Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 235 of 295
Found at i:75369264 original size:34 final size:38
Alignment explanation
Indices: 75369125--75369329 Score: 273
Period size: 39 Copynumber: 5.5 Consensus size: 38
75369115 GCTCCTCGTT
* * * *
75369125 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGAT-TAGTAACTCGCA
75369165 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGA-TTAGTAACTCGCA
75369204 CAAATGCCTTCGGGACTTAACCCGGATTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAACCCGGATTAGTAACTCGCA
75369243 CAAATG-CTTCGG-C-TAA-CCGGATTAGTAACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTAGTAACTCGCA
75369277 CAAATGCCTT-GG-CTT-ACCCGGATTAGT-ACTCGCA
1 CAAATGCCTTCGGACTTAACCCGGATTAGTAACTCGCA
75369311 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGGA-CTTA
75369330 GTCCGGATAT
Statistics
Matches: 152, Mismatches: 4, Indels: 20
0.86 0.02 0.11
Matches are distributed among these distances:
34 45 0.30
35 19 0.12
36 1 0.01
37 5 0.03
38 4 0.03
39 52 0.34
40 26 0.17
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (38 bp):
CAAATGCCTTCGGACTTAACCCGGATTAGTAACTCGCA
Found at i:75391176 original size:30 final size:29
Alignment explanation
Indices: 75391133--75391196 Score: 92
Period size: 30 Copynumber: 2.2 Consensus size: 29
75391123 CAAGTAGCCG
* *
75391133 AAGCTAGTTAAATCGCACACTTAGTGCTA
1 AAGCTAGTTAAATCACACACTTAGTGCCA
*
75391162 AAGCTAGTTTAAATCACACATTTAGTGCCA
1 AAGCTAG-TTAAATCACACACTTAGTGCCA
75391192 AAGCT
1 AAGCT
75391197 TCCGAATCAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (29 bp):
AAGCTAGTTAAATCACACACTTAGTGCCA
Found at i:75398829 original size:27 final size:27
Alignment explanation
Indices: 75398799--75398942 Score: 180
Period size: 27 Copynumber: 5.3 Consensus size: 27
75398789 TATTGAAATG
* *
75398799 CCCTCGATTTGTAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTATCATTTTA
* *
75398826 CCCTCGATTTATAGAATTATCGTTTCA
1 CCCTCGATTTATAGAATTATCATTTTA
* ** *
75398853 CCCTCAATTTGCAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTATCATTTTA
*
75398880 CCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTATCATTTTA
* * *
75398907 CCCTCGATTTACAAAATTATTATTTTA
1 CCCTCGATTTATAGAATTATCATTTTA
75398934 CCCTCGATT
1 CCCTCGATT
75398943 GTGAAATTAC
Statistics
Matches: 100, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.27, C:0.23, G:0.09, T:0.41
Consensus pattern (27 bp):
CCCTCGATTTATAGAATTATCATTTTA
Found at i:75398989 original size:27 final size:27
Alignment explanation
Indices: 75398959--75399073 Score: 90
Period size: 27 Copynumber: 4.3 Consensus size: 27
75398949 TTACTGAAAC
*
75398959 ACCCCT-GTAGGATAGAATTACCAAAAT
1 ACCCCTAGTAGG-TAAAATTACCAAAAT
**
75398986 ACCCCTAGTTTGTAAAATTACCAAAAT
1 ACCCCTAGTAGGTAAAATTACCAAAAT
* * ** * *
75399013 ACCACTGGTTTGTGAAATTACCGAAAT
1 ACCCCTAGTAGGTAAAATTACCAAAAT
* **
75399040 A-CCCTCAATTTGTAAAATTACCAAAAT
1 ACCCCT-AGTAGGTAAAATTACCAAAAT
75399067 ACCCCTA
1 ACCCCTA
75399074 ATTTACAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
26 3 0.04
27 63 0.86
28 7 0.10
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.27
Consensus pattern (27 bp):
ACCCCTAGTAGGTAAAATTACCAAAAT
Found at i:75399076 original size:27 final size:27
Alignment explanation
Indices: 75398974--75399097 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
75398964 TGTAGGATAG
*
75398974 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
75399001 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
75399028 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
**
75399055 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAATTTGTAA
75399082 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
75399098 TTGACTCTCT
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.06
27 74 0.89
28 4 0.05
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:75399085 original size:54 final size:55
Alignment explanation
Indices: 75398974--75399154 Score: 161
Period size: 54 Copynumber: 3.3 Consensus size: 55
75398964 TGTAGGATAG
* * ** ***
75398974 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAATTTACAA
*
75399028 AATTACCGAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAATTTACAA
* * * * ** * **
75399082 AATTACAGAAATACCCT-TGACTCTCTAAAAATTATAAAAATACCATTGGTTTACAA
1 AATTACCGAAATACCCTCT-AATTTGT-AAAATTACCAAAATACCACTAATTTACAA
*
75399138 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
75399155 TGGTTTGTAG
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
54 60 0.58
55 5 0.05
56 39 0.38
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAATTTACAA
Found at i:75399149 original size:27 final size:27
Alignment explanation
Indices: 75399075--75399160 Score: 86
Period size: 27 Copynumber: 3.1 Consensus size: 27
75399065 ATACCCCTAA
* *
75399075 TTTACAAAATTACAGAAATACCCTTGAC
1 TTTACAAAATTACTGAAATACCCTTG-G
* *
75399103 TCTCTA-AAAATTA-TAAAAATACCATTGG
1 T-T-TACAAAATTACT-GAAATACCCTTGG
75399131 TTTACAAAATTACTGAAATACCCTTGG
1 TTTACAAAATTACTGAAATACCCTTGG
75399158 TTT
1 TTT
75399161 GTAGATTTAC
Statistics
Matches: 47, Mismatches: 6, Indels: 11
0.73 0.09 0.17
Matches are distributed among these distances:
26 2 0.04
27 22 0.47
28 3 0.06
29 18 0.38
30 2 0.04
ACGTcount: A:0.41, C:0.17, G:0.08, T:0.34
Consensus pattern (27 bp):
TTTACAAAATTACTGAAATACCCTTGG
Found at i:75399278 original size:27 final size:27
Alignment explanation
Indices: 75399201--75399278 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
75399191 AAATGACTAA
* *
75399201 AATACCCTT-AATAGGTAAAAAGACCGT
1 AATACCCTTGTAT-GGTAAAATGACCGT
* * *
75399228 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCTTGTATGGTAAAATGACCGT
75399255 AATACCCTTGTATGGTAAAATGAC
1 AATACCCTTGTATGGTAAAATGAC
75399279 GAATATGCCC
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 1 0.03
27 37 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AATACCCTTGTATGGTAAAATGACCGT
Found at i:75400009 original size:20 final size:20
Alignment explanation
Indices: 75399984--75400070 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
75399974 GATATGATAT
*
75399984 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
75400004 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
75400024 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
75400044 ACATGATATGTATGAAATGT
1 ACATGATATGTATGAAATGC
75400064 ACATGAT
1 ACATGAT
75400071 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:75400155 original size:26 final size:26
Alignment explanation
Indices: 75400120--75400241 Score: 150
Period size: 25 Copynumber: 5.0 Consensus size: 26
75400110 GAGGAAGTGA
75400120 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75400146 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
75400172 AAAA--G--TAAGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
75400194 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
75400219 AAAAGGGCTT-TGCCCCA-TTTATT
1 AAAAGGGCTTATGCCCCAGTTTATT
75400242 AAAGAGGCTA
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
22 18 0.22
24 6 0.07
25 29 0.35
26 29 0.35
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:75400194 original size:48 final size:47
Alignment explanation
Indices: 75400132--75400223 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 47
75400122 AAGGGCTTAT
75400132 GCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCGAAAAGTAA
1 GCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCGAAAAGTAA
75400180 GCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAG
1 GCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAG
75400224 GGCTTTGCCC
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 20 0.45
48 24 0.55
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (47 bp):
GCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCGAAAAGTAA
Found at i:75400346 original size:25 final size:24
Alignment explanation
Indices: 75400303--75400353 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
75400293 GTGTTGGATG
*
75400303 GGTGGGTTGAGTTATTCCCCACAT
1 GGTGGGTTGAGTTATTCCCCAAAT
75400327 GGTGGGTTGAG-TAGTCTCCCCAAAT
1 GGTGGGTTGAGTTA-T-TCCCCAAAT
75400352 GG
1 GG
75400354 GCTTGCATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 2 0.08
24 12 0.50
25 10 0.42
ACGTcount: A:0.18, C:0.20, G:0.33, T:0.29
Consensus pattern (24 bp):
GGTGGGTTGAGTTATTCCCCAAAT
Found at i:75400459 original size:31 final size:31
Alignment explanation
Indices: 75400421--75400526 Score: 167
Period size: 31 Copynumber: 3.4 Consensus size: 31
75400411 CGTTTACAGT
* * *
75400421 AAAGGCTTTGGGCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
75400452 AAAGGCTTCGGCCCAGTGAAATTATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
75400483 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
75400514 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
75400527 TAGTAACCGT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:75403665 original size:17 final size:18
Alignment explanation
Indices: 75403643--75403676 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75403633 CACATTGAAG
75403643 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
75403660 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
75403677 CCTTTGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:75405087 original size:28 final size:28
Alignment explanation
Indices: 75405047--75405155 Score: 128
Period size: 28 Copynumber: 3.9 Consensus size: 28
75405037 TGGGAAGTAG
* *
75405047 TTGGGCTTGATGGGCCATATGAATGTGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
*
75405075 TTGGGCCTAATGGGCCATATGAATATGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
* * * *
75405103 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTAATGGGCCATATGAATGTGA
* *
75405131 TTGGGCCTAAAGGGGCCAAATGAAT
1 TTGGGCCT-AATGGGCCATATGAAT
75405156 AAGTGTGGAT
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
28 56 0.84
29 11 0.16
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.26
Consensus pattern (28 bp):
TTGGGCCTAATGGGCCATATGAATGTGA
Found at i:75405114 original size:56 final size:57
Alignment explanation
Indices: 75405047--75405156 Score: 159
Period size: 56 Copynumber: 1.9 Consensus size: 57
75405037 TGGGAAGTAG
* * * * *
75405047 TTGGGCTTGATGGGCCATATGAATGTGATTGGGCCT-AATGGGCCATATGAATATGA
1 TTGGGCCTGATGGGCCATATGAACGAGATTGGGCCTAAAGGGGCCAAATGAATATGA
*
75405103 TTGGGCCTGATGGGCCATGTGAACGAGATTGGGCCTAAAGGGGCCAAATGAATA
1 TTGGGCCTGATGGGCCATATGAACGAGATTGGGCCTAAAGGGGCCAAATGAATA
75405157 AGTGTGGATC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
56 32 0.68
57 15 0.32
ACGTcount: A:0.26, C:0.15, G:0.34, T:0.25
Consensus pattern (57 bp):
TTGGGCCTGATGGGCCATATGAACGAGATTGGGCCTAAAGGGGCCAAATGAATATGA
Found at i:75405493 original size:27 final size:27
Alignment explanation
Indices: 75405454--75405739 Score: 287
Period size: 27 Copynumber: 10.7 Consensus size: 27
75405444 TAATAAAGAG
*
75405454 AAATTATTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
75405481 AAATTACTAAAATACCCTCGATTATG--
1 AAATTACTGAAATACCCTCGATT-TGTA
* * * *
75405507 AAATTACTAAAATGCCCTCAATTTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
* *
75405534 AAATTACTGAAACACCCTCTATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
75405561 AAATTACCGAAATACCCTAGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
75405587 AAATTACCAAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
75405614 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
** *
75405641 AAATTACCAAAATACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
75405668 AAATTA-TCGAAACACCCTCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * *
75405695 AAATTA-TCGAAATATCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
75405722 AAATTACTGAAATACCCT
1 AAATTACTGAAATACCCT
75405740 TGTGTAAAAT
Statistics
Matches: 225, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
25 2 0.01
26 45 0.20
27 175 0.78
28 3 0.01
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:75405538 original size:53 final size:53
Alignment explanation
Indices: 75405463--75405700 Score: 266
Period size: 53 Copynumber: 4.5 Consensus size: 53
75405453 GAAATTATTG
* * * *
75405463 AAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTATG-AAATTACTA
1 AAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATT-TGAAAATTACCA
* * ** * *
75405516 AAATGCCCTCAATTTGTGAAATTACTGAAACACCCTCTATTTGTAAAATTACCG
1 AAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTG-AAAATTACCA
75405570 AAATACCCT-AGA-TTGTAAAATTACCAAAACACCCTCGATTTGTAAAATTACCA
1 AAATACCCTCA-ATTTGTAAAATTACCAAAACACCCTCGATTTG-AAAATTACCA
* * * *
75405623 AAATACCCTCAATTTGTAAAATTACCAAAATACCCTCAATTTGTAAAATTATCG
1 AAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTG-AAAATTACCA
* *
75405677 AAACACCCTCGATTTGTAAAATTA
1 AAATACCCTCAATTTGTAAAATTA
75405701 TCGAAATATC
Statistics
Matches: 160, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
52 2 0.01
53 82 0.51
54 76 0.47
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (53 bp):
AAATACCCTCAATTTGTAAAATTACCAAAACACCCTCGATTTGAAAATTACCA
Found at i:75405591 original size:80 final size:80
Alignment explanation
Indices: 75405453--75405708 Score: 291
Period size: 80 Copynumber: 3.2 Consensus size: 80
75405443 ATAATAAAGA
* * * * * * *
75405453 GAAATTATTGAAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTATGAAATTACTAAA
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTAGATTGTAAAATTACCAAA
**
75405518 ATGCCCTCAATTTGT
66 ACACCCTCAATTTGT
* * *
75405533 GAAATTACTGAAACACCCTCTATTTGTAAAATTACCGAAATACCCTAGATTGTAAAATTACCAAA
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTAGATTGTAAAATTACCAAA
*
75405598 ACACCCTCGATTTGT
66 ACACCCTCAATTTGT
* ** * *
75405613 AAAATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCTCA-ATTTGTAAAATTATCG
1 GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCT-AGA-TTGTAAAATTACCA
*
75405677 AAACACCCTCGATTTGT
64 AAACACCCTCAATTTGT
*
75405694 AAAATTA-TCGAAATA
1 GAAATTACT-GAAATA
75405709 TCCTTGTAGT
Statistics
Matches: 151, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 109 0.72
81 42 0.28
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.30
Consensus pattern (80 bp):
GAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCTAGATTGTAAAATTACCAAA
ACACCCTCAATTTGT
Found at i:75405722 original size:81 final size:80
Alignment explanation
Indices: 75405463--75405739 Score: 270
Period size: 80 Copynumber: 3.5 Consensus size: 80
75405453 GAAATTATTG
* * ** * * * * ** *
75405463 AAATACCCTCGATTTGTAAAATTACTAAAATACCCTCGATTATGAAATTACTAAAATGCCCTCAA
1 AAATACCCTCAATGTGTAAAATTACCGAAATACCCTAGATTGTAAAATTACCAAAACACCCTCGA
* **
75405528 TTTGTGAAATTACTG
66 TTTGTAAAATTACCA
* * *
75405543 AAACACCCTCTATTTGTAAAATTACCGAAATACCCTAGATTGTAAAATTACCAAAACACCCTCGA
1 AAATACCCTCAATGTGTAAAATTACCGAAATACCCTAGATTGTAAAATTACCAAAACACCCTCGA
75405608 TTTGTAAAATTACCA
66 TTTGTAAAATTACCA
* * * *
75405623 AAATACCCTCAATTTGTAAAATTACCAAAATACCCTCA-ATTTGTAAAATTATCGAAACACCCTC
1 AAATACCCTCAATGTGTAAAATTACCGAAATACCCT-AGA-TTGTAAAATTACCAAAACACCCTC
* *
75405687 GATTTGTAAAATTATCG
64 GATTTGTAAAATTACCA
* ** *
75405704 AAATATCCT-TGTAGTGTAAAATTACTGAAATACCCT
1 AAATACCCTCAAT-GTGTAAAATTACCGAAATACCCT
75405740 TGTGTAAAAT
Statistics
Matches: 167, Mismatches: 27, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
80 101 0.60
81 66 0.40
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.31
Consensus pattern (80 bp):
AAATACCCTCAATGTGTAAAATTACCGAAATACCCTAGATTGTAAAATTACCAAAACACCCTCGA
TTTGTAAAATTACCA
Found at i:75414739 original size:21 final size:20
Alignment explanation
Indices: 75414713--75414757 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
75414703 ATGCATATAT
75414713 ATATCATGGCATATCATGTGC
1 ATATCATGGCATATCATG-GC
*
75414734 ATATCATGGCATATTATGGC
1 ATATCATGGCATATCATGGC
75414754 ATAT
1 ATAT
75414758 TATGTACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (20 bp):
ATATCATGGCATATCATGGC
Found at i:75414761 original size:10 final size:10
Alignment explanation
Indices: 75414713--75414757 Score: 72
Period size: 10 Copynumber: 4.4 Consensus size: 10
75414703 ATGCATATAT
75414713 ATATCATGGC
1 ATATCATGGC
75414723 ATATCATGTGC
1 ATATCATG-GC
75414734 ATATCATGGC
1 ATATCATGGC
*
75414744 ATATTATGGC
1 ATATCATGGC
75414754 ATAT
1 ATAT
75414758 TATGTACAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
10 23 0.70
11 10 0.30
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.36
Consensus pattern (10 bp):
ATATCATGGC
Found at i:75424615 original size:47 final size:47
Alignment explanation
Indices: 75424562--75425313 Score: 1207
Period size: 47 Copynumber: 15.7 Consensus size: 47
75424552 TTAGGATTCT
75424562 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
75424609 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
75424658 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75424705 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
75424754 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCG
* * *
75424805 ATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75424852 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * *
75424901 ATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75424948 ATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
75424997 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
75425044 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
75425091 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75425138 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
75425185 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
75425232 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
75425279 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
75425314 TCCCGAAGGG
Statistics
Matches: 665, Mismatches: 30, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
47 438 0.66
49 178 0.27
51 49 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:75425095 original size:94 final size:94
Alignment explanation
Indices: 75424562--75425313 Score: 1207
Period size: 96 Copynumber: 7.9 Consensus size: 94
75424552 TTAGGATTCT
75424562 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
75424627 TGTATATATATGTGATAAGGCCGAATAGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
* *
75424658 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
75424723 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TG--TATATATGTGATAAGGCCTAATGGCCG
75424754 ATGTGATGAATGTGAAAGTGTATATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 ATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * *
75424819 AAAGTGTGTATATGTGATAAGGCCGAATGGCCA
62 AAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
75424852 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
75424917 AGTGTATATATGTGATAAGGCCGAATGGCCA
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
75424948 ATGTGATGAATGTGAAAGTGTCTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
75425013 AGTGTATATATGTGATAAGGCCTAATAGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
*
75425044 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
75425109 TGTATATATGTGATAAGGCCTAATAGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
75425138 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
75425203 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
75425232 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
75425297 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
75425314 TCCCGAAGGG
Statistics
Matches: 625, Mismatches: 27, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
94 239 0.38
96 297 0.48
98 44 0.07
100 45 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:75425482 original size:37 final size:37
Alignment explanation
Indices: 75425432--75425532 Score: 193
Period size: 37 Copynumber: 2.7 Consensus size: 37
75425422 CCGAGCTCTA
75425432 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
75425469 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
75425506 AAGACCCGATGACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
75425533 TCGTCTGAGC
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:75426715 original size:10 final size:10
Alignment explanation
Indices: 75426667--75426711 Score: 63
Period size: 10 Copynumber: 4.4 Consensus size: 10
75426657 GCATATATAT
75426667 ATATCATGGC
1 ATATCATGGC
*
75426677 ATATCATGTGT
1 ATATCATG-GC
75426688 ATATCATGGC
1 ATATCATGGC
*
75426698 ATATTATGGC
1 ATATCATGGC
75426708 ATAT
1 ATAT
75426712 TATGTACAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
10 22 0.71
11 9 0.29
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (10 bp):
ATATCATGGC
Found at i:75426813 original size:38 final size:38
Alignment explanation
Indices: 75426762--75426838 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
75426752 ACCCTAGGGG
75426762 TATAATAATCATTTTCACCTAGGGGCAAAAAGGTCATT
1 TATAATAATCATTTTCACCTAGGGGCAAAAAGGTCATT
75426800 TATAATAATCATTTTCACCTAGGGGCAAAAAGGTCATT
1 TATAATAATCATTTTCACCTAGGGGCAAAAAGGTCATT
75426838 T
1 T
75426839 TCACATTATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (38 bp):
TATAATAATCATTTTCACCTAGGGGCAAAAAGGTCATT
Found at i:75430802 original size:22 final size:22
Alignment explanation
Indices: 75430777--75430821 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
75430767 GATGTGACCA
75430777 TAGATGTTTGGTAATGGAGTTG
1 TAGATGTTTGGTAATGGAGTTG
*
75430799 TAGATGTTTGGTGATGGAGTTG
1 TAGATGTTTGGTAATGGAGTTG
75430821 T
1 T
75430822 GAGTAAATAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (22 bp):
TAGATGTTTGGTAATGGAGTTG
Found at i:75438936 original size:25 final size:26
Alignment explanation
Indices: 75438907--75438962 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
75438897 TTAATTAATA
*
75438907 TAAAATATT-AATAATTGAAT-AAAT
1 TAAAATATTAAATAATTAAATAAAAT
75438931 TGAAAA-ATTAAATAATTAAATAAAAT
1 T-AAAATATTAAATAATTAAATAAAAT
75438957 TAAAAT
1 TAAAAT
75438963 TTAGGAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 4 0.15
25 18 0.67
26 5 0.19
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (26 bp):
TAAAATATTAAATAATTAAATAAAAT
Found at i:75441016 original size:28 final size:27
Alignment explanation
Indices: 75440974--75441113 Score: 165
Period size: 27 Copynumber: 5.1 Consensus size: 27
75440964 GCATGGCTGT
* * *
75440974 CAGAACAGATA-TTGTGACAGAGTCAC
1 CAGATCAGATATTTGTGGCAGAGCCAC
* * * * *
75441000 CAGATATAGATAATTGTGGCAGGGGCAA
1 CAGAT-CAGATATTTGTGGCAGAGCCAC
*
75441028 CAGAAACAGATATTTGTGGCAGAGCCAC
1 CAG-ATCAGATATTTGTGGCAGAGCCAC
*
75441056 TAGATCAGATATTTGTGGCAGAGCCAC
1 CAGATCAGATATTTGTGGCAGAGCCAC
75441083 CAGATCAGATATTTGTGGCAGAGCCAC
1 CAGATCAGATATTTGTGGCAGAGCCAC
75441110 CAGA
1 CAGA
75441114 ACGCTTCGTC
Statistics
Matches: 96, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
26 4 0.04
27 58 0.60
28 33 0.34
29 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (27 bp):
CAGATCAGATATTTGTGGCAGAGCCAC
Found at i:75442190 original size:17 final size:17
Alignment explanation
Indices: 75442168--75442200 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75442158 TCGGCTATGT
75442168 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
75442185 AGAAAAGAAGAGATGA
1 AGAAAAGAAAAGATGA
75442201 GAAGGGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:75444245 original size:28 final size:28
Alignment explanation
Indices: 75444192--75444300 Score: 132
Period size: 28 Copynumber: 4.0 Consensus size: 28
75444182 GGCTGTCAAA
* *
75444192 ACAGAT-ATTGTGACAGAGTCACCAGAT
1 ACAGATAATTGTGGCAGAGCCACCAGAT
* * *
75444219 ACAGATAATTGTGGCAGGGCCAACAGAA
1 ACAGATAATTGTGGCAGAGCCACCAGAT
*
75444247 ACAGATATTTGTGGCAGAGCCACCAGAT
1 ACAGATAATTGTGGCAGAGCCACCAGAT
* *
75444275 -CAGATATTTGTGGCAGAGCCCCCAGA
1 ACAGATAATTGTGGCAGAGCCACCAGA
75444301 ACGCTTCCTC
Statistics
Matches: 71, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 31 0.44
28 40 0.56
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (28 bp):
ACAGATAATTGTGGCAGAGCCACCAGAT
Found at i:75444301 original size:55 final size:55
Alignment explanation
Indices: 75444190--75444294 Score: 158
Period size: 55 Copynumber: 1.9 Consensus size: 55
75444180 ATGGCTGTCA
* *
75444190 AAACAGATATTGTGACAGAGTCACCAGATACAGATAATTGTGGCAGGGCCAACAG
1 AAACAGATATTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCAACAG
* *
75444245 AAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGCAGAGCC
1 AAACAGATA-TTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCC
75444295 CCCAGAACGC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
55 27 0.60
56 18 0.40
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.20
Consensus pattern (55 bp):
AAACAGATATTGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAGCCAACAG
Found at i:75445231 original size:17 final size:17
Alignment explanation
Indices: 75445209--75445241 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
75445199 TCGGCTATGG
75445209 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
*
75445226 AGAAAAGAAGAGATGA
1 AGAAAAGAAAAGATGA
75445242 GAAGGGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.27, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:75451993 original size:28 final size:28
Alignment explanation
Indices: 75451940--75452047 Score: 132
Period size: 28 Copynumber: 4.0 Consensus size: 28
75451930 GGCTGTCAAA
* *
75451940 ACAGAT-ATTGTGACAGAGTCACCAGAT
1 ACAGATAATTGTGGCAGAGCCACCAGAT
* * *
75451967 ACAGATAATTGTGGCAGGGCCAACAGAA
1 ACAGATAATTGTGGCAGAGCCACCAGAT
*
75451995 ACAGATATTTGTGGCAGAGCCACCAGAT
1 ACAGATAATTGTGGCAGAGCCACCAGAT
*
75452023 -CAGATATTTGTGGCAGAGCC-CCAGA
1 ACAGATAATTGTGGCAGAGCCACCAGA
75452048 ACGCTTCCTC
Statistics
Matches: 71, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
26 5 0.07
27 26 0.37
28 40 0.56
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.19
Consensus pattern (28 bp):
ACAGATAATTGTGGCAGAGCCACCAGAT
Found at i:75465089 original size:41 final size:41
Alignment explanation
Indices: 75465032--75465114 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
75465022 CGAGCCTTGG
*
75465032 ATCTAACAGTTGTGTCTTTTGTCCCTCTCTAACTACCACTT
1 ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
* * *
75465073 ATCTAATAGCTGTGTCTTTTGTCCCTTTCTGACTACCACTT
1 ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
75465114 A
1 A
75465115 CATTTCTTGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.19, C:0.28, G:0.11, T:0.42
Consensus pattern (41 bp):
ATCTAACAGCTGTGTCTTTTGTCCCTCTCTAACTACCACTT
Found at i:75468093 original size:40 final size:40
Alignment explanation
Indices: 75468025--75468192 Score: 149
Period size: 40 Copynumber: 4.2 Consensus size: 40
75468015 CGGCGTTTAG
** * *
75468025 CCGGATATAACCACTCGCAC-AAGGCCTTCGGGTCTTAAC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
75468064 CTGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * **
75468104 CCGGATATAGTCGCTAGCACAAATGCCTTCGGATCTTAGT
1 CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * * *
75468144 CCGGATGTAGTCGCTTAGCACAAAAGCCTTTGGGACTTAGC
1 CCGGATATAGTCAC-TAGCACAAATGCCTTCGGGTCTTAAC
75468185 CCGGATAT
1 CCGGATAT
75468193 CATTCGAGTA
Statistics
Matches: 104, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
39 14 0.13
40 62 0.60
41 28 0.27
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:75468183 original size:41 final size:40
Alignment explanation
Indices: 75468048--75468192 Score: 157
Period size: 40 Copynumber: 3.6 Consensus size: 40
75468038 CTCGCACAAG
* * * * * * *
75468048 GCCTTCGGGTCTTAACCTGGATATGGTCACTAGCATAAAT
1 GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
*
75468088 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
75468128 GCC-TTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTTGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
75468169 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTTGGGACTTAGCCCGGATAT
75468193 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 4 0.05
40 55 0.62
41 24 0.27
42 5 0.06
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (40 bp):
GCCTTTGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:75474131 original size:27 final size:27
Alignment explanation
Indices: 75474100--75474155 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
75474090 TAAAACAAGT
75474100 GAGAAAAAAGAAAAAGAGAATGAAAAA
1 GAGAAAAAAGAAAAAGAGAATGAAAAA
* ** *
75474127 GAGAAAAAAGAGATTGAGAGTGAAAAA
1 GAGAAAAAAGAAAAAGAGAATGAAAAA
75474154 GA
1 GA
75474156 AATTGAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.66, C:0.00, G:0.27, T:0.07
Consensus pattern (27 bp):
GAGAAAAAAGAAAAAGAGAATGAAAAA
Found at i:75476949 original size:27 final size:26
Alignment explanation
Indices: 75476911--75476970 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
75476901 CCACATATAT
* *
75476911 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
75476937 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
75476964 ATATCTG
1 ATATCTG
75476971 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:75485563 original size:30 final size:29
Alignment explanation
Indices: 75485520--75485583 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
75485510 CAAGTAGCCG
*
75485520 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTACCA
*
75485549 AAGCTAGTTTAAATCGCACACTTTGTACCA
1 AAGCTAG-TTAAATCGCACACTTAGTACCA
75485579 AAGCT
1 AAGCT
75485584 TCCGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTACCA
Found at i:75487709 original size:21 final size:22
Alignment explanation
Indices: 75487685--75487727 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
75487675 ACCCAAACTA
* *
75487685 AATTGGATTAA-ATTTAAAATT
1 AATTAGATTAAGAATTAAAATT
*
75487706 AATTATATTAAGAATTAAAATT
1 AATTAGATTAAGAATTAAAATT
75487728 CATAATTTCG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (22 bp):
AATTAGATTAAGAATTAAAATT
Found at i:75493353 original size:23 final size:23
Alignment explanation
Indices: 75493323--75493368 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
75493313 TATAGAGACT
75493323 GTTAGTCTATTATCATTCAGTTA
1 GTTAGTCTATTATCATTCAGTTA
*
75493346 GTTAGTCTGTTATCATTCAGTTA
1 GTTAGTCTATTATCATTCAGTTA
75493369 CATAGTGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.48
Consensus pattern (23 bp):
GTTAGTCTATTATCATTCAGTTA
Found at i:75493374 original size:23 final size:23
Alignment explanation
Indices: 75493325--75493374 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
75493315 TAGAGACTGT
**
75493325 TAGTCTATTATCATTCAGTTAGT
1 TAGTCTATTATCATTCAGTTACA
*
75493348 TAGTCTGTTATCATTCAGTTACA
1 TAGTCTATTATCATTCAGTTACA
75493371 TAGT
1 TAGT
75493375 GTGGTGTATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (23 bp):
TAGTCTATTATCATTCAGTTACA
Found at i:75499307 original size:40 final size:40
Alignment explanation
Indices: 75499245--75499461 Score: 296
Period size: 40 Copynumber: 5.5 Consensus size: 40
75499235 AAGCCAAGTA
* * *
75499245 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACGAATG
* *
75499284 CCTTCGGGACATAGCCCGGATATAGTAACTTGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
75499324 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
*
75499364 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
* * * * *
75499404 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATA
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACGAATG
75499444 CCTTCGGGACTTAGCCCG
1 CCTTCGGGACTTAGCCCG
75499462 ATTATCATCC
Statistics
Matches: 163, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 13 0.08
40 150 0.92
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACGAATG
Found at i:75519253 original size:47 final size:47
Alignment explanation
Indices: 75519184--75519279 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
75519174 AGTCACCTTG
* *
75519184 TTAAGCTGCCGATAATCTATGCACAATCTCATCGAACCATCTTTTTT
1 TTAAGCTGCCAATAATCTATGCACAATCTCATCAAACCATCTTTTTT
*
75519231 TTAAGCTGCCAATAATTTATGCACAATCTCATCAAACCATCTTTTTT
1 TTAAGCTGCCAATAATCTATGCACAATCTCATCAAACCATCTTTTTT
75519278 TT
1 TT
75519280 CACAAAAAGC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (47 bp):
TTAAGCTGCCAATAATCTATGCACAATCTCATCAAACCATCTTTTTT
Found at i:75524436 original size:47 final size:45
Alignment explanation
Indices: 75524327--75524456 Score: 138
Period size: 47 Copynumber: 2.8 Consensus size: 45
75524317 ATGTCTCGAG
* *
75524327 GCCGATGCATGTCCCAGACATGCCTTACACTAGCACTCGTATCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCG-ATCAAT
* *
75524373 GCCGATGCCATATCCCAGACATGGTCTTACACTGGCTCTC-AT-AATGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGATCAA--T
* *
75524420 GGTCGATGCATGTCCCAAACATGTCTTACACTAGCTC
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
75524457 ACAATAACCC
Statistics
Matches: 71, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
45 2 0.03
46 23 0.32
47 26 0.37
48 20 0.28
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGATCAAT
Found at i:75527002 original size:28 final size:28
Alignment explanation
Indices: 75526966--75527030 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
75526956 CGTCTCCATG
75526966 GCCCGTGTCCCTCACACGGCCATGACAC
1 GCCCGTGTCCCTCACACGGCCATGACAC
* *
75526994 GCCCTTGTCCCTCATACGGCCATGACAC
1 GCCCGTGTCCCTCACACGGCCATGACAC
*
75527022 ACCCGTGTC
1 GCCCGTGTC
75527031 TCAGCCCGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.17, C:0.45, G:0.20, T:0.18
Consensus pattern (28 bp):
GCCCGTGTCCCTCACACGGCCATGACAC
Found at i:75528291 original size:48 final size:47
Alignment explanation
Indices: 75528215--75528383 Score: 171
Period size: 48 Copynumber: 3.5 Consensus size: 47
75528205 GGTAAATTGT
* * * *
75528215 CGATGCCATATCCCAGATATGGTTTTACACTGGCTCACATGTCGACGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAAATGTCGA-GC
* ** * * *
75528263 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAAATGTCGA-GC
*
75528311 CGATGCCATGTCCGAGACATGGTCTTACACTGGCTCTTATAATGT-G-GC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTC--A-AATGTCGAGC
*
75528359 CGATGCCATGTCCCAAACATGGTCT
1 CGATGCCATGTCCCAGACATGGTCT
75528384 AGCACACATA
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
48 96 0.97
50 1 0.01
51 2 0.02
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAAATGTCGAGC
Found at i:75533318 original size:32 final size:32
Alignment explanation
Indices: 75533258--75533360 Score: 100
Period size: 32 Copynumber: 3.2 Consensus size: 32
75533248 ATACGGCTTT
* * *
75533258 AAGCCTTCAACAACGGTATTATAATTGGCACA
1 AAGCCATCAGCAACGGTAATATAATTGGCACA
* * * *
75533290 AAGCCATCGGTAACTGTAATA-AATTTGGCATA
1 AAGCCATCAGCAACGGTAATATAA-TTGGCACA
* *
75533322 TAGCCATCAGCGACGGTAATATAATTGGCACA
1 AAGCCATCAGCAACGGTAATATAATTGGCACA
*
75533354 CAGCCAT
1 AAGCCAT
75533361 GAGTAAATAC
Statistics
Matches: 55, Mismatches: 14, Indels: 4
0.75 0.19 0.05
Matches are distributed among these distances:
31 2 0.04
32 51 0.93
33 2 0.04
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (32 bp):
AAGCCATCAGCAACGGTAATATAATTGGCACA
Found at i:75533380 original size:27 final size:27
Alignment explanation
Indices: 75533350--75533427 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
75533340 ATATAATTGG
*
75533350 CACACAGCCATGAGTAAATACGATCGA
1 CACACAGCCATGAGTAAATACGATAGA
* * * * * *
75533377 CACAGAGTCATCAATAAATATGATAGG
1 CACACAGCCATGAGTAAATACGATAGA
*
75533404 CACATAGCCATTG-GTAAATACGAT
1 CACACAGCCA-TGAGTAAATACGAT
75533428 TTGCACAAAG
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
CACACAGCCATGAGTAAATACGATAGA
Found at i:75533440 original size:54 final size:54
Alignment explanation
Indices: 75533339--75533441 Score: 129
Period size: 54 Copynumber: 1.9 Consensus size: 54
75533329 CAGCGACGGT
* *
75533339 AATATAATTGGCACACAGCCATGAGTAAATACGATCGACACAGAGTCATCAATA
1 AATATAATAGGCACACAGCCATGAGTAAATACGATCGACACAAAGTCATCAATA
* * *
75533393 AATATGATAGGCACATAGCCATTG-GTAAATACGATTTG-CACAAAGTCAT
1 AATATAATAGGCACACAGCCA-TGAGTAAATACGA-TCGACACAAAGTCAT
75533442 AATCAACATA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
54 38 0.90
55 4 0.10
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.23
Consensus pattern (54 bp):
AATATAATAGGCACACAGCCATGAGTAAATACGATCGACACAAAGTCATCAATA
Found at i:75533464 original size:22 final size:22
Alignment explanation
Indices: 75533430--75533491 Score: 52
Period size: 22 Copynumber: 2.8 Consensus size: 22
75533420 AATACGATTT
* *
75533430 GCACAAAGTCATAATCAACATA
1 GCACAGAGCCATAATCAACATA
* * *** *
75533452 GCACAGAGCCATATTTAGGTTG
1 GCACAGAGCCATAATCAACATA
75533474 GCACAGAGCCATAATCAA
1 GCACAGAGCCATAATCAA
75533492 ATTAAGCAGC
Statistics
Matches: 29, Mismatches: 11, Indels: 0
0.73 0.28 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.40, C:0.23, G:0.18, T:0.19
Consensus pattern (22 bp):
GCACAGAGCCATAATCAACATA
Found at i:75538669 original size:18 final size:17
Alignment explanation
Indices: 75538643--75538676 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
75538633 CATAATGCAG
75538643 GCCCATGTGGGCCCACAT
1 GCCCATGT-GGCCCACAT
*
75538661 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
75538677 AGCCTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.41, G:0.29, T:0.15
Consensus pattern (17 bp):
GCCCATGTGGCCCACAT
Found at i:75548707 original size:26 final size:26
Alignment explanation
Indices: 75548658--75548720 Score: 101
Period size: 26 Copynumber: 2.4 Consensus size: 26
75548648 ATTTACTAAA
75548658 ATACCCCTAAGTATGAAAATTACCATT
1 ATACCCCT-AGTATGAAAATTACCATT
75548685 ATACCCCTAG-ATGTAAAATTACCATT
1 ATACCCCTAGTATG-AAAATTACCATT
75548711 ATACCCCTAG
1 ATACCCCTAG
75548721 GGTTAATTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
25 3 0.09
26 24 0.69
27 8 0.23
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (26 bp):
ATACCCCTAGTATGAAAATTACCATT
Found at i:75548863 original size:27 final size:27
Alignment explanation
Indices: 75548825--75548936 Score: 126
Period size: 27 Copynumber: 4.2 Consensus size: 27
75548815 GAGGAAGCGT
75548825 TCTGGTGGCTCTGCTACAAATATCTGA
1 TCTGGTGGCTCTGCTACAAATATCTGA
75548852 TCTGGTGGCTCTGCTACAAATATCT-A
1 TCTGGTGGCTCTGCTACAAATATCTGA
*
75548878 TTTCTAGTGGCTCTGC--CATAATATCTGTA
1 --TCTGGTGGCTCTGCTACA-AATATCTG-A
* *
75548907 TCTGGTGACTCTG-TAC-AATATCTGT
1 TCTGGTGGCTCTGCTACAAATATCTGA
75548932 TCTGG
1 TCTGG
75548937 CAGTCATGCT
Statistics
Matches: 74, Mismatches: 4, Indels: 16
0.79 0.04 0.17
Matches are distributed among these distances:
25 5 0.07
26 11 0.15
27 43 0.58
28 14 0.19
29 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
TCTGGTGGCTCTGCTACAAATATCTGA
Found at i:75548913 original size:55 final size:52
Alignment explanation
Indices: 75548824--75548929 Score: 142
Period size: 55 Copynumber: 2.0 Consensus size: 52
75548814 GGAGGAAGCG
* *
75548824 TTCTGGTGGCTCTGCTACAAATATCTGATCTGGTGGCTCTGCTACAAATATCTAT
1 TTCTAGTGGCTCTGC-ACAAATATCTGATCTGGTGACTCTG-TAC-AATATCTAT
75548879 TTCTAGTGGCTCTGC-CATAATATCTGTATCTGGTGACTCTGTACAATATCT
1 TTCTAGTGGCTCTGCACA-AATATCTG-ATCTGGTGACTCTGTACAATATCT
75548930 GTTCTGGCAG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
53 9 0.19
54 11 0.23
55 27 0.57
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (52 bp):
TTCTAGTGGCTCTGCACAAATATCTGATCTGGTGACTCTGTACAATATCTAT
Found at i:75556771 original size:26 final size:27
Alignment explanation
Indices: 75556677--75556784 Score: 132
Period size: 27 Copynumber: 4.0 Consensus size: 27
75556667 AAGTGTTCTA
*
75556677 GTGGCTCTGTCACAAATATCTG-ATCTG
1 GTGGCTCTGCCAC-AATATCTGTATCTG
*
75556704 GTGGCTCTGCCACAGATATCTGTTTCTG
1 GTGGCTCTGCCACA-ATATCTGTATCTG
*
75556732 GTGGCTCTACCACAATATCTGTATC-G
1 GTGGCTCTGCCACAATATCTGTATCTG
* *
75556758 GTGACTCTGTCACAATATCTGT-TCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
75556784 G
1 G
75556785 CAGCCATGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
25 2 0.03
26 23 0.32
27 29 0.41
28 17 0.24
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.34
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:75559808 original size:38 final size:38
Alignment explanation
Indices: 75559766--75559841 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 38
75559756 TGTTAACAAC
*
75559766 TACAGTTCAAACTGTTAAACTTGGAAGTTCAAGAATTT
1 TACAGTTCAAACTATTAAACTTGGAAGTTCAAGAATTT
* *
75559804 TACAGTTCAAACTATTAGACTTGGAAGTTCAGGAATTT
1 TACAGTTCAAACTATTAAACTTGGAAGTTCAAGAATTT
75559842 ACACAACCCA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (38 bp):
TACAGTTCAAACTATTAAACTTGGAAGTTCAAGAATTT
Found at i:75571350 original size:46 final size:45
Alignment explanation
Indices: 75571184--75571362 Score: 180
Period size: 46 Copynumber: 3.9 Consensus size: 45
75571174 TGTAACCCGC
* * *
75571184 CCATAAGTGAACTCGGACTCAAATCAATGAGCTCGGGTG-TTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTT-G-AT
* * *
75571230 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTTGAT
* *** * *
75571276 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTTGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGATGCTTG-AT
* *
75571323 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGATGC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
75571363 CCAAATATCC
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 75 0.68
47 34 0.31
48 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.22, T:0.24
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTTGAT
Found at i:75571359 original size:93 final size:93
Alignment explanation
Indices: 75571192--75571363 Score: 247
Period size: 93 Copynumber: 1.8 Consensus size: 93
75571182 GCCCATAAGT
* ** *
75571192 GAACTCGGACTCAAATCAATGAGCTCGGGTGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAAATCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
75571257 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* * *
75571285 GAACTCGGACTCAACTCAACGAGTTCGGACGCTT-GCATCCATAAGTGAACTTGGACTCAACTCA
1 GAACTCGGACTCAAATCAACGAGCTCGGACG-TTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
75571349 ACGAGTTCGGATGCC
65 ACGAGCTCGGATGCC
75571364 CAAATATCCC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
93 67 0.97
94 2 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAAATCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:75580931 original size:438 final size:440
Alignment explanation
Indices: 75580100--75580918 Score: 1096
Period size: 438 Copynumber: 1.9 Consensus size: 440
75580090 GAACAAGCAA
* * * * *
75580100 CTGAAAACACAAAAATATACACACTTTTTCATGCCCTTTTTAACTTAAATTCATGCAGTTTTGGT
1 CTGAAAACACAAAAATATACACACTTTTTCATACCCTTTTTAACTTAAAATCATACAGTTTCGAT
* *
75580165 AAAATTCTTATCGAAAAATAATTAATTTTTATAAAATAATTAAAATTGCACTTAAATTATGAACA
66 AAAATTCTTATCGAAAAATAATTAATTTTTATAAAATAATTAAAATTACACTTAAAATATGAACA
* * * * *
75580230 TGTTGAATTTTAATTAATTTTATAATTAATTTTGATTACTTTTGATCATTTTTTGACAAGTTTGC
131 TGATGAATTTTAATTAATTTTATAATTAATTTTGAGTAATTTTGATCATTTTTCGACAAGATTGC
** *
75580295 ACAAAGGGAAAAAAAAGACTCGGCAGACACTGCTAGAAGTTCAAAACTGAGAAGCAATTTGAAGT
196 ACAAAGGGAAAAAAAAGACTCGGCAGACACTGCTAGAAGCACAAAACCGAGAAGCAATTTGAAGT
* * * *
75580360 ATCAAGGCAAATTAATTTTCAGCCTAAGTCGGTCCAATTATGTGTATTAATTGATGATATAATTA
261 ATAAAGGCAAATTAATTTCCAGCCTAAGACGGTCCAATTATGTGTATTAATTGATAATATAATTA
* * ** *
75580425 ATTTTAATTTATATCCAATTTAATTTGGATTAAATAAATTTTTATTAATTAATTCTAAAAAAAGT
326 ATTTTAATTTATACCCAATTTAATTTGGACTAAATAAATTAATATTAATTAATTATAAAAAAAGT
75580490 GGTCTAGTGGAGCTGAATCGAGTGAACCGAACCGACCAAGAAGTGGACAG
391 GGTCTAGTGGAGCTGAATCGAGTGAACCGAACCGACCAAGAAGTGGACAG
** * *
75580540 CTGAAAACACGAAAAAT-TACGTA-TTTTTACATACCCTTTTTAGCTTAAAATCATACCGTTTCG
1 CTGAAAACAC-AAAAATATACACACTTTTT-CATACCCTTTTTAACTTAAAATCATACAGTTTCG
* * *
75580603 ATTAAATTCTTGTCGAAAAATAATTAATTTTTATAAAATAATT-AAATTATACTTAAAATATGAA
64 ATAAAATTCTTATCGAAAAATAATTAATTTTTATAAAATAATTAAAATTACACTTAAAATATGAA
* * * * *
75580667 CATGATGAATTTTAGTTAA-TTTATTATTAATTTTGAGTAATTTTGGTTA-TTTTCGA-TAGAAT
129 CATGATGAATTTTAATTAATTTTATAATTAATTTTGAGTAATTTTGATCATTTTTCGACAAG-AT
** ** * * * **
75580729 TGCGTAAAGGGCGAAAAATGGCTCGGTAGACACTATTTA-AAGCACAAAACCGAGAAGCAATTTG
193 TGCACAAAGGGAAAAAAAAGACTCGGCAGACACT-GCTAGAAGCACAAAACCGAGAAGCAATTTG
* *
75580793 AAGTATAAAGGCGAATTAATTTCCAGCCTAAGACGGGTCCAATTATTTGTATTAATT-ACTAATA
257 AAGTATAAAGGCAAATTAATTTCCAGCCTAAGAC-GGTCCAATTATGTGTATTAATTGA-TAATA
*
75580857 TAATTAATTTTAATTTATACCCAATTTAATTTGGGCTAAATAAATTAATATTAATTAATTAT
320 TAATTAATTTTAATTTATACCCAATTTAATTTGGACTAAATAAATTAATATTAATTAATTAT
75580919 GGAAATAGTG
Statistics
Matches: 325, Mismatches: 48, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
436 2 0.01
437 87 0.27
438 108 0.33
439 40 0.12
440 82 0.25
441 6 0.02
ACGTcount: A:0.39, C:0.12, G:0.13, T:0.36
Consensus pattern (440 bp):
CTGAAAACACAAAAATATACACACTTTTTCATACCCTTTTTAACTTAAAATCATACAGTTTCGAT
AAAATTCTTATCGAAAAATAATTAATTTTTATAAAATAATTAAAATTACACTTAAAATATGAACA
TGATGAATTTTAATTAATTTTATAATTAATTTTGAGTAATTTTGATCATTTTTCGACAAGATTGC
ACAAAGGGAAAAAAAAGACTCGGCAGACACTGCTAGAAGCACAAAACCGAGAAGCAATTTGAAGT
ATAAAGGCAAATTAATTTCCAGCCTAAGACGGTCCAATTATGTGTATTAATTGATAATATAATTA
ATTTTAATTTATACCCAATTTAATTTGGACTAAATAAATTAATATTAATTAATTATAAAAAAAGT
GGTCTAGTGGAGCTGAATCGAGTGAACCGAACCGACCAAGAAGTGGACAG
Found at i:75582760 original size:18 final size:19
Alignment explanation
Indices: 75582737--75582775 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
75582727 CATTCACATC
75582737 TTTTCTCTCTTC-TCTCCA
1 TTTTCTCTCTTCTTCTCCA
*
75582755 TTTTCTTTCTTCTTCTCCA
1 TTTTCTCTCTTCTTCTCCA
75582774 TT
1 TT
75582776 CCAAATTCCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.05, C:0.33, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTCTCTCTTCTTCTCCA
Found at i:75585493 original size:19 final size:19
Alignment explanation
Indices: 75585469--75585508 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
75585459 TTATTTTTTT
* *
75585469 ATTAGAATCGAAAAGTTTA
1 ATTAGAATAGAAAAGTATA
75585488 ATTAGAATAGAAAAGTATA
1 ATTAGAATAGAAAAGTATA
75585507 AT
1 AT
75585509 AAAAGTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.03, G:0.15, T:0.30
Consensus pattern (19 bp):
ATTAGAATAGAAAAGTATA
Found at i:75586732 original size:26 final size:26
Alignment explanation
Indices: 75586703--75586795 Score: 81
Period size: 23 Copynumber: 3.8 Consensus size: 26
75586693 AAATTACAAG
*
75586703 TTATTAGCAATTAATATTAATTTATA
1 TTATTAGTAATTAATATTAATTTATA
* * **
75586729 TTATTTGTTATTAATATTAA-GAATA
1 TTATTAGTAATTAATATTAATTTATA
*
75586754 TTA--AGTAATTAATAAT-ATTTATA
1 TTATTAGTAATTAATATTAATTTATA
*
75586777 TTATTA-T-ATTTATATTAAT
1 TTATTAGTAATTAATATTAAT
75586796 ATATTTCTAT
Statistics
Matches: 51, Mismatches: 12, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
22 1 0.02
23 23 0.45
24 3 0.06
25 7 0.14
26 17 0.33
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (26 bp):
TTATTAGTAATTAATATTAATTTATA
Found at i:75586783 original size:8 final size:8
Alignment explanation
Indices: 75586772--75586932 Score: 65
Period size: 8 Copynumber: 21.8 Consensus size: 8
75586762 TTAATAATAT
75586772 TTATATTA
1 TTATATTA
75586780 TTATA-T-
1 TTATATTA
75586786 TTATATTA
1 TTATATTA
*
75586794 ATATATT-
1 TTATATTA
75586801 TCTAT-TTA
1 T-TATATTA
75586809 -TA-A--A
1 TTATATTA
75586813 TCTATATT-
1 T-TATATTA
75586821 TCTATATTA
1 T-TATATTA
75586830 TT-TATT-
1 TTATATTA
*
75586836 TTATTATTC
1 TTA-TATTA
*
75586845 TATCTATTA
1 T-TATATTA
75586854 TTATATTA
1 TTATATTA
*
75586862 -TCTATTA
1 TTATATTA
*
75586869 -TCTATTA
1 TTATATTA
*
75586876 TTATGTTA
1 TTATATTA
75586884 TCTAT-TTA
1 T-TATATTA
75586892 -TATATTA
1 TTATATTA
75586899 TT-T-TTA
1 TTATATTA
75586905 -TATATTA
1 TTATATTA
75586912 -T-TATTA
1 TTATATTA
75586918 TATATATTA
1 T-TATATTA
75586927 TTATAT
1 TTATAT
75586933 ATATATTTAT
Statistics
Matches: 121, Mismatches: 8, Indels: 48
0.68 0.05 0.27
Matches are distributed among these distances:
4 1 0.01
5 1 0.01
6 23 0.19
7 30 0.25
8 49 0.40
9 16 0.13
10 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.61
Consensus pattern (8 bp):
TTATATTA
Found at i:75586842 original size:3 final size:3
Alignment explanation
Indices: 75586825--75586930 Score: 69
Period size: 3 Copynumber: 34.0 Consensus size: 3
75586815 TATATTTCTA
*
75586825 TAT TATT TAT T-T TAT TAT T-C TAT CTAT TAT TA- TAT TAT CTAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT
* *
75586870 CTAT TAT TA- TGT TAT CTATT TAT ATAT TAT TTT TAT ATAT TAT TAT
1 -TAT TAT TAT TAT TAT -TA-T TAT -TAT TAT TAT TAT -TAT TAT TAT
75586916 TA- TAT ATAT TAT TAT
1 TAT TAT -TAT TAT TAT
75586931 ATATATATTT
Statistics
Matches: 83, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
2 8 0.10
3 49 0.59
4 25 0.30
5 1 0.01
ACGTcount: A:0.31, C:0.05, G:0.01, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:75586843 original size:15 final size:15
Alignment explanation
Indices: 75586769--75586960 Score: 50
Period size: 15 Copynumber: 13.1 Consensus size: 15
75586759 TAATTAATAA
*
75586769 TATTTATATTATTA-
1 TATTTATTTTATTAT
* *
75586783 TATTTATATTAATA-
1 TATTTATTTTATTAT
* * *
75586797 TATTTCTATTTATAAA
1 TATTTAT-TTTATTAT
* *
75586813 TCTATATTTCTA-TAT
1 TATTTATTT-TATTAT
75586828 TATTTATTTTATTA-
1 TATTTATTTTATTAT
* *
75586842 T-TCTA-TCTATTAT
1 TATTTATTTTATTAT
*
75586855 TATATTA-TCTATTAT
1 TAT-TTATTTTATTAT
* *
75586870 CTA-TTATTATGTTAT
1 -TATTTATTTTATTAT
*
75586885 CTATTTA-TATATTAT
1 -TATTTATTTTATTAT
75586900 T-TTTATATATTATTAT
1 TATTTAT-T-TTATTAT
* *
75586916 TATATATATTATTA-
1 TATTTATTTTATTAT
*
75586930 TATATATATTTATT-T
1 TATTTAT-TTTATTAT
*
75586945 CTATTTA-GTTATTAT
1 -TATTTATTTTATTAT
75586960 T
1 T
75586961 TAGATTTTAG
Statistics
Matches: 136, Mismatches: 24, Indels: 36
0.69 0.12 0.18
Matches are distributed among these distances:
12 6 0.04
13 8 0.06
14 40 0.29
15 55 0.40
16 23 0.17
17 4 0.03
ACGTcount: A:0.32, C:0.05, G:0.01, T:0.62
Consensus pattern (15 bp):
TATTTATTTTATTAT
Found at i:75586913 original size:58 final size:59
Alignment explanation
Indices: 75586828--75586961 Score: 145
Period size: 58 Copynumber: 2.3 Consensus size: 59
75586818 ATTTCTATAT
* *
75586828 TATTTATT-TTATTATTCTATCTATTATTA-TATTATCTATTATCTAT-TAT-TATGTTA-TC
1 TATTTATTATTATT-TTCTATATATTATTATTA-TATATATTAT-TATATATATAT-TTATTC
75586886 TATTTATATATTATTTT-TATATATTATTATTATATATATTATTATATATATATTTATTTC
1 TATTTAT-TATTATTTTCTATATATTATTATTATATATATTATTATATATATATTTA-TTC
75586946 TATTTAGTTATTATTT
1 TATTTA-TTATTATTT
75586962 AGATTTTAGA
Statistics
Matches: 66, Mismatches: 2, Indels: 14
0.80 0.02 0.17
Matches are distributed among these distances:
57 3 0.05
58 33 0.50
59 8 0.12
60 21 0.32
61 1 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.63
Consensus pattern (59 bp):
TATTTATTATTATTTTCTATATATTATTATTATATATATTATTATATATATATTTATTC
Found at i:75586931 original size:12 final size:12
Alignment explanation
Indices: 75586773--75586936 Score: 92
Period size: 12 Copynumber: 13.4 Consensus size: 12
75586763 TAATAATATT
75586773 TATATTATTATA
1 TATATTATTATA
*
75586785 TTTA-TATTAATA
1 TATATTATT-ATA
*
75586797 TATTTCTATT-TA
1 TATAT-TATTATA
* * *
75586809 TAAATCTATATTTC
1 TATAT-TAT-TATA
75586823 TATATTATT-TA
1 TATATTATTATA
75586834 T-T-TTATTAT-
1 TATATTATTATA
*
75586843 TCTATCTATTAT-
1 TATAT-TATTATA
75586855 TATATTATCTATTA
1 TATATTAT-TA-TA
* *
75586869 TCTATTATTATG
1 TATATTATTATA
75586881 T-TATCTATTTATA
1 TATAT-TA-TTATA
*
75586894 TATTATTTTTATA
1 TA-TATTATTATA
75586907 TATTATTATTATA
1 TA-TATTATTATA
75586920 TATATTATTATA
1 TATATTATTATA
75586932 TATAT
1 TATAT
75586937 ATTTATTTCT
Statistics
Matches: 122, Mismatches: 14, Indels: 32
0.73 0.08 0.19
Matches are distributed among these distances:
9 6 0.05
10 3 0.02
11 13 0.11
12 49 0.40
13 31 0.25
14 17 0.14
15 3 0.02
ACGTcount: A:0.34, C:0.05, G:0.01, T:0.61
Consensus pattern (12 bp):
TATATTATTATA
Found at i:75586942 original size:12 final size:12
Alignment explanation
Indices: 75586886--75586942 Score: 55
Period size: 11 Copynumber: 4.6 Consensus size: 12
75586876 TTATGTTATC
75586886 TATTTATATAT-
1 TATTTATATATA
*
75586897 TATTTTTATATA
1 TATTTATATATA
75586909 T-TATTATTATATA
1 TAT-TTA-TATATA
75586922 TATTATTATATATA
1 TA-T-TTATATATA
75586936 TATTTAT
1 TATTTAT
75586943 TTCTATTTAG
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 11 0.28
12 7 0.18
13 8 0.21
14 8 0.21
15 5 0.13
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTTATATATA
Found at i:75586962 original size:11 final size:11
Alignment explanation
Indices: 75586946--75587003 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
75586936 TATTTATTTC
75586946 TATTTAGTTAT
1 TATTTAGTTAT
75586957 TATTTAG--A-
1 TATTTAGTTAT
75586965 T-TTTAGATT-T
1 TATTTAG-TTAT
*
75586975 CTATTTACTTAT
1 -TATTTAGTTAT
75586987 TATTTAGTTAT
1 TATTTAGTTAT
75586998 TATTTA
1 TATTTA
75587004 TATTTAGTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 14
0.70 0.04 0.26
Matches are distributed among these distances:
7 5 0.13
8 1 0.03
9 1 0.03
11 26 0.68
12 5 0.13
ACGTcount: A:0.28, C:0.03, G:0.07, T:0.62
Consensus pattern (11 bp):
TATTTAGTTAT
Found at i:75587052 original size:31 final size:32
Alignment explanation
Indices: 75586988--75587078 Score: 89
Period size: 31 Copynumber: 2.8 Consensus size: 32
75586978 TTTACTTATT
**
75586988 ATTTAGTTATTATTTATATTT-AGTATATTTAGA
1 ATTTA-TTATTATTTA-ATTTAAGTATAAATAGA
75587021 ATTTATTATTATTTAATTTAAGT-TAAATAGA
1 ATTTATTATTATTTAATTTAAGTATAAATAGA
** *
75587052 A-AAATTAATAATTTAATTTAAGTATAA
1 ATTTATT-ATTATTTAATTTAAGTATAA
75587079 TTAAAATAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
30 3 0.06
31 26 0.52
32 16 0.32
33 5 0.10
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.51
Consensus pattern (32 bp):
ATTTATTATTATTTAATTTAAGTATAAATAGA
Found at i:75588494 original size:19 final size:19
Alignment explanation
Indices: 75588434--75588529 Score: 110
Period size: 19 Copynumber: 5.1 Consensus size: 19
75588424 CTATATTATT
* *
75588434 ATATTATTAATATTATTTAT
1 ATATTATTAATA-TATTAAA
75588454 ATATTATTAA-ATATTATTAA
1 ATATTATTAATATATTA--AA
75588474 ATATTATTAATATATTAAA
1 ATATTATTAATATATTAAA
75588493 ATATTATTAATATATTAAA
1 ATATTATTAATATATTAAA
*
75588512 AT-TTA-T-ATATATTTAA
1 ATATTATTAATATATTAAA
75588528 AT
1 AT
75588530 TATATATTGA
Statistics
Matches: 70, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
16 11 0.16
17 1 0.01
18 7 0.10
19 24 0.34
20 21 0.30
21 6 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (19 bp):
ATATTATTAATATATTAAA
Found at i:75588535 original size:17 final size:16
Alignment explanation
Indices: 75588483--75588536 Score: 65
Period size: 19 Copynumber: 3.2 Consensus size: 16
75588473 AATATTATTA
75588483 ATATATTAAAATATTATT
1 ATATATTAAAAT-TTA-T
75588501 AATATATTAAAATTTAT
1 -ATATATTAAAATTTAT
*
75588518 ATATATTTAAA-TTAT
1 ATATATTAAAATTTAT
75588533 ATAT
1 ATAT
75588537 TGAAATGATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
15 8 0.24
16 10 0.29
17 1 0.03
18 3 0.09
19 12 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATATTAAAATTTAT
Found at i:75590575 original size:40 final size:40
Alignment explanation
Indices: 75590521--75590638 Score: 209
Period size: 40 Copynumber: 3.0 Consensus size: 40
75590511 CGGATGTAAC
* *
75590521 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
75590561 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTCATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
75590601 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
75590639 TTTTTTTCCA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:75595085 original size:7 final size:7
Alignment explanation
Indices: 75595062--75595110 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
75595052 TATACTAGTA
75595062 TTAATATT
1 TTAA-ATT
75595070 TTAAA-T
1 TTAAATT
75595076 TTAAATT
1 TTAAATT
75595083 TTAAATT
1 TTAAATT
75595090 TT-AA--
1 TTAAATT
*
75595094 TTAAATA
1 TTAAATT
75595101 TTAAATT
1 TTAAATT
75595108 TTA
1 TTA
75595111 TTATTATTCG
Statistics
Matches: 36, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
4 2 0.06
5 2 0.06
6 8 0.22
7 20 0.56
8 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (7 bp):
TTAAATT
Found at i:75595085 original size:13 final size:13
Alignment explanation
Indices: 75595062--75595110 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
75595052 TATACTAGTA
75595062 TTAATATTTTAAAT
1 TTAA-ATTTTAAAT
75595076 TTAAATTTTAAAT
1 TTAAATTTTAAAT
*
75595089 TTTAA--TTAAAT
1 TTAAATTTTAAAT
75595100 ATTAAATTTTA
1 -TTAAATTTTA
75595111 TTATTATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 6 0.20
12 4 0.13
13 13 0.43
14 7 0.23
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTAAATTTTAAAT
Found at i:75595099 original size:18 final size:19
Alignment explanation
Indices: 75595060--75595110 Score: 68
Period size: 18 Copynumber: 2.6 Consensus size: 19
75595050 TTTATACTAG
75595060 TATTAATATTTTAAATTTAAA
1 TATTAA-ATTTT-AATTTAAA
*
75595081 TTTTAAATTTTAA-TTAAA
1 TATTAAATTTTAATTTAAA
75595099 TATTAAATTTTA
1 TATTAAATTTTA
75595111 TTATTATTCG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 16 0.57
19 2 0.07
20 5 0.18
21 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAAATTTTAATTTAAA
Found at i:75596405 original size:43 final size:43
Alignment explanation
Indices: 75596293--75596443 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
75596283 CAATGTCAAC
** *
75596293 GTCCCAAACGTGGTCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCCAAACGTGGTCTTACACATAAATCAAATA-CGATGCCAAT
* * *
75596336 GTCCCAGACAG-GGTCTTATAC-GAAATCAAATACGATGCCAAT
1 GTCCCAAAC-GTGGTCTTACACATAAATCAAATACGATGCCAAT
* * *
75596378 GTCCCAGACGTGGTCTTACACATAAATCATAAGT-CAATGTCAAT
1 GTCCCAAACGTGGTCTTACACATAAATCA-AA-TACGATGCCAAT
*
75596422 GTGCCAAACGTGGTCTTACACA
1 GTCCCAAACGTGGTCTTACACA
75596444 ATAACACATA
Statistics
Matches: 91, Mismatches: 11, Indels: 11
0.81 0.10 0.10
Matches are distributed among these distances:
41 1 0.01
42 27 0.30
43 31 0.34
44 31 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
GTCCCAAACGTGGTCTTACACATAAATCAAATACGATGCCAAT
Found at i:75602346 original size:29 final size:29
Alignment explanation
Indices: 75602304--75602363 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
75602294 AATCAACAAG
75602304 TTAGTCATAATAATGATGTACCAAGTAAT
1 TTAGTCATAATAATGATGTACCAAGTAAT
75602333 TTAGTCATAATAATGATGTACCAAGTAAT
1 TTAGTCATAATAATGATGTACCAAGTAAT
75602362 TT
1 TT
75602364 GTCTTAGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (29 bp):
TTAGTCATAATAATGATGTACCAAGTAAT
Found at i:75602956 original size:24 final size:24
Alignment explanation
Indices: 75602912--75602970 Score: 59
Period size: 24 Copynumber: 2.4 Consensus size: 24
75602902 GATTGCATTT
*
75602912 TATAGATTTTCATACCATCATCAAA
1 TATAGATTATCATACCATCAT-AAA
75602937 TATA-ATTATCATA-CATTCATAAA
1 TATAGATTATCATACCA-TCATAAA
75602960 TCATAGGATTA
1 T-ATA-GATTA
75602971 GACATATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 6 0.21
24 15 0.52
25 4 0.14
26 4 0.14
ACGTcount: A:0.42, C:0.15, G:0.05, T:0.37
Consensus pattern (24 bp):
TATAGATTATCATACCATCATAAA
Found at i:75613363 original size:18 final size:18
Alignment explanation
Indices: 75613340--75613374 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
75613330 AGTGCGAGTC
*
75613340 ACACGGGCGTGTGGGCCA
1 ACACGGGCATGTGGGCCA
75613358 ACACGGGCATGTGGGCC
1 ACACGGGCATGTGGGCC
75613375 CGTAGTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.29, G:0.43, T:0.11
Consensus pattern (18 bp):
ACACGGGCATGTGGGCCA
Found at i:75616510 original size:42 final size:43
Alignment explanation
Indices: 75616398--75616519 Score: 144
Period size: 43 Copynumber: 2.9 Consensus size: 43
75616388 CACCATACCA
* *
75616398 ATGCCAA-ATCCCAGATATGGTCTTACATG-GGATCTCATATCG
1 ATGCCAATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* *
75616440 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATCG
1 ATGCCAATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* *
75616483 ATGTC-ATATCCCAAATATGGTCTTACACGTAA-TCTCA
1 ATGCCAATATCCCAGATATGGTCTTACACG-AAGTCTCA
75616520 AATAACCCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 33 0.48
43 35 0.51
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:75623170 original size:39 final size:40
Alignment explanation
Indices: 75623075--75623336 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
75623065 TTGAATGCTG
*
75623075 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
75623113 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
75623154 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
75623193 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
75623232 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
75623271 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
75623310 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75623337 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:75631176 original size:39 final size:40
Alignment explanation
Indices: 75631081--75631340 Score: 319
Period size: 39 Copynumber: 6.7 Consensus size: 40
75631071 TTGAATGATG
*
75631081 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
75631119 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
75631160 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAA-
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
75631198 TCCGGGCTAAG--CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
75631236 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
75631275 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
75631314 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75631341 AACGAGGAGC
Statistics
Matches: 199, Mismatches: 11, Indels: 21
0.86 0.05 0.09
Matches are distributed among these distances:
37 26 0.13
38 22 0.11
39 80 0.40
40 59 0.30
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:75631228 original size:76 final size:78
Alignment explanation
Indices: 75631081--75631340 Score: 329
Period size: 76 Copynumber: 3.3 Consensus size: 78
75631071 TTGAATGATG
* * *
75631081 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGACAATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTA-ATCCGGGCTAAG-TCCGAAGGCAT
75631143 TTGTGCGAGATACTAAT
62 TTGTGCGAGATACTAAT
75631160 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAG-CCGAAGGCATTTGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAGTCCGAAGGCATTTGT
75631223 GCGAGATACTAAT
66 GCGAGATACTAAT
* *
75631236 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACT-AATCCGGGCTAAGT-CCGAAGGCATTT
75631300 GTGCGA-ATTACT-AT
64 GTGCGAGA-TACTAAT
* *
75631314 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
75631341 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 7, Indels: 17
0.87 0.04 0.09
Matches are distributed among these distances:
76 62 0.38
77 12 0.07
78 23 0.14
79 45 0.27
80 22 0.13
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATCCGGGCTAAGTCCGAAGGCATTTGT
GCGAGATACTAAT
Found at i:75648893 original size:12 final size:11
Alignment explanation
Indices: 75648876--75648948 Score: 87
Period size: 11 Copynumber: 6.7 Consensus size: 11
75648866 TTCCAATCAC
75648876 TTTTTTTTGAA
1 TTTTTTTTGAA
75648887 TTTTTTTTGAA
1 TTTTTTTTGAA
*
75648898 -TTTTTTCGAA
1 TTTTTTTTGAA
*
75648908 ATTTTTTTGAA
1 TTTTTTTTGAA
*
75648919 TTTTTTTCG-A
1 TTTTTTTTGAA
*
75648929 TTTTGTTTTCAA
1 TTTT-TTTTGAA
75648941 TTTTTTTT
1 TTTTTTTT
75648949 TCAACTTCTT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
10 14 0.26
11 34 0.64
12 5 0.09
ACGTcount: A:0.16, C:0.04, G:0.08, T:0.71
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:75648943 original size:32 final size:31
Alignment explanation
Indices: 75648877--75648948 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 31
75648867 TCCAATCACT
*
75648877 TTTTTTTGAATTTTTTTTGAATTTTTTCGAAA
1 TTTTTTTGAATTTTTTTCGAATTTTTTC-AAA
* *
75648909 TTTTTTTGAATTTTTTTCGATTTTGTTTTCAAT
1 TTTTTTTGAATTTTTTTCGA-ATT-TTTTCAAA
75648942 TTTTTTT
1 TTTTTTT
75648949 TCAACTTCTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
32 19 0.54
33 11 0.31
34 5 0.14
ACGTcount: A:0.17, C:0.04, G:0.08, T:0.71
Consensus pattern (31 bp):
TTTTTTTGAATTTTTTTCGAATTTTTTCAAA
Found at i:75648947 original size:22 final size:22
Alignment explanation
Indices: 75648876--75648947 Score: 94
Period size: 21 Copynumber: 3.3 Consensus size: 22
75648866 TTCCAATCAC
*
75648876 TTTTTTTTGAATTTTTTTTGAA
1 TTTTTTTCGAATTTTTTTTGAA
*
75648898 -TTTTTTCGAAATTTTTTTGAA
1 TTTTTTTCGAATTTTTTTTGAA
*
75648919 TTTTTTTCG-ATTTTGTTTTCAA
1 TTTTTTTCGAATTTT-TTTTGAA
75648941 TTTTTTT
1 TTTTTTT
75648948 TTCAACTTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
21 23 0.52
22 21 0.48
ACGTcount: A:0.17, C:0.04, G:0.08, T:0.71
Consensus pattern (22 bp):
TTTTTTTCGAATTTTTTTTGAA
Found at i:75648949 original size:12 final size:12
Alignment explanation
Indices: 75648919--75648963 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
75648909 TTTTTTTGAA
*
75648919 TTTTTTTCGATT
1 TTTTTTTCAATT
*
75648931 TTGTTTTCAATT
1 TTTTTTTCAATT
75648943 TTTTTTTCAACTT
1 TTTTTTTCAA-TT
75648956 CTTTTTTT
1 -TTTTTTT
75648964 TAAACTACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 19 0.68
13 2 0.07
14 7 0.25
ACGTcount: A:0.11, C:0.11, G:0.04, T:0.73
Consensus pattern (12 bp):
TTTTTTTCAATT
Found at i:75649752 original size:22 final size:20
Alignment explanation
Indices: 75649713--75649752 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
75649703 GCTGGAACCT
75649713 TCCTTGAAGATTCTTGAACG
1 TCCTTGAAGATTCTTGAACG
*
75649733 TCCTTGGAAGCTTCCTTGAA
1 TCCTT-GAAGATT-CTTGAA
75649753 GTTTCCAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 6 0.35
22 6 0.35
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.35
Consensus pattern (20 bp):
TCCTTGAAGATTCTTGAACG
Found at i:75650418 original size:27 final size:26
Alignment explanation
Indices: 75650371--75650426 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 26
75650361 GCAGCAACTA
75650371 ATTAAATTTGTCTCTAAACTAGACAC
1 ATTAAATTTGTCTCTAAACTAGACAC
75650397 ATTAAATTGATGTC-CTAAACTAGACAC
1 ATTAAATT--TGTCTCTAAACTAGACAC
75650424 ATT
1 ATT
75650427 TAAGCTATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 8 0.29
27 16 0.57
28 4 0.14
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (26 bp):
ATTAAATTTGTCTCTAAACTAGACAC
Found at i:75652403 original size:6 final size:6
Alignment explanation
Indices: 75652392--75652431 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
75652382 TTTTCACTTA
* *
75652392 TTTCTT TTTCTT TTTCAT TTTCAT TTTCAT TTTCAT TTTC
1 TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTCAT TTTC
75652432 TCTTCTCTCG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.72
Consensus pattern (6 bp):
TTTCAT
Found at i:75655494 original size:27 final size:27
Alignment explanation
Indices: 75655463--75655557 Score: 111
Period size: 27 Copynumber: 3.5 Consensus size: 27
75655453 TTAGTTTACC
** *
75655463 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACCCAAATACCCTCGATTTATA
*
75655490 AAATTA-CCAAAGTACCCCCGATTTATA
1 AAATTACCCAAA-TACCCTCGATTTATA
* *
75655517 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCCAAATACCCTCGATTTATA
*
75655544 AAATTACCGAAATA
1 AAATTACCCAAATA
75655558 AGATAGAATT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.05
27 50 0.86
28 5 0.09
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AAATTACCCAAATACCCTCGATTTATA
Found at i:75655592 original size:27 final size:27
Alignment explanation
Indices: 75655562--75655641 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
75655552 GAAATAAGAT
*
75655562 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCAATTTAC
*
75655589 AGAATTA-CAGTTTTACCCTCAATTTAT
1 AGAATTACCA-TTTTACCCTCAATTTAC
*
75655616 AGAATTACCATTTTACCCTTAATTTA
1 AGAATTACCATTTTACCCTCAATTTA
75655642 AAAAATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCAATTTAC
Found at i:75655683 original size:27 final size:27
Alignment explanation
Indices: 75655653--75655714 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
75655643 AAAATTATTG
* * *
75655653 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTAACAAAATTACCA
*
75655680 AAATACCCTCGATTAATAAAATTACCA
1 AAATACCCTCGATTAACAAAATTACCA
75655707 AAATACCC
1 AAATACCC
75655715 CTGATTTGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.45, C:0.24, G:0.05, T:0.26
Consensus pattern (27 bp):
AAATACCCTCGATTAACAAAATTACCA
Found at i:75655762 original size:27 final size:27
Alignment explanation
Indices: 75655732--75655844 Score: 102
Period size: 27 Copynumber: 4.0 Consensus size: 27
75655722 GTGAAATGAA
75655732 TGAAATACCCTTGTAGGGTAGAATTAC
1 TGAAATACCCTTGTAGGGTAGAATTAC
*
75655759 TGAAATATCCCTGTAGGGTTGGGTAGAATTA-
1 TGAAATA-CCCT-T---GTAGGGTAGAATTAC
* *
75655790 TCAAAATACCCCTGTAGGGTAGAATTAC
1 T-GAAATACCCTTGTAGGGTAGAATTAC
* * * *
75655818 CGAGATACCCTTGTGGGGTAAAATTAC
1 TGAAATACCCTTGTAGGGTAGAATTAC
75655845 CATTTTGCCC
Statistics
Matches: 69, Mismatches: 10, Indels: 14
0.74 0.11 0.15
Matches are distributed among these distances:
27 41 0.59
28 4 0.06
29 1 0.01
30 1 0.01
31 4 0.06
32 18 0.26
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (27 bp):
TGAAATACCCTTGTAGGGTAGAATTAC
Found at i:75655784 original size:32 final size:32
Alignment explanation
Indices: 75655747--75655809 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
75655737 TACCCTTGTA
* *
75655747 GGGTAGAATTA-CTGAAATATCCCTGTAGGGTT
1 GGGTAGAATTATC-AAAATACCCCTGTAGGGTT
75655779 GGGTAGAATTATCAAAATACCCCTGTAGGGT
1 GGGTAGAATTATCAAAATACCCCTGTAGGGT
75655810 AGAATTACCG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 27 0.96
33 1 0.04
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (32 bp):
GGGTAGAATTATCAAAATACCCCTGTAGGGTT
Found at i:75656272 original size:6 final size:6
Alignment explanation
Indices: 75656240--75656318 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
75656230 TTGCATTCAC
* *
75656240 ATTCTG ATTTTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
*
75656289 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
75656319 AGTTTTGATA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 3 0.05
6 50 0.82
7 6 0.10
8 2 0.03
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:75656275 original size:31 final size:31
Alignment explanation
Indices: 75656240--75656318 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
75656230 TTGCATTCAC
* * *
75656240 ATTCTGATTTTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
75656271 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
75656302 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
75656319 AGTTTTGATA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:75656327 original size:18 final size:18
Alignment explanation
Indices: 75656240--75656318 Score: 81
Period size: 19 Copynumber: 4.3 Consensus size: 18
75656230 TTGCATTCAC
*
75656240 ATTCTGATTTTGATTCTG
1 ATTCTGATTCTGATTCTG
*
75656258 -TTACTTGATACTGATTCTG
1 ATT-C-TGATTCTGATTCTG
*
75656277 ATTCTGATTCTG-TCACCTG
1 ATTCTGATTCTGAT--TCTG
75656296 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
75656314 ATTCT
1 ATTCT
75656319 AGTTTTGATA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
17 3 0.06
18 16 0.32
19 28 0.56
20 3 0.06
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:75658342 original size:10 final size:10
Alignment explanation
Indices: 75658329--75658364 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
75658319 GAGCTCCGTC
75658329 CAGCTCAATT
1 CAGCTCAATT
75658339 CAGCTCAATT
1 CAGCTCAATT
* *
75658349 GAGCTCATTT
1 CAGCTCAATT
75658359 CAGCTC
1 CAGCTC
75658365 GTTTGAGCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.31
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:75658353 original size:20 final size:20
Alignment explanation
Indices: 75658330--75658376 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
75658320 AGCTCCGTCC
75658330 AGCTCAATTCAGCTCAATTG
1 AGCTCAATTCAGCTCAATTG
* **
75658350 AGCTCATTTCAGCTCGTTTG
1 AGCTCAATTCAGCTCAATTG
75658370 AGCTCAA
1 AGCTCAA
75658377 CCGAGCTTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (20 bp):
AGCTCAATTCAGCTCAATTG
Found at i:75662153 original size:12 final size:12
Alignment explanation
Indices: 75662136--75662179 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
75662126 CTCTCTTAAA
*
75662136 CTCTTTTTCATT
1 CTCTTTTTCAAT
*
75662148 CTCTTTTTCAAC
1 CTCTTTTTCAAT
* *
75662160 CTCATTTTCACT
1 CTCTTTTTCAAT
75662172 CTCTTTTT
1 CTCTTTTT
75662180 GTTCTTTTTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.11, C:0.30, G:0.00, T:0.59
Consensus pattern (12 bp):
CTCTTTTTCAAT
Found at i:75663219 original size:12 final size:12
Alignment explanation
Indices: 75663191--75663223 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
75663181 AATTTAACAC
*
75663191 ACTTTTTTTTGA
1 ACTTTTTTTCGA
75663203 A-TTTTTTTCGA
1 ACTTTTTTTCGA
75663214 ACTTTTTTTC
1 ACTTTTTTTC
75663224 TTTCAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (12 bp):
ACTTTTTTTCGA
Found at i:75671672 original size:28 final size:28
Alignment explanation
Indices: 75671632--75671696 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
75671622 ATGTACTAGA
*
75671632 ATACCCCTATGTATGAAAAATTACCATT
1 ATACCCCTATGTATGAAAAATGACCATT
* *
75671660 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGAAAAATGACCATT
75671688 ATACCCCTA
1 ATACCCCTA
75671697 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.35, C:0.26, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGAAAAATGACCATT
Found at i:75671861 original size:27 final size:27
Alignment explanation
Indices: 75671802--75671891 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 27
75671792 AGGAAGCGTC
75671802 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
75671830 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
* *
75671857 TTGGTGGCACTGACACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
75671886 CTGGTG
1 CTGGTG
75671892 ACTCTGTCAT
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 21 0.40
28 25 0.48
29 6 0.12
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:75674890 original size:47 final size:47
Alignment explanation
Indices: 75674827--75675255 Score: 714
Period size: 47 Copynumber: 9.1 Consensus size: 47
75674817 GAAATGATAG
*
75674827 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75674874 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
75674923 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
75674970 TAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75675017 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
75675064 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75675111 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75675158 TAAGTCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
75675205 TAAGGCGTAATGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75675252 TAAG
1 TAAG
75675256 TCCCGAAGGG
Statistics
Matches: 361, Mismatches: 19, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 315 0.87
49 46 0.13
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75675430 original size:47 final size:47
Alignment explanation
Indices: 75675371--75675609 Score: 352
Period size: 47 Copynumber: 5.1 Consensus size: 47
75675361 GAAATGATAG
* *
75675371 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75675418 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75675465 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
75675512 TAAGGCGTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * * *
75675559 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATTTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
75675606 TAAG
1 TAAG
75675610 TCCCGAAGGG
Statistics
Matches: 174, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 174 1.00
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:75683006 original size:12 final size:13
Alignment explanation
Indices: 75682978--75683010 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
75682968 TTATTTCTTT
75682978 TTCTCCATCTACC
1 TTCTCCATCTACC
*
75682991 TTCTCC-TCTTCC
1 TTCTCCATCTACC
75683003 TTCTCCAT
1 TTCTCCAT
75683011 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:75685321 original size:29 final size:29
Alignment explanation
Indices: 75685258--75685326 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
75685248 TCAAGGTAAG
*
75685258 CGCACACTTACTGCCATGTACTTTAAACT
1 CGCACACTTACTGCCATGCACTTTAAACT
* * **
75685287 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTACTGCCATGCACTTT-AAACT
75685316 CGCACACTTAC
1 CGCACACTTAC
75685327 CTTTTCCGCT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
28 3 0.09
29 29 0.91
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTACTGCCATGCACTTTAAACT
Found at i:75685495 original size:29 final size:29
Alignment explanation
Indices: 75685432--75685499 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
75685422 TAATCAACCG
75685432 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
75685461 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75685490 CGCACACTTA
1 CGCACACTTA
75685500 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75685669 original size:29 final size:29
Alignment explanation
Indices: 75685606--75685673 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
75685596 TAATCAACCG
*
75685606 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
75685635 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
75685664 CGCACACTTA
1 CGCACACTTA
75685674 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:75685814 original size:29 final size:30
Alignment explanation
Indices: 75685775--75685853 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
75685765 CTTAATAATC
75685775 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
75685805 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
75685834 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
75685854 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:75685847 original size:174 final size:174
Alignment explanation
Indices: 75685257--75685822 Score: 1060
Period size: 174 Copynumber: 3.3 Consensus size: 174
75685247 CTCAAGGTAA
*
75685257 GCGCACACTTACTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
1 GCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
*
75685322 CTTACCTTTTCCGCTGTACAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
66 CTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
*
75685387 AAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACC
131 AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACC
*
75685431 GCGCACACTTAGTGCCATGCACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
1 GCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
*
75685496 CTTACCTTTTCCGCTGTCCAAAATCGACTCGATAAAGTCGCACCCTTAATGTAAATAATTTATAG
66 CTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
75685561 AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACC
131 AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACC
75685605 GCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
1 GCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
*
75685670 CTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTCTAG
66 CTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
*
75685735 AAAATATATATTGGGTTCGCATACATAGTGCTTAATAATCAACC
131 AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACC
*
75685779 GCGCACACTTAGTGCCATGTACTTTAAACTCGCACACTTAGTGC
1 GCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGC
75685823 TGTACAATTT
Statistics
Matches: 382, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 382 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (174 bp):
GCGCACACTTAGTGCCATGTACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCACA
CTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATAG
AAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACC
Found at i:75690039 original size:79 final size:82
Alignment explanation
Indices: 75689928--75690112 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
75689918 GCTACTCGTT
* *
75689928 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
75689991 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
75690008 CAAATGCCTTCGAG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
75690071 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
75690088 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
75690113 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:75690112 original size:40 final size:40
Alignment explanation
Indices: 75689909--75690112 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
75689899 CGGAATTTAA
** *
75689909 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75689949 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75689989 CCGGATTTAGTAACTCGCACAAATGCCTTCGAG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
75690028 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
75690068 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
75690108 CCGGA
1 CCGGA
75690113 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:75692253 original size:93 final size:93
Alignment explanation
Indices: 75692141--75692312 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
75692131 CACCCATAAG
* *
75692141 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGCGAACTCGGACTCAACTC
75692205 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
75692234 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCA
75692299 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
75692313 TCAATCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGCGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:75692307 original size:46 final size:46
Alignment explanation
Indices: 75692134--75692309 Score: 218
Period size: 46 Copynumber: 3.8 Consensus size: 46
75692124 TGTAACCCAC
* *
75692134 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
75692180 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
75692230 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
75692273 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
75692310 TGCTCAATCA
Statistics
Matches: 112, Mismatches: 8, Indels: 20
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 62 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Done.