Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 233 of 295
Found at i:74685835 original size:17 final size:16
Alignment explanation
Indices: 74685804--74685866 Score: 69
Period size: 15 Copynumber: 4.1 Consensus size: 16
74685794 TTATATTATA
*
74685804 TATTATAAAATTATTT
1 TATTATAATATTATTT
*
74685820 TATTATAAATATTATTA
1 TATTAT-AATATTATTT
*
74685837 TA-TATATTATTA-TT
1 TATTATAATATTATTT
74685851 TATTAT-ATATTATTT
1 TATTATAATATTATTT
74685866 T
1 T
74685867 TCTCAAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
14 8 0.21
15 12 0.31
16 9 0.23
17 10 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
TATTATAATATTATTT
Found at i:74685836 original size:12 final size:12
Alignment explanation
Indices: 74685819--74685849 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
74685809 TAAAATTATT
74685819 TTATTATAAATA
1 TTATTATAAATA
*
74685831 TTATTATATATA
1 TTATTATAAATA
74685843 TTATTAT
1 TTATTAT
74685850 TTATTATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTATAAATA
Found at i:74685849 original size:32 final size:30
Alignment explanation
Indices: 74685789--74685864 Score: 84
Period size: 32 Copynumber: 2.5 Consensus size: 30
74685779 TATTTTAACC
*
74685789 TTATTTTATATTA-TATATTATAAAATTATT
1 TTATTATATATTATTATATTATAAAATTA-T
**
74685819 TTATTATAAATATTATTATA-TATATTATTAT
1 TTATTAT--ATATTATTATATTATAAAATTAT
74685850 TTATTATATATTATT
1 TTATTATATATTATT
74685865 TTTCTCAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 8 0.20
30 6 0.15
31 8 0.20
32 14 0.35
33 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (30 bp):
TTATTATATATTATTATATTATAAAATTAT
Found at i:74685950 original size:28 final size:30
Alignment explanation
Indices: 74685896--74685955 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 30
74685886 TACATCATTT
74685896 TTTTATATTATTACTATATTTTCATATATA
1 TTTTATATTATTACTATATTTTCATATATA
*
74685926 TTTTATA-T-TTACTA-ATTATTTATATATA
1 TTTTATATTATTACTATATT-TTCATATATA
74685954 TT
1 TT
74685956 GTTTTCCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 17 0.61
29 1 0.04
30 7 0.25
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (30 bp):
TTTTATATTATTACTATATTTTCATATATA
Found at i:74686239 original size:19 final size:19
Alignment explanation
Indices: 74686182--74686239 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
74686172 TTTAAACTCA
*
74686182 TATTATATACACATTTCA-T
1 TATTATATAC-TATTTCATT
* *
74686201 TATTATTTATTTATTT-ATT
1 TATTATATA-CTATTTCATT
74686220 TATTATATACTATTTCATT
1 TATTATATACTATTTCATT
74686239 T
1 T
74686240 TAAATTAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
18 6 0.19
19 25 0.81
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (19 bp):
TATTATATACTATTTCATT
Found at i:74688907 original size:27 final size:27
Alignment explanation
Indices: 74688877--74689055 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
74688867 ATATTGAGCC
* * * *
74688877 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCTACATAGTCATAT
* * *
74688904 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCATAT
*
74688931 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCATA-T
** *
74688959 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCTACATAGTCATA-T
* *
74688986 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCATAT
*
74689013 CGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTACATAGTCATAT
74689040 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
74689056 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 107 0.82
28 23 0.18
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCATAT
Found at i:74689016 original size:82 final size:81
Alignment explanation
Indices: 74688903--74689053 Score: 223
Period size: 82 Copynumber: 1.9 Consensus size: 81
74688893 TATAATCATC
* *
74688903 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
74688968 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
74688985 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
74689049 AGTGC
65 AGTGC
74689054 TATACAATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 16 0.26
82 46 0.74
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:74689625 original size:13 final size:13
Alignment explanation
Indices: 74689607--74689631 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74689597 TACTAAATTT
74689607 TCATGGATTCAAG
1 TCATGGATTCAAG
74689620 TCATGGATTCAA
1 TCATGGATTCAA
74689632 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:74696863 original size:54 final size:55
Alignment explanation
Indices: 74696776--74696953 Score: 186
Period size: 54 Copynumber: 3.3 Consensus size: 55
74696766 ATATTGAGCC
* * * * * *
74696776 CGCACACTCAGTGC-AT-ATAATCATCTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
** * *
74696829 CG-ACACTTAGTGCTA-CATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATAGTC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* ** *
74696883 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATAT
1 CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
74696937 CGCACACTTAGTGCTAT
1 CGCACACTTAGTGCTAT
74696954 ACAATTTAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
52 10 0.10
53 8 0.08
54 65 0.64
55 19 0.19
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATAGTCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:74696893 original size:27 final size:27
Alignment explanation
Indices: 74696776--74696950 Score: 160
Period size: 27 Copynumber: 6.5 Consensus size: 27
74696766 ATATTGAGCC
* * *
74696776 CGCACACTCAGTGC-ATATAATC-ATCT
1 CGCACACTTAGTGCAACATAGTCAAT-T
* * * *
74696802 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAATT
* *
74696829 CG-ACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCAACATAGTC-AATT
** *
74696856 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
74696883 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
74696910 CGCACACTTAGTGCAACATAGTC-ATAT
1 CGCACACTTAGTGCAACATAGTCAAT-T
74696937 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74696951 TATACAATTT
Statistics
Matches: 125, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
26 32 0.26
27 75 0.60
28 18 0.14
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:74696894 original size:81 final size:81
Alignment explanation
Indices: 74696801--74696950 Score: 214
Period size: 81 Copynumber: 1.9 Consensus size: 81
74696791 TATAATCATC
* *
74696801 TCGCACACTTAGTGC-TACGTAATCAAATCG-ACACTTAGTGCTACATAGTCAAACTCGCACACT
1 TCGCACACTTAGTGCAT-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACT
74696864 TAGTGCCGCATGGTCAAT
64 TAGTGCCGCATGGTCAAT
* ** *
74696882 TCGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCACACTTA
1 TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
74696947 GTGC
66 GTGC
74696951 TATACAATTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
81 39 0.64
82 22 0.36
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (81 bp):
TCGCACACTTAGTGCATCATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:74711845 original size:31 final size:31
Alignment explanation
Indices: 74711765--74711847 Score: 141
Period size: 31 Copynumber: 2.7 Consensus size: 31
74711755 CAGTCTCGAT
*
74711765 ATAT-ACTGGGCCGAAGCCATTTCATAAATC
1 ATATCACTGGGCCGAAGCCTTTTCATAAATC
74711795 ATATCACTGGGCCGAAGCCTTTTCATAAATC
1 ATATCACTGGGCCGAAGCCTTTTCATAAATC
*
74711826 ATATCATTGGGCCGAAGCCTTT
1 ATATCACTGGGCCGAAGCCTTT
74711848 ACTGTAAACG
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 4 0.08
31 46 0.92
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (31 bp):
ATATCACTGGGCCGAAGCCTTTTCATAAATC
Found at i:74712142 original size:26 final size:26
Alignment explanation
Indices: 74712065--74712262 Score: 289
Period size: 26 Copynumber: 7.8 Consensus size: 26
74712055 CCTCTTTAAT
**
74712065 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
74712090 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
** **
74712115 AACTGGGGCATAAGTTCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
74712141 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
74712167 AACT--GG-ATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
74712190 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
74712216 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
74712242 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
74712263 GCACTTCCTC
Statistics
Matches: 155, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
23 21 0.14
24 2 0.01
25 35 0.23
26 97 0.63
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:74712193 original size:75 final size:77
Alignment explanation
Indices: 74712065--74712262 Score: 314
Period size: 75 Copynumber: 2.6 Consensus size: 77
74712055 CCTCTTTAAT
**
74712065 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCATAA
1 AACTGGGGCATAAGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTTCAATAAACTGGGGCATAA
**
74712128 GTTCTTTTCGGTA
65 GCCCTTTTCGGTA
74712141 AACTGGGGCATAAGCCCTTTTCAATAAACT-GG-ATAAGCCCTTTTCAATAAACTGGGGCATAAG
1 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAG
74712204 CCCTTTTCGGTA
66 CCCTTTTCGGTA
74712216 AACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTTCAATAAACT-GGGCATAAGCCCTTTT
74712263 GCACTTCCTC
Statistics
Matches: 113, Mismatches: 4, Indels: 8
0.90 0.03 0.06
Matches are distributed among these distances:
74 1 0.01
75 71 0.63
76 10 0.09
77 19 0.17
78 12 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (77 bp):
AACTGGGGCATAAGCCCTTTTCAATAAACTGGGCATAAGCCCTTTTCAATAAACTGGGGCATAAG
CCCTTTTCGGTA
Found at i:74712337 original size:20 final size:20
Alignment explanation
Indices: 74712312--74712398 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
74712302 TTATGAATAC
*
74712312 ATCATGTACATTTCATACAT
1 ATCATGTGCATTTCATACAT
74712332 ATCATGTGCATTTCATACAT
1 ATCATGTGCATTTCATACAT
*
74712352 ATCATGTGCATTTTATACAT
1 ATCATGTGCATTTCATACAT
*
74712372 ATCATGTGCATATCATATCA-
1 ATCATGTGCATTTCATA-CAT
74712392 ATCATGT
1 ATCATGT
74712399 ATATCATATC
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.40
Consensus pattern (20 bp):
ATCATGTGCATTTCATACAT
Found at i:74712462 original size:25 final size:25
Alignment explanation
Indices: 74712434--74712481 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
74712424 ATAATTAAAC
* * *
74712434 CCTAAGGGTATAATGGTCATTTTTA
1 CCTAAGGGCAAAATAGTCATTTTTA
74712459 CCTAAGGGCAAAATAGTCATTTT
1 CCTAAGGGCAAAATAGTCATTTT
74712482 CATACTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (25 bp):
CCTAAGGGCAAAATAGTCATTTTTA
Found at i:74713253 original size:27 final size:27
Alignment explanation
Indices: 74713200--74713559 Score: 256
Period size: 27 Copynumber: 13.3 Consensus size: 27
74713190 TTTCATCCTA
** * * *
74713200 CAAGGGTGCTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
74713227 CAAGGGTGTTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
74713254 CAATGGTATTTCT-ATAATTTTTAGAAAGT
1 CAAGGGTATTT-TGGTAA-TTTTATAAA-C
* * *
74713283 CAAGGGTATTTTTGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
74713310 CAGGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
** * *
74713337 TGAGGGTATTTCGGTAATTTCATAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
74713364 CAATGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
74713391 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
** ** *
74713418 TGAGGGTATTTCAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * * *
74713445 CAGGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTATAAAC
* ** *
74713471 CTAGGGTATTTTGGTAATTTTATTGAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
* *
74713498 CGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTATAAAC
* * *
74713525 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTATAAAC
*
74713552 CGAGGGTA
1 CAAGGGTA
74713560 AAACAGTAAT
Statistics
Matches: 265, Mismatches: 63, Indels: 10
0.78 0.19 0.03
Matches are distributed among these distances:
26 19 0.07
27 218 0.82
28 15 0.06
29 13 0.05
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTATAAAC
Found at i:74713372 original size:54 final size:54
Alignment explanation
Indices: 74713240--74713559 Score: 288
Period size: 54 Copynumber: 5.9 Consensus size: 54
74713230 GGGTGTTTCA
* * * * * *
74713240 GTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTCAAGGGTATTTTT
1 GTAATTTTATAAACCAAGGGTATTT-TGGTAA-TTTTACAAA-TCGAGGGTATTTTG
* * * * *
74713296 GTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCG
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
* * *
74713350 GTAATTTCATAAACCAATGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTG
* ** ** * *
74713404 GTAATTTTACAAACTGAGGGTATTTCAGTAATTTTACAAA-CCAGGGGTATTTTA
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGA-GGGTATTTTG
* * * ***
74713458 GCAATTTTACAAA-CTAGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTG
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
* * **
74713511 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTA
74713560 AAACAGTAAT
Statistics
Matches: 216, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
53 39 0.18
54 143 0.66
55 9 0.04
56 25 0.12
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (54 bp):
GTAATTTTATAAACCAAGGGTATTTTGGTAATTTTACAAATCGAGGGTATTTTG
Found at i:74713397 original size:81 final size:81
Alignment explanation
Indices: 74713283--74713545 Score: 350
Period size: 81 Copynumber: 3.3 Consensus size: 81
74713273 TTTAGAAAGT
* **
74713283 CAAGGGTATTTTTGTAATTTTGTAAA-TCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
1 CAAGGGTATTTTAGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAATTGAGGGTATT
*
74713347 TCGGTAATTTCATAAAC
65 TCGGTAATTTTATAAAC
* * *
74713364 CAATGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
* *
74713429 CAGTAATTTTACAAAC
66 CGGTAATTTTATAAAC
* * *** *
74713445 CAGGGGTATTTTAGCAATTTTACAAACTA-GGGTATTTTGGTAATTTTATTGATCGAGGGTATTT
1 CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
* *
74713509 TGGTAATTTTGTAAAC
66 CGGTAATTTTATAAAC
74713525 CAAGGGTATTTTAGTAATTTT
1 CAAGGGTATTTTAGTAATTTT
74713546 GTAAATCGAG
Statistics
Matches: 158, Mismatches: 23, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
80 61 0.39
81 96 0.61
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.42
Consensus pattern (81 bp):
CAAGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTT
CGGTAATTTTATAAAC
Found at i:74713567 original size:27 final size:27
Alignment explanation
Indices: 74713537--74713667 Score: 190
Period size: 27 Copynumber: 4.9 Consensus size: 27
74713527 AGGGTATTTT
*
74713537 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
74713564 AGTAATTCTGTAAATCAAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
74713591 AGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
74713618 GGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
74713645 TGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTGTAAATCGAGGGTA
74713668 CTTTAGTAAT
Statistics
Matches: 92, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.30
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:74713612 original size:81 final size:81
Alignment explanation
Indices: 74713527--74713712 Score: 219
Period size: 81 Copynumber: 2.3 Consensus size: 81
74713517 TTGTAAACCA
* *
74713527 AGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAATA
1 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
*
74713592 GTAATTCTATAAATCG
66 GTAATTCTACAAATCG
*** * * * ***
74713608 AGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAACTGTAATTCTATAAATCGAGGGTACTTTA
1 AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
* * *
74713673 GTAATTTTACAATTTG
66 GTAATTCTACAAATCG
* *
74713689 AGGGCATTTCAGTAATTTGGTAAA
1 AGGGTATTTCAGTAATTTTGTAAA
74713713 CTAAAGTATT
Statistics
Matches: 84, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 84 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTAAAATA
GTAATTCTACAAATCG
Found at i:74713676 original size:27 final size:27
Alignment explanation
Indices: 74713496--74713680 Score: 156
Period size: 27 Copynumber: 6.9 Consensus size: 27
74713486 AATTTTATTG
** *
74713496 ATCGAGGGTATTTTGGTAATTTTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
* * **
74713523 ACCAAGGGTATTTTAGTAATTTTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
** *
74713550 ATCGAGGGTAAAACAGTAATTCTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
* * * *
74713577 ATCAAGGGTAAAATAGTAATTCTATAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
***
74713604 ATCGAGGGTAAAACGGTAATTTTGTAA
1 ATCGAGGGTAAATTAGTAATTTTGTAA
* * *
74713631 ATCGAGGGTAAAACT-GTAATTCTATAA
1 ATCGAGGGT-AAATTAGTAATTTTGTAA
**
74713658 ATCGAGGGTACTTTAGTAATTTT
1 ATCGAGGGTAAATTAGTAATTTT
74713681 ACAATTTGAG
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 2 0.02
27 125 0.96
28 3 0.02
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
ATCGAGGGTAAATTAGTAATTTTGTAA
Found at i:74713680 original size:54 final size:54
Alignment explanation
Indices: 74713511--74713667 Score: 217
Period size: 54 Copynumber: 2.9 Consensus size: 54
74713501 GGGTATTTTG
* *** * *
74713511 GTAATTTTGTAAACCAAGGGTATTTTAGTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
* *
74713565 GTAATTCTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
*
74713619 GTAATTTTGTAAATCGAGGGTAAAACT-GTAATTCTATAAATCGAGGGTA
1 GTAATTTTGTAAATCAAGGGTAAAA-TAGTAATTCTATAAATCGAGGGTA
74713668 CTTTAGTAAT
Statistics
Matches: 92, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 91 0.99
55 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.21, T:0.32
Consensus pattern (54 bp):
GTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACA
Found at i:74713799 original size:27 final size:27
Alignment explanation
Indices: 74713765--74713824 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
74713755 AGCCTATTCT
74713765 TGGCCCAAATGGGCCCACACGCTCGTG
1 TGGCCCAAATGGGCCCACACGCTCGTG
74713792 TGGCCCAAATGGGCCCACACGCTCGTG
1 TGGCCCAAATGGGCCCACACGCTCGTG
74713819 TGGCCC
1 TGGCCC
74713825 TTTTAGCCCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.17, C:0.38, G:0.30, T:0.15
Consensus pattern (27 bp):
TGGCCCAAATGGGCCCACACGCTCGTG
Found at i:74721889 original size:46 final size:46
Alignment explanation
Indices: 74721839--74721964 Score: 218
Period size: 46 Copynumber: 2.7 Consensus size: 46
74721829 TGGTTGAGCA
*
74721839 TCCGAACTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
74721885 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
74721931 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
74721965 GGGGCGGGTT
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 4 0.05
46 73 0.95
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:74722226 original size:19 final size:20
Alignment explanation
Indices: 74722189--74722226 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
74722179 ATAAGGTGGT
74722189 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
74722209 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
74722227 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:74723750 original size:30 final size:29
Alignment explanation
Indices: 74723696--74723759 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 29
74723686 CAAGTAGCCG
*
74723696 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAAACGCACACTTAGTGCCA
* *
74723725 AAGCTAGTTTAAAACGCATAGTTAGTGCCA
1 AAGCTAG-TTAAAACGCACACTTAGTGCCA
74723755 AAGCT
1 AAGCT
74723760 TCTGATTCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAAACGCACACTTAGTGCCA
Found at i:74729228 original size:53 final size:52
Alignment explanation
Indices: 74729046--74729298 Score: 210
Period size: 55 Copynumber: 4.8 Consensus size: 52
74729036 TTAGGGTTAG
* * *
74729046 GGATACCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGGAA
1 GGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAA-GGAA
* * *
74729101 GGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGAA
** * * *
74729155 AAAGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAA
1 GGA-TACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGG-AA
* * * *
74729209 GGATACCATGTAAGTCCATGTCGAGACATGGCAATGGTAAGTT--TCAA--AA
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGAA
* * * * *
74729258 GGAGACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
74729299 GTACCCATGT
Statistics
Matches: 163, Mismatches: 29, Indels: 18
0.78 0.14 0.09
Matches are distributed among these distances:
49 37 0.23
51 1 0.01
52 4 0.02
53 41 0.25
54 16 0.10
55 64 0.39
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (52 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGAA
Found at i:74729250 original size:108 final size:110
Alignment explanation
Indices: 74729051--74729251 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
74729041 GTTAGGGATA
* *
74729051 CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTCTAAGGGAAGGATATCATGTAAGA
1 CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
74729116 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAAGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAAGTC
* * *
74729161 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* * *
74729223 TCCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
74729252 TCAAAAGGAG
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATCCCAAGGCATGACAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGAAAAAGTC
Found at i:74729512 original size:16 final size:16
Alignment explanation
Indices: 74729491--74729521 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74729481 ATAAATTTGA
74729491 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
74729507 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
74729522 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:74733797 original size:45 final size:45
Alignment explanation
Indices: 74733679--74733817 Score: 203
Period size: 44 Copynumber: 3.1 Consensus size: 45
74733669 ACGGTACTAA
*
74733679 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAATGATAT
1 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
* * *
74733724 T-GGACCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGAT-ACTGT
1 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGA-TAT
*
74733768 TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATA-
1 TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
74733812 TCGGGC
1 TCGGGC
74733818 TGTAAAATGC
Statistics
Matches: 83, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
43 1 0.01
44 44 0.53
45 37 0.45
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (45 bp):
TCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAATGATAT
Found at i:74734084 original size:10 final size:10
Alignment explanation
Indices: 74734069--74734099 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
74734059 TCGGTCAAGG
74734069 TGTGAAAGTA
1 TGTGAAAGTA
74734079 TGTGAAAGTA
1 TGTGAAAGTA
74734089 TGTGAAAGTA
1 TGTGAAAGTA
74734099 T
1 T
74734100 TTGATTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.00, G:0.29, T:0.32
Consensus pattern (10 bp):
TGTGAAAGTA
Found at i:74736332 original size:54 final size:54
Alignment explanation
Indices: 74736273--74736431 Score: 192
Period size: 54 Copynumber: 2.9 Consensus size: 54
74736263 ATTATTAAAG
* *
74736273 TACCCTCGATTTACAGAGTTACCGTTTTACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
* * **
74736327 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
* * * *** * *
74736381 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCA
74736432 AAATACCATC
Statistics
Matches: 91, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 91 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTT
Found at i:74736403 original size:27 final size:27
Alignment explanation
Indices: 74736273--74736404 Score: 174
Period size: 27 Copynumber: 4.9 Consensus size: 27
74736263 ATTATTAAAG
* **
74736273 TACCCTCGATTTACAGAGTTACCGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
74736300 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
74736327 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
74736354 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
74736381 TACCCTCGATTTATAAAATTACTA
1 TACCCTCGATTTACAGAATTACTA
74736405 AAATACCCTT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:74736411 original size:27 final size:27
Alignment explanation
Indices: 74736327--74736677 Score: 136
Period size: 27 Copynumber: 13.2 Consensus size: 27
74736317 ATTACCATTT
* ***
74736327 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * * ****
74736354 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTAAAA
74736381 TACCCTCGATTTATAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * * *
74736408 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
*
74736435 TACCATCGA-TTAGTAAAA-TAC-----
1 TACCCTCGATTTA-TAAAATTACTAAAA
* * *
74736456 --CCCT-GGTTTGTAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
74736480 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
74736507 TATCCCTAG-TTTGTAAAATTACCAAAAA
1 TA-CCCTCGATTTATAAAATTA-CTAAAA
* * * **
74736535 TACCACT-GGTTTGTGAAATTACCGAAA
1 TACC-CTCGATTTATAAAATTACTAAAA
* * *
74736562 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* * *
74736589 TACCC-CTGATTTACAAAGTTACAAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
74736616 TACCCTTGACTTTCTAAAAATTA-TGGAAA
1 TACCCTCGA-TTTAT-AAAATTACT-AAAA
* * * * *
74736645 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGATTTATAAAATTACTAAAA
74736672 TACCCT
1 TACCCT
74736678 TGGTTTGTAG
Statistics
Matches: 251, Mismatches: 51, Indels: 44
0.73 0.15 0.13
Matches are distributed among these distances:
18 6 0.02
19 8 0.03
26 13 0.05
27 177 0.71
28 31 0.12
29 16 0.06
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:74736428 original size:81 final size:81
Alignment explanation
Indices: 74736273--74736429 Score: 188
Period size: 81 Copynumber: 1.9 Consensus size: 81
74736263 ATTATTAAAG
* * * ***
74736273 TACCCTCGATTTACAGAGTTACCGTTTTACCCTTGATTTACAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
* *
74736338 TATAGAATTACTATTT
66 TACAAAATTACTATTT
* * * * * *
74736354 TACCCTTGATTTACAGAATTACTGTTTTACCCTCGATTTATAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
74736419 TACAAAATTAC
66 TACAAAATTAC
74736430 CAAAATACCA
Statistics
Matches: 62, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.39
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTACAAAATTACCAAAATACCCTCGATT
TACAAAATTACTATTT
Found at i:74736454 original size:45 final size:45
Alignment explanation
Indices: 74736397--74736498 Score: 123
Period size: 45 Copynumber: 2.3 Consensus size: 45
74736387 CGATTTATAA
* *
74736397 AATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCATC
1 AATTAGTAAAATACCCCTGGTTTACAAAATTACCAAAATACCATC
* ** ** *
74736442 GATTAGTAAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTC
1 AATTAGTAAAATACCCCTGGTTTACAAAATTACCAAAATACCATC
*
74736487 AATTTGTAAAAT
1 AATTAGTAAAAT
74736499 TACCAAAATA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (45 bp):
AATTAGTAAAATACCCCTGGTTTACAAAATTACCAAAATACCATC
Found at i:74736557 original size:55 final size:53
Alignment explanation
Indices: 74736449--74736593 Score: 166
Period size: 55 Copynumber: 2.7 Consensus size: 53
74736439 ATCGATTAGT
* **
74736449 AAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACC
1 AAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACC
** *
74736503 AAAATATCCCTAGTTTGTAAAATTACCAAAAATACCACT-GGTTTGTGAAATTACC
1 AAAATA-CCCTAGTTTGTAAAATTACC-AAAATACC-CTCAATTTGTAAAATTACC
* *
74736558 GAAATACCCTCAATTTGTAAAATTACCAAAATACCC
1 AAAATACCCT-AGTTTGTAAAATTACCAAAATACCC
74736594 CTGATTTACA
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
53 1 0.01
54 36 0.46
55 40 0.51
56 2 0.03
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAAATACCCTAGTTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTACC
Found at i:74736586 original size:82 final size:81
Alignment explanation
Indices: 74736449--74736619 Score: 256
Period size: 82 Copynumber: 2.1 Consensus size: 81
74736439 ATCGATTAGT
* * *
74736449 AAAATACCCCTGGTTTGTAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATATCCCT
1 AAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
*
74736514 AGTTTGTA-AAA-TTACCA
66 -GATT-TACAAAGTTA-CA
*
74736531 AAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 AAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
74736596 GATTTACAAAGTTACA
66 GATTTACAAAGTTACA
74736612 AAAATACC
1 AAAATACC
74736620 CTTGACTTTC
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
80 2 0.02
81 16 0.20
82 64 0.78
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (81 bp):
AAAATACCACTGGTTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
GATTTACAAAGTTACA
Found at i:74736797 original size:27 final size:27
Alignment explanation
Indices: 74736737--74736802 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
74736727 ACCCCTATTA
* *
74736737 GGTAAAAAGACCGTAAAGCCCCTGTAG
1 GGTAAAGAGACCGTAAAGCCCCCGTAG
74736764 GGTAAAGAGACCGTAAAGCCCCCGTAG
1 GGTAAAGAGACCGTAAAGCCCCCGTAG
*
74736791 GGTAAAGTGACC
1 GGTAAAGAGACC
74736803 ATAATACCCC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.35, C:0.23, G:0.29, T:0.14
Consensus pattern (27 bp):
GGTAAAGAGACCGTAAAGCCCCCGTAG
Found at i:74737707 original size:52 final size:51
Alignment explanation
Indices: 74737629--74737751 Score: 212
Period size: 52 Copynumber: 2.4 Consensus size: 51
74737619 AGGAAGTGCA
*
74737629 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTACGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-CGCCCCAGTTTACCG
*
74737681 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTCGCCCCAGTTTACCG
74737732 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
74737752 ATTAAAGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
50 10 0.14
51 23 0.33
52 36 0.52
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTCGCCCCAGTTTACCG
Found at i:74737726 original size:25 final size:26
Alignment explanation
Indices: 74737629--74737751 Score: 178
Period size: 26 Copynumber: 4.8 Consensus size: 26
74737619 AGGAAGTGCA
**
74737629 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
74737655 AAAAGGGCTTACGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
74737681 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
74737707 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
74737732 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
74737752 ATTAAAGAGG
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 33 0.38
26 54 0.62
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:74737961 original size:42 final size:42
Alignment explanation
Indices: 74737896--74737987 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
74737886 TAGTCTCCCC
* ** * *
74737896 AAATAGGCTTGCATACATTCATTGGTATTTCATTTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
74737938 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
74737980 AAATAGGC
1 AAATAGGC
74737988 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:74744516 original size:44 final size:44
Alignment explanation
Indices: 74744448--74744615 Score: 214
Period size: 44 Copynumber: 3.8 Consensus size: 44
74744438 TACGGTACTA
* * *
74744448 ATCGAGCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAATGAT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
* * **
74744492 ATCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATTCT
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
*
74744536 ATTCGGGCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAAATGAT
1 A-TCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
** *
74744581 ATTTGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
74744616 GATGAATTTG
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
42 10 0.09
43 17 0.16
44 43 0.39
45 39 0.36
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (44 bp):
ATCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGAT
Found at i:74744557 original size:45 final size:45
Alignment explanation
Indices: 74744453--74744615 Score: 217
Period size: 45 Copynumber: 3.7 Consensus size: 45
74744443 TACTAATCGA
* *
74744453 GCCTTTGAGCTTAGCAGGCTATAATGCCGGTGAAATGATA-TCGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
* * **
74744497 GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATTCTATTCGG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
* *
74744542 GCCTTCGAGCCTAGCAAGCTATAATGCCGGTGAAATGATATT-TG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
*
74744586 G-CTTCGAGCCTAGCAGGCGA-AATGCCGGTG
1 GCCTTCGAGCCTAGCAGGCTATAATGCCGGTG
74744616 GATGAATTTG
Statistics
Matches: 106, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
42 10 0.09
43 17 0.16
44 38 0.36
45 41 0.39
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.26
Consensus pattern (45 bp):
GCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAATGATATTCGG
Found at i:74746819 original size:15 final size:16
Alignment explanation
Indices: 74746787--74746819 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
74746777 GGCCCAGTCC
74746787 GTTACTGTATGCATTG
1 GTTACTGTATGCATTG
*
74746803 GTTACTGTTTG-ATTG
1 GTTACTGTATGCATTG
74746818 GT
1 GT
74746820 AGGGGATTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.15, C:0.09, G:0.27, T:0.48
Consensus pattern (16 bp):
GTTACTGTATGCATTG
Found at i:74748712 original size:27 final size:27
Alignment explanation
Indices: 74748682--74748878 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
74748672 TACTGAAATG
** *
74748682 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * * *
74748709 CCCTCGATTTATAGAATTACCGTTTCA
1 CCCTCGATTTACAAAATTACCATTTTA
*
74748736 CCCTCGATTTACAAAATTGCCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* * *
74748763 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
74748790 CCCT-GATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
74748816 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTACAAAATTACCATTTTA
* *
74748843 CCCTC-AGTTTAAAAAATTACCGTTTTA
1 CCCTCGA-TTTACAAAATTACCATTTTA
*
74748870 CCCTTGATT
1 CCCTCGATT
74748879 GTGAAATTAC
Statistics
Matches: 149, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
26 24 0.16
27 124 0.83
28 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
CCCTCGATTTACAAAATTACCATTTTA
Found at i:74748831 original size:80 final size:80
Alignment explanation
Indices: 74748682--74748878 Score: 277
Period size: 80 Copynumber: 2.4 Consensus size: 80
74748672 TACTGAAATG
* * * * *
74748682 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTCACCCTCGATTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCT-GATTTACAAAATTACCATTTCACCCTCGATTTA
*
74748747 CAAAATTGCCATTTTA
65 CAAAATTACCATTTTA
*
74748763 CCCTCAATTTATAGAATTACCATTTTACCCTGATTTACAAAATTACCATTTTACCCTCGATTTAC
1 CCCTCAATTTATAGAATTACCATTTTACCCTGATTTACAAAATTACCATTTCACCCTCGATTTAC
74748828 AAAATTACCATTTTA
66 AAAATTACCATTTTA
* * * *
74748843 CCCTCAGTTTAAAAAATTACCGTTTTACCCTTGATT
1 CCCTCAATTTATAGAATTACCATTTTACCC-TGATT
74748879 GTGAAATTAC
Statistics
Matches: 104, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
80 70 0.67
81 34 0.33
ACGTcount: A:0.30, C:0.24, G:0.07, T:0.39
Consensus pattern (80 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTGATTTACAAAATTACCATTTCACCCTCGATTTAC
AAAATTACCATTTTA
Found at i:74748962 original size:27 final size:27
Alignment explanation
Indices: 74748910--74749031 Score: 149
Period size: 27 Copynumber: 4.6 Consensus size: 27
74748900 TGTAGGATAG
*
74748910 AATTACCAAAAT-CACCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
74748936 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* ** * *
74748963 AATGACCAAAATACCAATGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
74748990 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
74749017 AATTACCAAAATACC
1 AATTACCAAAATACC
74749032 TCTGATTTAC
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
26 14 0.18
27 64 0.81
28 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:74749002 original size:54 final size:52
Alignment explanation
Indices: 74748877--74749032 Score: 172
Period size: 54 Copynumber: 2.9 Consensus size: 52
74748867 TTACCCTTGA
* ** *
74748877 TTGTGAAATTACTGAAATACCCCT-GTAGGATAGAATTACCAAAATCACCTAGT
1 TTGTGAAATTACCGAAATACCCCTAGTTTG-TAAAATTACCAAAAT-ACCTAGT
* * * *
74748930 TTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATGACCAAAATACCAATGGT
1 TTGTGAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACC--TAGT
*
74748984 TTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACCAAAATACCT
1 TTGTGAAATTACCGAAATACCCCT-AGTTTGTAAAATTACCAAAATACCT
74749033 CTGATTTACA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
52 4 0.05
53 38 0.44
54 45 0.52
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.29
Consensus pattern (52 bp):
TTGTGAAATTACCGAAATACCCCTAGTTTGTAAAATTACCAAAATACCTAGT
Found at i:74749039 original size:27 final size:27
Alignment explanation
Indices: 74748910--74749048 Score: 124
Period size: 27 Copynumber: 5.2 Consensus size: 27
74748900 TGTAGGATAG
*
74748910 AATTACCAAAATCACCT-AG-TTTGTAA
1 AATTACCAAAAT-ACCTCTGATTTGTAA
*
74748936 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCTCTGA-TTTGTAA
* ** * *
74748963 AATGACCAAAATACCAATGGTTTGTGA
1 AATTACCAAAATACCTCTGATTTGTAA
* *
74748990 AATTACCGAAATACC-CTCAATTTGTAA
1 AATTACCAAAATACCTCT-GATTTGTAA
**
74749017 AATTACCAAAATACCTCTGATTTACAA
1 AATTACCAAAATACCTCTGATTTGTAA
74749044 AATTA
1 AATTA
74749049 TAGAAATACC
Statistics
Matches: 90, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
25 3 0.03
26 13 0.14
27 72 0.80
28 2 0.02
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCTCTGATTTGTAA
Found at i:74749047 original size:54 final size:53
Alignment explanation
Indices: 74748910--74749116 Score: 159
Period size: 54 Copynumber: 3.8 Consensus size: 53
74748900 TGTAGGATAG
* ** * *
74748910 AATTACCAAAATCACC-TAGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAA
1 AATTACCAAAAT-ACCTTGGTTTACAAAATTACCGAAATACCCTC-AATTTGTAA
* * ***
74748963 AATGACCAAAATACCAATGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACC-TTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
* ** * * *
74749017 AATTACCAAAATACCTCTGATTTACAAAATTATAGAAATACCCTTGACTTTCTAAA
1 AATTACCAAAATACCT-TGGTTTACAAAATTACCGAAATACCC-TCAATTTGT-AA
* *
74749073 AATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCT
1 AATTACCA-AAATACC-TTGGTTTACAAAATTACCGAAATACCCT
74749117 TGGTTTGTAG
Statistics
Matches: 126, Mismatches: 20, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
52 3 0.02
53 11 0.09
54 65 0.52
55 9 0.07
56 37 0.29
57 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (53 bp):
AATTACCAAAATACCTTGGTTTACAAAATTACCGAAATACCCTCAATTTGTAA
Found at i:74749055 original size:27 final size:27
Alignment explanation
Indices: 74749025--74749114 Score: 89
Period size: 27 Copynumber: 3.3 Consensus size: 27
74749015 AAAATTACCA
74749025 AAATACCTCTGATTTACAAAATTATAG
1 AAATACCTCTGATTTACAAAATTATAG
74749052 AAATACC-CTTGACTTT-CTAAAAATTATAG
1 AAATACCTC-TGA-TTTAC--AAAATTATAG
*
74749081 AAATACCAT-TGGTTTACAAAATTACT-G
1 AAATACC-TCTGATTTACAAAATTA-TAG
74749108 AAATACC
1 AAATACC
74749115 CTTGGTTTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
26 1 0.02
27 26 0.48
28 7 0.13
29 20 0.37
ACGTcount: A:0.43, C:0.17, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATACCTCTGATTTACAAAATTATAG
Found at i:74749119 original size:27 final size:27
Alignment explanation
Indices: 74749037--74749122 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
74749027 ATACCTCTGA
*
74749037 TTTACAAAATTATAGAAATACCCTTGAC
1 TTTACAAAATTATAGAAATACCCTTG-G
*
74749065 TTT-CTAAAAATTATAGAAATACCATTGG
1 TTTAC--AAAATTATAGAAATACCCTTGG
74749093 TTTACAAAATTACT-GAAATACCCTTGG
1 TTTACAAAATTA-TAGAAATACCCTTGG
74749120 TTT
1 TTT
74749123 GTAGATTTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
27 23 0.45
28 7 0.14
29 21 0.41
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (27 bp):
TTTACAAAATTATAGAAATACCCTTGG
Found at i:74749267 original size:27 final size:27
Alignment explanation
Indices: 74749176--74749267 Score: 116
Period size: 27 Copynumber: 3.4 Consensus size: 27
74749166 ACCCCTATTA
* *
74749176 GGTAAAAAGACCGTAAAGCTCCTGTAG
1 GGTAAAATGACCGTAAAGCCCCTGTAG
74749203 GGTAAAGA-GACCGTAAAGCCCCTGTAG
1 GGTAAA-ATGACCGTAAAGCCCCTGTAG
* *
74749230 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTGTAG
74749257 GGTAAAATGAC
1 GGTAAAATGAC
74749268 GAATATGCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 56 0.97
28 2 0.03
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTGTAG
Found at i:74750098 original size:26 final size:26
Alignment explanation
Indices: 74750066--74750176 Score: 168
Period size: 26 Copynumber: 4.3 Consensus size: 26
74750056 TAGGAAGTGC
**
74750066 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
74750092 AACAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
74750118 AAAAGGGCTTATGACCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
74750144 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
74750170 AAAAGGG
1 AAAAGGG
74750177 AATAATTGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:74750151 original size:52 final size:52
Alignment explanation
Indices: 74750066--74750281 Score: 269
Period size: 52 Copynumber: 4.4 Consensus size: 52
74750056 TAGGAAGTGC
*
74750066 AAAAGGGCTTATGCCCCAGTTTATTGAACAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* ** **
74750118 AAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
* *
74750170 AAAAGGG---A------A--TAATTGAAAAGGGCTTATGCCCCCGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
74750211 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
74750262 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
74750282 ATTAAAGAGG
Statistics
Matches: 139, Mismatches: 14, Indels: 24
0.79 0.08 0.14
Matches are distributed among these distances:
41 33 0.24
43 1 0.01
44 1 0.01
49 1 0.01
50 11 0.08
51 24 0.17
52 68 0.49
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:74750225 original size:67 final size:67
Alignment explanation
Indices: 74750117--74750243 Score: 236
Period size: 67 Copynumber: 1.9 Consensus size: 67
74750107 CCAGTTTACC
74750117 GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGAATAA
1 GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGAATAA
74750182 TT
66 TT
* *
74750184 GAAAAGGGCTTATGCCCCCGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGG
1 GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGG
74750244 CTTTGCCCCA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.24
Consensus pattern (67 bp):
GAAAAGGGCTTATGACCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGAATAA
TT
Found at i:74750250 original size:25 final size:26
Alignment explanation
Indices: 74750184--74750281 Score: 155
Period size: 26 Copynumber: 3.8 Consensus size: 26
74750174 GGGAATAATT
*
74750184 GAAAAGGGCTTATGCCCCCGTTTACC
1 GAAAAGGGCTTATGCCCCAGTTTACC
**
74750210 GAAAAGGGCTTATGCCCCAGTTTATT
1 GAAAAGGGCTTATGCCCCAGTTTACC
74750236 GAAAAGGGCTT-TGCCCCAGTTTACC
1 GAAAAGGGCTTATGCCCCAGTTTACC
74750261 GAAAAGGGCTT-TGCCCCAGTT
1 GAAAAGGGCTTATGCCCCAGTT
74750282 ATTAAAGAGG
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
25 33 0.49
26 34 0.51
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (26 bp):
GAAAAGGGCTTATGCCCCAGTTTACC
Found at i:74750261 original size:51 final size:51
Alignment explanation
Indices: 74750181--74750281 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
74750171 AAAGGGAATA
*
74750181 ATTGAAAAGGGCTTATGCCCCCGTTTACCGAAAAGGGCTTATGCCCCAGTTT
1 ATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTTT
74750233 ATTGAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTT
1 ATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTT
74750282 ATTAAAGAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 10 0.21
51 24 0.50
52 14 0.29
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.27
Consensus pattern (51 bp):
ATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTT
Found at i:74750550 original size:31 final size:31
Alignment explanation
Indices: 74750499--74750577 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
74750489 CGTTTACAGT
* *
74750499 AAAGGCTTCGACCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74750530 AAAGGATTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
74750561 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
74750578 AACCGTTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:74755699 original size:30 final size:30
Alignment explanation
Indices: 74755665--74755722 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
74755655 CCGAGCCTAG
74755665 GGGCAAAAGTCTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTCTAAATATGCAAAAGTTTAA
* * * *
74755695 GGGCAAAATTGTAATTTTGCAAAAGTTT
1 GGGCAAAAGTCTAAATATGCAAAAGTTT
74755723 GAGTTAAGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.21, T:0.29
Consensus pattern (30 bp):
GGGCAAAAGTCTAAATATGCAAAAGTTTAA
Found at i:74761628 original size:108 final size:110
Alignment explanation
Indices: 74761476--74761676 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
74761466 ATCCTTTTGA
* * *
74761476 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA-CTCACTAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTA-GAAACCTCACCAA
74761539 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * *
74761584 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
*
74761649 TTCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
74761677 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 49 0.59
109 6 0.07
110 27 0.33
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:74761631 original size:55 final size:53
Alignment explanation
Indices: 74761476--74761683 Score: 215
Period size: 55 Copynumber: 3.8 Consensus size: 53
74761466 ATCCTTTTGA
* *
74761476 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCCTTGCCTTATAG
* * * *
74761529 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACAT-GTATCC-TTGCCTTATAG
* * * *
74761583 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGA-
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATG-TATCCTTGCCTTATAG
* *
74761637 AACCTTACCAATTTCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 AA-CTTACCAA-TGCCATGCCTTGACATGGTCTTACAT-GTATCCTT
74761684 AAACCCTAAT
Statistics
Matches: 128, Mismatches: 19, Indels: 14
0.80 0.12 0.09
Matches are distributed among these distances:
52 2 0.02
53 45 0.35
54 9 0.07
55 69 0.54
56 3 0.02
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGTATCCTTGCCTTATAG
Found at i:74768630 original size:23 final size:24
Alignment explanation
Indices: 74768590--74768634 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
74768580 TTTGCTCTTC
* *
74768590 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGCCTTACCTTTT
74768614 TAGCAT-AACTCGCCTTACCTT
1 TAGCATGAACTCGCCTTACCTT
74768635 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.27, G:0.11, T:0.40
Consensus pattern (24 bp):
TAGCATGAACTCGCCTTACCTTTT
Found at i:74768832 original size:53 final size:54
Alignment explanation
Indices: 74768703--74768957 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
74768693 ACACGGGTAC
* * * * *
74768703 CTTACCATTTCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
74768752 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
74768805 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * * * *
74768860 CTTATCAATGCCATGTCTTGACTTGGTCTTACATGATTTCCTTGCCTTA-AAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
74768913 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
74768958 AAACCCTAAT
Statistics
Matches: 170, Mismatches: 25, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 48 0.28
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:74768902 original size:108 final size:110
Alignment explanation
Indices: 74768750--74768950 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 110
74768740 ATCCTTTTGA
* * **
74768750 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAA-CTCACCAA-
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACCTCACCAAT
74768813 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
66 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* * * *
74768858 AACTTATCAATGCCATGTCTTGACTTGGTCTTACATGATTTCCTTGCCTTAAAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACCTCACCAAT
74768923 TGCCATGCCTTGGCATGGTCTTACATGG
66 TGCCATGCCTTGGCATGGTCTTACATGG
74768951 TATCCTTAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 48 0.58
109 7 0.08
110 28 0.34
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATATCCTTGCCTTAAAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:74770247 original size:11 final size:11
Alignment explanation
Indices: 74770231--74770258 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
74770221 GCTGAAGCCC
74770231 ATATCACAATA
1 ATATCACAATA
74770242 ATATCACAATA
1 ATATCACAATA
74770253 ATATCA
1 ATATCA
74770259 TACATGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.18, G:0.00, T:0.29
Consensus pattern (11 bp):
ATATCACAATA
Found at i:74770762 original size:27 final size:27
Alignment explanation
Indices: 74770732--74770806 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 27
74770722 TACCTTATAG
* **
74770732 GGGTATGTGAGTCGTTTTACACTACAA
1 GGGTATGTCAGTAATTTTACACTACAA
*
74770759 GGGTATTTCAGTAATTTTACACTACAA
1 GGGTATGTCAGTAATTTTACACTACAA
* *
74770786 GGGTATTTCAATAATTTTACA
1 GGGTATGTCAGTAATTTTACA
74770807 AATCAGAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (27 bp):
GGGTATGTCAGTAATTTTACACTACAA
Found at i:74770821 original size:27 final size:27
Alignment explanation
Indices: 74770758--74771126 Score: 399
Period size: 27 Copynumber: 13.7 Consensus size: 27
74770748 TTACACTACA
* *
74770758 AGGGTATTTCAGTAATTTTAC-ACTACA
1 AGGGTATTTCAGTAATTTTACAAAT-CG
*
74770785 AGGGTATTTCAATAATTTTACAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
74770811 AGAGGTGTTTCGGTAATTTTACAAATCG
1 AG-GGTATTTCAGTAATTTTACAAATCG
* *
74770839 AGGGTATTTCGGTAATTTTACAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
74770866 AGGGTATTTC-GATAATTTTACAAATTG
1 AGGGTATTTCAG-TAATTTTACAAATCG
74770893 AGGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
74770920 AGAGTGTTTCAGTAATTTTAAAAATTG
1 AGGGTATTTCAGTAATTTTACAAATCG
* ** *
74770947 AGGGTGTTTTGGTAATTTTACAAATCA
1 AGGGTATTTCAGTAATTTTACAAATCG
* * * *
74770974 AGGGTGTTTCAATAATTTCATAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
* **
74771001 GGGGTATTTTGGTAATTTTACAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
74771028 AGGGTATTTTAGT-ATTTT-CACAATCG
1 AGGGTATTTCAGTAATTTTACA-AATCG
*
74771054 AGGGTATTTCAGTAATTTTATAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
74771080 AGGGGTATTTCGGTAATTTTACAAATCA
1 A-GGGTATTTCAGTAATTTTACAAATCG
*
74771108 AGGGTATTTTAGTAATTTT
1 AGGGTATTTCAGTAATTTT
74771127 TCTTTATTAT
Statistics
Matches: 293, Mismatches: 39, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.01
26 26 0.09
27 258 0.88
28 7 0.02
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:74774649 original size:16 final size:16
Alignment explanation
Indices: 74774628--74774658 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
74774618 AAAATGATAT
*
74774628 ATGTTTTCATAACATC
1 ATGTTTTCACAACATC
74774644 ATGTTTTCACAACAT
1 ATGTTTTCACAACAT
74774659 TGTTGAAATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.19, G:0.06, T:0.42
Consensus pattern (16 bp):
ATGTTTTCACAACATC
Found at i:74783220 original size:29 final size:29
Alignment explanation
Indices: 74783149--74783272 Score: 124
Period size: 29 Copynumber: 4.3 Consensus size: 29
74783139 AAATTCACAT
* * * *
74783149 ACATGTATATGGCCCACTAGACCC-AATT
1 ACATTTATATGGCCCATTAGGCCCAAATC
* * * *
74783177 ATATTCACATGGCCCATTAGGCCAAAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
*
74783206 ACATTTATATGGCCCTTTAGGCCCAAATC
1 ACATTTATATGGCCCATTAGGCCCAAATC
* * *
74783235 ACATTTATATGGCACATCAGGCCCAATTC
1 ACATTTATATGGCCCATTAGGCCCAAATC
*
74783264 AAATTTATA
1 ACATTTATA
74783273 GTCATGCTCA
Statistics
Matches: 77, Mismatches: 18, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
28 17 0.22
29 60 0.78
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (29 bp):
ACATTTATATGGCCCATTAGGCCCAAATC
Found at i:74783509 original size:16 final size:16
Alignment explanation
Indices: 74783488--74783526 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
74783478 TCAAACTTTC
*
74783488 AGCTTTTCGATATTTT
1 AGCTTTTCGACATTTT
74783504 AGCTTTTCGACATTTT
1 AGCTTTTCGACATTTT
*
74783520 GGCTTTT
1 AGCTTTT
74783527 ATCGATCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.54
Consensus pattern (16 bp):
AGCTTTTCGACATTTT
Found at i:74787060 original size:27 final size:26
Alignment explanation
Indices: 74787012--74787071 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
74787002 GCGAGGCTGC
*
74787012 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
74787039 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
74787065 CAGATAT
1 CAGATAT
74787072 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74787158 original size:27 final size:26
Alignment explanation
Indices: 74787110--74787161 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74787100 GTGAGGCTGC
*
74787110 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
74787136 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
74787162 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74787816 original size:27 final size:27
Alignment explanation
Indices: 74787786--74787877 Score: 112
Period size: 27 Copynumber: 3.4 Consensus size: 27
74787776 AGGGCAAAAT
* *
74787786 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* * *
74787813 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
74787840 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
**
74787867 AATAATTCTAC
1 GGTAATTCTAC
74787878 AACTTATCCA
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:74793389 original size:15 final size:15
Alignment explanation
Indices: 74793369--74793401 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
74793359 AATGAAACCC
74793369 ATAGGCCCATAGTAG
1 ATAGGCCCATAGTAG
74793384 ATAGGCCCATAGTAG
1 ATAGGCCCATAGTAG
74793399 ATA
1 ATA
74793402 TAGAACAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (15 bp):
ATAGGCCCATAGTAG
Found at i:74793586 original size:27 final size:26
Alignment explanation
Indices: 74793538--74793595 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 26
74793528 GTAAGGCTGC
*
74793538 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
74793565 CAGATATTGTGTCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
74793591 CAGAT
1 CAGAT
74793596 TTATATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74793686 original size:27 final size:26
Alignment explanation
Indices: 74793638--74793689 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
74793628 GCGAGGGTGC
*
74793638 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
74793664 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
74793690 GTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:74794345 original size:27 final size:27
Alignment explanation
Indices: 74794315--74794406 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
74794305 AGGGCAAAAT
* *
74794315 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATCTC
* *
74794342 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
*
74794369 GGTAATTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATCTC
**
74794396 AATAATTCTAC
1 GGTAATTCTAC
74794407 GACTTATCCA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATCTC
Found at i:74797240 original size:53 final size:53
Alignment explanation
Indices: 74797065--74797268 Score: 174
Period size: 53 Copynumber: 3.8 Consensus size: 53
74797055 AGGGTTTAAG
* * * * * * *
74797065 GATACCAAGTAAGACCATGCCAAGGCGTGGCATTGGTAAGTTTTACAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAAA
* * ** ** * * *
74797119 GAAATCATGTAAGACCATTTCAAGACATGGCTTTGATAAACTACGATAAGGCAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAA
* * * *
74797174 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGTTAAGTTCATAAGGCAAC
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
* * *
74797227 GATACCATGTAAGACCATGTCAATACATGGAAATGGTAAGTT
1 GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
74797269 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 32, Indels: 5
0.76 0.21 0.03
Matches are distributed among these distances:
53 45 0.39
54 33 0.28
55 38 0.33
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAA
Found at i:74807679 original size:19 final size:21
Alignment explanation
Indices: 74807646--74807689 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
74807636 AAGTGATTAA
74807646 AAAACTAAGTAAAAT-AAAAT
1 AAAACTAAGTAAAATAAAAAT
*
74807666 AAAA-TAAGTTAAATAAAAAT
1 AAAACTAAGTAAAATAAAAAT
74807686 AAAA
1 AAAA
74807690 GTTCCAATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (21 bp):
AAAACTAAGTAAAATAAAAAT
Found at i:74816039 original size:40 final size:40
Alignment explanation
Indices: 74815968--74816148 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
74815958 AAACCAAGTA
** * *
74815968 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
* *
74816007 CCTTCAGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
74816047 CCTTCGGGACTTACCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
74816087 CCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATG
74816126 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
74816149 CATCCGAATA
Statistics
Matches: 123, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
38 1 0.01
39 44 0.36
40 77 0.63
41 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:74816104 original size:79 final size:80
Alignment explanation
Indices: 74815994--74816148 Score: 215
Period size: 79 Copynumber: 1.9 Consensus size: 80
74815984 GGATATAGCT
* * * *
74815994 ACTCGCTCAAATGCCTTCAGGACTTAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAAT-TAGTAACTAGCACAAATGCCTTCGGGACT
74816058 TACCCCGGTTATAGTA
65 TACCCCGGTTATAGTA
* * *
74816074 ACTCGCACAATTGCCTTC-GGGCTTAGCCCGGAATTAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTT
*
74816138 AGCCCGGTTAT
66 ACCCCGGTTAT
74816149 CATCCGAATA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 49 0.74
80 17 0.26
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCAGGACTTAGCCCGGAATTAGTAACTAGCACAAATGCCTTCGGGACTT
ACCCCGGTTATAGTA
Found at i:74817919 original size:40 final size:40
Alignment explanation
Indices: 74817867--74818048 Score: 185
Period size: 40 Copynumber: 4.5 Consensus size: 40
74817857 TAACTCATAC
* * *
74817867 AATGCCTTCGGGACTTAACCCGGATTTTA-AAACTCGTACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAGAAACTCGCACA
* *
74817907 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
*
74817947 AAGGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAGA-AACTCGCACA
** * *
74817987 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTAACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAGAAAC-TCGCACA
*
74818028 AA-GCCTTCGGGACTTAGCCCG
1 AATGCCTTCGGGACTTAACCCG
74818049 AACAGCATTC
Statistics
Matches: 121, Mismatches: 14, Indels: 14
0.81 0.09 0.09
Matches are distributed among these distances:
39 8 0.07
40 102 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAGAAACTCGCACA
Found at i:74817981 original size:80 final size:80
Alignment explanation
Indices: 74817846--74818048 Score: 227
Period size: 80 Copynumber: 2.5 Consensus size: 80
74817836 CGGGACATAG
* * * * * * *
74817846 CCCGGTTATAGTAACTCA-TACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGTACGAAT
1 CCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAT
74817910 GCCTTCGGGA-CTTAA
66 GCCTTC-GGATCTTAA
* *
74817925 CCCGGA-ATTAGTATC-TCGCACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
1 CCCGGATA-TAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACA
*
74817987 AATGCCTTCGGATCTTAG
63 AATGCCTTCGGATCTTAA
* *
74818005 TCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCG
74818049 AACAGCATTC
Statistics
Matches: 103, Mismatches: 14, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
78 1 0.01
79 22 0.21
80 71 0.69
81 9 0.09
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
CCCGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAAT
GCCTTCGGATCTTAA
Found at i:74825845 original size:39 final size:41
Alignment explanation
Indices: 74825778--74825958 Score: 178
Period size: 40 Copynumber: 4.5 Consensus size: 41
74825768 CTCGTTCAAG
* * *
74825778 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAA
* * *
74825817 TGCCTTCGGGACTTAACCCGGAAT-TAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAA
* * * *
74825857 GGCCTTCGGGACTTAACCCGGAAT-TAATAACTCGCACAAA
1 TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAA
* * *
74825897 TGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA
1 TGCCTTCGGGA-CTTAGCCCGGAATATAGTAACTCA-CACAAA
74825938 -GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAGCCCGGA
74825959 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 34 0.29
40 75 0.64
41 9 0.08
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (41 bp):
TGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAA
Found at i:74829433 original size:27 final size:27
Alignment explanation
Indices: 74829403--74829524 Score: 169
Period size: 26 Copynumber: 4.6 Consensus size: 27
74829393 ATATTAAGTC
* *
74829403 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
74829430 CGCACACTTAGT-CTAC-TAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAA-CT
*
74829456 CGCACACTTAGTGCTACAT-ATCAAGT
1 CGCACACTTAGTGCTACATAATCAACT
*
74829482 CGTACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
74829510 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74829525 GTACAATTTA
Statistics
Matches: 84, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
25 7 0.08
26 36 0.43
27 23 0.27
28 18 0.21
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:74829515 original size:54 final size:53
Alignment explanation
Indices: 74829403--74829524 Score: 174
Period size: 54 Copynumber: 2.3 Consensus size: 53
74829393 ATATTAAGTC
* * *
74829403 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTCTACTAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTCTACTAATCAAACT
* *
74829456 CGCACACTTAGTGCTACAT-ATCAAGTCGTACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGT-CTAC-TAATCAAACT
74829510 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
74829525 GTACAATTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
52 17 0.27
53 21 0.34
54 24 0.39
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (53 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTCTACTAATCAAACT
Found at i:74846663 original size:40 final size:39
Alignment explanation
Indices: 74846575--74846799 Score: 242
Period size: 40 Copynumber: 5.6 Consensus size: 39
74846565 TTGAATGATG
* * *
74846575 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
74846615 TCCAGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
74846655 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
74846695 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
*
74846734 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTA-AA
*
74846775 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
74846800 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
39 35 0.21
40 115 0.71
41 12 0.07
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:74846731 original size:79 final size:80
Alignment explanation
Indices: 74846575--74846799 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
74846565 TTGAATGATG
* * * * * * *
74846575 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAA-TTACTATAACCGGGCTAAG-TCCCGAAGGCAT
74846638 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
*
74846655 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCCGAAGGCATTTGTGCGA-ATTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
74846716 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
74846734 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
74846799 G
66 G
74846800 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
78 2 0.02
79 68 0.54
80 45 0.36
81 9 0.07
82 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCCGAAGGCATTTGTGCGAATTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:74846791 original size:119 final size:120
Alignment explanation
Indices: 74846575--74846799 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
74846565 TTGAATGATG
*
74846575 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCAGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATTT
74846640 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * * **
74846695 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCAGACTAAGAT-CCGAAGGCAT
* *
74846757 TTGTGCGA-ATTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
74846800 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 3 0.03
119 68 0.75
120 20 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCAGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:74846821 original size:79 final size:79
Alignment explanation
Indices: 74846628--74846832 Score: 206
Period size: 79 Copynumber: 2.6 Consensus size: 79
74846618 AGACTAAGAT
** **
74846628 CCGAAGGCATTTGTGCGAGAT-ACTAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC
1 CCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAA-ATCCCGAAGGCATTTGTGCGAGATAC
*
74846691 TAATTCCGGGCTAAGC
64 TAATACCGGGCTAAGC
** * *
74846707 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT
1 CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGA-TACT
*
74846771 -ATAACCGGGCTATGTC
65 AAT-ACCGGGCTAAG-C
* *
74846787 CCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
74846833 TACGTGATTT
Statistics
Matches: 109, Mismatches: 11, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
78 5 0.05
79 79 0.72
80 25 0.23
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:74848887 original size:40 final size:39
Alignment explanation
Indices: 74848826--74848974 Score: 175
Period size: 40 Copynumber: 3.9 Consensus size: 39
74848816 AGCATTTGAA
74848826 TGATAT-CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
* * * *
74848864 TGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-
1 TGATATA-CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
*
74848903 TGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
1 TGA-TATA-CCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
*
74848944 TGATATA----TCTAAGACCCGAAGGCATTTGTGC
1 TGATATACCGGGCTAAGACCCGAAGGCATTTGTGC
74848975 TTGTGGTTAT
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
35 23 0.24
38 5 0.05
39 2 0.02
40 62 0.65
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TGATATACCGGGCTAAGACCCGAAGGCATTTGTGCGAGT
Found at i:74850855 original size:41 final size:39
Alignment explanation
Indices: 74850742--74850871 Score: 197
Period size: 39 Copynumber: 3.3 Consensus size: 39
74850732 GGTCTTTAAC
** *
74850742 CCGGATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
* *
74850781 CCGGATATATTTCTAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
74850820 CCGGATATTTTTCCAGCATATATAGCCTGCGGACCTCATGT
1 CCGGATATTTTTCCAGC--ATATAGCCTGCGGACCTCATGT
74850861 CCGGATATTTT
1 CCGGATATTTT
74850872 CAATCTCATA
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
39 49 0.60
41 33 0.40
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.31
Consensus pattern (39 bp):
CCGGATATTTTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:74856877 original size:20 final size:21
Alignment explanation
Indices: 74856854--74856892 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
74856844 ATCAGCTCAC
74856854 TTGAACTTG-ATTTAGCTCCT
1 TTGAACTTGAATTTAGCTCCT
*
74856874 TTGAGCTTGAATTTAGCTC
1 TTGAACTTGAATTTAGCTC
74856893 GTTTCAGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.44
Consensus pattern (21 bp):
TTGAACTTGAATTTAGCTCCT
Found at i:74856901 original size:21 final size:20
Alignment explanation
Indices: 74856859--74856901 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
74856849 CTCACTTGAA
*
74856859 CTTGATTTAGCTCCTTTGAG
1 CTTGATTTAGCTCCTTTCAG
*
74856879 CTTGAATTTAGCTCGTTTCAG
1 CTTG-ATTTAGCTCCTTTCAG
74856900 CT
1 CT
74856902 CATTTCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (20 bp):
CTTGATTTAGCTCCTTTCAG
Found at i:74863254 original size:47 final size:47
Alignment explanation
Indices: 74863200--74863460 Score: 405
Period size: 47 Copynumber: 5.5 Consensus size: 47
74863190 TATTTGAATA
*
74863200 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74863247 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
74863296 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
74863343 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
74863390 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
74863437 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
74863461 GAGTCCCGAA
Statistics
Matches: 200, Mismatches: 12, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
47 155 0.77
49 45 0.22
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:74872021 original size:48 final size:42
Alignment explanation
Indices: 74871982--74872099 Score: 139
Period size: 42 Copynumber: 2.8 Consensus size: 42
74871972 ATGTCAGTAC
74871982 TGATGCCATGTCCCAGACATGGTCTTACAC-AAGACCTCATAT
1 TGATGCCATGTCCCAGACATGGTCTTACACGAA-ACCTCATAT
* *
74872024 TGATGCCATGTCCTAGACATGGTCTTACACGAAATCTCATAT
1 TGATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
** * * * * *
74872066 CAACGCCATATCCCAGATATAGTCTTACATGAAA
1 TGATGCCATGTCCCAGACATGGTCTTACACGAAA
74872100 TCACATACTG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 63 0.97
43 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.27
Consensus pattern (42 bp):
TGATGCCATGTCCCAGACATGGTCTTACACGAAACCTCATAT
Found at i:74872063 original size:42 final size:42
Alignment explanation
Indices: 74871944--74872191 Score: 158
Period size: 48 Copynumber: 5.5 Consensus size: 42
74871934 ACTAATGATA
* *
74871944 TCCCAGATATGGTCTTATACGAAATCTCATGTCAGTACTGATGCCATG
1 TCCCAGACATGGTCTTACACGAAATCTCA--T-A-T--TGATGCCATG
*
74871992 TCCCAGACATGGTCTTACAC-AAGACCTCATATTGATGCCATG
1 TCCCAGACATGGTCTTACACGAA-ATCTCATATTGATGCCATG
* ** * *
74872034 TCCTAGACATGGTCTTACACGAAATCTCATATCAACGCCATA
1 TCCCAGACATGGTCTTACACGAAATCTCATATTGATGCCATG
* * * * *
74872076 TCCCAGATATAGTCTTACATGAAATCACATACTGTGGCTGATGCCATA
1 TCCCAGACATGGTCTTACACGAAATCTCATA---T---TGATGCCATG
* * *
74872124 TCCCAGATATGGTCTTACACTGGCACACATATCA-ATGACGATGCCATG
1 TCCCAGACATGGTCTTACAC--G-A-A-ATCTCATAT--TGATGCCATG
74872172 TCCCAGACATGGTCTTACAC
1 TCCCAGACATGGTCTTACAC
74872192 TGGTTCTCAC
Statistics
Matches: 162, Mismatches: 25, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
42 69 0.43
43 2 0.01
44 1 0.01
45 2 0.01
46 1 0.01
47 2 0.01
48 76 0.47
49 1 0.01
50 1 0.01
51 1 0.01
52 2 0.01
53 4 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATCTCATATTGATGCCATG
Found at i:74879371 original size:131 final size:131
Alignment explanation
Indices: 74879131--74879382 Score: 396
Period size: 131 Copynumber: 1.9 Consensus size: 131
74879121 ATTCATTCAA
* *
74879131 AAATTCTTCAAAATGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTGTT
1 AAATTCTTCAAAATGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTGTT
* * *
74879196 CCGTTGCAATTTCGTGTTTGCTCAAAGTAATCGAATATCACTTCAAAATTTCATTCGTGTCTTTT
66 CCGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAACACTTCAAAATTTCATTCGTGTCTTTT
74879261 G
131 G
* * *
74879262 AAATTCTTCAAAATGAAGACGAGGTTTGATATTTAGCAATTCGCGGAATCGTGCTCTAACGTGTT
1 AAATTCTTCAAAATGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTGTT
** * *
74879327 GGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAGTAACCCTTCAAAATTTCATTC
66 CCGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAACACTTCAAAATTTCATTC
74879383 ATATCTTCTA
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
131 109 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (131 bp):
AAATTCTTCAAAATGAAGACGAGATTCGATATTTAGCAATTCGCGGAATCGTGCCCTAACGTGTT
CCGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAACACTTCAAAATTTCATTCGTGTCTTTT
G
Found at i:74879442 original size:131 final size:131
Alignment explanation
Indices: 74879129--74879484 Score: 329
Period size: 131 Copynumber: 2.7 Consensus size: 131
74879119 TCATTCATTC
* * * * * *
74879129 AAAAATTCTTCAAAATGAAGACGAGATTCGATGTTTGGCAATTCGCGGAATCGTGCCCTAACGTG
1 AAAAATTATTCAAAACGAAGACAACATTCGACGTTTGACAATTCGCGGAATCGTGCCCTAACGTG
** * * * * *
74879194 TTCCGTTGCAATTTCGTGTTTGCTCAAAGTAATCGAATATCACTTCAAAATTTCATTCGTGTCTT
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAACACTTCAAAATTTCATTCATATCTT
74879259 T
131 T
** * * * ** * ** *
74879260 TGAAATTCTTCAAAATGAAGACGAGGTTTGATATTT-AGCAATTCGCGGAATCGTGCTCTAACGT
1 AAAAATTATTCAAAACGAAGACAACATTCGACGTTTGA-CAATTCGCGGAATCGTGCCCTAACGT
* *
74879324 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAGTAACCCTTCAAAATTTCATTCATATCT
65 GTTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAACACTTCAAAATTTCATTCATATCT
74879389 TCT
130 T-T
* * * * * * **
74879392 AAAAATTATTTAAAGCGAAGGCAACATTCGGCGTTTGACAATTCG-AGAATCATGCCCTATTGTG
1 AAAAATTATTCAAAACGAAGACAACATTCGACGTTTGACAATTCGCGGAATCGTGCCCTAACGTG
* * * * *
74879456 CTGGGTTACGATTTCTCGTTTGTTCAAAA
66 TTGGGTTGCAATTTCGCGTTTGCTCAAAA
74879485 CGATCGAACA
Statistics
Matches: 182, Mismatches: 40, Indels: 6
0.80 0.18 0.03
Matches are distributed among these distances:
131 151 0.83
132 30 0.16
133 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (131 bp):
AAAAATTATTCAAAACGAAGACAACATTCGACGTTTGACAATTCGCGGAATCGTGCCCTAACGTG
TTGGGTTGCAATTTCGCGTTTGCTCAAAATAATCGAATAACACTTCAAAATTTCATTCATATCTT
T
Found at i:74891625 original size:133 final size:132
Alignment explanation
Indices: 74891333--74891695 Score: 485
Period size: 133 Copynumber: 2.7 Consensus size: 132
74891323 AGCAAGATGA
* * * *
74891333 CGAATCTTGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGTCACTAACCTAACTCCCTAAAGTT
1 CGAATCTAGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTT
* * *
74891398 GTAGTGGAGTAGGCTGAAATTTTAGGTCTCGTTTCCCTGAAGTTGCAGTGGAGCAGATCAAAGAC
66 GTAGTGGAGTAGGCTGAAATTGTAGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCAAAGAC
74891463 GG
131 GG
* * * * *
74891465 CAAATCTAGGCTTCTTGAAGTTGCAGTGAGGCGGATTTAAGCCACCAACCTAGCTCCCTAAGGTT
1 CGAATCTAGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTT
* * * *
74891530 GTAGTAGAGTAGGCTGAGAATTGTAGATTTTGTTTCCTTG-AGATTGCAGTGGAACAGATCAAAG
66 GTAGTGGAGTAGGCTGA-AATTGTAGATCTCGTTTCCCTGAAG-TTGCAGTGGAACAGATCAAAG
74891594 ACGG
129 ACGG
* * * * *
74891598 TGAATCTAGGCTTCCTGATGTTGCAGTGAAGTAGATTTAAGCCATCACCCTAGCTCCCTAAAGTT
1 CGAATCTAGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTT
**
74891663 GTAGTGGAGTAGGCTGACGGTTGTAGATCTCGT
66 GTAGTGGAGTAGGCTGA-AATTGTAGATCTCGT
74891696 CTCCAGTGGA
Statistics
Matches: 197, Mismatches: 32, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
132 74 0.38
133 123 0.62
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.29
Consensus pattern (132 bp):
CGAATCTAGGCTTCCTGAAGTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTT
GTAGTGGAGTAGGCTGAAATTGTAGATCTCGTTTCCCTGAAGTTGCAGTGGAACAGATCAAAGAC
GG
Found at i:74896316 original size:50 final size:49
Alignment explanation
Indices: 74896253--74896492 Score: 186
Period size: 50 Copynumber: 4.8 Consensus size: 49
74896243 TTAGGTCACG
* *
74896253 TGTGTCGTACTAAGTGCAGGCTACTATGAGTACCGGATAGTTAGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATAGTTAGGTT-CA
* * ** * *
74896303 TGTGCAGTACTAAGTGCAGGTTACTATGCA-TACCCCATAACTTCA--ATCA
1 TGTGTAGTACTAAGTGCAGGCTACTATG-AGTACCAGAT-AGTT-AGGTTCA
* * ** *
74896352 TGTGTATAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGG-TCA
1 TGTG--TAGTACTAAGTGCAGGCTACTATGAGTACCAGATAGTTAGGTTCA
* * * * *
74896402 CGTGTGTAGTACTAAATGCAGGCTACTACGTGTACTAGATTGTT-GGTTTCA
1 --TGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATAGTTAGG-TTCA
74896453 TGTGTAGTACTAAGTGCAGGCTACTATGCA-TACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTATG-AGTACCAGATAG
74896493 CTTCGGTTAC
Statistics
Matches: 152, Mismatches: 25, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
49 43 0.28
50 72 0.47
51 32 0.21
52 5 0.03
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGAGTACCAGATAGTTAGGTTCA
Found at i:74898443 original size:40 final size:40
Alignment explanation
Indices: 74898406--74898578 Score: 217
Period size: 40 Copynumber: 4.3 Consensus size: 40
74898396 TGAGGAATGT
* *
74898406 TATCCGGCCTTAAAGACCAGCAGGCTTCGTGCTGGAATTG
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
*
74898446 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAA-TG
1 TATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTGGAATTG
74898485 TTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 -TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
74898526 TATCTGGGCTTAAAGACCCGTAGGCTACGAGCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
*
74898566 TA-CCGGGTTTAAA
1 TATCCGGGCTTAAA
74898579 TTCCCGTAGG
Statistics
Matches: 117, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
39 12 0.10
40 102 0.87
41 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
Found at i:74898535 original size:80 final size:80
Alignment explanation
Indices: 74898399--74898552 Score: 272
Period size: 80 Copynumber: 1.9 Consensus size: 80
74898389 TGATACTTGA
74898399 GGAATGTTATCCGGCCTTAAAGACCAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACC
1 GGAATGTTATCCGGCCTTAAAGACCAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACC
74898464 CGCAGGCTATATGCT
66 CGCAGGCTATATGCT
* * *
74898479 GGAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGACC
1 GGAATGTTATCCGGCCTTAAAGACCAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACC
*
74898544 CGTAGGCTA
66 CGCAGGCTA
74898553 CGAGCTGGTA
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 70 1.00
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (80 bp):
GGAATGTTATCCGGCCTTAAAGACCAGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACC
CGCAGGCTATATGCT
Found at i:74903256 original size:40 final size:40
Alignment explanation
Indices: 74903159--74903355 Score: 206
Period size: 40 Copynumber: 5.0 Consensus size: 40
74903149 TTGAATGCTG
* * *
74903159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
** *
74903200 T-CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
74903239 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
74903279 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
**
74903319 TCCGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACTA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
74903356 TAACCGGGCC
Statistics
Matches: 132, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 14 0.11
40 109 0.83
41 9 0.07
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:74903296 original size:80 final size:81
Alignment explanation
Indices: 74903159--74903339 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
74903149 TTGAATGCTG
* *
74903159 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATTCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATTCGGACTAAGATCCGAAGGCATT
* *
74903223 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
74903239 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATATT-CGGACTAAGAT-CCGAAGGC
74903300 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
74903319 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
74903340 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 6 0.07
80 75 0.83
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATTCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:74903363 original size:39 final size:38
Alignment explanation
Indices: 74903212--74903379 Score: 158
Period size: 40 Copynumber: 4.2 Consensus size: 38
74903202 GGACTAAGAT
* *
74903212 CCGAAGGCATTTGTGCGAGTTATTAATTCCGGGTTAAGTC
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ACCGGGTTAAGTC
* * *
74903252 CCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAA-ACCGGGTTAAGTC
*
74903292 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATT-GTGCGAGTTACT-AAA-CCGGGTTAAGTC
** ** *
74903332 CCGAAGGCATTGTATGAGTTACTATAACCGGGCCATGTC
1 CCGAAGGCATTGTGCGAGTTACTA-AACCGGGTTAAGTC
74903371 CCGAAGGCA
1 CCGAAGGCA
74903380 CTTGAACGAG
Statistics
Matches: 109, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
39 30 0.28
40 78 0.72
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGAAGGCATTGTGCGAGTTACTAAACCGGGTTAAGTC
Found at i:74911167 original size:40 final size:40
Alignment explanation
Indices: 74911083--74911265 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
74911073 TTGAATGCTG
* * * *
74911083 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
74911122 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
74911163 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
74911203 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
74911242 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
74911266 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 9
0.84 0.09 0.06
Matches are distributed among these distances:
39 28 0.22
40 87 0.70
41 10 0.08
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:74911220 original size:80 final size:80
Alignment explanation
Indices: 74911083--74911262 Score: 235
Period size: 80 Copynumber: 2.3 Consensus size: 80
74911073 TTGAATGCTG
* *
74911083 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
74911147 TGTGCGAGTTATTAAT
66 CGTGCGAGTT-TTAAA
**
74911163 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
74911224 ATTCGTGCGAGTTTTAAA
63 ATTCGTGCGAGTTTTAAA
74911242 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
74911263 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 9
0.86 0.06 0.09
Matches are distributed among these distances:
79 27 0.30
80 54 0.60
81 9 0.10
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAA
Found at i:74911286 original size:39 final size:39
Alignment explanation
Indices: 74911084--74911302 Score: 171
Period size: 40 Copynumber: 5.5 Consensus size: 39
74911074 TGAATGCTGT
* * * *
74911084 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTGTGC-GAGTTACTATAA
*
74911124 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA-T-TAA
1 CCGGGCTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTATAA
* * * *
74911162 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTA-ATT
1 --CCGGGCTAAGTCCCGAAGG-CATTGTGCGAGTTACTATA-A
* *
74911204 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTA-AA
1 CCGGGCTAAGTCCCGAAGGCATT-GTGCGAGTTACTATAA
* **
74911242 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAA
* *
74911282 CCGGGCCATGTCCCGAAGGCA
1 CCGGGCTAAGTCCCGAAGGCA
74911303 CTTGAACGAG
Statistics
Matches: 146, Mismatches: 20, Indels: 27
0.76 0.10 0.14
Matches are distributed among these distances:
38 9 0.06
39 51 0.35
40 76 0.52
41 10 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATAA
Found at i:74921626 original size:22 final size:24
Alignment explanation
Indices: 74921592--74921635 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
74921582 CATCATAATA
*
74921592 TCATCTATTTCAT-ATCACAAAAC
1 TCATCTATATCATCATCACAAAAC
*
74921615 TCAT-TATATCATCATCTCAAA
1 TCATCTATATCATCATCACAAA
74921636 CCAAACCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.39, C:0.25, G:0.00, T:0.36
Consensus pattern (24 bp):
TCATCTATATCATCATCACAAAAC
Found at i:74925447 original size:40 final size:40
Alignment explanation
Indices: 74925386--74925632 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
74925376 CGGAATTTAG
* * * *
74925386 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
74925426 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
74925466 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
74925506 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
74925546 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
74925586 CCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
74925626 CCGGATA
1 CCGGATA
74925633 TCATTCAAAT
Statistics
Matches: 189, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 183 0.97
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:74933912 original size:40 final size:40
Alignment explanation
Indices: 74933808--74934053 Score: 327
Period size: 40 Copynumber: 6.2 Consensus size: 40
74933798 CGGAATTTAG
* * * *
74933808 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
74933848 CCGG-T-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
74933887 CCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
74933927 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
74933967 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
74934007 CCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
74934047 CCGGATA
1 CCGGATA
74934054 TCATTCAAAT
Statistics
Matches: 189, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 29 0.15
40 154 0.81
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:74938896 original size:29 final size:29
Alignment explanation
Indices: 74938846--74938986 Score: 124
Period size: 29 Copynumber: 4.9 Consensus size: 29
74938836 TTTCTTCAAC
* * * * *
74938846 GATGGTTGAAACCATTCTTTTTAACATTT
1 GATGGTCGAAACCATCCCTTTTCATATTT
74938875 GATGGTCGAAACCATCCCTTTTCATATTT
1 GATGGTCGAAACCATCCCTTTTCATATTT
* * * *
74938904 GATAG-CCAAAGCTATCCCTTTTCATATTC
1 GATGGTCGAAA-CCATCCCTTTTCATATTT
** *
74938933 GATGGTCGTCACCAT-CCTTTTCATAGTT
1 GATGGTCGAAACCATCCCTTTTCATATTT
** *
74938961 GATGGTCGTCACTATCCCTTTTCATA
1 GATGGTCGAAACCATCCCTTTTCATA
74938987 ATCGGTAGCC
Statistics
Matches: 92, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
28 29 0.32
29 61 0.66
30 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.39
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCATATTT
Found at i:74938964 original size:28 final size:29
Alignment explanation
Indices: 74938917--74938986 Score: 108
Period size: 28 Copynumber: 2.4 Consensus size: 29
74938907 AGCCAAAGCT
74938917 ATCCCTTTTCATATTCGATGGTCGTCACC
1 ATCCCTTTTCATATTCGATGGTCGTCACC
*
74938946 AT-CCTTTTCATAGTT-GATGGTCGTCACT
1 ATCCCTTTTCATA-TTCGATGGTCGTCACC
74938974 ATCCCTTTTCATA
1 ATCCCTTTTCATA
74938987 ATCGGTAGCC
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
28 24 0.63
29 14 0.37
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.41
Consensus pattern (29 bp):
ATCCCTTTTCATATTCGATGGTCGTCACC
Found at i:74943325 original size:27 final size:27
Alignment explanation
Indices: 74943295--74943506 Score: 217
Period size: 27 Copynumber: 7.9 Consensus size: 27
74943285 GGGCAAATGG
* * *
74943295 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
**
74943322 TAATTCTACCCTACAAGGGTATTTTAA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
74943349 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
74943376 TAATTCTACCCTAC-AGGGTTATTTC-A
1 TAATTCTACCCTACAAGGG-TATTTCGA
74943402 GTAATTCTACCCTAC-AGGGTTATTTC-A
1 -TAATTCTACCCTACAAGGG-TATTTCGA
*
74943429 GTAATTCTACCCTAC-AGGGATATTTCGG
1 -TAATTCTACCCTACAAGGG-TATTTCGA
* *
74943457 TAATTCTA-CCTA-TAGAGGTATTTCGG
1 TAATTCTACCCTACAAG-GGTATTTCGA
74943483 TAATTC-ACCCTAC-AGGGTTATTTC
1 TAATTCTACCCTACAAGGG-TATTTC
74943507 AGTAATTTTG
Statistics
Matches: 166, Mismatches: 11, Indels: 17
0.86 0.06 0.09
Matches are distributed among these distances:
25 3 0.02
26 37 0.22
27 126 0.76
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:74943478 original size:26 final size:27
Alignment explanation
Indices: 74943322--74943513 Score: 243
Period size: 27 Copynumber: 7.2 Consensus size: 27
74943312 GGTATCTCGA
* *
74943322 TAATTCTACCCTACAAGGG-TATTTTAA
1 TAATTCTACCCTAC-AGGGTTATTTCAG
*
74943349 TATTTCTACCCTACAAGGG-TATTTC-G
1 TAATTCTACCCTAC-AGGGTTATTTCAG
74943375 ATAATTCTACCCTACAGGGTTATTTCAG
1 -TAATTCTACCCTACAGGGTTATTTCAG
74943403 TAATTCTACCCTACAGGGTTATTTCAG
1 TAATTCTACCCTACAGGGTTATTTCAG
* *
74943430 TAATTCTACCCTACAGGGATATTTCGG
1 TAATTCTACCCTACAGGGTTATTTCAG
* *
74943457 TAATTCTA-CCTATAGAGG-TATTTCGG
1 TAATTCTACCCTACAG-GGTTATTTCAG
74943483 TAATTC-ACCCTACAGGGTTATTTCAG
1 TAATTCTACCCTACAGGGTTATTTCAG
74943509 TAATT
1 TAATT
74943514 TTGTAAATTG
Statistics
Matches: 150, Mismatches: 9, Indels: 13
0.87 0.05 0.08
Matches are distributed among these distances:
25 3 0.02
26 42 0.28
27 104 0.69
28 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGTTATTTCAG
Found at i:74943546 original size:27 final size:27
Alignment explanation
Indices: 74943508--74943644 Score: 204
Period size: 27 Copynumber: 5.1 Consensus size: 27
74943498 GGTTATTTCA
* * *
74943508 GTAATTTTGTAAATTGAAGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
74943535 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
74943562 GTAATTCTATAAATCGAGAGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
74943589 GT-ATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
74943615 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
74943642 GTA
1 GTA
74943645 CTATAAATCG
Statistics
Matches: 99, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
26 23 0.23
27 76 0.77
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Done.