Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 234 of 295
Found at i:74943610 original size:80 final size:77
Alignment explanation
Indices: 74943515--74943660 Score: 229
Period size: 80 Copynumber: 1.9 Consensus size: 77
74943505 TCAGTAATTT
* * *
74943515 TGTAAATTGAAGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAG
1 TGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGT-A--CTATAAATCGAG
74943580 AGTAAAATGGTATTC
63 AGTAAAATGGTATTC
*
74943595 TGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAATCGAGAGT
1 TGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAATCGAGAGT
74943660 A
66 A
74943661 TTTTGTTAAT
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
77 16 0.26
79 1 0.02
80 45 0.73
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (77 bp):
TGTAAATCGAAGGTAAAATAGTAATTCTATAAATCGAGGGTAAAATGGTACTATAAATCGAGAGT
AAAATGGTATTC
Found at i:74943612 original size:53 final size:53
Alignment explanation
Indices: 74943527--74943656 Score: 210
Period size: 53 Copynumber: 2.5 Consensus size: 53
74943517 TAAATTGAAG
*
74943527 GTAAAATGGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATCGAGA
1 GTAAAATGGT-ATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGA
*
74943581 GTAAAATGGTATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGG
1 GTAAAATGGTATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGA
*
74943634 GTAAAATGGTA--CTATAAATCGAG
1 GTAAAATGGTATTCTGTAAATCGAG
74943657 AGTATTTTGT
Statistics
Matches: 73, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
51 11 0.15
53 52 0.71
54 10 0.14
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.29
Consensus pattern (53 bp):
GTAAAATGGTATTCTGTAAATCGAGGGTAAAATAGTAATTCTATAAATCGAGA
Found at i:74943727 original size:26 final size:27
Alignment explanation
Indices: 74943658--74943782 Score: 171
Period size: 27 Copynumber: 4.7 Consensus size: 27
74943648 TAAATCGAGA
* * *
74943658 GTATTTTGTTAATTTCACAAATCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* * *
74943685 GTATTTTGGTAAGTTTACAAGCCAGTG
1 GTATTTTGGTAATTTTACAAACCAGGG
74943712 GTA-TTTGGTAATTTTACAAACCAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
* *
74943738 GTATTTTAGTAATTTTACAAACAAGGG
1 GTATTTTGGTAATTTTACAAACCAGGG
74943765 GTATTTTGGTAATTTTAC
1 GTATTTTGGTAATTTTAC
74943783 TGATCGAAGG
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 23 0.27
27 62 0.73
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACAAACCAGGG
Found at i:74943731 original size:53 final size:54
Alignment explanation
Indices: 74943658--74943782 Score: 171
Period size: 53 Copynumber: 2.3 Consensus size: 54
74943648 TAAATCGAGA
* * * * * * *
74943658 GTATTTTGTTAATTTCACAAATCAGGGGTATTTTGGTAAGTTTACAAGCCAGTG
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAAGTTTACAAACAAGGG
*
74943712 GTA-TTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACAAGGG
1 GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAAGTTTACAAACAAGGG
74943765 GTATTTTGGTAATTTTAC
1 GTATTTTGGTAATTTTAC
74943783 TGATCGAAGG
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
53 45 0.73
54 17 0.27
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (54 bp):
GTATTTTGGTAATTTTACAAACCAGGGGTATTTTAGTAAGTTTACAAACAAGGG
Found at i:74943795 original size:80 final size:80
Alignment explanation
Indices: 74943658--74943833 Score: 189
Period size: 80 Copynumber: 2.2 Consensus size: 80
74943648 TAAATCGAGA
* *
74943658 GTATTTT-GTTAATTTCACAAATCAGGGGTATTTTGGTAAGTTTACAAGCCAGTGGTA-TTTGGT
1 GTATTTTAG-TAATTTTACAAATCAGGGGTATTTTGGTAAGTTTACAAGCCAGAGGTATTTTGGT
*
74943721 AATTTTACAAACCAGGG
65 AATTTTACAAACCA-AG
* * * *
74943738 GTATTTTAGTAATTTTACAAA-CAAGGGGTATTTTGGTAATTTTACTGATCGA-AGGTATTTTGG
1 GTATTTTAGTAATTTTACAAATC-AGGGGTATTTTGGTAAGTTTAC-AAGCCAGAGGTATTTTGG
**
74943801 TAATTTTGTAAACCAAG
64 TAATTTTACAAACCAAG
* *
74943818 GTATTTCAATAATTTT
1 GTATTTTAGTAATTTT
74943834 GTAAACTAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
79 1 0.01
80 58 0.72
81 22 0.27
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (80 bp):
GTATTTTAGTAATTTTACAAATCAGGGGTATTTTGGTAAGTTTACAAGCCAGAGGTATTTTGGTA
ATTTTACAAACCAAG
Found at i:74943797 original size:54 final size:53
Alignment explanation
Indices: 74943662--74943807 Score: 150
Period size: 53 Copynumber: 2.7 Consensus size: 53
74943652 TCGAGAGTAT
* * * * * * * *
74943662 TTTGTTAATTTCACAAATCAGGGGTATTTTGGTAAGTTTACAAGCCAGTGGTA
1 TTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACAAGGGGTA
* *
74943715 TTTGGTAATTTTACAAACCAGGGGTATTTTAGTAATTTTACAAACAAGGGGTA
1 TTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACAAGGGGTA
** *
74943768 TTTTGGTAATTTTACTGATC-GAAGGTATTTTGGTAATTTT
1 -TTTGGTAATTTTACAAACCAG-AGGTATTTTGGTAATTTT
74943808 GTAAACCAAG
Statistics
Matches: 78, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
53 46 0.59
54 32 0.41
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (53 bp):
TTTGGTAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACAAGGGGTA
Found at i:74956681 original size:40 final size:40
Alignment explanation
Indices: 74956651--74956951 Score: 349
Period size: 40 Copynumber: 7.5 Consensus size: 40
74956641 AGCATGATTA
* * *
74956651 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* ** *
74956691 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
74956731 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
74956771 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * *
74956811 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
74956851 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * *
74956892 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
74956932 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
74956952 CATCATTCGA
Statistics
Matches: 222, Mismatches: 34, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
39 3 0.01
40 199 0.90
41 20 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:74957352 original size:43 final size:43
Alignment explanation
Indices: 74957291--74957390 Score: 182
Period size: 43 Copynumber: 2.3 Consensus size: 43
74957281 ACTTTAAACT
74957291 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
* *
74957334 CGCACACTTAGTGCCAATCTCACATCCGTGAACACTTCTTGCC
1 CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
74957377 CGCACACTTAGTGC
1 CGCACACTTAGTGC
74957391 TGAAAACCAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 55 1.00
ACGTcount: A:0.25, C:0.36, G:0.15, T:0.24
Consensus pattern (43 bp):
CGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATTGCC
Found at i:74959292 original size:37 final size:37
Alignment explanation
Indices: 74959242--74959320 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
74959232 TTATTACGAA
* * * *
74959242 GTCTTACCCGGACATAATCTCCACCCGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
74959279 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
74959316 GTCTT
1 GTCTT
74959321 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:74959695 original size:47 final size:47
Alignment explanation
Indices: 74959438--74959947 Score: 851
Period size: 47 Copynumber: 10.7 Consensus size: 47
74959428 GCCCTTCGGG
*
74959438 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
74959488 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
74959537 AC-TTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
74959585 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
74959634 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
74959681 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
74959728 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
74959775 ACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
* *
74959822 ACTTTCACATTCATCACATCGGCCATTAGGCATTATCACATATATGC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
74959869 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
74959916 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
74959948 ATACTATCAT
Statistics
Matches: 450, Mismatches: 9, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
47 267 0.59
48 48 0.11
49 131 0.29
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
Found at i:74959721 original size:22 final size:23
Alignment explanation
Indices: 74959688--74959768 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
74959678 TACACTTTCA
74959688 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
**** ***
74959711 CATT-ATCACATATATACACTTTCA
1 CATTCATCACAT-CGGCCA-TTAGG
74959735 CATTCATCACATCGGCCATTAGG
1 CATTCATCACATCGGCCATTAGG
74959758 CATT-ATCACAT
1 CATTCATCACAT
74959769 ATATACACTT
Statistics
Matches: 41, Mismatches: 14, Indels: 7
0.66 0.23 0.11
Matches are distributed among these distances:
22 14 0.34
23 12 0.29
24 8 0.20
25 7 0.17
ACGTcount: A:0.31, C:0.28, G:0.10, T:0.31
Consensus pattern (23 bp):
CATTCATCACATCGGCCATTAGG
Found at i:74961787 original size:17 final size:18
Alignment explanation
Indices: 74961759--74961795 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
74961749 TCTCCTAAAT
*
74961759 TTTAATTTTATTTAATTA
1 TTTAATTTTATTAAATTA
74961777 TTTAA-TTTATTAAATTA
1 TTTAATTTTATTAAATTA
74961794 TT
1 TT
74961796 AATAGTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTAATTTTATTAAATTA
Found at i:74964992 original size:27 final size:27
Alignment explanation
Indices: 74964955--74965272 Score: 424
Period size: 27 Copynumber: 11.8 Consensus size: 27
74964945 CCAAATTGAT
*
74964955 AAATGACTATTTTGCCCTTATCTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
74964982 AAATGATTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * * *
74965009 AAATGATTGTTTTGCCCTTGTATGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
74965036 AAATGATTATTTTGCCCTTTTGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
74965063 AAATGACTATTTTGCCCATATGCGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
74965090 AAATGACTACTTTGCTCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
74965117 TAGTGACTATTTTG-CCTTAATGTGGTA
1 AAATGACTATTTTGCCCTT-ATGTGGTA
*
74965144 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* *
74965171 AAATGACTTTTTTGCCCTTATGTAGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
74965198 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
*
74965225 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATGTGGTA
* * *
74965252 AGATGACTGTTTT-TCCTTATG
1 AAATGACTATTTTGCCCTTATG
74965273 CGATGTATAC
Statistics
Matches: 257, Mismatches: 32, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 9 0.04
27 244 0.95
28 4 0.02
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATGTGGTA
Found at i:74965619 original size:18 final size:18
Alignment explanation
Indices: 74965592--74965632 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
74965582 ACTTGTATAT
* *
74965592 TGTTATTGCACTGATTAC
1 TGTTACTGCACTAATTAC
*
74965610 TGTTACTGCACTAATTAT
1 TGTTACTGCACTAATTAC
74965628 TGTTA
1 TGTTA
74965633 TTGTAATGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.46
Consensus pattern (18 bp):
TGTTACTGCACTAATTAC
Found at i:74966762 original size:13 final size:13
Alignment explanation
Indices: 74966746--74966771 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74966736 GAAATGATTT
74966746 TTTGAAAATTTTG
1 TTTGAAAATTTTG
74966759 TTTGAAAATTTTG
1 TTTGAAAATTTTG
74966772 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:74968001 original size:48 final size:48
Alignment explanation
Indices: 74967854--74968001 Score: 138
Period size: 48 Copynumber: 3.1 Consensus size: 48
74967844 ATGTGAATAT
* *
74967854 TGAGATCTCATGTAAGACCATATTTGGGATATGGCATCGGCCTCGATA
1 TGAGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCGATA
* * * * * * ** *
74967902 AGAGATCCCATATAAAACC-TCGTTTAGGACATGGCATCGATAT-TAGTA
1 TGAGATCCCATGTAAGACCAT-ATTTGGGATATGGCATCGGCATCGA-TA
* * *
74967950 TGAGATCCCATGCAAGACCATATTTGGGATATGGCATTGGCATCGACA
1 TGAGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCGATA
74967998 TGAG
1 TGAG
74968002 GTCTCGTATA
Statistics
Matches: 73, Mismatches: 23, Indels: 8
0.70 0.22 0.08
Matches are distributed among these distances:
47 2 0.03
48 69 0.95
49 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (48 bp):
TGAGATCCCATGTAAGACCATATTTGGGATATGGCATCGGCATCGATA
Found at i:74973482 original size:18 final size:18
Alignment explanation
Indices: 74973459--74973494 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
74973449 TGTACGAGTA
74973459 AGACCATGGCATCGATAT
1 AGACCATGGCATCGATAT
74973477 AGACCATGGCATCGATAT
1 AGACCATGGCATCGATAT
74973495 GTGATACCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (18 bp):
AGACCATGGCATCGATAT
Found at i:74977997 original size:48 final size:48
Alignment explanation
Indices: 74977944--74978129 Score: 176
Period size: 48 Copynumber: 3.9 Consensus size: 48
74977934 ATGTGAGTAT
* * * *
74977944 TGAGATCCCGTGTAAGACCATATCTAGGATATGGCATCGGCATTGATA
1 TGAGATCCCATATAAGACCATATCTGGGACATGGCATCGGCATTGATA
* ** ** * *
74977992 AGAGATCCCATATAAGATGACGTCTGGGACATGGCATCGGTA-TCAGTA
1 TGAGATCCCATATAAGACCATATCTGGGACATGGCATCGGCATTGA-TA
* * * * *
74978040 TGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACA
1 TGAGATCCCATATAAGACCATATCTGGGACATGGCATCGGCATTGATA
* * * *
74978088 TGAGGTCTCGTATAAGACCATGTCTGGGACATGGCATCGGCA
1 TGAGATCCCATATAAGACCATATCTGGGACATGGCATCGGCA
74978130 CCGTTATGAG
Statistics
Matches: 106, Mismatches: 30, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
47 2 0.02
48 103 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (48 bp):
TGAGATCCCATATAAGACCATATCTGGGACATGGCATCGGCATTGATA
Found at i:74978082 original size:96 final size:95
Alignment explanation
Indices: 74977939--74978220 Score: 306
Period size: 96 Copynumber: 3.0 Consensus size: 95
74977929 ACGACATGTG
*
74977939 AGTATTGAGATCCCGTGTAAGACCATATCTAGGATATGGCATCGGCATTGATAAGAGATCCCATA
1 AGTA-TGAGATCCCGTGTAAGACCATATCTAGGATATGGCATTGGCATTGATAAGAGATCCCATA
** *
74978004 TAAGATGACGTCTGGGACATGGCATCGGTATC
65 TAAGACCACGTCTGGGACATGGCATCGGCA-C
* * * * * * * *
74978036 AGTATGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGACATGAGGTCTCGTAT
1 AGTATGAGATCCCGTGTAAGACCATATCTAGGATATGGCATTGGCATTGATAAGAGATCCCATAT
*
74978101 AAGACCATGTCTGGGACATGGCATCGGCAC
66 AAGACCACGTCTGGGACATGGCATCGGCAC
* * * **
74978131 CGTTATGAGA-CTTCGTGTAAGACCATAGCTAGG-T-T-G--TTGGCATTGATGCGAGATCCCAT
1 AG-TATGAGATC-CCGTGTAAGACCATATCTAGGATATGGCATTGGCATTGATAAGAGATCCCAT
* *
74978190 GTAAGACCACGTCTGGGACATGGCATTGGCA
64 ATAAGACCACGTCTGGGACATGGCATCGGCA
74978221 TCTTTTCATG
Statistics
Matches: 155, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
91 44 0.28
93 1 0.01
94 1 0.01
95 4 0.03
96 101 0.65
97 4 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (95 bp):
AGTATGAGATCCCGTGTAAGACCATATCTAGGATATGGCATTGGCATTGATAAGAGATCCCATAT
AAGACCACGTCTGGGACATGGCATCGGCAC
Found at i:74978139 original size:48 final size:47
Alignment explanation
Indices: 74978013--74978156 Score: 137
Period size: 48 Copynumber: 3.0 Consensus size: 47
74978003 ATAAGATGAC
* * * * *
74978013 GTCTGGGACATGGCATCGGTATCAGTATGAGATCCCATGTAAGACCAT
1 GTCTGGGACATGGCATCGGCA-CCGTATGAGGTCTCGTGTAAGACCAT
* * * * * *
74978061 ATCTGGGATATGGCATTGGCATCGACATGAGGTCTCGTATAAGACCAT
1 GTCTGGGACATGGCATCGGCACCG-TATGAGGTCTCGTGTAAGACCAT
*
74978109 GTCTGGGACATGGCATCGGCACCGTTATGA-GACTTCGTGTAAGACCAT
1 GTCTGGGACATGGCATCGGCACCG-TATGAGGTC-TCGTGTAAGACCAT
74978157 AGCTAGGTTG
Statistics
Matches: 75, Mismatches: 19, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
47 3 0.04
48 72 0.96
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (47 bp):
GTCTGGGACATGGCATCGGCACCGTATGAGGTCTCGTGTAAGACCAT
Found at i:74981283 original size:42 final size:43
Alignment explanation
Indices: 74981202--74981339 Score: 124
Period size: 43 Copynumber: 3.2 Consensus size: 43
74981192 TCCTAGACGT
*
74981202 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAG
1 GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGATAG
* * * *
74981245 GGTCTTGCATGAAATCAAATA-CGATGCTGA-TGTCCCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGC-CACTGTCCCAGATAG
* * *
74981287 TGTTTTACATGTAAATCATAA-GTCGATGCCAAC-GTCCCAGAT-G
1 GGTCTTACATG-AAATCA-AATATCGATGCC-ACTGTCCCAGATAG
74981330 TGGTCTTACA
1 -GGTCTTACA
74981340 CGATAACACA
Statistics
Matches: 74, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
42 24 0.32
43 26 0.35
44 24 0.32
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCACTGTCCCAGATAG
Found at i:74982438 original size:13 final size:13
Alignment explanation
Indices: 74982420--74982444 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74982410 AGAAACGATT
74982420 AAATTTTCATACG
1 AAATTTTCATACG
74982433 AAATTTTCATAC
1 AAATTTTCATAC
74982445 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATTTTCATACG
Found at i:74996494 original size:27 final size:27
Alignment explanation
Indices: 74996463--74996640 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
74996453 TAAATTGTAC
74996463 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
74996490 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74996516 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
74996544 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
74996572 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
74996599 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
74996626 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
74996641 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:74996577 original size:82 final size:81
Alignment explanation
Indices: 74996464--74996619 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
74996454 AAATTGTACA
* *
74996464 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
74996528 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
74996545 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
74996610 TGCGAGTTGA
65 TGCGAATTGA
74996620 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:74996631 original size:82 final size:81
Alignment explanation
Indices: 74996460--74996640 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
74996450 GATTAAATTG
* *
74996460 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
74996525 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
74996541 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
74996605 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
74996623 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
74996641 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75004590 original size:27 final size:27
Alignment explanation
Indices: 75004560--75004737 Score: 151
Period size: 27 Copynumber: 6.6 Consensus size: 27
75004550 ATATTGAGCC
* *
75004560 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
75004587 CGCACGCTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
75004614 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
75004642 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
75004669 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
75004696 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
75004723 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
75004738 GTACAATTTA
Statistics
Matches: 122, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
27 98 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75004720 original size:54 final size:55
Alignment explanation
Indices: 75004560--75004737 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 55
75004550 ATATTGAGCC
* * * * * * * *
75004560 CGCACACTCAGTGCTATATAATCA-ACTCGCACGCTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* ** * *
75004614 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
* **
75004669 CGCACACTTAGTGC-ATCATATTCA-TTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
*
75004723 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
75004738 GTACAATTTA
Statistics
Matches: 103, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
54 58 0.56
55 45 0.44
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAGACTCGCACACTGAGTGCAACATAGTCAAAT
Found at i:75017290 original size:22 final size:22
Alignment explanation
Indices: 75017262--75017305 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
75017252 GAACCACTTG
75017262 GAATACTAAGGATACACGGATA
1 GAATACTAAGGATACACGGATA
75017284 GAATACTAAGGATACACGGATA
1 GAATACTAAGGATACACGGATA
75017306 ACTTACCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.23, T:0.18
Consensus pattern (22 bp):
GAATACTAAGGATACACGGATA
Found at i:75017496 original size:55 final size:53
Alignment explanation
Indices: 75017364--75017496 Score: 167
Period size: 53 Copynumber: 2.5 Consensus size: 53
75017354 AACTTACTAT
* * *
75017364 TGCCATGTCTCGACATGGTCTTACATGATATCATTGCCTTATGAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGAGACCATTGCCTTATGAACTCACCAA
* * * * * *
75017417 TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGAGACCATTGCCTTAT-G-AACTCACCAA
75017472 TGCCATGTCTTGACATGGTCTTACA
1 TGCCATGTCTTGACATGGTCTTACA
75017497 CCAATTGCCA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
53 35 0.52
54 1 0.01
55 31 0.46
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGAGACCATTGCCTTATGAACTCACCAA
Found at i:75024781 original size:28 final size:28
Alignment explanation
Indices: 75024718--75024899 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
75024708 ATATTAAGTC
*
75024718 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
75024745 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
75024773 TGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75024801 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
75024829 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75024857 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
75024886 CGTACACTTAGTGC
1 CGCACACTTAGTGC
75024900 CAATCTCATG
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 21 0.15
28 104 0.73
29 18 0.13
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75026769 original size:89 final size:90
Alignment explanation
Indices: 75026624--75026839 Score: 273
Period size: 89 Copynumber: 2.4 Consensus size: 90
75026614 TCAAATTCAT
* * * * ** *
75026624 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATTTCACCAACATTATAGCTTG
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATCTCACCGGCATTATAGCCTG
*
75026685 CTAGGCTCGAAA-GCCCGAATAGTATC
65 CTAGGCTC-AAAGGCCCGAATAATATC
* *
75026711 TCA-CAGCATTGTAGCCTGCTAGGCTCAAATGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
75026775 TAGGCTCAAAGGCCCGAATAATATC
66 TAGGCTCAAAGGCCCGAATAATATC
*
75026800 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
75026840 ATCAAATCCA
Statistics
Matches: 111, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
86 6 0.05
87 17 0.15
88 9 0.08
89 45 0.41
90 34 0.31
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (90 bp):
TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATCTCACCGGCATTATAGCCTGC
TAGGCTCAAAGGCCCGAATAATATC
Found at i:75026780 original size:45 final size:45
Alignment explanation
Indices: 75026624--75026839 Score: 282
Period size: 45 Copynumber: 4.9 Consensus size: 45
75026614 TCAAATTCAT
* * *
75026624 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
** *
75026666 TCACCAACATTATAGCTTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
* * *
75026711 TCA-CAGCATTGTAGCCTGCTAGGCTCAAATGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
75026755 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
75026800 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
75026840 ATCAAATCCA
Statistics
Matches: 154, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
42 9 0.06
43 16 0.10
44 42 0.27
45 86 0.56
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:75031009 original size:23 final size:23
Alignment explanation
Indices: 75030979--75031024 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
75030969 ATCCCAGATA
75030979 GGTCTTACGCTTAGCACAAGTCG
1 GGTCTTACGCTTAGCACAAGTCG
*
75031002 GGTCTTACGCTTAGCACAGGTCG
1 GGTCTTACGCTTAGCACAAGTCG
75031025 AGCCGATGCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (23 bp):
GGTCTTACGCTTAGCACAAGTCG
Found at i:75033461 original size:45 final size:45
Alignment explanation
Indices: 75033199--75033460 Score: 345
Period size: 45 Copynumber: 5.9 Consensus size: 45
75033189 TCGAATTCAT
* * *
75033199 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
** **
75033241 TCACCAACATTATAGCCTATTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
*
75033286 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
75033331 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
** ** **
75033376 TCACCGATATTATAGCCTGCTAGGCTCGTAGGCCCGAATAACATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
75033421 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
75033461 ATCAAATCCA
Statistics
Matches: 191, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
42 9 0.05
43 12 0.06
44 8 0.04
45 161 0.84
46 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:75038778 original size:23 final size:23
Alignment explanation
Indices: 75038752--75038800 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
75038742 TACTTTTGCT
75038752 CTTC-TAGCATGAACTTGTCTTAC
1 CTTCTTAGCAT-AACTTGTCTTAC
*
75038775 CTTCTTAGTATAACTTGTCTTAC
1 CTTCTTAGCATAACTTGTCTTAC
75038798 CTT
1 CTT
75038801 ACCTTACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.20, C:0.24, G:0.10, T:0.45
Consensus pattern (23 bp):
CTTCTTAGCATAACTTGTCTTAC
Found at i:75055878 original size:80 final size:80
Alignment explanation
Indices: 75055726--75055918 Score: 221
Period size: 80 Copynumber: 2.4 Consensus size: 80
75055716 CGGTTTTAGT
* * *
75055726 AACTCACACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTT
1 AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
*
75055791 AACCCGGATTTA-AC
66 AACCCGGATATATAC
** *
75055805 AACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATC
1 AACTCGCAC-AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGA-C
** *
75055869 TTAGTCCGGATATATTC
64 TTAACCCGGATATATAC
* * *
75055886 -ACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 AAC-TCGCACAATGCCTTCGGGACTTAACCCGGA
75055919 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
79 11 0.11
80 80 0.82
81 6 0.06
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (80 bp):
AACTCGCACAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATATAC
Found at i:75055879 original size:40 final size:40
Alignment explanation
Indices: 75055696--75055865 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
75055686 TCCTCGTTCA
* * * ** *
75055696 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75055735 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
75055775 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
75055815 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
75055855 AAGGCCTTCGG
1 AATGCCTTCGG
75055866 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 33 0.28
40 86 0.72
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:75055917 original size:120 final size:119
Alignment explanation
Indices: 75055696--75055918 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
75055686 TCCTCGTTCA
* * * *
75055696 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
* *
75055761 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * **
75055815 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CTTAACCCGGA
* *
75055879 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
75055919 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACTTAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:75055927 original size:41 final size:41
Alignment explanation
Indices: 75055850--75055927 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
75055840 TTAGTATCTC
* * *
75055850 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
75055891 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
75055928 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:75071988 original size:38 final size:38
Alignment explanation
Indices: 75071934--75072024 Score: 130
Period size: 38 Copynumber: 2.4 Consensus size: 38
75071924 CTAACGGGGT
* *
75071934 TAAGTCCGAAGACAATTGTGCTAG-TATTAATTCCGGGC
1 TAAGTCCGAAGGCAATTGTGC-AGTTACTAATTCCGGGC
*
75071972 TAAGTCCGAAGGCAATTGTGCGGTTACTAATTCCGGGC
1 TAAGTCCGAAGGCAATTGTGCAGTTACTAATTCCGGGC
75072010 TAAGTCCCGAAGGCA
1 TAAGT-CCGAAGGCA
75072025 TTTGGAACCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
37 1 0.02
38 38 0.79
39 9 0.19
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (38 bp):
TAAGTCCGAAGGCAATTGTGCAGTTACTAATTCCGGGC
Found at i:75073793 original size:29 final size:29
Alignment explanation
Indices: 75073730--75073797 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
75073720 TAATCAACCG
75073730 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
75073759 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75073788 CGCACACTTA
1 CGCACACTTA
75073798 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75073938 original size:29 final size:30
Alignment explanation
Indices: 75073899--75073977 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
75073889 CTTAATAATC
75073899 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
75073929 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
75073958 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75073978 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:75073971 original size:174 final size:174
Alignment explanation
Indices: 75073448--75073946 Score: 935
Period size: 174 Copynumber: 2.9 Consensus size: 174
75073438 TCAAGGTACA
* * *
75073448 TACCTTTTCCGCTGTGCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATAGAA
1 TACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAA
*
75073513 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTAAT
66 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACT
75073578 TTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
131 TTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
75073622 TACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAA
1 TACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAA
* *
75073687 AATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGCACT
66 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACT
75073752 TTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
131 TTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
75073796 TACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAA
1 TACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAA
75073861 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACT
66 AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACT
*
75073926 TTAAACTCGCACACTTAGTGC
131 TTAAACTCACACACTTAGTGC
75073947 TGTACAATTT
Statistics
Matches: 316, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 316 1.00
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
TACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAGAA
AATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGTACT
TTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACACT
Found at i:75092761 original size:357 final size:357
Alignment explanation
Indices: 75092105--75092809 Score: 1365
Period size: 357 Copynumber: 2.0 Consensus size: 357
75092095 CAAAGCACCT
**
75092105 ATGATTCACAATGATCCACCATTAGTCACATTTGTGATAAATCCAAAACCAAAGTATTGAAATCA
1 ATGATTCACAATGATCCACCATTAGTCACATCCGTGATAAATCCAAAACCAAAGTATTGAAATCA
75092170 CTCTAACTTACTCATTGCTACTTACCAATCCACCAATCACCAGACCTTTTTGCTCCACACCCCAC
66 CTCTAACTTACTCATTGCTACTTACCAATCCACCAATCACCAGACCTTTTTGCTCCACACCCCAC
75092235 GAACTCTCTCCAAAACTTTAACCTTTATCTGAAACAGTTAACCGATTCATCAGAAGTTATAATCC
131 GAACTCTCTCCAAAACTTTAACCTTTATCTGAAACAGTTAACCGATTCATCAGAAGTTATAATCC
* *
75092300 CTTGTAAATATAAATAATACCTAAAGTACTTACCATGAGTGATAGGATTACTTATTGTGAAAGGA
196 CTTGTAAATATAAATAATACCTAAAGTACTTACCACGAGTGACAGGATTACTTATTGTGAAAGGA
*
75092365 TAATTGGCCTAACCCCCTTGACTATGGAGATCGCGCCCCTAGCAACATTCGGCAACCACAAAGTT
261 TAATTGGCCTAACCCCCTTGACTATGGAGATCACGCCCCTAGCAACATTCGGCAACCACAAAGTT
75092430 AAGTGACTGTCATTAAGGTGAAACAGTTACCA
326 AAGTGACTGTCATTAAGGTGAAACAGTTACCA
75092462 ATGATTCACAATGATCCACCATTAGTCACATCCGTGATAAATCCAAAACCAAAGTATTGAAATCA
1 ATGATTCACAATGATCCACCATTAGTCACATCCGTGATAAATCCAAAACCAAAGTATTGAAATCA
75092527 CTCTAACTTACTCATTGCTACTTACCAATCCACCAATCACCAGACCTTTTTGCTCCACACCCCAC
66 CTCTAACTTACTCATTGCTACTTACCAATCCACCAATCACCAGACCTTTTTGCTCCACACCCCAC
75092592 GAACTCTCTCCAAAACTTTAACCTTTATCTGAAACAGTTAACCGATTCATCAGAAGTTATAATCC
131 GAACTCTCTCCAAAACTTTAACCTTTATCTGAAACAGTTAACCGATTCATCAGAAGTTATAATCC
75092657 CTTGTAAATATAAATAATACCTAAAGTACTTACCACGAGTGACAGGATTACTTATTGTGAAAGGA
196 CTTGTAAATATAAATAATACCTAAAGTACTTACCACGAGTGACAGGATTACTTATTGTGAAAGGA
75092722 TAATTGGCCTAACCCCCTTGACTATGGAGATCACGCCCCTAGCAACATTCGGCAACCACAAAGTT
261 TAATTGGCCTAACCCCCTTGACTATGGAGATCACGCCCCTAGCAACATTCGGCAACCACAAAGTT
75092787 AAGTGACTGTCATTAAGGTGAAA
326 AAGTGACTGTCATTAAGGTGAAA
75092810 TAGGGGTGAA
Statistics
Matches: 343, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
357 343 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (357 bp):
ATGATTCACAATGATCCACCATTAGTCACATCCGTGATAAATCCAAAACCAAAGTATTGAAATCA
CTCTAACTTACTCATTGCTACTTACCAATCCACCAATCACCAGACCTTTTTGCTCCACACCCCAC
GAACTCTCTCCAAAACTTTAACCTTTATCTGAAACAGTTAACCGATTCATCAGAAGTTATAATCC
CTTGTAAATATAAATAATACCTAAAGTACTTACCACGAGTGACAGGATTACTTATTGTGAAAGGA
TAATTGGCCTAACCCCCTTGACTATGGAGATCACGCCCCTAGCAACATTCGGCAACCACAAAGTT
AAGTGACTGTCATTAAGGTGAAACAGTTACCA
Found at i:75094302 original size:43 final size:42
Alignment explanation
Indices: 75094225--75094341 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
75094215 ATGATTTATG
* *
75094225 TGTAAGACCATGTCT-AGGACATTGGCATCGTATTTGATTTCA
1 TGTAAGACCATGTCTGA-GACATTGGCATTGTATTTGATTACA
* * *
75094267 TGTAAGACCTTGTCTGAGACAGTGGCATTGATATTTGGTTACA
1 TGTAAGACCATGTCTGAGACATTGGCATTG-TATTTGATTACA
* *
75094310 TGTAAGACCACGTCTGGGACATTGGCATTGTA
1 TGTAAGACCATGTCTGAGACATTGGCATTGTA
75094342 CGAGCTTTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 27 0.42
43 37 0.58
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGAGACATTGGCATTGTATTTGATTACA
Found at i:75103547 original size:43 final size:42
Alignment explanation
Indices: 75103412--75103583 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 42
75103402 ACATAGAATC
* * * * * *
75103412 CGATATGTGTTTTCGTGTAAGACCGCGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTAGGAAG-TGGCAT
* * * *
75103455 CAAT-TTATGATTTACATGTAAGACCATGTCTGGGACAGCGGCAT
1 CGATATT-TGATTT-CATGTAAGACCACGTCTAGGA-AGTGGCAT
*
75103499 C-ATATTTGATTTCATGTAAGACCCCGTCTAGGATAGTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTAGGA-AGTGGCAT
* * *
75103541 CGATATTTGATTACATGTAAGACCTCGTCTAGGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTAGGAAG-TGGCAT
75103584 TGTACGAGCT
Statistics
Matches: 107, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
42 28 0.26
43 52 0.49
44 26 0.24
45 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (42 bp):
CGATATTTGATTTCATGTAAGACCACGTCTAGGAAGTGGCAT
Found at i:75107118 original size:28 final size:28
Alignment explanation
Indices: 75107050--75107231 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
75107040 CATGAGATTG
* * * * *
75107050 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
75107079 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75107107 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75107135 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
75107163 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75107191 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75107218 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
75107232 GACTTAATAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 17 0.12
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75115257 original size:28 final size:28
Alignment explanation
Indices: 75115189--75115370 Score: 267
Period size: 28 Copynumber: 6.5 Consensus size: 28
75115179 CATGAGATTG
* * * * *
75115189 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
75115218 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75115246 GCACTAAGTGTGCGAGTCTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75115274 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
75115302 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
75115330 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
75115357 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
75115371 GACTTAATAT
Statistics
Matches: 141, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
27 23 0.16
28 101 0.72
29 17 0.12
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:75115992 original size:29 final size:29
Alignment explanation
Indices: 75115950--75116007 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
75115940 TCTAGGAGAA
75115950 CATTTCGGCATGTATAGGCTAATATGTTT
1 CATTTCGGCATGTATAGGCTAATATGTTT
75115979 CATTTCGGCATGTATAGGCTAATATGTTT
1 CATTTCGGCATGTATAGGCTAATATGTTT
75116008 TGTTGAAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (29 bp):
CATTTCGGCATGTATAGGCTAATATGTTT
Found at i:75121148 original size:15 final size:16
Alignment explanation
Indices: 75121130--75121159 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75121120 AATTGTTTTA
75121130 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
75121145 TTACATAATTTCACT
1 TTACATAATTTCACT
75121160 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:75121479 original size:50 final size:49
Alignment explanation
Indices: 75121371--75121648 Score: 173
Period size: 50 Copynumber: 5.5 Consensus size: 49
75121361 CAGGTACGCA
* * * * * *
75121371 TAGTAGCCTACACTTAGTACTACACATGCGACCAACAATTTGGTACACG
1 TAGTAGCCTGCAATTAGTACTACACACGTGACCAACAATCTGATACACG
* * *
75121420 TAGTAGCCTGCAATTAGTACTACATACGTGACCTAACCATCTGATACATG
1 TAGTAGCCTGCAATTAGTACTACACACGTGACC-AACAATCTGATACACG
* ** *** * * * *
75121470 TAGTAGCCTGCATTTAGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCAATTAGTACTACACACGTGA-CCAA-CAATCTGATACACG
* * * ** * *
75121521 TAGTAGCTTGCACTTAGTACTACACATGCAACCTAACTATCT-AGTAAACG
1 TAGTAGCCTGCAATTAGTACTACACACGTGACC-AACAATCTGA-TACACG
* * * * * *
75121571 TAGTAGCCTGCACTTAGTACTATACACGTGACATACAACCATCTTAAACACA
1 TAGTAGCCTGCAATTAGTACTACACACGTGAC---CAACAATCTGATACACG
75121623 TAGTAGCCTGCACA-TAGTACTACACA
1 TAGTAGCCTGCA-ATTAGTACTACACA
75121649 TGTGTTATCA
Statistics
Matches: 173, Mismatches: 46, Indels: 17
0.73 0.19 0.07
Matches are distributed among these distances:
49 28 0.16
50 76 0.44
51 34 0.20
52 33 0.19
53 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCAATTAGTACTACACACGTGACCAACAATCTGATACACG
Found at i:75121544 original size:101 final size:101
Alignment explanation
Indices: 75121420--75121601 Score: 249
Period size: 101 Copynumber: 1.8 Consensus size: 101
75121410 TTGGTACACG
* ** * * *
75121420 TAGTAGCCTGCAATTAGTACTACATACGTGACCTAACCATCT-GATACATGTAGTAGCCTGCATT
1 TAGTAGCCTGCAATTAGTACTACACACGCAACCTAACCATCTAG-TAAACGTAGTAGCCTGCACT
75121484 TAGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
65 TAGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
* * * *
75121521 TAGTAGCTTGCACTTAGTACTACACATGCAACCTAACTATCTAGTAAACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCAATTAGTACTACACACGCAACCTAACCATCTAGTAAACGTAGTAGCCTGCACTT
*
75121586 AGTACTATACACGTGA
66 AGTACTACACACGTGA
75121602 CATACAACCA
Statistics
Matches: 69, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
101 68 0.99
102 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (101 bp):
TAGTAGCCTGCAATTAGTACTACACACGCAACCTAACCATCTAGTAAACGTAGTAGCCTGCACTT
AGTACTACACACGTGATTGAAGTTGTCGGGTACGCA
Found at i:75123831 original size:27 final size:27
Alignment explanation
Indices: 75123801--75123978 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
75123791 ATATTGAGCC
* *
75123801 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
75123828 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
75123855 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
75123883 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
75123910 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
75123937 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
75123964 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75123979 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:75123913 original size:55 final size:54
Alignment explanation
Indices: 75123801--75123978 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
75123791 ATATTGAGCC
* * * * *
75123801 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
75123855 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
75123910 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
75123964 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
75123979 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:75129957 original size:453 final size:453
Alignment explanation
Indices: 75129109--75129973 Score: 1444
Period size: 453 Copynumber: 1.9 Consensus size: 453
75129099 TCCCAGCTAC
75129109 CTTCAAACTCAAGAATGCAACAACGCAACATATCCTCAAGTATCTAAATAACTTGATCGAATTGA
1 CTTCAAACTCAAGAATGCAACAACGCAACATATCCTCAAGTATCTAAATAACTTGATCGAATTGA
*
75129174 CCATCCGTTTGCGGGTGAAATACAGTGCTAAAAAATGCAGCTTTGAACCCAAAGCTTCTTGCAAT
66 CCATCCATTTGCGGGTGAAATACAGTGCTAAAAAATGCAGCTTTGAACCCAAAGCTTCTTGCAAT
* * * *
75129239 ATCTTCCAAAATATCGAAGTAAATCTTGGGTCTCTATCCGAAACAATAGATAGGGGAACACCATG
131 ATCTTACAAAATATCAAAGTAAATCTTCGATCTCTATCCGAAACAATAGATAGGGGAACACCATG
* *
75129304 TAATCTCACAATTTCAGAAATATACCTAATTTATCTAGCGAGAAATCTATATGTACCAAAATGAA
196 TAATCTCACAATTTCAGAAATATACCTAATTTATCTAGCGAGAAATCCATACGTACCAAAATGAA
* *
75129369 ATGAGTTGATTTCGTCAATCTGCCAACAACAACCTAGATCACATCTTTCTTTTTCGGAGAAAAGG
261 ATGAGTTGATTTCGTCAATCTGCCAACAACAACCCAGATCACATCTTTCTTTTTCAGAGAAAAGG
* *
75129434 GTAAACCTAATACGAAATCCATTATTACTCTATCCCACTTCTACTTAGGAATCATAATAGGCTAT
326 GTAAACCTAATACGAAATCCATTATTACTCTATCCCACTTCCACTCAGGAATCATAATAGGCTAT
*
75129499 AATAAACCTGACGACATTTGATGCTTAGCTTTGACTTGCTAACAAATCAAACATTTCAAAACA
391 AATAAACCTGACGACACTTGATGCTTAGCTTTGACTTGCTAACAAATCAAACATTTCAAAACA
* * *
75129562 CTTCAAACTCAAGAATGCAACAACGCAACATATCCTCAAGTATCTGAATAACTTGTTCGGATTGA
1 CTTCAAACTCAAGAATGCAACAACGCAACATATCCTCAAGTATCTAAATAACTTGATCGAATTGA
* *
75129627 CCATTCATTTGCGGGTGAAATGCAGTGCTAAAAAATGCAGCTTTGAACCCAAAGCTTCTTGCAAT
66 CCATCCATTTGCGGGTGAAATACAGTGCTAAAAAATGCAGCTTTGAACCCAAAGCTTCTTGCAAT
* * * *
75129692 ATCTTATAAAATCTCAAAGTAAATCTTCGATCTTTATCCGAAATAATAGATAGGGGAACACCATG
131 ATCTTACAAAATATCAAAGTAAATCTTCGATCTCTATCCGAAACAATAGATAGGGGAACACCATG
*
75129757 TAATCTTACAATTTCAGAAATATACCTAATTTATCTAGCGAGAAATCCATACGTACCAAAATGAA
196 TAATCTCACAATTTCAGAAATATACCTAATTTATCTAGCGAGAAATCCATACGTACCAAAATGAA
* * * *
75129822 ATGAGTTGATTTCGTCAATCTGTCAACAACAACCCAGATCGCATCTTTCTTTTTTAGAGATAAGG
261 ATGAGTTGATTTCGTCAATCTGCCAACAACAACCCAGATCACATCTTTCTTTTTCAGAGAAAAGG
* *
75129887 GCT-AACCTAATACGAAATCCATTATTACTCTATCCCACTTCCACTCAGGAATCATAATCGGCTG
326 G-TAAACCTAATACGAAATCCATTATTACTCTATCCCACTTCCACTCAGGAATCATAATAGGCTA
* *
75129951 TAATAAACTTGACGGCACTTGAT
390 TAATAAACCTGACGACACTTGAT
75129974 AAATACTAAG
Statistics
Matches: 381, Mismatches: 30, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
453 380 1.00
454 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (453 bp):
CTTCAAACTCAAGAATGCAACAACGCAACATATCCTCAAGTATCTAAATAACTTGATCGAATTGA
CCATCCATTTGCGGGTGAAATACAGTGCTAAAAAATGCAGCTTTGAACCCAAAGCTTCTTGCAAT
ATCTTACAAAATATCAAAGTAAATCTTCGATCTCTATCCGAAACAATAGATAGGGGAACACCATG
TAATCTCACAATTTCAGAAATATACCTAATTTATCTAGCGAGAAATCCATACGTACCAAAATGAA
ATGAGTTGATTTCGTCAATCTGCCAACAACAACCCAGATCACATCTTTCTTTTTCAGAGAAAAGG
GTAAACCTAATACGAAATCCATTATTACTCTATCCCACTTCCACTCAGGAATCATAATAGGCTAT
AATAAACCTGACGACACTTGATGCTTAGCTTTGACTTGCTAACAAATCAAACATTTCAAAACA
Found at i:75131365 original size:16 final size:16
Alignment explanation
Indices: 75131344--75131376 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
75131334 TAACTGATCA
75131344 AACAAATCATCTAATC
1 AACAAATCATCTAATC
75131360 AACAAATCATCTAATC
1 AACAAATCATCTAATC
75131376 A
1 A
75131377 TGGCAAAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (16 bp):
AACAAATCATCTAATC
Found at i:75133464 original size:40 final size:40
Alignment explanation
Indices: 75133434--75133697 Score: 322
Period size: 40 Copynumber: 6.7 Consensus size: 40
75133424 GCTCCTCGTT
* * *
75133434 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
75133474 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
75133514 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
75133554 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
75133593 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75133632 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75133673 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75133698 CATCATTCAA
Statistics
Matches: 205, Mismatches: 14, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 72 0.35
40 118 0.58
41 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75141499 original size:80 final size:78
Alignment explanation
Indices: 75141395--75141655 Score: 309
Period size: 80 Copynumber: 3.3 Consensus size: 78
75141385 GCTCCTCGTT
* *
75141395 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTC-GGACTTAGCCCGG
75141460 ATTTAGTAACTCGCA
65 ATTTAGTAACT-GCA
* *
75141475 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGACTTAGCCCGG
* *
75141538 AATTAGTATCTGCA
65 ATTTAGTAACTGCA
* *
75141552 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGT-ATCTCGCACAAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAAT-TCGCACAAATGCCTTCGGA-CTTAGCCC
* * *
75141614 GGATATGGTCACTTAGCA
63 GGATTTAGTAAC-T-GCA
75141632 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
75141656 ACATCATTCA
Statistics
Matches: 157, Mismatches: 15, Indels: 18
0.83 0.08 0.09
Matches are distributed among these distances:
75 1 0.01
76 31 0.20
77 17 0.11
78 32 0.20
79 12 0.08
80 62 0.39
81 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGACTTAGCCCGGA
TTTAGTAACTGCA
Found at i:75141591 original size:116 final size:119
Alignment explanation
Indices: 75141395--75141656 Score: 322
Period size: 116 Copynumber: 2.2 Consensus size: 119
75141385 GCTCCTCGTT
* *
75141395 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCT-GCACAAATGCCTTCGGGACTTAACCC
* * *
75141458 GGATTTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
62 GGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA
*
75141515 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTGCACAAATGCCTTCGGGACTTAACCCGGA
* ** * *
75141577 ATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
65 ATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCA
75141632 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
75141657 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
115 3 0.02
116 54 0.43
117 29 0.23
118 25 0.20
119 3 0.02
120 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTGCACAAATGCCTTCGGGACTTAACCCGGAA
TTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCA
Found at i:75141656 original size:40 final size:40
Alignment explanation
Indices: 75141395--75141656 Score: 278
Period size: 40 Copynumber: 6.7 Consensus size: 40
75141385 GCTCCTCGTT
* * *
75141395 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
75141435 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
* *
75141475 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
75141515 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTA--TCTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACTTC-GCA
75141552 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
75141591 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
75141632 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75141657 CATCATTCAA
Statistics
Matches: 199, Mismatches: 11, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
36 2 0.01
37 15 0.08
38 36 0.18
39 16 0.08
40 115 0.58
41 14 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:75144800 original size:28 final size:28
Alignment explanation
Indices: 75144760--75144878 Score: 166
Period size: 28 Copynumber: 4.2 Consensus size: 28
75144750 ATCCGTACTT
* * * * *
75144760 ATTCATTTGGCCCTTTAGGCCTAATCTC
1 ATTCATATGGCCCATCAGGCCCAATCAC
*
75144788 ATTCATATGGCCCATCGGGCCCAATCAC
1 ATTCATATGGCCCATCAGGCCCAATCAC
75144816 ATTCATATGGCCCATCAGGCCCAATCAC
1 ATTCATATGGCCCATCAGGCCCAATCAC
* *
75144844 TTTCATATGGCCCGTCAGGCCCAATCAC
1 ATTCATATGGCCCATCAGGCCCAATCAC
75144872 ATTCATA
1 ATTCATA
75144879 GTCATGCAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 81 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.28
Consensus pattern (28 bp):
ATTCATATGGCCCATCAGGCCCAATCAC
Found at i:75145126 original size:16 final size:16
Alignment explanation
Indices: 75145092--75145127 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75145082 GTAGCCAAAC
*
75145092 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
*
75145108 TTTCGGCTTTTCAGTA
1 TTTCGGCTTTTCAGCA
75145124 TTTC
1 TTTC
75145128 AGGATTTGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.08, C:0.22, G:0.19, T:0.50
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:75145407 original size:21 final size:21
Alignment explanation
Indices: 75145383--75145422 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
75145373 AACTAAACAA
*
75145383 AAGTGACTCGAAAATCATCTT
1 AAGTCACTCGAAAATCATCTT
**
75145404 AAGTCACTCTCAAATCATC
1 AAGTCACTCGAAAATCATC
75145423 CATGACCATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (21 bp):
AAGTCACTCGAAAATCATCTT
Found at i:75148736 original size:47 final size:47
Alignment explanation
Indices: 75148678--75148978 Score: 521
Period size: 47 Copynumber: 6.4 Consensus size: 47
75148668 CAGCCAAGAC
75148678 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75148725 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75148772 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75148819 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75148866 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
75148913 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75148960 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
75148979 TCCCGAAGGG
Statistics
Matches: 242, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 242 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:75149250 original size:37 final size:37
Alignment explanation
Indices: 75149097--75149249 Score: 252
Period size: 37 Copynumber: 4.1 Consensus size: 37
75149087 CCGAGCTCTA
75149097 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
75149134 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
*
75149171 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * * *
75149208 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
75149245 AAGAC
1 AAGAC
75149250 TTCGTAATAA
Statistics
Matches: 109, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 109 1.00
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:75151163 original size:43 final size:43
Alignment explanation
Indices: 75151115--75151217 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
75151105 TTGGTTTTCA
75151115 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75151158 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
75151201 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
75151218 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:75151234 original size:29 final size:29
Alignment explanation
Indices: 75151199--75151272 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75151189 GTTGTGAGAT
* *
75151199 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
75151228 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
75151257 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
75151273 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:75151644 original size:40 final size:40
Alignment explanation
Indices: 75151587--75151769 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 40
75151577 TTGAATGATG
* * * *
75151587 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATA
*
75151627 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
75151667 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
*** * *
75151707 TCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
* * *
75151747 TTC-GAGCTAGGTCCCGAAGAGCA
1 TCCGGA-CTAAGTTCCGAAGAGCA
75151770 ATCATGCTGG
Statistics
Matches: 123, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.01
40 107 0.87
41 8 0.07
42 7 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:75151975 original size:25 final size:25
Alignment explanation
Indices: 75151946--75151996 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
75151936 ATGTAATAAC
75151946 GAATGAATAAAAGCACTATGTGTGT
1 GAATGAATAAAAGCACTATGTGTGT
* * * *
75151971 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGAATAAAAGCACTATGTGTGT
75151996 G
1 G
75151997 CGAATTCCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.29
Consensus pattern (25 bp):
GAATGAATAAAAGCACTATGTGTGT
Found at i:75155652 original size:47 final size:47
Alignment explanation
Indices: 75155594--75155894 Score: 512
Period size: 47 Copynumber: 6.4 Consensus size: 47
75155584 CAGCCAAGAC
75155594 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75155641 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75155688 AGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75155735 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
75155782 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
75155829 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75155876 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
75155895 TCCCGAAGGG
Statistics
Matches: 240, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 240 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:75156063 original size:37 final size:37
Alignment explanation
Indices: 75156013--75156165 Score: 270
Period size: 37 Copynumber: 4.1 Consensus size: 37
75156003 CCGAGCTCTA
75156013 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
75156050 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
75156087 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
75156124 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
75156161 AAGAC
1 AAGAC
75156166 TTCGTAATAA
Statistics
Matches: 112, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 112 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:75163243 original size:30 final size:29
Alignment explanation
Indices: 75163207--75163270 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
75163197 ATGAATCGGA
*
75163207 AGCTTTGGCACTAAGTGTACGATTTAAACT
1 AGCTTTGGCACTAAATGTACGATTT-AACT
*
75163237 AGCTTTGGCACTAAATGTGCGATTTAACT
1 AGCTTTGGCACTAAATGTACGATTTAACT
75163266 AGCTT
1 AGCTT
75163271 CGGTTACTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 9 0.28
30 23 0.72
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (29 bp):
AGCTTTGGCACTAAATGTACGATTTAACT
Found at i:75165094 original size:58 final size:58
Alignment explanation
Indices: 75165004--75165120 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
75164994 CTAAAAGCCT
75165004 TAGTATAATCATCTAAAATAGCCCACTAACTATCTACAGTATATC-AAATTAAACAAGC
1 TAGTATAATCATCTAAAATAGCCCACTAACTATCTACAGTATA-CGAAATTAAACAAGC
75165062 TAGTATAATCATCTAAAATAGCCCACTAACTATCTACAGTATACGAAATTAAACAAGC
1 TAGTATAATCATCTAAAATAGCCCACTAACTATCTACAGTATACGAAATTAAACAAGC
75165120 T
1 T
75165121 TAATAATAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
57 1 0.02
58 57 0.98
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (58 bp):
TAGTATAATCATCTAAAATAGCCCACTAACTATCTACAGTATACGAAATTAAACAAGC
Found at i:75166676 original size:28 final size:30
Alignment explanation
Indices: 75166629--75166696 Score: 81
Period size: 28 Copynumber: 2.4 Consensus size: 30
75166619 TGGCTCCTTT
* **
75166629 AGGCCCAA--ACATTTTCATATGGTCTGTC
1 AGGCCCAATCACATTTTCATATGGCCCATC
75166657 AGGCCCAATCACA-TTT-ATATGGCCCATC
1 AGGCCCAATCACATTTTCATATGGCCCATC
75166685 AGGCCCAATCAC
1 AGGCCCAATCAC
75166697 TTTCGGCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 29 0.83
29 3 0.09
30 3 0.09
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (30 bp):
AGGCCCAATCACATTTTCATATGGCCCATC
Found at i:75168014 original size:68 final size:68
Alignment explanation
Indices: 75167937--75168072 Score: 254
Period size: 68 Copynumber: 2.0 Consensus size: 68
75167927 GCTCAGGAAA
*
75167937 ATCTCAAATGAAATGATCTAGCGGACCACATTTGTAACAAGCTTCATTAGTTTTATTCCAGCATT
1 ATCTCAAATGAAATGATCTAGCGAACCACATTTGTAACAAGCTTCATTAGTTTTATTCCAGCATT
75168002 CTC
66 CTC
*
75168005 ATCTCAAATGAAATGATCTAGCGAACCACATTTGTAACAAGCTTCATTAGTTTTATTCTAGCATT
1 ATCTCAAATGAAATGATCTAGCGAACCACATTTGTAACAAGCTTCATTAGTTTTATTCCAGCATT
75168070 CTC
66 CTC
75168073 CAAACTGTCA
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 66 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (68 bp):
ATCTCAAATGAAATGATCTAGCGAACCACATTTGTAACAAGCTTCATTAGTTTTATTCCAGCATT
CTC
Found at i:75174126 original size:29 final size:29
Alignment explanation
Indices: 75174092--75174165 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
75174082 TAATCAACCA
*
75174092 CGCACACTTAGTGCCATGTACTTTAAACT-
1 CGCACACTTAGTGCCATGCA-TTTAAACTC
* *
75174121 CGCACACTTAGTGCCATGCATTTCAAGTC
1 CGCACACTTAGTGCCATGCATTTAAACTC
75174150 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
75174166 ATCTTACAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.15
29 35 0.85
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTAAACTC
Found at i:75182398 original size:29 final size:29
Alignment explanation
Indices: 75182359--75182437 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
75182349 CTTAATAATC
*
75182359 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
75182389 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
75182418 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75182438 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:75186998 original size:40 final size:40
Alignment explanation
Indices: 75186961--75187185 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
75186951 GCTACTCGTT
* *
75186961 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
75187001 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
75187041 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
75187080 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
75187120 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
75187161 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
75187186 CATCATTCAA
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 37 0.23
40 111 0.69
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:75187072 original size:79 final size:78
Alignment explanation
Indices: 75186961--75187185 Score: 290
Period size: 79 Copynumber: 2.8 Consensus size: 78
75186951 GCTACTCGTT
* *
75186961 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAACCCGG
75187026 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
75187041 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGAGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGG
75187105 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * * * * *
75187120 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
75187185 A
64 A
75187186 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 69 0.54
80 51 0.40
81 6 0.05
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:75187145 original size:119 final size:120
Alignment explanation
Indices: 75186961--75187185 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
75186951 GCTACTCGTT
* * *
75186961 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGAGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
75187026 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
75187080 CAAATGCCTTCGAGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGAGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
75187143 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
75187186 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 3 0.03
119 68 0.74
120 21 0.23
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGAGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:75194786 original size:79 final size:77
Alignment explanation
Indices: 75194684--75194908 Score: 270
Period size: 79 Copynumber: 2.8 Consensus size: 77
75194674 GCTACTGATT
*
75194684 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCACACAA-TGCCTTCGGGACTTAACCCGG
*
75194749 ATTTAGTAACTTGCA
63 ATTTAGTAACTCGCA
* * *
75194764 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGGA
75194829 TTTAGTAACTCGCA
64 TTTAGTAACTCGCA
* * * * * * *
75194843 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAACTCA-CACAATGCCTTCGGGACTTAACCCGG
75194908 A
63 A
75194909 CATCATTCAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 68 0.54
80 52 0.42
81 4 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCACACAATGCCTTCGGGACTTAACCCGGATT
TAGTAACTCGCA
Found at i:75194868 original size:119 final size:120
Alignment explanation
Indices: 75194684--75194908 Score: 314
Period size: 119 Copynumber: 1.9 Consensus size: 120
75194674 GCTACTGATT
* *
75194684 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
*
75194749 ATTTAGTAACTT-GCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
75194803 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCC
* *
75194866 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
75194909 CATCATTCAA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
118 3 0.03
119 70 0.75
120 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:75194908 original size:40 final size:41
Alignment explanation
Indices: 75194684--75194908 Score: 250
Period size: 40 Copynumber: 5.6 Consensus size: 41
75194674 GCTACTGATT
* * *
75194684 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
75194724 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* *
75194764 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* * *
75194803 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
75194843 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
75194884 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75194909 CATCATTCAA
Statistics
Matches: 157, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 1 0.01
39 36 0.23
40 109 0.69
41 11 0.07
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:75197446 original size:46 final size:46
Alignment explanation
Indices: 75197396--75197568 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
75197386 TGGTTGAGCA
75197396 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
75197442 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75197487 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
75197535 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
75197569 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75197552 original size:93 final size:93
Alignment explanation
Indices: 75197393--75197563 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
75197383 GGATGGTTGA
* *
75197393 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
75197458 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
75197486 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
75197551 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
75197564 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:75202802 original size:30 final size:30
Alignment explanation
Indices: 75202768--75202828 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
75202758 TCCTTGACTC
75202768 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
75202798 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
75202828 A
1 A
75202829 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:75207201 original size:86 final size:86
Alignment explanation
Indices: 75207061--75207218 Score: 253
Period size: 86 Copynumber: 1.8 Consensus size: 86
75207051 GAAGCATTTG
**
75207061 TTAATCCAAATGGCATAAAAAGAAATTCATAATGCCAATAACTTGTCCTAAACATGGTGTAACAC
1 TTAATCCAAATGGCATAAAAAGAAATTCATAATGCCAATAACTCATCCTAAACATGGTGTAACAC
75207126 CCCTAACTGCAGGAGTGTTTA
66 CCCTAACTGCAGGAGTGTTTA
* * * *
75207147 TTAATCCAAATGGCATAAAAAGAAATTTATAATGCCCATACCTCATCCTGAACATGGTGTAACAC
1 TTAATCCAAATGGCATAAAAAGAAATTCATAATGCCAATAACTCATCCTAAACATGGTGTAACAC
*
75207212 CCTTAAC
66 CCCTAAC
75207219 CCGTATCTGT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
86 65 1.00
ACGTcount: A:0.39, C:0.22, G:0.13, T:0.27
Consensus pattern (86 bp):
TTAATCCAAATGGCATAAAAAGAAATTCATAATGCCAATAACTCATCCTAAACATGGTGTAACAC
CCCTAACTGCAGGAGTGTTTA
Found at i:75208988 original size:47 final size:44
Alignment explanation
Indices: 75208919--75209034 Score: 144
Period size: 44 Copynumber: 2.6 Consensus size: 44
75208909 GAGTGCCAAA
75208919 GTAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGAT-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATCGG-CT--A-AGAGATCAGCCAGT
* * * *
75208966 GTAAGACGTGTCTGGGACATGCATCGGCTAAGAGTTCTGCTAGT
1 GTAAGACATGTCTGGGACATGCATCGGCTAAGAGATCAGCCAGT
*
75209010 GTAAGACATGTTTGGGACATGCATC
1 GTAAGACATGTCTGGGACATGCATC
75209035 AGCACGCATA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
43 5 0.08
44 29 0.47
46 2 0.03
47 26 0.42
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
GTAAGACATGTCTGGGACATGCATCGGCTAAGAGATCAGCCAGT
Found at i:75209026 original size:44 final size:46
Alignment explanation
Indices: 75208825--75209079 Score: 164
Period size: 47 Copynumber: 5.4 Consensus size: 46
75208815 TGTGCTAGTA
* * ** *
75208825 TAAGACCATGTCTGGGACATGGCTTCTGGCATC-CAGACGAGGGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATC-GGCCTCACAGA-GATAGCCAGTG
* * * **
75208874 TAAGACATGTCTGGGACATGCTTCAGCCAT-ATTATGAG-T-GCCAAAG
1 TAAGACATGTCTGGGACATGCATCGGCC-TCA-CA-GAGATAGCCAGTG
75208920 TAAGACATGTCTGGGACATGCATCGGCCTCGACAGAGATAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCTC-ACAGAGATAGCCAGTG
* * * *
75208967 TAAGACGTGTCTGGGACATGCATCGG-CT-A-AGAGTTCTGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGGCCTCACAGAGAT-AGCCAGTG
* * * * * * *
75209011 TAAGACATGTTTGGGACATGCATCAGCACGCATATATGAGAGCCAGTA
1 TAAGACATGTCTGGGACATGCATCGGC-CTCACAGA-GATAGCCAGTG
75209059 TAAGACTATGTCTGGGACATG
1 TAAGAC-ATGTCTGGGACATG
75209080 GCATTGGGTA
Statistics
Matches: 164, Mismatches: 27, Indels: 30
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.03
44 30 0.18
45 4 0.02
46 37 0.23
47 38 0.23
48 29 0.18
49 21 0.13
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCGGCCTCACAGAGATAGCCAGTG
Found at i:75211946 original size:48 final size:48
Alignment explanation
Indices: 75211886--75212063 Score: 268
Period size: 48 Copynumber: 3.7 Consensus size: 48
75211876 ATGTGTAATC
* *
75211886 GTGTAAAACCATGTCTGGGACATGGCATCGACATTGTTATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGACATTGTTATGTGAGCCA
* *
75211934 GTGTAAGACCATGTCTAGGACATGACATCGACATTGTTATGTGAGCTA
1 GTGTAAGACCATGTCTAGGACATGGCATCGACATTGTTATGTGAGCCA
* * *
75211982 GTCTAAGACCATGTCTGGGACATGGCATC-AGCATCGTTATGTGAGCCA
1 GTGTAAGACCATGTCTAGGACATGGCATCGA-CATTGTTATGTGAGCCA
*
75212030 GTGTAAGACCATGTCTAAGACATGGCATCGACAT
1 GTGTAAGACCATGTCTAGGACATGGCATCGACAT
75212064 GAGGCATCTT
Statistics
Matches: 116, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 1 0.01
48 114 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTAGGACATGGCATCGACATTGTTATGTGAGCCA
Found at i:75221111 original size:48 final size:48
Alignment explanation
Indices: 75221055--75221516 Score: 782
Period size: 48 Copynumber: 9.6 Consensus size: 48
75221045 AGATAAATAT
*
75221055 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75221103 ATATGTATATGCGGTAAAGCCGAATTGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75221151 ATATGTATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
** *
75221199 ATATGTATATGTGGTAAAGCCGAATGGCTAGCGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
75221247 ATATGTATATGCGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75221295 ATATGCATATGAGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75221343 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAACTATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
* *
75221391 ATATGTATACGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
75221439 ATATGTATATGTGGTAAAGCCGAATGGCTAAT-TCGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGT-GAAATATGTATGAG
75221487 ATATGTATATGTGGTAAAGCCGAATGGCTA
1 ATATGTATATGTGGTAAAGCCGAATGGCTA
75221517 GTGATTCGGC
Statistics
Matches: 390, Mismatches: 23, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
47 1 0.00
48 389 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:75221742 original size:37 final size:37
Alignment explanation
Indices: 75221692--75221791 Score: 173
Period size: 37 Copynumber: 2.7 Consensus size: 37
75221682 AATATATTCT
75221692 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
* *
75221729 GGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCT
1 GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
*
75221766 GGGTAAGACCCGATAACTACGTGTGG
1 GGGTAAGACCCGATGACTACGTGTGG
75221792 GGACTATTTG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.25
Consensus pattern (37 bp):
GGGTAAGACCCGATGACTACGTGTGGAGATTATGTCC
Found at i:75240935 original size:39 final size:39
Alignment explanation
Indices: 75240878--75240963 Score: 118
Period size: 39 Copynumber: 2.2 Consensus size: 39
75240868 CGATATTTGG
* *
75240878 AACATATCCAGACATGAGGTCCGCAGGCTACGTGCTGGA
1 AACATATCCAGACATGAGGTCCACAGGCTACGTGCTAGA
* * *
75240917 AACATATCCGGACCTGAGGTCTACAGGCTACGTGCTAGA
1 AACATATCCAGACATGAGGTCCACAGGCTACGTGCTAGA
*
75240956 AATATATC
1 AACATATC
75240964 TGGGCCTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (39 bp):
AACATATCCAGACATGAGGTCCACAGGCTACGTGCTAGA
Found at i:75243246 original size:21 final size:21
Alignment explanation
Indices: 75243220--75243272 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
75243210 TAAAATTCGA
*
75243220 GATAGATTGAAGACAACTTTC
1 GATAGATAGAAGACAACTTTC
75243241 GATAGATAGAAGACAACTTTC
1 GATAGATAGAAGACAACTTTC
75243262 GATAGATAGAA
1 GATAGATAGAA
75243273 ATCATATGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.43, C:0.11, G:0.21, T:0.25
Consensus pattern (21 bp):
GATAGATAGAAGACAACTTTC
Found at i:75244103 original size:28 final size:28
Alignment explanation
Indices: 75244047--75244103 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
75244037 CATCATAACT
* *
75244047 TATAATAGTTTAATATATATAAGTTATA
1 TATAATAGTTTAATATAAATAAATTATA
75244075 TATAAT-GTTTAATA-AAATGAAATTA-A
1 TATAATAGTTTAATATAAAT-AAATTATA
75244101 TAT
1 TAT
75244104 GTATTATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 7 0.27
27 13 0.50
28 6 0.23
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (28 bp):
TATAATAGTTTAATATAAATAAATTATA
Found at i:75244900 original size:44 final size:43
Alignment explanation
Indices: 75244834--75244918 Score: 152
Period size: 44 Copynumber: 2.0 Consensus size: 43
75244824 TGTAATTTGA
75244834 TTTAATGCATATGGTAAGTGTTTGAGGTGAGTATTTGACATTGT
1 TTTAATGCATATGGTAAGTGTTTGAGG-GAGTATTTGACATTGT
*
75244878 TTTAATGCATATGGTAATTGTTTGAGGGAGTATTTGACATT
1 TTTAATGCATATGGTAAGTGTTTGAGGGAGTATTTGACATT
75244919 TTTATACTTG
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 14 0.35
44 26 0.65
ACGTcount: A:0.26, C:0.05, G:0.26, T:0.44
Consensus pattern (43 bp):
TTTAATGCATATGGTAAGTGTTTGAGGGAGTATTTGACATTGT
Found at i:75251553 original size:12 final size:12
Alignment explanation
Indices: 75251531--75251562 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
75251521 TAGAATTTAC
75251531 TAAAA-TAAAAA
1 TAAAAGTAAAAA
75251542 TAAAAGTAAAAA
1 TAAAAGTAAAAA
75251554 TAAAAGTAA
1 TAAAAGTAA
75251563 TTTTAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (12 bp):
TAAAAGTAAAAA
Found at i:75253653 original size:55 final size:55
Alignment explanation
Indices: 75253593--75253717 Score: 124
Period size: 55 Copynumber: 2.3 Consensus size: 55
75253583 GTTAATTTAA
* * * * *
75253593 CAGGTTCGACCACGGGTGTTTCACACGGGCGTGTCGAACGCTCGTGTTGTTTTGG
1 CAGGTTCGACCACGGGTCTTCCACACGGGCGTGTCGAACACCCATGTTGTTTTGG
*** ** * *
75253648 CAGGTTATCCCATAGTTCTTCCACACGGGCGTGTCGCACACCCATGTTGTTTTGG
1 CAGGTTCGACCACGGGTCTTCCACACGGGCGTGTCGAACACCCATGTTGTTTTGG
* *
75253703 TAGGCTCGACCACGG
1 CAGGTTCGACCACGG
75253718 CCATATCGCA
Statistics
Matches: 51, Mismatches: 19, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (55 bp):
CAGGTTCGACCACGGGTCTTCCACACGGGCGTGTCGAACACCCATGTTGTTTTGG
Found at i:75256521 original size:19 final size:19
Alignment explanation
Indices: 75256493--75256531 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
75256483 AGAGTGAAAG
75256493 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
75256511 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
75256531 A
1 A
75256532 GTACAAGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.51, C:0.18, G:0.28, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:75264594 original size:20 final size:21
Alignment explanation
Indices: 75264550--75264594 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
75264540 AGCGAAAGGA
75264550 ACGAG-AAACGGGCCAAAAAT
1 ACGAGAAAACGGGCCAAAAAT
* *
75264570 A-GAGAAAATGGGCC-AAAGT
1 ACGAGAAAACGGGCCAAAAAT
75264589 ACGAGA
1 ACGAGA
75264595 TCAACATAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.49, C:0.16, G:0.29, T:0.07
Consensus pattern (21 bp):
ACGAGAAAACGGGCCAAAAAT
Found at i:75269893 original size:17 final size:18
Alignment explanation
Indices: 75269873--75269906 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
75269863 CTAGATGAAT
*
75269873 AGAAGACAC-ATAAACCG
1 AGAACACACGATAAACCG
75269890 AGAACACACGATAAACC
1 AGAACACACGATAAACC
75269907 AAAACTACGC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.26, G:0.15, T:0.06
Consensus pattern (18 bp):
AGAACACACGATAAACCG
Found at i:75271568 original size:37 final size:37
Alignment explanation
Indices: 75271518--75271596 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75271508 TTATTACGAA
* * *
75271518 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
75271555 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
75271592 GTCTT
1 GTCTT
75271597 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:75271793 original size:47 final size:47
Alignment explanation
Indices: 75271715--75272004 Score: 427
Period size: 47 Copynumber: 6.1 Consensus size: 47
75271705 CCCTTCGGGA
* * * * * *
75271715 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75271762 CCTGTCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
75271809 CCTATCACATATATATACACTTTCACATTCATCTCATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75271858 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75271905 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
75271954 CTTATCACATATATACACTTTCACGTTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
75272001 CTTA
1 CTTA
75272005 CTATCATTTC
Statistics
Matches: 222, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
47 132 0.59
49 90 0.41
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75272002 original size:96 final size:96
Alignment explanation
Indices: 75271715--75272004 Score: 449
Period size: 96 Copynumber: 3.0 Consensus size: 96
75271705 CCCTTCGGGA
* * * * * * * *
75271715 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75271778 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
75271809 CCTATCACATATATATACACTTTCACATTCATCTCATCGGCCATTAGGCCTTATCTCATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
75271874 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
75271905 CTTATCACGTATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
75271970 ACTTTCACGTTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
75272001 CTTA
1 CTTA
75272005 CTATCATTTC
Statistics
Matches: 178, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
94 9 0.05
95 1 0.01
96 168 0.94
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:75274912 original size:112 final size:112
Alignment explanation
Indices: 75274774--75274990 Score: 380
Period size: 112 Copynumber: 1.9 Consensus size: 112
75274764 GTGCGACACG
* * * *
75274774 CCCGTGCCAAATAATCGTGGGTGAACCTGCCAAAACAACATGGGTGTGGACTTTCATATACAGGT
1 CCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACACAGGT
*
75274839 GTGGCAGAAGTGAACAAAGACAGACACGGTCGTGCGACACGGCCACT
66 GTGGCAGAAGTGAACAAAGACAGACACAGTCGTGCGACACGGCCACT
*
75274886 CCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTTTGGACTTTCATACACAGGT
1 CCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACACAGGT
75274951 GTGGCAGAAGTGAACAAAGACAGACACAGTCGTGCGACAC
66 GTGGCAGAAGTGAACAAAGACAGACACAGTCGTGCGACAC
75274991 AGCCGTGTGC
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
112 99 1.00
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (112 bp):
CCCGTGCCAAACAACCGTGGGCGAACCTGCCAAAACAACATGGGTGTGGACTTTCATACACAGGT
GTGGCAGAAGTGAACAAAGACAGACACAGTCGTGCGACACGGCCACT
Found at i:75295368 original size:80 final size:80
Alignment explanation
Indices: 75295231--75295493 Score: 309
Period size: 80 Copynumber: 3.3 Consensus size: 80
75295221 TTGAATGCTG
* * * * *
75295231 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
**
75295293 TTTGTGCGACATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
75295311 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
75295376 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * * *
75295391 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
75295455 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
*
75295470 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75295494 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 22, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.23
80 114 0.72
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:75295481 original size:39 final size:40
Alignment explanation
Indices: 75295307--75295493 Score: 304
Period size: 40 Copynumber: 4.7 Consensus size: 40
75295297 TGCGACATAC
75295307 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
75295347 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
*
75295387 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* * **
75295427 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTAC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* *
75295466 TAAATCCGGGCTATGTCCCGAAGGCATT
1 TAAATCCGGGTTAAGTCCCGAAGGCATT
75295494 TGAACGAGGA
Statistics
Matches: 140, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
Found at i:75301393 original size:80 final size:80
Alignment explanation
Indices: 75301295--75301557 Score: 248
Period size: 80 Copynumber: 3.3 Consensus size: 80
75301285 TTGAATGCTG
* * * *
75301295 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGAATTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-AAGTTG-ATAAATCCGAATTAAG-TCCCGAAGGCA
*
75301357 TTTGTGCGACATACTAAA
63 TTCGTGCGACATACTAAA
* * **
75301375 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGATAAATCCGAATTAAGTCCCGAAGGCATTC
** **
75301440 GTGCGAGTTGTTAAA
66 GTGCGACATACTAAA
* ** *
75301455 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAA-TTGTTAAATCCGGGTTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-AAGTTGATAAATCCGAATTAAGTCCCGAAGGCATT
* **
75301519 -GTGTGAGTTACTAAA
65 CGTGCGACATACTAAA
* * *
75301534 TCCAGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
75301558 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
79 34 0.22
80 115 0.73
81 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCAAGTTGATAAATCCGAATTAAGTCCCGAAGGCATTC
GTGCGACATACTAAA
Found at i:75301545 original size:39 final size:40
Alignment explanation
Indices: 75301371--75301557 Score: 295
Period size: 40 Copynumber: 4.7 Consensus size: 40
75301361 TGCGACATAC
75301371 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
75301411 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
*
75301451 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAATTGT
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* * **
75301491 TAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTAC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
* * *
75301530 TAAATCCAGGCTATGTCCCGAAGGCATT
1 TAAATCCGGGTTAAGTCCCGAAGGCATT
75301558 TGAACGAGGA
Statistics
Matches: 139, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 33 0.24
40 106 0.76
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGT
Found at i:75313490 original size:46 final size:48
Alignment explanation
Indices: 75313423--75313545 Score: 142
Period size: 50 Copynumber: 2.6 Consensus size: 48
75313413 GGACAGGACA
* * *
75313423 AGACAGAAATGAGCCATGTAAGTCCATA-T-CATATATATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTAG
* *
75313469 AGACAGGAATGAGCCATGTAAGACCATATTAGATATATATATGGCATTAG
1 AGACAGGAATGAGCCATGTAAGTCCATATT--ACATATATATGGCATTAG
* **
75313519 AGACAGGAATAATTCATGTAAGTCCAT
1 AGACAGGAATGAGCCATGTAAGTCCAT
75313546 GTCGAAGACA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 26 0.41
47 1 0.02
50 37 0.58
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (48 bp):
AGACAGGAATGAGCCATGTAAGTCCATATTACATATATATGGCATTAG
Found at i:75313528 original size:50 final size:46
Alignment explanation
Indices: 75313423--75313528 Score: 131
Period size: 46 Copynumber: 2.2 Consensus size: 46
75313413 GGACAGGACA
* * * *
75313423 AGACAGAAATGAGCCATGTAAGTCCATATCATATATATGGCTTTGG
1 AGACAGGAATGAGCCATGTAAGACCATATCATATATATGGCATTAG
*
75313469 AGACAGGAATGAGCCATGTAAGACCATATTAGATATATATATGGCATTAG
1 AGACAGGAATGAGCCATGTAAGACCATA-T---CATATATATGGCATTAG
75313519 AGACAGGAAT
1 AGACAGGAAT
75313529 AATTCATGTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
46 26 0.51
47 1 0.02
50 24 0.47
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.25
Consensus pattern (46 bp):
AGACAGGAATGAGCCATGTAAGACCATATCATATATATGGCATTAG
Found at i:75320309 original size:51 final size:51
Alignment explanation
Indices: 75320168--75320309 Score: 189
Period size: 50 Copynumber: 2.8 Consensus size: 51
75320158 TGTAGACAAG
*
75320168 GTTATCTA-GTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 GTTATC-AGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
** * * * * *
75320219 -CCATCTGCTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
75320269 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACA
75320310 TGCGACCTCA
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
50 41 0.55
51 34 0.45
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (51 bp):
GTTATCAGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCGAA
Found at i:75320596 original size:27 final size:27
Alignment explanation
Indices: 75320563--75320616 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
75320553 TCATACAACC
* *
75320563 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
75320590 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
75320617 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:75324622 original size:56 final size:56
Alignment explanation
Indices: 75324560--75324772 Score: 284
Period size: 56 Copynumber: 3.8 Consensus size: 56
75324550 TCCCAGACAG
* *
75324560 GGTCTTACTCATAAACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
* * * * *
75324616 GATCTTACTCGCACACACATATAGGAATCACATATCGATGCCAATGTATTAAATGT
1 GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
* * *
75324672 GGTCTTACTCACACACACATATC-AGAATCACATATTGATGCCAACATATTAAACGT
1 GGTCTTACTCACACACACATATCGA-AATCACATATCGATGCCAACGTATTAAATGT
** * *
75324728 GGTCTTACTCGTACACACATATCGGAATCACATATCAATGCCAAC
1 GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAAC
75324773 TCAAAAATGT
Statistics
Matches: 135, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
56 135 1.00
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCACACACACATATCGAAATCACATATCGATGCCAACGTATTAAATGT
Found at i:75324734 original size:112 final size:112
Alignment explanation
Indices: 75324560--75324771 Score: 327
Period size: 112 Copynumber: 1.9 Consensus size: 112
75324550 TCCCAGACAG
* * *
75324560 GGTCTTACTCATAAACACATATCGAAATCACATATCGATGCCAACGTATTAAATGTGATCTTACT
1 GGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACATATTAAACGTGATCTTACT
*
75324625 CGCACACACATATAGGAATCACATATCGATGCCAATGTATTAAATGT
66 CGCACACACATATAGGAATCACATATCAATGCCAATGTATTAAATGT
* * *
75324672 GGTCTTACTCACACACACATATC-AGAATCACATATTGATGCCAACATATTAAACGTGGTCTTAC
1 GGTCTTACTCACAAACACATATCGA-AATCACATATCGATGCCAACATATTAAACGTGATCTTAC
* *
75324736 TCGTACACACATATCGGAATCACATATCAATGCCAA
65 TCGCACACACATATAGGAATCACATATCAATGCCAA
75324772 CTCAAAAATG
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
111 1 0.01
112 89 0.99
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (112 bp):
GGTCTTACTCACAAACACATATCGAAATCACATATCGATGCCAACATATTAAACGTGATCTTACT
CGCACACACATATAGGAATCACATATCAATGCCAATGTATTAAATGT
Found at i:75331361 original size:43 final size:43
Alignment explanation
Indices: 75331293--75331410 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 43
75331283 ATAAAACTCG
* * * *
75331293 TACAATGCC-ATATCCCGGATATGGTCTTACATGTTATCAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
* * * *
75331334 TATCGATGCCACTGTCCCAGACATGGTCTTACACGTAATCTCAA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
*
75331378 TACAATGCCAATGTCCTAGACATGGTCTTACAT
1 TACAATGCCAATGTCCCAGACATGGTCTTACAT
75331411 TATTGAGATG
Statistics
Matches: 62, Mismatches: 12, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
41 2 0.03
42 6 0.10
43 51 0.82
44 3 0.05
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
Found at i:75342527 original size:20 final size:20
Alignment explanation
Indices: 75342502--75342548 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
75342492 TGAAGGGCAT
75342502 GGGCGTGCCCCAAGATACAC
1 GGGCGTGCCCCAAGATACAC
75342522 GGGCGTGCCCCAAGATACAC
1 GGGCGTGCCCCAAGATACAC
75342542 GGGCGTG
1 GGGCGTG
75342549 TGAGTCCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.32, G:0.36, T:0.11
Consensus pattern (20 bp):
GGGCGTGCCCCAAGATACAC
Found at i:75347586 original size:15 final size:17
Alignment explanation
Indices: 75347555--75347587 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
75347545 CACCATAGCT
75347555 GAAACATAAACAAGAAA
1 GAAACATAAACAAGAAA
75347572 GAAA-ATAAA-AAGAAA
1 GAAACATAAACAAGAAA
75347587 G
1 G
75347588 CTAGGGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 5 0.31
17 4 0.25
ACGTcount: A:0.73, C:0.06, G:0.15, T:0.06
Consensus pattern (17 bp):
GAAACATAAACAAGAAA
Found at i:75358518 original size:43 final size:43
Alignment explanation
Indices: 75358491--75358606 Score: 146
Period size: 43 Copynumber: 2.7 Consensus size: 43
75358481 TATCACATAT
*
75358491 CGATGCCATTGTTCCAGACAAGGTCTTACACGAAATCAATTAA
1 CGATGCCAATGTTCCAGACAAGGTCTTACACGAAATCAATTAA
* *
75358534 CGATGCCAATGTTCCAGACATGGTCTTACACGTAATCTCAA-T-A
1 CGATGCCAATGTTCCAGACAAGGTCTTACACG-AA-ATCAATTAA
* * *
75358577 CAATGCCAATGTTCCAGACATGGTATTACA
1 CGATGCCAATGTTCCAGACAAGGTCTTACA
75358607 TGTAAACACA
Statistics
Matches: 66, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
43 59 0.89
44 3 0.05
45 4 0.06
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
CGATGCCAATGTTCCAGACAAGGTCTTACACGAAATCAATTAA
Found at i:75361344 original size:40 final size:40
Alignment explanation
Indices: 75361192--75361330 Score: 199
Period size: 40 Copynumber: 3.5 Consensus size: 40
75361182 GATATAGCTC
* * *
75361192 CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTATAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAACCCGGATT-TAGTAA
* *
75361232 TTCGGACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
* *
75361272 CTCGCACAAATGCCTTCAGGACTTAACCCGGATTTAGTAA
1 CTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
75361312 CTCGTACAAATGCCTTCGG
1 CTCGTACAAATGCCTTCGG
75361331 ATCTTAGTCC
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 86 0.98
41 2 0.02
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CTCGTACAAATGCCTTCGGGACTTAACCCGGATTTAGTAA
Done.