349434 AT
1 AT
74349436 GCATGCTCAC
Statistics
Matches: 130, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 130 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.32
Consensus pattern (66 bp):
ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACA
T
Found at i:74349373 original size:19 final size:19
Alignment explanation
Indices: 74349349--74349388 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
74349339 CACATTGGCC
74349349 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
74349368 ATTCGGCCTTATCACACAT
1 ATTCGGCCTTATCACACAT
74349387 AT
1 AT
74349389 GCATGTTCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (19 bp):
ATTCGGCCTTATCACACAT
Found at i:74349419 original size:113 final size:117
Alignment explanation
Indices: 74349174--74349457 Score: 331
Period size: 113 Copynumber: 2.5 Consensus size: 117
74349164 CACTTCCACG
** *
74349174 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATTTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* * *
74349239 CGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
66 CGGCCTTATCACACATATGCAGGCTCACATTCATCACATTGGCCATTCGACA
* * *
74349291 TT-ATCACA----CATATTCGGCCTTATCAAACATATGCATGTTCACATTCATCACATTGGCCAT
1 TTCATCACATTGGC-CATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCAT
* **
74349351 TCGGCCTTATCACACATATTC-GGC-CTTA-TCA-CACATAT-G-CATGTTC-ACA
65 TCGGCCTTATCACACATATGCAGGCTCACATTCATCACAT-TGGCCA--TTCGACA
*
74349400 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATT
74349458 AAAATCCTAA
Statistics
Matches: 142, Mismatches: 16, Indels: 22
0.79 0.09 0.12
Matches are distributed among these distances:
108 2 0.01
109 9 0.06
110 13 0.09
111 2 0.01
112 3 0.02
113 104 0.73
114 1 0.01
116 6 0.04
117 2 0.01
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.33
Consensus pattern (117 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATGCAGGCTCACATTCATCACATTGGCCATTCGACA
Found at i:74349424 original size:47 final size:47
Alignment explanation
Indices: 74349368--74349457 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
74349358 TATCACACAT
*
74349368 ATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCC
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
*
74349415 ATTCGGCCTTATCACATATATGCATGCTCACATTCATCACATT
1 ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATT
74349458 AAAATCCTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
ATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCC
Found at i:74382410 original size:46 final size:46
Alignment explanation
Indices: 74382350--74382577 Score: 251
Period size: 46 Copynumber: 5.0 Consensus size: 46
74382340 TTTGACATGA
* * * * *
74382350 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATGTCAGGC
* **
74382396 TGCCATGGTATCTTTCAACCATGGTCTTTTTCATTTCATGTCACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAGGC
* ** *
74382442 TGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAGGC
* ** * *
74382488 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAGGC
* ** *
74382534 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAG
74382578 AGAGCACACT
Statistics
Matches: 162, Mismatches: 19, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 158 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCAGGC
Found at i:74382523 original size:92 final size:92
Alignment explanation
Indices: 74382350--74382577 Score: 278
Period size: 92 Copynumber: 2.5 Consensus size: 92
74382340 TTTGACATGA
* * * ** * * * *
74382350 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGCTGCCATAGTATCTTTCAA
*** *
74382414 CCATGGTCTTTTTCATTTCATGTCACAC
65 CCATGGTCTTACACATTTCATATCACAC
*
74382442 TGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATAGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATAGTATCTTTCAAC
***
74382507 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTACACATTTCATATCACAC
*
74382534 TTCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74382578 AGAGCACACT
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
91 4 0.03
92 112 0.97
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGCTGCCATAGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACAC
Found at i:74384848 original size:24 final size:24
Alignment explanation
Indices: 74384821--74384871 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
74384811 GTATTACAAA
*
74384821 TGTATGTATT-TTTATCCATACACT
1 TGTATATATTATTTA-CCATACACT
* *
74384845 TGTATATTTTATTTACCATACATT
1 TGTATATATTATTTACCATACACT
74384869 TGT
1 TGT
74384872 CTTTATATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.25, C:0.14, G:0.08, T:0.53
Consensus pattern (24 bp):
TGTATATATTATTTACCATACACT
Found at i:74387297 original size:46 final size:46
Alignment explanation
Indices: 74387237--74387464 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
74387227 TTTGACATGA
* * * * * * * *
74387237 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * **
74387283 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
74387329 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
74387375 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
74387421 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74387465 AGAGCACACT
Statistics
Matches: 167, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 163 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:74397217 original size:47 final size:47
Alignment explanation
Indices: 74397136--74397529 Score: 583
Period size: 47 Copynumber: 8.4 Consensus size: 47
74397126 AATGTGAAAG
*
74397136 TGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTG-ATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
74397184 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
74397231 TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACG
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
74397278 TGTGTATGTGTGATAAGACCGAATGGCCAATGTGATGAAAGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* *
74397325 TGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTAAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
*
74397372 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * *
74397419 TGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAGCA
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
* * * * *
74397466 TGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-A
1 TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
**
74397512 GTGTATAAATGTGATAAG
1 -TGTATATGTGTGATAAG
74397530 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 24, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 308 0.96
48 12 0.04
ACGTcount: A:0.32, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACA
Found at i:74407363 original size:42 final size:42
Alignment explanation
Indices: 74407262--74407366 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
74407252 GCACATGGGC
** *
74407262 AGAGACACGTGCGTGTGTCCTAGCCGTGTGTGCTACACAGGT
1 AGAGACACAAGCGTGTGTCTTAGCCGTGTGTGCTACACAGGT
*** *
74407304 AGAGACATGGGCATGTGTCTTAGCCGTGTGTGCTACAC-GGCTT
1 AGAGACACAAGCGTGTGTCTTAGCCGTGTGTGCTACACAGG--T
74407347 AGA-ACACAAGCGTGTGTCTT
1 AGAGACACAAGCGTGTGTCTT
74407367 GGTCGAGTAA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
41 2 0.04
42 47 0.89
43 4 0.08
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (42 bp):
AGAGACACAAGCGTGTGTCTTAGCCGTGTGTGCTACACAGGT
Found at i:74409275 original size:21 final size:21
Alignment explanation
Indices: 74409251--74409310 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
74409241 TCTATAGTTG
*
74409251 TAAATCATAAACTATAAACCT
1 TAAATCCTAAACTATAAACCT
*
74409272 TAAACCCTAAA-TATTAAACCT
1 TAAATCCTAAACTA-TAAACCT
* *
74409293 TGAATCCTAAACCATAAA
1 TAAATCCTAAACTATAAA
74409311 ACCCTAAACT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
20 2 0.06
21 29 0.91
22 1 0.03
ACGTcount: A:0.50, C:0.22, G:0.02, T:0.27
Consensus pattern (21 bp):
TAAATCCTAAACTATAAACCT
Found at i:74409446 original size:21 final size:21
Alignment explanation
Indices: 74409412--74409468 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
74409402 TTATAAAACG
*
74409412 TCTTAAAACTATAAACCCTAAA
1 TCTT-AAACCATAAACCCTAAA
74409434 TCTTAAACCATAAACCCTAAA
1 TCTTAAACCATAAACCCTAAA
**
74409455 TCCAAAACCATAAA
1 TCTTAAACCATAAA
74409469 ACCTTAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (21 bp):
TCTTAAACCATAAACCCTAAA
Found at i:74410210 original size:188 final size:186
Alignment explanation
Indices: 74409940--74410291 Score: 449
Period size: 188 Copynumber: 1.9 Consensus size: 186
74409930 TTGAAGCTTT
** * *
74409940 GTTATTAGTGGCGCTTCTAAAAAATGCCACAAAACATCTATTAAGAGAATGTAAAACGACGTTGT
1 GTTATTAGTGGCGCTTCTAAAAAACACCACAAAACATC-ATTAAGAGAATGTAAAACGACATCGT
* * * ** *
74410005 TTACATCCTTCTTATTAGTGGCGCTTCTATAAACGCCGCAAAAGGTGTGATTTACTAGCGTTTTC
65 TTACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACCAGCGTTTTC
* * *
74410070 ACTAGAAAATGCCACAAACATCTATTAGTAGATTGCAAAACAGCGTCGTTATTACCAA
130 ACTAG-AAACGCCACAAAAATCTATTAATAGATTGCAAAACAGCGTCGTTATTACCAA
* * *
74410128 GTTATTAGTGGCGCTTCTTGGAAAAACACCACAAAACATC-TTAAGAG-ATTTCAAAACGTCATC
1 GTTATTAGTGGCGCTTC-T-AAAAAACACCACAAAACATCATTAAGAGAATGT-AAAACGACATC
* * *
74410191 GTTTTATAGCCTT-TTATTAGTGGCGCTTTTATAAACGCCACAAAAGATGTGAAATACCGGCGTT
63 G-TTTACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACCAGCGTT
*
74410255 TTCCCTAGAAACGCCACAAAAATCTATTAATAGATTG
127 TTCACTAGAAACGCCACAAAAATCTATTAATAGATTG
74410292 TAGAAACTGC
Statistics
Matches: 140, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
187 29 0.21
188 84 0.60
189 10 0.07
190 17 0.12
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (186 bp):
GTTATTAGTGGCGCTTCTAAAAAACACCACAAAACATCATTAAGAGAATGTAAAACGACATCGTT
TACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACCAGCGTTTTCA
CTAGAAACGCCACAAAAATCTATTAATAGATTGCAAAACAGCGTCGTTATTACCAA
Found at i:74412014 original size:29 final size:28
Alignment explanation
Indices: 74411978--74412055 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
74411968 TCATGAGATT
74411978 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
74412008 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
74412035 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
74412056 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:74412273 original size:174 final size:174
Alignment explanation
Indices: 74412012--74412335 Score: 585
Period size: 174 Copynumber: 1.9 Consensus size: 174
74412002 TGTACAGCAC
*
74412012 TAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGTGTG
1 TAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTG
* * *
74412077 CGAACCCAATATATTTTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCAAGTCGATTTT
66 CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCAAGTCAATTTT
74412142 GGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCAT
131 GGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCAT
74412186 TAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTG
1 TAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTG
* * *
74412251 CGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAATTTT
66 CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCAAGTCAATTTT
74412316 GGACAGCGGAAAAGGTAAGT
131 GGACAGCGGAAAAGGTAAGT
74412336 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 143 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (174 bp):
TAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTGTG
CGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCAAGTCAATTTT
GGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGCAT
Found at i:74417749 original size:40 final size:40
Alignment explanation
Indices: 74417701--74417906 Score: 324
Period size: 40 Copynumber: 5.2 Consensus size: 40
74417691 GGACTAAGAT
* *
74417701 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
74417741 CCAAAGGCATTTGTGCGAGTTACTATATCCGGGCTGAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
74417781 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
74417821 CCGAAGGCATTTGTGTGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* ** *
74417861 CCGAAGGCATTTGTGCAAGTTGTTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
74417900 CCGAAGG
1 CCGAAGG
74417907 TACTTGGGTT
Statistics
Matches: 154, Mismatches: 12, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 15 0.10
40 139 0.90
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:74423967 original size:40 final size:40
Alignment explanation
Indices: 74423893--74424194 Score: 428
Period size: 40 Copynumber: 7.6 Consensus size: 40
74423883 AACCCAAGTA
* *
74423893 CCTTCGGGAATTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* * *
74423932 CCTCCGGGTCTTAGCCCGGATACAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74423972 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
74424012 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCGCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * * *
74424052 CCTTCAGGACTTAGCCCAGATATAGTCACCAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
74424092 CCTTCGGGACTTAGCCCAGATATAGTCACTAGCGCAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74424132 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
74424172 CCTTTGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
74424195 CATCCGAGTA
Statistics
Matches: 233, Mismatches: 28, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
39 11 0.05
40 221 0.95
41 1 0.00
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:74429031 original size:40 final size:40
Alignment explanation
Indices: 74428949--74429102 Score: 240
Period size: 40 Copynumber: 3.9 Consensus size: 40
74428939 GACTAAGATT
* *
74428949 CGAAGGCATTTGTGCTAGTGACTATAT-CGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
*
74428988 CGAAGGCATTTTTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
74429028 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
* **
74429068 CGAAGGCATTTGTGCGATTTGTTATATCC-GGCTAA
1 CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAA
74429103 ATGTCGAAGG
Statistics
Matches: 107, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
39 30 0.28
40 77 0.72
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.30
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCC
Found at i:74429111 original size:79 final size:79
Alignment explanation
Indices: 74428948--74429112 Score: 233
Period size: 79 Copynumber: 2.1 Consensus size: 79
74428938 GGACTAAGAT
* *
74428948 TCGAAGGCATTTGTGCTAGTGACTATATCGGGCTAAGTCCCGAAGGCATTTTTGCGAGTTACTAT
1 TCGAAGGCATTTGTGCGAGTGACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
*
74429013 ATCCGGGCTAAGTC
66 ATCCGGGCTAAATC
* * * **
74429027 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTGTTA
1 TCGAAGGCATTTGTGCGAGTGACTATAT-CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
*
74429092 TATCC-GGCTAAATG
65 TATCCGGGCTAAATC
74429106 TCGAAGG
1 TCGAAGG
74429113 TACTTGGGTT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
79 38 0.51
80 37 0.49
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (79 bp):
TCGAAGGCATTTGTGCGAGTGACTATATCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
ATCCGGGCTAAATC
Found at i:74431718 original size:15 final size:13
Alignment explanation
Indices: 74431696--74431802 Score: 69
Period size: 14 Copynumber: 8.1 Consensus size: 13
74431686 TCAATCTTAT
74431696 TTTAATTAATATAA
1 TTTAATTAAT-TAA
* *
74431710 TTTGGATTAATTTA
1 TTT-AATTAATTAA
74431724 TTTAATT-ATT-A
1 TTTAATTAATTAA
74431735 TTTAATTAATATAA
1 TTTAATTAAT-TAA
* *
74431749 TTTGGATTAATTTA
1 TTT-AATTAATTAA
*
74431763 TTTAAAT-ATT-A
1 TTTAATTAATTAA
*
74431774 TTTAATTAATACAA
1 TTTAATTAAT-TAA
*
74431788 TTTGGATTAATTAA
1 TTT-AATTAATTAA
74431802 T
1 T
74431803 AATATAATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
11 15 0.21
12 10 0.14
13 6 0.08
14 24 0.33
15 18 0.25
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (13 bp):
TTTAATTAATTAA
Found at i:74431721 original size:19 final size:19
Alignment explanation
Indices: 74431697--74431821 Score: 103
Period size: 19 Copynumber: 6.3 Consensus size: 19
74431687 CAATCTTATT
74431697 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTTGGA
* * *
74431716 TTAATTTATTTAATTAT-TA
1 TTAATTAATATAATT-TGGA
74431735 TTTAATTAATATAATTTGGA
1 -TTAATTAATATAATTTGGA
* *
74431755 TTAATTTATTTAAATATT--A
1 TTAATTAATAT-AAT-TTGGA
*
74431774 TTTAATTAATACAATTTGGA
1 -TTAATTAATATAATTTGGA
74431794 TTAATTAATAATATAATTTGGA
1 TTAA-T--TAATATAATTTGGA
74431816 TTAATT
1 TTAATT
74431822 TATTTAAATA
Statistics
Matches: 83, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
18 2 0.02
19 33 0.40
20 28 0.34
21 3 0.04
22 17 0.20
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (19 bp):
TTAATTAATATAATTTGGA
Found at i:74431737 original size:11 final size:11
Alignment explanation
Indices: 74431721--74431781 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 11
74431711 TTGGATTAAT
74431721 TTATTTAATTA
1 TTATTTAATTA
74431732 TTATTTAATTAA
1 TTATTTAATT-A
*
74431744 TATAATTTGGATTAA
1 T-T-ATTT-AATT-A
*
74431759 TTTATTTAAATA
1 -TTATTTAATTA
74431771 TTATTTAATTA
1 TTATTTAATTA
74431782 ATACAATTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 20 0.49
12 3 0.07
13 3 0.07
14 8 0.20
15 6 0.15
16 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
TTATTTAATTA
Found at i:74431740 original size:39 final size:39
Alignment explanation
Indices: 74431696--74431799 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
74431686 TCAATCTTAT
*
74431696 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
74431735 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
74431774 TTTAATTAATACAATTTGGATTAATT
1 TTTAATTAATATAATTTGGATTAATT
74431800 AATAATATAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:74431741 original size:20 final size:20
Alignment explanation
Indices: 74431716--74431780 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
74431706 ATAATTTGGA
74431716 TTAATTTATTTAATTATTAT
1 TTAATTTATTTAATTATTAT
* * *
74431736 TTAATTAATATAATT-TGGA-
1 TTAATTTATTTAATTAT-TAT
*
74431755 TTAATTTATTTAAATATTAT
1 TTAATTTATTTAATTATTAT
74431775 TTAATT
1 TTAATT
74431781 AATACAATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 14 0.40
20 21 0.60
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTAATTTATTTAATTATTAT
Found at i:74431742 original size:8 final size:9
Alignment explanation
Indices: 74431716--74431780 Score: 51
Period size: 9 Copynumber: 6.7 Consensus size: 9
74431706 ATAATTTGGA
74431716 TTAATTTAT
1 TTAATTTAT
74431725 TTAATTATTAT
1 TTAA-T-TTAT
*
74431736 TTAATTAAT
1 TTAATTTAT
*
74431745 ATAATTTGGA-
1 TTAATTT--AT
74431755 TTAATTTAT
1 TTAATTTAT
74431764 TTAAATATTAT
1 TT-AAT-TTAT
74431775 TTAATT
1 TTAATT
74431781 AATACAATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
8 1 0.02
9 15 0.33
10 14 0.31
11 15 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TTAATTTAT
Found at i:74431811 original size:22 final size:23
Alignment explanation
Indices: 74431770--74431821 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
74431760 TTATTTAAAT
*
74431770 ATTATTTAATTAATACAATTTGG
1 ATTAATTAATTAATACAATTTGG
*
74431793 ATTAATTAA-TAATATAATTTGG
1 ATTAATTAATTAATACAATTTGG
74431815 ATTAATT
1 ATTAATT
74431822 TATTTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (23 bp):
ATTAATTAATTAATACAATTTGG
Found at i:74439074 original size:47 final size:47
Alignment explanation
Indices: 74439023--74439198 Score: 237
Period size: 47 Copynumber: 3.7 Consensus size: 47
74439013 TTAGGATTCT
* * *
74439023 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
74439070 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
74439117 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
74439164 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
74439199 TCCCGAAGGG
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
46 1 0.01
47 114 0.99
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:74439367 original size:37 final size:37
Alignment explanation
Indices: 74439317--74439395 Score: 158
Period size: 37 Copynumber: 2.1 Consensus size: 37
74439307 CCGAGCTCTA
74439317 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
74439354 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
74439391 AAGAC
1 AAGAC
74439396 TTCGTAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:74446124 original size:9 final size:9
Alignment explanation
Indices: 74446107--74446460 Score: 417
Period size: 9 Copynumber: 39.7 Consensus size: 9
74446097 TATATACTTG
74446107 AACTTACAT
1 AACTTACAT
*
74446116 AACTCACAT
1 AACTTACAT
74446125 AACTTACAT
1 AACTTACAT
*
74446134 AACTTATAT
1 AACTTACAT
74446143 AACTTACAT
1 AACTTACAT
74446152 AACTTACAT
1 AACTTACAT
74446161 AACTTACAT
1 AACTTACAT
*
74446170 AACTCACAT
1 AACTTACAT
*
74446179 AACTCACAT
1 AACTTACAT
*
74446188 AACTCACAT
1 AACTTACAT
*
74446197 AACTCACAT
1 AACTTACAT
* *
74446206 ATCTCACAT
1 AACTTACAT
74446215 AACTTACAT
1 AACTTACAT
74446224 AACTTACAT
1 AACTTACAT
* *
74446233 AACTCACAC
1 AACTTACAT
*
74446242 AACTCACAT
1 AACTTACAT
*
74446251 AACTCACAT
1 AACTTACAT
*
74446260 AACTCACAT
1 AACTTACAT
*
74446269 AACTCACAT
1 AACTTACAT
*
74446278 TACTTACAT
1 AACTTACAT
*
74446287 AACTTATAT
1 AACTTACAT
*
74446296 AACTTAAAT
1 AACTTACAT
* *
74446305 AACTTAGAA
1 AACTTACAT
*
74446314 AACTCACAT
1 AACTTACAT
74446323 AACTTACAT
1 AACTTACAT
*
74446332 AACTTATAT
1 AACTTACAT
74446341 AACTTACAT
1 AACTTACAT
*
74446350 AACTTGCAT
1 AACTTACAT
*
74446359 AACTCACAT
1 AACTTACAT
*
74446368 AACTCACAT
1 AACTTACAT
*
74446377 AACTCACAT
1 AACTTACAT
74446386 AACTTACAT
1 AACTTACAT
74446395 AACTTACAT
1 AACTTACAT
*
74446404 AATTTACAT
1 AACTTACAT
74446413 AACTTACAT
1 AACTTACAT
74446422 AA--TACAT
1 AACTTACAT
* *
74446429 AA-ATATAT
1 AACTTACAT
* *
74446437 ATCATACAT
1 AACTTACAT
74446446 AACTTACAT
1 AACTTACAT
74446455 AACTTA
1 AACTTA
74446461 ATTAGAGTTA
Statistics
Matches: 308, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
7 7 0.02
8 5 0.02
9 296 0.96
ACGTcount: A:0.45, C:0.24, G:0.01, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:74451889 original size:10 final size:12
Alignment explanation
Indices: 74451862--74451895 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
74451852 CATTCCCCCT
74451862 ATCTCTCCACAA
1 ATCTCTCCACAA
74451874 ATCTCTCCACAA
1 ATCTCTCCACAA
*
74451886 CTCTCTCCAC
1 ATCTCTCCAC
74451896 TTTTCCCTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.47, G:0.00, T:0.26
Consensus pattern (12 bp):
ATCTCTCCACAA
Found at i:74460804 original size:46 final size:46
Alignment explanation
Indices: 74460742--74460969 Score: 296
Period size: 46 Copynumber: 5.0 Consensus size: 46
74460732 TTTGGTATGA
* * * * * * *
74460742 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
* * ** * **
74460788 TGTCATCGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
74460834 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* *
74460880 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
74460926 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74460970 AGAGCACACT
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 159 0.98
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:74462996 original size:18 final size:18
Alignment explanation
Indices: 74462973--74463008 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
74462963 GCTTTGTTTC
74462973 TTTATTTCTCTCCTTTTT
1 TTTATTTCTCTCCTTTTT
* *
74462991 TTTATTTTTTTCCTTTTT
1 TTTATTTCTCTCCTTTTT
74463009 ATTTTCCCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.06, C:0.17, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTATTTCTCTCCTTTTT
Found at i:74465693 original size:46 final size:46
Alignment explanation
Indices: 74465631--74465858 Score: 269
Period size: 46 Copynumber: 5.0 Consensus size: 46
74465621 TTTGGTATGA
* * * * * * *
74465631 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
* ** * **
74465677 TGTCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
74465723 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
* * * *
74465769 TACCATAGTATCTTTCAACCATGGTCTTACACATTTCGTATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
74465815 TGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
74465859 AGAGCACACT
Statistics
Matches: 157, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
45 4 0.03
46 153 0.97
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:74467817 original size:20 final size:21
Alignment explanation
Indices: 74467781--74467825 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
74467771 AGCTTAACAC
74467781 CTTTGATTTTCCCTTTTC-TT
1 CTTTGATTTTCCCTTTTCTTT
*
74467801 CTTT-ATTTTCTCTTTTTCTTT
1 CTTTGATTTTC-CCTTTTCTTT
74467822 CTTT
1 CTTT
74467826 CCTTCCCCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 6 0.27
20 10 0.45
21 6 0.27
ACGTcount: A:0.04, C:0.22, G:0.02, T:0.71
Consensus pattern (21 bp):
CTTTGATTTTCCCTTTTCTTT
Found at i:74480634 original size:188 final size:187
Alignment explanation
Indices: 74480311--74480673 Score: 448
Period size: 188 Copynumber: 1.9 Consensus size: 187
74480301 GAAGCTTTGA
* * * *
74480311 TATTAGTGGCGCTTCTAAAAAATGCCACAAAACATCTATTAAGAGAATGTAAAACGACGTTGTTT
1 TATTAGTGGAGCTTCTAAAAAACGCCACAAAACATCTA-TAAGAGAATGTAAAACGACATCGTTT
* * * ** *
74480376 ACATCCTTCTTATTAGTGGCGCTTCTATAAACGCCGCAAAAGGTGTGATTTACTAGCGTTTTCAC
65 ACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACGAGCGTTTTCAC
* * * *
74480441 TAGAAAATGCCACAAACATCTATTAGTAGATTGCA-AAACGGCGTCGTTATTACCAAGT
130 TAG-AAACGCCACAAAAACCTATTAATAGATTGCAGAAACGGCGTCGTTATTACCAAGT
* *
74480499 TATTAGTGGAGCTTCTAGGAAAAACGCCACAAAACATCTA-AAGAG-ATTTCAAAACGTCATCGT
1 TATTAGTGGAGCTTCTA--AAAAACGCCACAAAACATCTATAAGAGAATGT-AAAACGACATCG-
* *
74480562 TTTATAGCCTT-TTATTAGTGGCGCTTTTATAAACGCCACAAAAGATGTGAAATACCGA-CGTTT
62 TTTACAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATA-CGAGCGTTT
* *
74480625 TCCCTAGAAACGCCACAAAAACCTATTAATAGATTGCAGAAACTGCGTC
126 TCACTAGAAACGCCACAAAAACCTATTAATAGATTGCAGAAACGGCGTC
74480674 ATTTTATAGC
Statistics
Matches: 149, Mismatches: 20, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
187 30 0.20
188 88 0.59
189 11 0.07
190 20 0.13
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (187 bp):
TATTAGTGGAGCTTCTAAAAAACGCCACAAAACATCTATAAGAGAATGTAAAACGACATCGTTTA
CAGCCTTCTTATTAGTGGCGCTTCTATAAACGCCACAAAAGATGTGAAATACGAGCGTTTTCACT
AGAAACGCCACAAAAACCTATTAATAGATTGCAGAAACGGCGTCGTTATTACCAAGT
Found at i:74484309 original size:15 final size:13
Alignment explanation
Indices: 74484287--74484393 Score: 69
Period size: 14 Copynumber: 8.1 Consensus size: 13
74484277 TCAATCTTAT
74484287 TTTAATTAATATAA
1 TTTAATTAAT-TAA
* *
74484301 TTTGGATTAATTTA
1 TTT-AATTAATTAA
74484315 TTTAATT-ATT-A
1 TTTAATTAATTAA
74484326 TTTAATTAATATAA
1 TTTAATTAAT-TAA
* *
74484340 TTTGGATTAATTTA
1 TTT-AATTAATTAA
*
74484354 TTTAAAT-ATT-A
1 TTTAATTAATTAA
*
74484365 TTTAATTAATACAA
1 TTTAATTAAT-TAA
*
74484379 TTTGGATTAATTAA
1 TTT-AATTAATTAA
74484393 T
1 T
74484394 AATATAATTT
Statistics
Matches: 73, Mismatches: 11, Indels: 18
0.72 0.11 0.18
Matches are distributed among these distances:
11 15 0.21
12 10 0.14
13 6 0.08
14 24 0.33
15 18 0.25
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (13 bp):
TTTAATTAATTAA
Found at i:74484312 original size:19 final size:19
Alignment explanation
Indices: 74484288--74484412 Score: 103
Period size: 19 Copynumber: 6.3 Consensus size: 19
74484278 CAATCTTATT
74484288 TTAATTAATATAATTTGGA
1 TTAATTAATATAATTTGGA
* * *
74484307 TTAATTTATTTAATTAT-TA
1 TTAATTAATATAATT-TGGA
74484326 TTTAATTAATATAATTTGGA
1 -TTAATTAATATAATTTGGA
* *
74484346 TTAATTTATTTAAATATT--A
1 TTAATTAATAT-AAT-TTGGA
*
74484365 TTTAATTAATACAATTTGGA
1 -TTAATTAATATAATTTGGA
74484385 TTAATTAATAATATAATTTGGA
1 TTAA-T--TAATATAATTTGGA
74484407 TTAATT
1 TTAATT
74484413 TATTTAAATA
Statistics
Matches: 83, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
18 2 0.02
19 33 0.40
20 28 0.34
21 3 0.04
22 17 0.20
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (19 bp):
TTAATTAATATAATTTGGA
Found at i:74484328 original size:11 final size:11
Alignment explanation
Indices: 74484312--74484372 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 11
74484302 TTGGATTAAT
74484312 TTATTTAATTA
1 TTATTTAATTA
74484323 TTATTTAATTAA
1 TTATTTAATT-A
*
74484335 TATAATTTGGATTAA
1 T-T-ATTT-AATT-A
*
74484350 TTTATTTAAATA
1 -TTATTTAATTA
74484362 TTATTTAATTA
1 TTATTTAATTA
74484373 ATACAATTTG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
11 20 0.49
12 3 0.07
13 3 0.07
14 8 0.20
15 6 0.15
16 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.57
Consensus pattern (11 bp):
TTATTTAATTA
Found at i:74484331 original size:39 final size:39
Alignment explanation
Indices: 74484287--74484390 Score: 190
Period size: 39 Copynumber: 2.7 Consensus size: 39
74484277 TCAATCTTAT
*
74484287 TTTAATTAATATAATTTGGATTAATTTATTTAATTATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
74484326 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
1 TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
*
74484365 TTTAATTAATACAATTTGGATTAATT
1 TTTAATTAATATAATTTGGATTAATT
74484391 AATAATATAA
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.39, C:0.01, G:0.06, T:0.54
Consensus pattern (39 bp):
TTTAATTAATATAATTTGGATTAATTTATTTAAATATTA
Found at i:74484332 original size:20 final size:20
Alignment explanation
Indices: 74484307--74484371 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
74484297 ATAATTTGGA
74484307 TTAATTTATTTAATTATTAT
1 TTAATTTATTTAATTATTAT
* * *
74484327 TTAATTAATATAATT-TGGA-
1 TTAATTTATTTAATTAT-TAT
*
74484346 TTAATTTATTTAAATATTAT
1 TTAATTTATTTAATTATTAT
74484366 TTAATT
1 TTAATT
74484372 AATACAATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 14 0.40
20 21 0.60
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
TTAATTTATTTAATTATTAT
Found at i:74484333 original size:8 final size:9
Alignment explanation
Indices: 74484307--74484371 Score: 51
Period size: 9 Copynumber: 6.7 Consensus size: 9
74484297 ATAATTTGGA
74484307 TTAATTTAT
1 TTAATTTAT
74484316 TTAATTATTAT
1 TTAA-T-TTAT
*
74484327 TTAATTAAT
1 TTAATTTAT
*
74484336 ATAATTTGGA-
1 TTAATTT--AT
74484346 TTAATTTAT
1 TTAATTTAT
74484355 TTAAATATTAT
1 TT-AAT-TTAT
74484366 TTAATT
1 TTAATT
74484372 AATACAATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
8 1 0.02
9 15 0.33
10 14 0.31
11 15 0.33
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.58
Consensus pattern (9 bp):
TTAATTTAT
Found at i:74484402 original size:22 final size:23
Alignment explanation
Indices: 74484361--74484412 Score: 79
Period size: 22 Copynumber: 2.3 Consensus size: 23
74484351 TTATTTAAAT
*
74484361 ATTATTTAATTAATACAATTTGG
1 ATTAATTAATTAATACAATTTGG
*
74484384 ATTAATTAA-TAATATAATTTGG
1 ATTAATTAATTAATACAATTTGG
74484406 ATTAATT
1 ATTAATT
74484413 TATTTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 19 0.70
23 8 0.30
ACGTcount: A:0.42, C:0.02, G:0.08, T:0.48
Consensus pattern (23 bp):
ATTAATTAATTAATACAATTTGG
Found at i:74484449 original size:29 final size:29
Alignment explanation
Indices: 74484408--74484473 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
74484398 TAATTTGGAT
*
74484408 TAATTTATT-TAAATATTATTAAATTAATA
1 TAATTT-TTATAAATATTATTAAATTAAAA
* *
74484437 TTATTTTTATAAATATTATTTAATTAAAA
1 TAATTTTTATAAATATTATTAAATTAAAA
74484466 TAATTTTT
1 TAATTTTT
74484474 TTCCATGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 2 0.06
29 30 0.94
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
TAATTTTTATAAATATTATTAAATTAAAA
Found at i:74484464 original size:15 final size:15
Alignment explanation
Indices: 74484410--74484464 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
74484400 ATTTGGATTA
*
74484410 ATTTATTTAAATATT
1 ATTTAATTAAATATT
*
74484425 ATTAAATT-AATATT
1 ATTTAATTAAATATT
*
74484439 ATTT-TTATAAATATT
1 ATTTAAT-TAAATATT
74484454 ATTTAATTAAA
1 ATTTAATTAAA
74484465 ATAATTTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
13 1 0.03
14 10 0.31
15 20 0.62
16 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTTAATTAAATATT
Found at i:74487614 original size:33 final size:33
Alignment explanation
Indices: 74487572--74487638 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
74487562 TCATGTGTAA
74487572 ATGTAGTACCATAATTTTCATTTTGAGCAATTT
1 ATGTAGTACCATAATTTTCATTTTGAGCAATTT
74487605 ATGTAGTACCATAATTTTCATTTTGAGCAATTT
1 ATGTAGTACCATAATTTTCATTTTGAGCAATTT
74487638 A
1 A
74487639 ATGTTGTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (33 bp):
ATGTAGTACCATAATTTTCATTTTGAGCAATTT
Found at i:74489461 original size:9 final size:9
Alignment explanation
Indices: 74489444--74489798 Score: 410
Period size: 9 Copynumber: 39.7 Consensus size: 9
74489434 TATATACTTG
74489444 AACTTACAT
1 AACTTACAT
*
74489453 AACTCACAT
1 AACTTACAT
74489462 AACTTACAT
1 AACTTACAT
*
74489471 AACTTATAT
1 AACTTACAT
74489480 AACTTACAT
1 AACTTACAT
* *
74489489 AAATTAAAT
1 AACTTACAT
74489498 AACTTACAT
1 AACTTACAT
74489507 AACTTACAT
1 AACTTACAT
*
74489516 AACTCACAT
1 AACTTACAT
*
74489525 AACTCACAT
1 AACTTACAT
*
74489534 AACTCACAT
1 AACTTACAT
*
74489543 AACTCACAT
1 AACTTACAT
* *
74489552 ATCTCACAT
1 AACTTACAT
74489561 AACTTACAT
1 AACTTACAT
*
74489570 AACTCACAT
1 AACTTACAT
*
74489579 AACTCACAT
1 AACTTACAT
*
74489588 AACTCACAT
1 AACTTACAT
*
74489597 AACTCACAT
1 AACTTACAT
*
74489606 AACTCACAT
1 AACTTACAT
*
74489615 TACTTACAT
1 AACTTACAT
*
74489624 AACTTATAT
1 AACTTACAT
74489633 AACTTACAT
1 AACTTACAT
74489642 AACTTACAT
1 AACTTACAT
*
74489651 AACTCACAT
1 AACTTACAT
74489660 AACTTACAT
1 AACTTACAT
*
74489669 AACTTATAT
1 AACTTACAT
74489678 AACTTACAT
1 AACTTACAT
*
74489687 AACTTGCAT
1 AACTTACAT
*
74489696 AACTCACAT
1 AACTTACAT
*
74489705 AACTCACAT
1 AACTTACAT
*
74489714 AACTCACAT
1 AACTTACAT
74489723 AACTTACAT
1 AACTTACAT
74489732 AACTTACAT
1 AACTTACAT
*
74489741 AATTTACAT
1 AACTTACAT
*
74489750 AACTTATAT
1 AACTTACAT
*
74489759 AA--TACTT
1 AACTTACAT
* *
74489766 AA-ATATAT
1 AACTTACAT
* *
74489774 ATCATATCAT
1 AACTTA-CAT
74489784 AACTTACAT
1 AACTTACAT
74489793 AACTTA
1 AACTTA
74489799 ATTAGAGTTA
Statistics
Matches: 306, Mismatches: 37, Indels: 6
0.88 0.11 0.02
Matches are distributed among these distances:
7 5 0.02
8 4 0.01
9 291 0.95
10 6 0.02
ACGTcount: A:0.45, C:0.24, G:0.00, T:0.32
Consensus pattern (9 bp):
AACTTACAT
Found at i:74495791 original size:43 final size:43
Alignment explanation
Indices: 74495687--74495792 Score: 160
Period size: 43 Copynumber: 2.5 Consensus size: 43
74495677 GAAGCGCCGC
* * *
74495687 TAAAAGTCATGGCTTTTAGTGGCGCTTCCCCAACAAACACCAT
1 TAAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAACACCAT
*
74495730 TAAAAAGCCATGAC-TTTAGCGGCGCTTCCCCAACAAACACCGT
1 T-AAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAACACCAT
74495773 TAAAAGCCATGACTTTTAGC
1 TAAAAGCCATGACTTTTAGC
74495793 AGTGCTTTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
42 12 0.21
43 35 0.61
44 10 0.18
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (43 bp):
TAAAAGCCATGACTTTTAGCGGCGCTTCCCCAACAAACACCAT
Found at i:74496088 original size:61 final size:61
Alignment explanation
Indices: 74495993--74496112 Score: 222
Period size: 61 Copynumber: 2.0 Consensus size: 61
74495983 TCTTGTAGTA
*
74495993 TAAGCTCTATTGAGTATATATATATTGGAGACAGGATTTAGCCTGGACTGGTAATCCTGAC
1 TAAGCTCTATTGAGTATATATATATTAGAGACAGGATTTAGCCTGGACTGGTAATCCTGAC
*
74496054 TAAGCTTTATTGAGTATATATATATTAGAGACAGGATTTAGCCTGGACTGGTAATCCTG
1 TAAGCTCTATTGAGTATATATATATTAGAGACAGGATTTAGCCTGGACTGGTAATCCTG
74496113 TTGTATATAT
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.34
Consensus pattern (61 bp):
TAAGCTCTATTGAGTATATATATATTAGAGACAGGATTTAGCCTGGACTGGTAATCCTGAC
Found at i:74498281 original size:7 final size:7
Alignment explanation
Indices: 74498269--74498302 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
74498259 ACACATCTCT
74498269 CATTCTA
1 CATTCTA
74498276 CATTCTA
1 CATTCTA
74498283 CATTCTA
1 CATTCTA
74498290 CATTCTA
1 CATTCTA
74498297 CATTCT
1 CATTCT
74498303 TTTCTTTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.44
Consensus pattern (7 bp):
CATTCTA
Found at i:74498293 original size:21 final size:21
Alignment explanation
Indices: 74498261--74498302 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
74498251 CATTCATAAC
74498261 ACATCTCTCATTCTACATTCT
1 ACATCTCTCATTCTACATTCT
74498282 ACAT-TCTACATTCTACATTCT
1 ACATCTCT-CATTCTACATTCT
74498303 TTTCTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (21 bp):
ACATCTCTCATTCTACATTCT
Found at i:74502138 original size:37 final size:37
Alignment explanation
Indices: 74502083--74502244 Score: 157
Period size: 37 Copynumber: 4.4 Consensus size: 37
74502073 TGTTTTCGGT
* *
74502083 TGGACTAGCTCTTATGAGCATCTGGCGTGTAATCTGG
1 TGGATTAGCTCTTATGAGCATCTGGCGTGTTATCTGG
* * **
74502120 TGGATTAGCTTTTATGAGCATCTGGTGTGTTATAAGG
1 TGGATTAGCTCTTATGAGCATCTGGCGTGTTATCTGG
* * * * * *
74502157 TGTATTAGTTTTTATAAGCATCTAGCGTGTTAT-TCGT
1 TGGATTAGCTCTTATGAGCATCTGGCGTGTTATCT-GG
* * *
74502194 TGGATTAGCTCTTATGACCATAT-GCAGTGTTATCGGG
1 TGGATTAGCTCTTATGAGCATCTGGC-GTGTTATCTGG
74502231 TGGATTAGCTCTTA
1 TGGATTAGCTCTTA
74502245 CAAGCAATTG
Statistics
Matches: 101, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
36 2 0.02
37 99 0.98
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.40
Consensus pattern (37 bp):
TGGATTAGCTCTTATGAGCATCTGGCGTGTTATCTGG
Found at i:74502250 original size:74 final size:74
Alignment explanation
Indices: 74502073--74502250 Score: 178
Period size: 74 Copynumber: 2.4 Consensus size: 74
74502063 TGTTTCAGCA
* * * * * * *
74502073 TGTTTTCGGTTGGACTAGCTCTTATGAGCATCTGGCGTGTAATCTGGTGGATTAGCTTTTATGAG
1 TGTTATCGGGTGGATTAGCTCTTATAAGCATCTAGCGTGTAATCTGGTGGATTAGCTCTTATGAC
* **
74502138 CATCTGGTG
66 CATATGCAG
** * * * * *
74502147 TGTTATAAGGTGTATTAGTTTTTATAAGCATCTAGCGTGTTAT-TCGTTGGATTAGCTCTTATGA
1 TGTTATCGGGTGGATTAGCTCTTATAAGCATCTAGCGTGTAATCT-GGTGGATTAGCTCTTATGA
74502211 CCATATGCAG
65 CCATATGCAG
*
74502221 TGTTATCGGGTGGATTAGCTCTTACAAGCA
1 TGTTATCGGGTGGATTAGCTCTTATAAGCA
74502251 ATTGTCATGT
Statistics
Matches: 80, Mismatches: 23, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
73 1 0.01
74 79 0.99
ACGTcount: A:0.21, C:0.14, G:0.26, T:0.39
Consensus pattern (74 bp):
TGTTATCGGGTGGATTAGCTCTTATAAGCATCTAGCGTGTAATCTGGTGGATTAGCTCTTATGAC
CATATGCAG
Found at i:74514690 original size:46 final size:46
Alignment explanation
Indices: 74514640--74514813 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 46
74514630 GTTGAGCATT
*
74514640 CGAACTCGTTGAGTTGAATCCGAGTTCACTTATGGATGCGAATGTC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* * *
74514686 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TC
* * * * *
74514733 TGAACTCGTTGAGTTGAGTCTGAGTTCACTTGTGGATGCGAACGCC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
* *
74514779 CGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
74514814 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 17, Indels: 18
0.74 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 57 0.56
47 27 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC
Found at i:74521495 original size:29 final size:29
Alignment explanation
Indices: 74521432--74521499 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
74521422 TAATCAACCA
74521432 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
74521461 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
74521490 CGCACACTTA
1 CGCACACTTA
74521500 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:74521611 original size:174 final size:174
Alignment explanation
Indices: 74521321--74521648 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
74521311 AACTCAAGGT
* * *
74521321 ACTTACCTTTTCCGCTGTCCAAAGTTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
74521386 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
74521451 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
74521495 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
74521560 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
74521625 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
74521649 TGTACAATTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:74521640 original size:29 final size:30
Alignment explanation
Indices: 74521601--74521679 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
74521591 CTTAATAATC
74521601 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
74521631 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
74521660 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
74521680 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:74540117 original size:25 final size:25
Alignment explanation
Indices: 74540071--74540119 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
74540061 CGATATAAAA
* *
74540071 TGTAAGAAATGTGTATTGTCTGTTG
1 TGTAAGAAATGGGTATTATCTGTTG
74540096 TGTAAGAAATGGGT-TCTATCTGTT
1 TGTAAGAAATGGGTAT-TATCTGTT
74540120 AGACTTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.24, C:0.06, G:0.27, T:0.43
Consensus pattern (25 bp):
TGTAAGAAATGGGTATTATCTGTTG
Found at i:74542349 original size:24 final size:24
Alignment explanation
Indices: 74542320--74542376 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
74542310 GACTGCACGG
*
74542320 TGTGGTCAAACCAATC-ATTTACGT
1 TGTGGTCAAACCAATCAATAT-CGT
* * *
74542344 TGTGGTTAAGCCACTCAATATCGT
1 TGTGGTCAAACCAATCAATATCGT
74542368 TGTGGTCAA
1 TGTGGTCAA
74542377 GTCACTCGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (24 bp):
TGTGGTCAAACCAATCAATATCGT
Found at i:74543796 original size:20 final size:19
Alignment explanation
Indices: 74543767--74543808 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
74543757 GTATGGTAAG
74543767 GGGGAGAAAAATGGCAATA
1 GGGGAGAAAAATGGCAATA
74543786 GGGGAGAAAAATGGCAATA
1 GGGGAGAAAAATGGCAATA
74543805 GGGG
1 GGGG
74543809 GGACAAAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.43, C:0.05, G:0.43, T:0.10
Consensus pattern (19 bp):
GGGGAGAAAAATGGCAATA
Found at i:74546653 original size:2 final size:2
Alignment explanation
Indices: 74546646--74546672 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
74546636 ACATTGAGAG
74546646 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
74546673 TATGAATTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:74546770 original size:55 final size:54
Alignment explanation
Indices: 74546711--74546838 Score: 141
Period size: 55 Copynumber: 2.3 Consensus size: 54
74546701 AGTTTTTTTT
* * *
74546711 TATTTTACAAGATGTTT-TAAAAAATTATCATATATATATTTTTAATATTTTATTA
1 TATTTTACAAAATATTTGT-AAAAATTATCATATACAT-TTTTTAATATTTTATTA
* * *
74546766 TATTTTTATAAAATATTTGTCAAAATTGTCATATACATTTTTTAATATTTTATTA
1 TA-TTTTACAAAATATTTGTAAAAATTATCATATACATTTTTTAATATTTTATTA
* *
74546821 TATTCTTATAGAATATTT
1 TATT-TTACAAAATATTT
74546839 ATCTATCTCC
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
54 2 0.03
55 33 0.52
56 27 0.43
57 1 0.02
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (54 bp):
TATTTTACAAAATATTTGTAAAAATTATCATATACATTTTTTAATATTTTATTA
Found at i:74559114 original size:29 final size:28
Alignment explanation
Indices: 74559082--74559182 Score: 82
Period size: 28 Copynumber: 3.6 Consensus size: 28
74559072 TTTATTAATC
74559082 AATATAAATATAATTTTTAACAATTTCTT
1 AATATAAATATAATTTTTAACAATTT-TT
* * *
74559111 AATATAAATACAA-TTTTAATATTTTTTT
1 AATATAAATATAATTTTTAACA-ATTTTT
* * * *
74559139 AAT-T-ATTTTAATTTATAAGATATTATTT
1 AATATAAATATAATTTTTAACA-ATT-TTT
74559167 AATATAAATATAATTT
1 AATATAAATATAATTT
74559183 CAATCATTTT
Statistics
Matches: 56, Mismatches: 11, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
26 4 0.07
27 10 0.18
28 18 0.32
29 16 0.29
30 8 0.14
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (28 bp):
AATATAAATATAATTTTTAACAATTTTT
Found at i:74562031 original size:29 final size:29
Alignment explanation
Indices: 74562008--74562064 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
74561998 TATTATTGTT
*
74562008 ATTATTTTATTATATTAT-AAATTAAATTG
1 ATTATATTATTATATTATGAAATT-AATTG
*
74562037 ATTATATTATTATATTATGAAATAAATT
1 ATTATATTATTATATTATGAAATTAATT
74562065 AAGAAAAGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTATATTATTATATTATGAAATTAATTG
Found at i:74568407 original size:33 final size:32
Alignment explanation
Indices: 74568365--74568438 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 32
74568355 AAATGAGTAA
74568365 ATTTGTATTATTTA-TATATAATTAGTAAAAAGAT
1 ATTT-TATTATTTATTAT-TAATTAGT-AAAAGAT
74568399 ATTTTATTATTTATTATTAATTAGTAAAAGAT
1 ATTTTATTATTTATTATTAATTAGTAAAAGAT
74568431 -TTTT-TTAT
1 ATTTTATTAT
74568439 ATGATAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.10
31 4 0.10
32 7 0.18
33 17 0.44
34 7 0.18
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (32 bp):
ATTTTATTATTTATTATTAATTAGTAAAAGAT
Found at i:74568743 original size:21 final size:21
Alignment explanation
Indices: 74568700--74568748 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
74568690 TAAGAAATAA
* * *
74568700 TAATAAT-TATTAAGTTAATG
1 TAATAATATAATAAATTAAAG
74568720 TAATAATATAATAAATTAAAG
1 TAATAATATAATAAATTAAAG
*
74568741 TAAAAATA
1 TAATAATA
74568749 AAAGATAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (21 bp):
TAATAATATAATAAATTAAAG
Found at i:74575046 original size:6 final size:6
Alignment explanation
Indices: 74575035--74575080 Score: 85
Period size: 6 Copynumber: 7.8 Consensus size: 6
74575025 AGGATTGCAA
74575035 ATTTTC ATTTTC ATTTTC A-TTTC ATTTTC ATTTTC ATTTTC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
74575081 TGAAAACTTA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.67
Consensus pattern (6 bp):
ATTTTC
Found at i:74575059 original size:17 final size:18
Alignment explanation
Indices: 74575035--74575080 Score: 85
Period size: 17 Copynumber: 2.6 Consensus size: 18
74575025 AGGATTGCAA
74575035 ATTTTCATTTTCATTTTC
1 ATTTTCATTTTCATTTTC
74575053 A-TTTCATTTTCATTTTC
1 ATTTTCATTTTCATTTTC
74575070 ATTTTCATTTT
1 ATTTTCATTTT
74575081 TGAAAACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 17 0.63
18 10 0.37
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTCATTTTCATTTTC
Found at i:74575065 original size:23 final size:23
Alignment explanation
Indices: 74575035--74575079 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
74575025 AGGATTGCAA
74575035 ATTTTCATTTTCATTTTCATTTC
1 ATTTTCATTTTCATTTTCATTTC
74575058 ATTTTCATTTTCATTTTCATTT
1 ATTTTCATTTTCATTTTCATTT
74575080 TTGAAAACTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.67
Consensus pattern (23 bp):
ATTTTCATTTTCATTTTCATTTC
Found at i:74578699 original size:20 final size:21
Alignment explanation
Indices: 74578655--74578705 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
74578645 TTTGGTATAT
*
74578655 TTTTCAATGTCTTAGTTTTTA
1 TTTTCAATATCTTAGTTTTTA
* *
74578676 TTTTCAATATC-TATTTTTTC
1 TTTTCAATATCTTAGTTTTTA
*
74578696 TTTTCCATAT
1 TTTTCAATAT
74578706 TCCATTGATC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 16 0.62
21 10 0.38
ACGTcount: A:0.20, C:0.14, G:0.04, T:0.63
Consensus pattern (21 bp):
TTTTCAATATCTTAGTTTTTA
Found at i:74580829 original size:21 final size:20
Alignment explanation
Indices: 74580793--74580847 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
74580783 CAGTTTCCAA
*
74580793 TGCCAACGTCTTTTTTTTA-
1 TGCCAATGTCTTTTTTTTAT
*
74580812 TGTCAATGTCCTTTTTTTTAT
1 TGCCAATGT-CTTTTTTTTAT
74580833 TGCCAATGTCTTTTT
1 TGCCAATGTCTTTTT
74580848 GGTGGAGCCA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 7 0.23
20 16 0.52
21 8 0.26
ACGTcount: A:0.15, C:0.18, G:0.11, T:0.56
Consensus pattern (20 bp):
TGCCAATGTCTTTTTTTTAT
Found at i:74581925 original size:24 final size:24
Alignment explanation
Indices: 74581893--74581947 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
74581883 AGGTGCATTT
*
74581893 ATACAAAGGACTCAATAGTGGCAA
1 ATACAAAGGACTCAATAATGGCAA
*
74581917 ATACAAAGGACTCACTAATGGCAA
1 ATACAAAGGACTCAATAATGGCAA
74581941 ATACAAA
1 ATACAAA
74581948 AATTAAAAGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.49, C:0.18, G:0.16, T:0.16
Consensus pattern (24 bp):
ATACAAAGGACTCAATAATGGCAA
Found at i:74586768 original size:13 final size:13
Alignment explanation
Indices: 74586750--74586775 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74586740 AGTTCACATT
74586750 TTTCTTATATTTG
1 TTTCTTATATTTG
74586763 TTTCTTATATTTG
1 TTTCTTATATTTG
74586776 ACATCTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (13 bp):
TTTCTTATATTTG
Found at i:74596569 original size:31 final size:31
Alignment explanation
Indices: 74596534--74596598 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
74596524 TTTTTTTGTC
*
74596534 TAATTTAGTACGTAAATATGACAATTTTTCT
1 TAATTTAGTACCTAAATATGACAATTTTTCT
* * *
74596565 TAATTTAGTACCTAAATTTGATACTTTTTCT
1 TAATTTAGTACCTAAATATGACAATTTTTCT
74596596 TAA
1 TAA
74596599 GTTGATACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.48
Consensus pattern (31 bp):
TAATTTAGTACCTAAATATGACAATTTTTCT
Found at i:74597075 original size:22 final size:23
Alignment explanation
Indices: 74597048--74597097 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
74597038 GTAATTTATA
* *
74597048 TAAATTTAATAAATT-T-AAGTAT
1 TAAATTAAAAAAATTATCAAGT-T
74597070 TAAATTAAAAAAATTATCAAGTT
1 TAAATTAAAAAAATTATCAAGTT
74597093 TAAAT
1 TAAAT
74597098 ATCAAATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.54
23 7 0.29
24 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (23 bp):
TAAATTAAAAAAATTATCAAGTT
Found at i:74598838 original size:21 final size:21
Alignment explanation
Indices: 74598799--74598838 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
74598789 ATATCAAATC
* **
74598799 TTATAAATAGTGAGGTCAAGT
1 TTATAAACAGTGAAATCAAGT
74598820 TTATAAACAGTGAAATCAA
1 TTATAAACAGTGAAATCAA
74598839 AATATAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.30
Consensus pattern (21 bp):
TTATAAACAGTGAAATCAAGT
Found at i:74603634 original size:18 final size:18
Alignment explanation
Indices: 74603613--74603649 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
74603603 ATGTGTTTAG
*
74603613 TTATTTTTATTTAATTAA
1 TTATTTTAATTTAATTAA
*
74603631 TTATTTTAATTTATTTAA
1 TTATTTTAATTTAATTAA
74603649 T
1 T
74603650 AATATATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTTAATTTAATTAA
Found at i:74603643 original size:22 final size:22
Alignment explanation
Indices: 74603618--74603673 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
74603608 TTTAGTTATT
74603618 TTTATTTAATTAAT-TATTTTAA
1 TTTATTTAA-TAATATATTTTAA
*
74603640 TTTATTTAATAATATATTTTTA
1 TTTATTTAATAATATATTTTAA
*
74603662 TTTCATATAATA
1 TTT-ATTTAATA
74603674 TGAAATAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
21 4 0.13
22 19 0.63
23 7 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTATTTAATAATATATTTTAA
Found at i:74603661 original size:18 final size:18
Alignment explanation
Indices: 74603614--74603674 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 18
74603604 TGTGTTTAGT
74603614 TATTTTTATTTAATTAATTA
1 TATTTTTATTTAA-TAA-TA
*
74603634 TTTTAATTTATTTAATAATA
1 TATT--TTTATTTAATAATA
74603654 TATTTTTATTTCATATAATA
1 TATTTTTATTT-A-ATAATA
74603674 T
1 T
74603675 GAAATAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
18 7 0.20
19 1 0.03
20 15 0.43
21 3 0.09
22 9 0.26
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (18 bp):
TATTTTTATTTAATAATA
Found at i:74603715 original size:34 final size:36
Alignment explanation
Indices: 74603648--74603716 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
74603638 AATTTATTTA
*
74603648 ATAATATATTTTTATTTCATATAATATGAAATAATT
1 ATAATATATTTTTATCTCATATAATATGAAATAATT
*
74603684 ATAATATATTATTTATCT-ATA-AATTTG-AATAAT
1 ATAATATATT-TTTATCTCATATAATATGAAATAAT
74603717 ATTTTTGATA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
34 6 0.20
35 5 0.17
36 13 0.43
37 6 0.20
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.49
Consensus pattern (36 bp):
ATAATATATTTTTATCTCATATAATATGAAATAATT
Found at i:74606615 original size:2 final size:2
Alignment explanation
Indices: 74606608--74606637 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
74606598 ATGAGCAAAA
74606608 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
74606638 TAAAGTAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:74607126 original size:45 final size:45
Alignment explanation
Indices: 74607059--74607144 Score: 163
Period size: 45 Copynumber: 1.9 Consensus size: 45
74607049 GTGTCATAAA
74607059 ACAAATATATATACACAATGTTTTAGTACAACCACTAGTATATAT
1 ACAAATATATATACACAATGTTTTAGTACAACCACTAGTATATAT
*
74607104 ACAAATATATATACACATTGTTTTAGTACAACCACTAGTAT
1 ACAAATATATATACACAATGTTTTAGTACAACCACTAGTAT
74607145 CAATTGAAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (45 bp):
ACAAATATATATACACAATGTTTTAGTACAACCACTAGTATATAT
Found at i:74615685 original size:33 final size:33
Alignment explanation
Indices: 74615643--74615740 Score: 178
Period size: 33 Copynumber: 3.0 Consensus size: 33
74615633 GGGGTGTCAG
74615643 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
1 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
74615676 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
1 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
* *
74615709 ATGCGTGGGGCGTGGTGGCCAAGGCTGAGGGG
1 ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGG
74615741 TATGGTTGCT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 63 1.00
ACGTcount: A:0.16, C:0.17, G:0.51, T:0.15
Consensus pattern (33 bp):
ATGCGTGGAGCGTGGTGACCAAGGCTGAGGGGC
Found at i:74616709 original size:64 final size:64
Alignment explanation
Indices: 74616636--74616758 Score: 203
Period size: 64 Copynumber: 1.9 Consensus size: 64
74616626 ATTCATAACA
*
74616636 CATCTAGTTA-GGAGCATTTGATTCATTTCGATCATAACATCCTAATTATTTGACATAAGCATCG
1 CATCTAGTTACGG-GCATTTGATTCATTTCGAACATAACATCCTAATTATTTGACATAAGCATCG
* *
74616700 CATCTAGTTACGGGCATTTGATTCATTTCGAACATAGCATCCTAATTATTTGGCATAAG
1 CATCTAGTTACGGGCATTTGATTCATTTCGAACATAACATCCTAATTATTTGACATAAG
74616759 GATAGATACA
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 53 0.96
65 2 0.04
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (64 bp):
CATCTAGTTACGGGCATTTGATTCATTTCGAACATAACATCCTAATTATTTGACATAAGCATCG
Found at i:74616935 original size:44 final size:44
Alignment explanation
Indices: 74616875--74617129 Score: 144
Period size: 44 Copynumber: 5.7 Consensus size: 44
74616865 GATTACAAAC
74616875 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGT-GTCAGGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAG-CAGGT
* * ** *
74616919 CTTATCTCCCTGAAGTTGCAGTGGTGCAGACTGAAGATAG-AGAAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG-TAGCAG-GT
* * * * * * ** *
74616964 TTTATTTCCCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAG-------T-AGCAGGT
** * * * * *
74617016 CTTATCTGTCTGAAGTTACAATAGAGCA-GAT-AA-TAGCAAGC
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAGCAGGT
* *
74617057 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAGT-GACAGGT
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAG-CAGGT
*
74617101 CTTATTTCCCTGAAGTTGCAGTAGAGCAG
1 CTTATCTCCCTGAAGTTGCAGTAGAGCAG
74617130 ACCAAAGACG
Statistics
Matches: 158, Mismatches: 38, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
41 25 0.16
42 3 0.02
43 3 0.02
44 65 0.41
45 32 0.20
46 1 0.01
50 2 0.01
51 3 0.02
52 22 0.14
53 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTGAAGTAGCAGGT
Found at i:74616974 original size:89 final size:89
Alignment explanation
Indices: 74616823--74616999 Score: 205
Period size: 89 Copynumber: 2.0 Consensus size: 89
74616813 TATCGGTGAA
* *
74616823 GTCAGATCTTATCTCCCTGAAGTTACAGTGGAATAGATCGAAGATTACAAACCTTATCTCCCTGA
1 GTCAGATCTTATCTCCCTGAAGTTACAGTGGAACAGATCGAAGATTACAAACCTTATCTCCCTAA
* *
74616888 AGTTGCAGTAGAGCAGGTTGAAGT
66 AGTTGCAGTAGAACAGATTGAAGT
* * ** * ** *
74616912 GTCAGGTCTTATCTCCCTGAAGTTGCAGTGGTGCAGA-CTGAAGA-TAGAGAATTTTATTTCCCT
1 GTCAGATCTTATCTCCCTGAAGTTACAGTGGAACAGATC-GAAGATTACA-AACCTTATCTCCCT
*
74616975 AAAGTTGCAGTGGAACAGATTGAAG
64 AAAGTTGCAGTAGAACAGATTGAAG
74617000 CTATAAATAA
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
88 4 0.05
89 69 0.95
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (89 bp):
GTCAGATCTTATCTCCCTGAAGTTACAGTGGAACAGATCGAAGATTACAAACCTTATCTCCCTAA
AGTTGCAGTAGAACAGATTGAAGT
Found at i:74617460 original size:44 final size:46
Alignment explanation
Indices: 74617411--74617520 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
74617401 CGATTGTAGT
* ** * *
74617411 CTTATCTCCCTGAAGTTGCAATGGAGCA-GAT-CGAAGCCACAATC
1 CTTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAAGACACAAAC
* * * *
74617455 TTTATCTCTCTGAAGTTGCAGTAGAGCAGGATAAAAATACACAAAC
1 CTTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAAGACACAAAC
74617501 CTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCA
74617521 GAGGAACAGG
Statistics
Matches: 53, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 24 0.45
45 3 0.06
46 26 0.49
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (46 bp):
CTTATCTCCCTGAAGTTGCAATAGAGCAGGATAAAAAGACACAAAC
Found at i:74620985 original size:21 final size:21
Alignment explanation
Indices: 74620938--74620986 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
74620928 CTCGAGATCA
*
74620938 TAAACCCAAGACCTTAGACTT
1 TAAACCCAAGACCTTAGAATT
* *
74620959 TGAACCCAAGATCTTA-AATAT
1 TAAACCCAAGACCTTAGAAT-T
74620980 TAAACCC
1 TAAACCC
74620987 TAAACTCGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.41, C:0.27, G:0.08, T:0.24
Consensus pattern (21 bp):
TAAACCCAAGACCTTAGAATT
Found at i:74621081 original size:119 final size:119
Alignment explanation
Indices: 74620947--74621186 Score: 480
Period size: 119 Copynumber: 2.0 Consensus size: 119
74620937 ATAAACCCAA
74620947 GACCTTAGACTTTGAACCCAAGATCTTAAATATTAAACCCTAAACTCGTGAGTTATTAATGTTTA
1 GACCTTAGACTTTGAACCCAAGATCTTAAATATTAAACCCTAAACTCGTGAGTTATTAATGTTTA
74621012 TTAATAATCTTTATAATTGATTAATATTTAATTATGCTTGAATAAAATTATTAG
66 TTAATAATCTTTATAATTGATTAATATTTAATTATGCTTGAATAAAATTATTAG
74621066 GACCTTAGACTTTGAACCCAAGATCTTAAATATTAAACCCTAAACTCGTGAGTTATTAATGTTTA
1 GACCTTAGACTTTGAACCCAAGATCTTAAATATTAAACCCTAAACTCGTGAGTTATTAATGTTTA
74621131 TTAATAATCTTTATAATTGATTAATATTTAATTATGCTTGAATAAAATTATTAG
66 TTAATAATCTTTATAATTGATTAATATTTAATTATGCTTGAATAAAATTATTAG
74621185 GA
1 GA
74621187 ACAATATTTT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (119 bp):
GACCTTAGACTTTGAACCCAAGATCTTAAATATTAAACCCTAAACTCGTGAGTTATTAATGTTTA
TTAATAATCTTTATAATTGATTAATATTTAATTATGCTTGAATAAAATTATTAG
Found at i:74632115 original size:47 final size:47
Alignment explanation
Indices: 74632034--74632284 Score: 328
Period size: 47 Copynumber: 5.4 Consensus size: 47
74632024 TAATTGAATA
* * *
74632034 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGAG-ATAAGGCCGAATGGCCAATGTGATG
** *
74632082 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
*
74632129 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
74632176 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
74632223 AATGTGAGCATGTGTATGTGAGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
74632270 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
74632285 AATTGTGATA
Statistics
Matches: 182, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.01
47 157 0.86
48 17 0.09
49 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:74632471 original size:37 final size:37
Alignment explanation
Indices: 74632415--74632494 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
74632405 CCGGACTCTA
* * *
74632415 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
74632452 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
74632489 AAGACT
1 AAGACT
74632495 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:74634348 original size:40 final size:40
Alignment explanation
Indices: 74634291--74634753 Score: 736
Period size: 40 Copynumber: 11.6 Consensus size: 40
74634281 TCGAATGATG
* *
74634291 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
74634331 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCAAGTTGATATA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAG-TGATATA
*
74634371 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
74634411 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
74634451 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
74634491 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
74634531 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
74634571 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
74634611 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
74634651 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
74634691 TCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
74634731 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
74634754 ATCATGCTGG
Statistics
Matches: 400, Mismatches: 18, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
39 1 0.00
40 377 0.94
41 22 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:74639122 original size:47 final size:47
Alignment explanation
Indices: 74639041--74639291 Score: 328
Period size: 47 Copynumber: 5.4 Consensus size: 47
74639031 TAATTGAATA
* * *
74639041 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGAG-ATAAGGCCGAATGGCCAATGTGATG
** *
74639089 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
*
74639136 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
74639183 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
* * * *
74639230 AATGTGAGCATGTGTATGTGAGATAGGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
74639277 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
74639292 AATTGTGATA
Statistics
Matches: 182, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
45 6 0.03
46 1 0.01
47 157 0.86
48 17 0.09
49 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.33, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:74639478 original size:37 final size:37
Alignment explanation
Indices: 74639422--74639501 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
74639412 CCGGACTCTA
* * *
74639422 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
74639459 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
74639496 AAGACT
1 AAGACT
74639502 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:74641458 original size:17 final size:18
Alignment explanation
Indices: 74641436--74641479 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
74641426 GCCAATCTGA
74641436 GCATGTGGGAC-ACACAG
1 GCATGTGGGACTACACAG
* *
74641453 GCATGTGGGCCTACACGG
1 GCATGTGGGACTACACAG
74641471 GCATGTGGG
1 GCATGTGGG
74641480 TCCATAATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.20, C:0.23, G:0.41, T:0.16
Consensus pattern (18 bp):
GCATGTGGGACTACACAG
Found at i:74647677 original size:3 final size:3
Alignment explanation
Indices: 74647669--74647754 Score: 61
Period size: 3 Copynumber: 29.0 Consensus size: 3
74647659 TCATTATTGC
* *
74647669 TAT TAT TAT TAT T-T TCTT TAT TAT TAT TAT TTT TACT T-T TAT TAT
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA-T TAT TAT TAT
* * * * * *
74647714 TTT TAT TAT TAC TAT T-G TAT TAC TAC TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
74647755 ACTGTTTTCT
Statistics
Matches: 65, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
2 5 0.08
3 56 0.86
4 4 0.06
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:74647692 original size:18 final size:20
Alignment explanation
Indices: 74647669--74647726 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
74647659 TCATTATTGC
74647669 TATTATTATTATTTT-C-TT
1 TATTATTATTATTTTACTTT
74647687 TATTATTATTATTTTTACTTT
1 TATTATTATTA-TTTTACTTT
*
74647708 TATTATTTTTATTATTACT
1 TATTATTATTATT-TTACT
74647727 ATTGTATTAC
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 11 0.31
19 4 0.11
20 3 0.09
21 17 0.49
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (20 bp):
TATTATTATTATTTTACTTT
Found at i:74647703 original size:15 final size:15
Alignment explanation
Indices: 74647671--74647729 Score: 77
Period size: 15 Copynumber: 3.9 Consensus size: 15
74647661 ATTATTGCTA
74647671 TTATTATTATT-TTCT
1 TTATTATTATTATT-T
74647686 TTATTATTATTATTT
1 TTATTATTATTATTT
74647701 TTACTT-TTATTATTT
1 TTA-TTATTATTATTT
*
74647716 TTATTATTACTATT
1 TTATTATTATTATT
74647730 GTATTACTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
14 2 0.05
15 34 0.85
16 4 0.10
ACGTcount: A:0.24, C:0.05, G:0.00, T:0.71
Consensus pattern (15 bp):
TTATTATTATTATTT
Found at i:74653750 original size:9 final size:9
Alignment explanation
Indices: 74653736--74653800 Score: 58
Period size: 9 Copynumber: 6.7 Consensus size: 9
74653726 GGGTTGGATA
74653736 AAAAAAAAG
1 AAAAAAAAG
74653745 AAAAAAAAG
1 AAAAAAAAG
*
74653754 AAGAAAAAG
1 AAAAAAAAG
74653763 AATAAGAAGAAG
1 AA-AA-AA-AAG
* *
74653775 AATAAGAAG
1 AAAAAAAAG
74653784 AAGAAATAAAG
1 AA-AAA-AAAG
74653795 AAAAAA
1 AAAAAA
74653801 CTTTCTAAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
9 25 0.56
10 7 0.16
11 8 0.18
12 5 0.11
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:74653752 original size:12 final size:12
Alignment explanation
Indices: 74653735--74653800 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
74653725 AGGGTTGGAT
74653735 AAAAAAAAAGAA
1 AAAAAAAAAGAA
*
74653747 AAAAAAGAAGAA
1 AAAAAAAAAGAA
* *
74653759 AAAGAATAAGAA
1 AAAAAAAAAGAA
* * *
74653771 GAAGAATAAGAA
1 AAAAAAAAAGAA
*
74653783 GAAGAAATAAAGAA
1 -AA-AAAAAAAGAA
74653797 AAAA
1 AAAA
74653801 CTTTCTAAAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
12 34 0.77
13 3 0.07
14 7 0.16
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:74654351 original size:88 final size:88
Alignment explanation
Indices: 74654266--74654855 Score: 813
Period size: 88 Copynumber: 6.7 Consensus size: 88
74654256 TCTTATCTAA
** * * *
74654266 TTGAAGTTTTAGCAGAGTAGATCGAGGCTACAAATCTCTTCTCTCTAAAATGGCATTGGAGCGGC
1 TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
* *
74654331 TCAAAGCCACAGTTCGTATCTCT
66 TCGAAGCCACAGTTCGTATCTCC
* * *
74654354 TTGAAGTTCCAGCGGAGTAGATCAATGCTACAAATATCTTCTCCCTGAAATGGCATTGGAGCGGC
1 TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
* *
74654419 TCGAAGCCATAGTTCGTATCTTC
66 TCGAAGCCACAGTTCGTATCTCC
* * * * *
74654442 TTGAAGTTCCAGAGGAGTAGATCAAGGCTAAAAATCTCTTCTCCTTGAAATGGCATTGGAGCGGA
1 TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
74654507 TCGAAGCCACAGTTCGTATCTCC
66 TCGAAGCCACAGTTCGTATCTCC
* ** *
74654530 TTGAAGTTCCAGCGGAGTAGGTCGAGGGAACAAATCCCTTCTCCCTGAAATGGCATTGGAGCGGC
1 TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
*
74654595 TCGAAGCCACAATTCGTATCTCC
66 TCGAAGCCACAGTTCGTATCTCC
* * * *
74654618 TTGAAGTTCCAGTGGAGAAGATCGAGGCTACAAATCTCTTCTCCCTAAAATGGCATTGGAACGGC
1 TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
* * *
74654683 TTGAAGCCACAGCTCGTATCTTC
66 TCGAAGCCACAGTTCGTATCTCC
* * ** *
74654706 TTGAAGTTCTAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTAAAATAACATTAGAGCGGC
1 TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
* *
74654771 TCGAAGCCACAATCCGTATCTCC
66 TCGAAGCCACAGTTCGTATCTCC
* * *
74654794 TTGAAATTCCAGCAGAGTAGATCG-GAGCTACAAATCTCTTCTCCCTGAAATGGTATTGGAGC
1 TTGAAGTTCCAGCGGAGTAGATCGAG-GCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGC
74654856 AGACTAAAGA
Statistics
Matches: 439, Mismatches: 62, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
87 1 0.00
88 438 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (88 bp):
TTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGC
TCGAAGCCACAGTTCGTATCTCC
Found at i:74654530 original size:44 final size:44
Alignment explanation
Indices: 74654313--74654710 Score: 132
Period size: 44 Copynumber: 9.0 Consensus size: 44
74654303 CTTCTCTCTA
* * * *
74654313 AAATGGCATTGGAGCGGCTCAAAGCCACAGTTCGTATCTCTTTG
1 AAATGGCATTGGAGCGGATCGAAGCCACAATTCGTATCTCCTTG
* ** ** ** * *
74654357 AAGTTCCAGCGGAGTAGATC-AATGCTACAAATATC-T-TCTCCCTG
1 AAATGGCATTGGAGCGGATCGAA-GCCAC-AAT-TCGTATCTCCTTG
* * * *
74654401 AAATGGCATTGGAGCGGCTCGAAGCCATAGTTCGTATCTTCTTG
1 AAATGGCATTGGAGCGGATCGAAGCCACAATTCGTATCTCCTTG
* ** ** ** * *
74654445 AAGTTCCAGAGGAGTAGATC-AAGGCTAAAAATCTC-T-TCTCCTTG
1 AAATGGCATTGGAGCGGATCGAA-GC-CACAAT-TCGTATCTCCTTG
*
74654489 AAATGGCATTGGAGCGGATCGAAGCCACAGTTCGTATCTCCTTG
1 AAATGGCATTGGAGCGGATCGAAGCCACAATTCGTATCTCCTTG
* ** ** * * ** * * *
74654533 AAGTTCCAGCGGAGTAGG-TCGAGGGAACAAATCCCT-TCTCCCTG
1 AAATGGCATTGGAG-CGGATCGAAGCCAC-AATTCGTATCTCCTTG
*
74654577 AAATGGCATTGGAGCGGCTCGAAGCCACAATTCGTATCTCCTTG
1 AAATGGCATTGGAGCGGATCGAAGCCACAATTCGTATCTCCTTG
* ** * ** * * * *
74654621 AAGTTCCAGTGGAGAAGATCGAGGCTACAAATCTC-T-TCTCCCTA
1 AAATGGCATTGGAGCGGATCGAAGCCAC-AAT-TCGTATCTCCTTG
* * * ** *
74654665 AAATGGCATTGGAACGGCTTGAAGCCACAGCTCGTATCTTCTTG
1 AAATGGCATTGGAGCGGATCGAAGCCACAATTCGTATCTCCTTG
74654709 AA
1 AA
74654711 GTTCTAGCGG
Statistics
Matches: 235, Mismatches: 99, Indels: 40
0.63 0.26 0.11
Matches are distributed among these distances:
42 6 0.03
43 20 0.09
44 182 0.77
45 21 0.09
46 6 0.03
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (44 bp):
AAATGGCATTGGAGCGGATCGAAGCCACAATTCGTATCTCCTTG
Found at i:74655035 original size:45 final size:44
Alignment explanation
Indices: 74654862--74655041 Score: 175
Period size: 44 Copynumber: 4.1 Consensus size: 44
74654852 GAGCAGACTA
* * * * *
74654862 AAGATACCAATTTTATCTCCCTAAAGTTGTAGT-GGAGCAGATTA
1 AAGATACGAATCTTATCTCCCTGAAGTTGCAGTAGG-GCAGATTG
* ** * *
74654906 AAGCTATAAACCTTATC-CCCTTGAAGTTGCAGTAGGGCAGGTTG
1 AAGATACGAATCTTATCTCCC-TGAAGTTGCAGTAGGGCAGATTG
* * * *
74654950 AAGTTACGAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTG
1 AAGATACGAATCTTATCTCCCTGAAGTTGCAGTAGGGCAGATTG
* *
74654994 AAGATAGCGAATCTTATCTCCCTGAAGTTACAGTGGGGCAGATTG
1 AAGATA-CGAATCTTATCTCCCTGAAGTTGCAGTAGGGCAGATTG
74655039 AAG
1 AAG
74655042 CTACAAACCA
Statistics
Matches: 109, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
43 3 0.03
44 65 0.60
45 41 0.38
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (44 bp):
AAGATACGAATCTTATCTCCCTGAAGTTGCAGTAGGGCAGATTG
Found at i:74655107 original size:140 final size:140
Alignment explanation
Indices: 74654917--74655271 Score: 353
Period size: 140 Copynumber: 2.5 Consensus size: 140
74654907 AGCTATAAAC
*
74654917 CTTATC-CCCTTGAAGTTGCAGTAGG-GCAGGTTGAAGTTACGAGTCTTATCTCCCTGAAGTTGC
1 CTTATCTCCC-TGAAGTTGCAGT-GGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGC
* * * * * ** *
74654980 AGTAGAGCAGACTGAAGATAGCGAATCTTA-TCTCCCTGAAGTTACAGTGGGGCAGATTGAAGCT
64 AGTAGAGCAGACTGAAGACAGCAAATCTCACT-TCCCTAAAATTACAGTGGAACAGATTAAAGCT
74655044 ACAAACCACAAACT
128 ACAAACCAC-AACT
* * *
74655058 -TTATCTTCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCT-AGAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGA-AGTTGCA
** * * *
74655121 GCGGAGCAGATTGAAGACAGCAAATCTCACTTCCTTAAAATTATAGTGGAACAGATTAAAGCTAC
65 GTAGAGCAGACTGAAGACAGCAAATCTCACTTCCCTAAAATTACAGTGGAACAGATTAAAGCTAC
*** * *
74655186 AAGTTACGAGT
130 AAACCACAACT
* ** * * *
74655197 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTG-ATTATAGCAAATCTTATCTCTCTGAAGTTGC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGT-TA-CAAGTCTTATCTCCCTGAAGTTGC
74655261 AGTAGAGCAGA
64 AGTAGAGCAGA
74655272 TTAAAGCTAT
Statistics
Matches: 173, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
139 7 0.04
140 134 0.77
141 31 0.18
142 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (140 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAG
TAGAGCAGACTGAAGACAGCAAATCTCACTTCCCTAAAATTACAGTGGAACAGATTAAAGCTACA
AACCACAACT
Found at i:74655494 original size:45 final size:45
Alignment explanation
Indices: 74655374--74655498 Score: 146
Period size: 44 Copynumber: 2.8 Consensus size: 45
74655364 TATTGAAGCC
* * * * *
74655374 ACAAACCTTATCCCCCTGAAGTTGCAATGGAGCA-AGTTGAAGTT
1 ACAAATCTTATCTCCTTGAAGTTGCAATGGAGCAGAGCTGAAGAT
* * *
74655418 ACAAGTCTTATTTCCTTGAAGTTGCAGTGGAGCAGA-CTGAAGAT
1 ACAAATCTTATCTCCTTGAAGTTGCAATGGAGCAGAGCTGAAGAT
*
74655462 AGCAAATCTTATCTCCTTGAAGTTGTAATGGAGCAGA
1 A-CAAATCTTATCTCCTTGAAGTTGCAATGGAGCAGA
74655499 TCAAGCTACA
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
44 35 0.52
45 32 0.48
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
ACAAATCTTATCTCCTTGAAGTTGCAATGGAGCAGAGCTGAAGAT
Found at i:74657228 original size:15 final size:15
Alignment explanation
Indices: 74657208--74657264 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
74657198 TGCATGTTTC
*
74657208 ATTATTGCTATTATT
1 ATTATTGTTATTATT
*
74657223 ATTATTTTTACTT-TT
1 ATTATTGTTA-TTATT
*
74657238 ATTATTTTTATTATT
1 ATTATTGTTATTATT
*
74657253 ACTATTG-TATTA
1 ATTATTGTTATTA
74657265 CTACTATCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
14 7 0.19
15 27 0.75
16 2 0.06
ACGTcount: A:0.26, C:0.05, G:0.04, T:0.65
Consensus pattern (15 bp):
ATTATTGTTATTATT
Found at i:74660294 original size:17 final size:18
Alignment explanation
Indices: 74660272--74660314 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
74660262 TTGTGTGGTT
74660272 GGCCGTGTGCAAGACA-A
1 GGCCGTGTGCAAGACATA
*
74660289 GGCCGTGCGCAAGACATA
1 GGCCGTGTGCAAGACATA
74660307 -GCCGTGTG
1 GGCCGTGTG
74660315 GTGCCATGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 22 0.96
18 1 0.04
ACGTcount: A:0.23, C:0.26, G:0.37, T:0.14
Consensus pattern (18 bp):
GGCCGTGTGCAAGACATA
Found at i:74668025 original size:13 final size:12
Alignment explanation
Indices: 74668002--74668031 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
74667992 GACTTAAATT
74668002 AGAAAAAAATAA
1 AGAAAAAAATAA
74668014 AGAAATAAAATAA
1 AGAAA-AAAATAA
74668027 AGAAA
1 AGAAA
74668032 GGGAACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (12 bp):
AGAAAAAAATAA
Found at i:74673315 original size:43 final size:40
Alignment explanation
Indices: 74673225--74673321 Score: 153
Period size: 43 Copynumber: 2.4 Consensus size: 40
74673215 GCATTTGACG
74673225 CAGGTTAGAGCTG--TATATATATATATATATTTGGTACA
1 CAGGTTAGAGCTGTATATATATATATATATATTTGGTACA
74673263 CAGGTTAGAGCTGTATATATATATATATATATTTTTTGGTACA
1 CAGGTTAGAGCTGTATATATATATATATATA---TTTGGTACA
74673306 CAGGTTAGAGCTGTAT
1 CAGGTTAGAGCTGTAT
74673322 TTTTTTTTGA
Statistics
Matches: 54, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
38 13 0.24
40 16 0.30
43 25 0.46
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.40
Consensus pattern (40 bp):
CAGGTTAGAGCTGTATATATATATATATATATTTGGTACA
Found at i:74682468 original size:29 final size:29
Alignment explanation
Indices: 74682426--74682484 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
74682416 AAAGATAAAC
74682426 TTGAAACATTGTTTGATGATAATTTCGAT
1 TTGAAACATTGTTTGATGATAATTTCGAT
74682455 TTGAAACATTGTTTGATGATAATTTCGAT
1 TTGAAACATTGTTTGATGATAATTTCGAT
74682484 T
1 T
74682485 CAGGATCTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (29 bp):
TTGAAACATTGTTTGATGATAATTTCGAT
Found at i:74685797 original size:25 final size:24
Alignment explanation
Indices: 74685739--74685858 Score: 82
Period size: 25 Copynumber: 4.7 Consensus size: 24
74685729 TTATTCTTAT
* *
74685739 TTATTTTATATATATATTTT-TCA
1 TTATTTTATTTATATATTTTAACA
*
74685762 TATATTGTTATTTATATTATTTTAACC
1 T-TATT-TTATTTATA-TATTTTAACA
* *
74685789 TTATTTTATATTATATATTATAAAA
1 TTATTTTAT-TTATATATTTTAACA
* *
74685814 TTATTTTATTATAAATATTATT-ATA
1 TTATTTTATT-TATATATT-TTAACA
74685839 TATATTATTATTTATTATAT
1 T-TATT-TTATTTA-TATAT
74685859 ATTATTTTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 16
0.75 0.10 0.16
Matches are distributed among these distances:
23 1 0.01
24 5 0.06
25 38 0.49
26 22 0.29
27 11 0.14
ACGTcount: A:0.36, C:0.03, G:0.01, T:0.61
Consensus pattern (24 bp):
TTATTTTATTTATATATTTTAACA
Found at i:74685805 original size:7 final size:7
Alignment explanation
Indices: 74685790--74685863 Score: 57
Period size: 7 Copynumber: 10.9 Consensus size: 7
74685780 ATTTTAACCT
*
74685790 TATTTTA
1 TATTATA
74685797 TATTATA
1 TATTATA
74685804 TATTATAA
1 TATTAT-A
* *
74685812 AATTATTT
1 TATTA-TA
74685820 TATTATA
1 TATTATA
*
74685827 -AATAT-
1 TATTATA
74685832 TATTATA
1 TATTATA
74685839 TA-TAT-
1 TATTATA
*
74685844 TATTATT
1 TATTATA
74685851 TATTATA
1 TATTATA
74685858 TATTAT
1 TATTAT
74685864 TTTTCTCAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 2 0.04
6 14 0.26
7 27 0.51
8 9 0.17
9 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TATTATA
Done.