Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 237 of 295
Found at i:76077175 original size:27 final size:26
Alignment explanation
Indices: 76077138--76077249 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
76077128 AGCATGGCTG
* * *
76077138 CCAGAACAGATAATGAGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
76077164 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
76077192 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
76077219 CTAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
76077246 CCAG
1 CCAG
76077250 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:76079218 original size:17 final size:17
Alignment explanation
Indices: 76079188--76079220 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76079178 CTCTAATTCC
76079188 TTATCACCAGATGATAG
1 TTATCACCAGATGATAG
76079205 TTATCTACCA-ATGATA
1 TTATC-ACCAGATGATA
76079221 AGAATCTGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (17 bp):
TTATCACCAGATGATAG
Found at i:76092018 original size:53 final size:53
Alignment explanation
Indices: 76091933--76092036 Score: 163
Period size: 53 Copynumber: 2.0 Consensus size: 53
76091923 TTATAAGACT
* *
76091933 TAGACAAAATTGCACCATTCATAGAAGTATCTACTATCAAACTTGTATGTGCA
1 TAGACAAAATTGCACCATTCATAGAAGCATCTACCATCAAACTTGTATGTGCA
* * *
76091986 TAGACAAAATTGCACCATTCGTAGAAGCATCTACCATCTATCTTGTATGTG
1 TAGACAAAATTGCACCATTCATAGAAGCATCTACCATCAAACTTGTATGTG
76092037 TATTGAGACC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 46 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.31
Consensus pattern (53 bp):
TAGACAAAATTGCACCATTCATAGAAGCATCTACCATCAAACTTGTATGTGCA
Found at i:76096082 original size:6 final size:6
Alignment explanation
Indices: 76096071--76096227 Score: 137
Period size: 6 Copynumber: 25.8 Consensus size: 6
76096061 AACCAAAATG
*
76096071 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* * *
76096119 AGTAA-C AGAATC AGAATC AGAATT AGAATT AG-GTGAC AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
76096168 ACAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGAT- AGAATC
1 AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
76096217 AGAATC AGAAT
1 AGAATC AGAAT
76096228 GTGAATGCAA
Statistics
Matches: 126, Mismatches: 11, Indels: 28
0.76 0.07 0.17
Matches are distributed among these distances:
5 10 0.08
6 103 0.82
7 9 0.07
8 4 0.03
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:76096086 original size:30 final size:29
Alignment explanation
Indices: 76096050--76096227 Score: 161
Period size: 30 Copynumber: 6.1 Consensus size: 29
76096040 AAGAAACATT
* * *
76096050 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
76096080 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
76096110 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* * *
76096140 ATTAGAATTAGGTGACAGAATCAGAATCACA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
76096171 ATC---A--GTAACAGAATCAGAATCAGA
1 ATCAGAATTGTAACAGAATCAGAATCAGA
* *
76096195 ATCAGAATTACGTGATAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
76096226 AT
1 AT
76096228 GTGAATGCAA
Statistics
Matches: 122, Mismatches: 14, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
24 21 0.17
27 1 0.01
28 1 0.01
29 1 0.01
30 54 0.44
31 44 0.36
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:76096202 original size:55 final size:54
Alignment explanation
Indices: 76096071--76096223 Score: 195
Period size: 55 Copynumber: 2.8 Consensus size: 54
76096061 AACCAAAATG
* * *
76096071 AGAATCAGAATCAGAATCAGTAA-CAG-AATCAGAATCAGAATCAATATTAGTAAC
1 AGAATCAGAATCAGAATCAG-AATTAGTGA-CAGAATCAGAATCAATATCAGTAAC
*
76096125 AGAATCAGAATCAGAATTAGAATTAGGTGACAGAATCAGAATCACA-ATCAGTAAC
1 AGAATCAGAATCAGAATCAGAATTA-GTGACAGAATCAGAATCA-ATATCAGTAAC
*
76096180 AGAATCAGAATCAGAATCAGAATTACGTGATAGAATCAGAATCA
1 AGAATCAGAATCAGAATCAGAATTA-GTGACAGAATCAGAATCA
76096224 GAATGTGAAT
Statistics
Matches: 88, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
53 2 0.02
54 20 0.23
55 64 0.73
56 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (54 bp):
AGAATCAGAATCAGAATCAGAATTAGTGACAGAATCAGAATCAATATCAGTAAC
Found at i:76096382 original size:27 final size:26
Alignment explanation
Indices: 76096345--76096410 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
76096335 AGCATGGCTG
*
76096345 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
76096371 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
76096398 CCAGAATCAGATA
1 CCAGAA-CAGATA
76096411 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:76096415 original size:27 final size:27
Alignment explanation
Indices: 76096345--76096418 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
76096335 AGCATGGCTG
* *
76096345 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
76096371 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
76096398 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
76096419 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:76096425 original size:27 final size:27
Alignment explanation
Indices: 76096369--76096426 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
76096359 GTGACAGAGT
* * *
76096369 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
76096396 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
76096423 CACC
1 CACC
76096427 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:76096768 original size:27 final size:26
Alignment explanation
Indices: 76096729--76096812 Score: 114
Period size: 27 Copynumber: 3.2 Consensus size: 26
76096719 TCGATCGGTC
*
76096729 AACAGATATTGTGGCAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAA
*
76096755 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAA
* *
76096782 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAA
76096809 AACA
1 AACA
76096813 CTTCCTCCGT
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 45 0.85
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAA
Found at i:76097203 original size:54 final size:54
Alignment explanation
Indices: 76097010--76097205 Score: 234
Period size: 54 Copynumber: 3.6 Consensus size: 54
76097000 GGGGCAAAAT
* * ** *
76097010 GGTAAGTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGAGTATTTC
1 GGTAA-TTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
* * *
76097064 GGTATTTCTACCTTACAAGGGTATTTT-GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTC
* * * *
76097118 GGTAATTCTATCCTATAAGGGTATTTGAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
* *
76097172 GGAAATTCTACCCTACAGGGGTATTTTAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATT
76097206 TCACAATCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
53 3 0.03
54 116 0.97
55 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
Found at i:76097205 original size:27 final size:27
Alignment explanation
Indices: 76097009--76097205 Score: 209
Period size: 27 Copynumber: 7.3 Consensus size: 27
76096999 AGGGGCAAAA
* * *
76097009 TGGTAAGTT-TACCCCACAAGGGTATCT
1 TGGTAA-TTCTACCCTACAGGGGTATTT
* *
76097036 CGGTAATTCTACCCTACAGGAGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * * *
76097063 CGGTATTTCTACCTTACAAGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
76097090 TGATAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
* * *
76097117 TGGTAATTCTATCCTATAAGGGTA-TT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
76097143 TGAGTAATTCTACCCTATAGGGGTATTT
1 TG-GTAATTCTACCCTACAGGGGTATTT
* *
76097171 CGGAAATTCTACCCTACAGGGGTATTT
1 TGGTAATTCTACCCTACAGGGGTATTT
*
76097198 TAGTAATT
1 TGGTAATT
76097206 TCACAATCAA
Statistics
Matches: 141, Mismatches: 26, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.04
27 132 0.94
28 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
TGGTAATTCTACCCTACAGGGGTATTT
Found at i:76097240 original size:27 final size:27
Alignment explanation
Indices: 76097210--76097752 Score: 673
Period size: 27 Copynumber: 20.1 Consensus size: 27
76097200 GTAATTTCAC
* *
76097210 AATCAAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76097237 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76097264 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
76097291 AATCAAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76097318 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76097345 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76097372 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* **
76097399 AATCAAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76097426 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
76097453 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76097480 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
76097507 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
76097534 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76097561 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76097588 AA-CTGAGGGTAAAACGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
76097615 AATCAAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76097642 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
76097669 AATTGAGGGTAAAACGATAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76097696 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
76097723 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
76097750 AAT
1 AAT
76097753 TGGGAGTACT
Statistics
Matches: 443, Mismatches: 63, Indels: 20
0.84 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 434 0.98
28 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:76104508 original size:43 final size:42
Alignment explanation
Indices: 76104339--76104510 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 42
76104329 ACATATCGTA
* * *
76104339 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATGT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACG-AAACACATAT
76104382 CGAA-GCC-ACTGTCCCAGACAG-GGTCTTACACGAATTACA-AT-T
1 C-AATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAA--ACACATAT
* * * * * *
76104424 ACGATGCCGATGTCCTAGACATGGTCTTACTCGAAATCACATAT
1 -CAATGCCAACGTCCCAGACGTGGTCTTACACGAAA-CACATAT
*
76104468 CAATGCCAACGTCCCAGATGTGGTCTTACACGAGAACACATAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGA-AACACATAT
76104511 TAGAAATCCT
Statistics
Matches: 102, Mismatches: 14, Indels: 26
0.72 0.10 0.18
Matches are distributed among these distances:
41 1 0.01
42 8 0.08
43 84 0.82
44 9 0.09
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAAACACATAT
Found at i:76104539 original size:41 final size:41
Alignment explanation
Indices: 76104487--76104567 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
76104477 CGTCCCAGAT
76104487 GTGGTCTTACACGAGAACACATATTAGAAATCCTATGTCAC
1 GTGGTCTTACACGAGAACACATATTAGAAATCCTATGTCAC
76104528 GTGGTCTTACACGAGAACACATATTAGAAATCCTATGTCA
1 GTGGTCTTACACGAGAACACATATTAGAAATCCTATGTCA
76104568 TGACATATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (41 bp):
GTGGTCTTACACGAGAACACATATTAGAAATCCTATGTCAC
Found at i:76108273 original size:40 final size:40
Alignment explanation
Indices: 76108218--76108297 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
76108208 TACGAAGTTA
*
76108218 GTTGTGTAGTTAATTAGATTTTGGTTAAGTGAAATTGCAT
1 GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
76108258 GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
1 GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
76108298 AAATTAAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.04, G:0.25, T:0.44
Consensus pattern (40 bp):
GTTGTGTAGTTAATTAGATTTCGGTTAAGTGAAATTGCAT
Found at i:76112995 original size:18 final size:18
Alignment explanation
Indices: 76112972--76113013 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
76112962 TTTTTTATTA
* *
76112972 TCAAAAACCGATTATTTT
1 TCAAAAACAGAATATTTT
*
76112990 TCAAAAATAGAATATTTT
1 TCAAAAACAGAATATTTT
76113008 TCAAAA
1 TCAAAA
76113014 TTTAGATCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.36
Consensus pattern (18 bp):
TCAAAAACAGAATATTTT
Found at i:76114022 original size:28 final size:28
Alignment explanation
Indices: 76113991--76114065 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
76113981 TCAACATGTA
**
76113991 ATGCATGTTATATTTGATTCAGTGCTTT
1 ATGCATGTTATATTTGATTCAGCACTTT
*
76114019 ATGCATGTTATATTTGACTCAGCACTTT
1 ATGCATGTTATATTTGATTCAGCACTTT
* * *
76114047 ATTCATGGTATACTTGATT
1 ATGCATGTTATATTTGATT
76114066 AAGCTTAGTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.24, C:0.13, G:0.16, T:0.47
Consensus pattern (28 bp):
ATGCATGTTATATTTGATTCAGCACTTT
Found at i:76115468 original size:13 final size:13
Alignment explanation
Indices: 76115452--76115494 Score: 58
Period size: 13 Copynumber: 3.6 Consensus size: 13
76115442 AAAGAAAGAA
76115452 CTTGAAGAGATAT
1 CTTGAAGAGATAT
76115465 CTTG-A-AGA-A-
1 CTTGAAGAGATAT
76115474 CTTGAAGAGATAT
1 CTTGAAGAGATAT
76115487 CTTGAAGA
1 CTTGAAGA
76115495 TAGAAACCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 4 0.15
10 2 0.08
11 6 0.23
12 2 0.08
13 12 0.46
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (13 bp):
CTTGAAGAGATAT
Found at i:76115475 original size:22 final size:22
Alignment explanation
Indices: 76115447--76115494 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
76115437 TACATAAAGA
76115447 AAGAACTTGAAGAGATATCTTG
1 AAGAACTTGAAGAGATATCTTG
76115469 AAGAACTTGAAGAGATATCTTG
1 AAGAACTTGAAGAGATATCTTG
76115491 AAGA
1 AAGA
76115495 TAGAAACCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.25
Consensus pattern (22 bp):
AAGAACTTGAAGAGATATCTTG
Found at i:76118455 original size:27 final size:27
Alignment explanation
Indices: 76118417--76118496 Score: 117
Period size: 27 Copynumber: 3.0 Consensus size: 27
76118407 ACACACACAC
76118417 ACAATACAACACTAAATTAAAACCATA
1 ACAATACAACACTAAATTAAAACCATA
76118444 ACAATACAACACTAAATTAAAACCATA
1 ACAATACAACACTAAATTAAAACCATA
* * * *
76118471 ATAACA-AACACTACATTAAAAACATA
1 ACAATACAACACTAAATTAAAACCATA
76118497 GTTAATGTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
26 18 0.37
27 31 0.63
ACGTcount: A:0.60, C:0.21, G:0.00, T:0.19
Consensus pattern (27 bp):
ACAATACAACACTAAATTAAAACCATA
Found at i:76122636 original size:23 final size:23
Alignment explanation
Indices: 76122592--76122639 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
76122582 AATTTTTTAT
* * *
76122592 ATTTTTCAAGTTTAGATATCAAA
1 ATTTGTCAAGTTCAAATATCAAA
*
76122615 ATTTGTCAAGTTCAAATGTCAAA
1 ATTTGTCAAGTTCAAATATCAAA
76122638 AT
1 AT
76122640 GAACAATATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (23 bp):
ATTTGTCAAGTTCAAATATCAAA
Found at i:76123176 original size:3 final size:3
Alignment explanation
Indices: 76123168--76123192 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76123158 TTTTAAAACT
76123168 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
76123193 GCAAACAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:76124002 original size:28 final size:28
Alignment explanation
Indices: 76123962--76124047 Score: 172
Period size: 28 Copynumber: 3.1 Consensus size: 28
76123952 AGATAGTTTG
76123962 TATTAGTAGATGAACCTAAACATGTCCT
1 TATTAGTAGATGAACCTAAACATGTCCT
76123990 TATTAGTAGATGAACCTAAACATGTCCT
1 TATTAGTAGATGAACCTAAACATGTCCT
76124018 TATTAGTAGATGAACCTAAACATGTCCT
1 TATTAGTAGATGAACCTAAACATGTCCT
76124046 TA
1 TA
76124048 GTCTAATCGA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (28 bp):
TATTAGTAGATGAACCTAAACATGTCCT
Found at i:76125201 original size:26 final size:26
Alignment explanation
Indices: 76125165--76125225 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
76125155 ATATATTTTC
76125165 TCAAAATTTTACCAGGGGTAAAATCG
1 TCAAAATTTTACCAGGGGTAAAATCG
* * *
76125191 TCAAACTTTTACTAGGGGTAAAATTG
1 TCAAAATTTTACCAGGGGTAAAATCG
76125217 TCAAAATTT
1 TCAAAATTT
76125226 GTTAGGGGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (26 bp):
TCAAAATTTTACCAGGGGTAAAATCG
Found at i:76125237 original size:25 final size:25
Alignment explanation
Indices: 76125165--76125239 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 25
76125155 ATATATTTTC
*
76125165 TCAAAATTTTACCAGGGGTAAAATCG
1 TCAAAATTTTA-TAGGGGTAAAATCG
* *
76125191 TCAAACTTTTACTAGGGGTAAAATTG
1 TCAAAATTTTA-TAGGGGTAAAATCG
76125217 TCAAAATTTGT-TAGGGGTAAAAT
1 TCAAAATTT-TATAGGGGTAAAAT
76125240 AAGCATGAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
25 12 0.27
26 31 0.70
27 1 0.02
ACGTcount: A:0.37, C:0.11, G:0.20, T:0.32
Consensus pattern (25 bp):
TCAAAATTTTATAGGGGTAAAATCG
Found at i:76131840 original size:16 final size:16
Alignment explanation
Indices: 76131819--76131876 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
76131809 GTAATAGATG
76131819 TAATTTTATCATATAT
1 TAATTTTATCATATAT
*
76131835 TAATTTTTGAGATCA-AAAT
1 TAA-TTTT---ATCATATAT
76131854 GTAATTTTATCATATAT
1 -TAATTTTATCATATAT
76131871 TAATTT
1 TAATTT
76131877 ATAATTCCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
16 13 0.38
17 7 0.21
19 7 0.21
20 7 0.21
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (16 bp):
TAATTTTATCATATAT
Found at i:76132078 original size:19 final size:20
Alignment explanation
Indices: 76132051--76132089 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
76132041 TGAAAAGAAC
76132051 TAATGTTTA-TAAAATTTAG
1 TAATGTTTAGTAAAATTTAG
*
76132070 TAATTTTTATGTAAAATTTA
1 TAATGTTTA-GTAAAATTTA
76132090 AAGGTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
21 9 0.53
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
TAATGTTTAGTAAAATTTAG
Found at i:76132384 original size:22 final size:24
Alignment explanation
Indices: 76132359--76132415 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
76132349 AATAATTTTA
76132359 TATTAAAATTATTA-TAA-AATAT
1 TATTAAAATTATTACTAAGAATAT
*
76132381 TATTAATAATTA-TACTAAGAATGT
1 TATTAA-AATTATTACTAAGAATAT
76132405 TATT-AAATTAT
1 TATTAAAATTAT
76132416 ATATTATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
22 13 0.43
23 9 0.30
24 8 0.27
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (24 bp):
TATTAAAATTATTACTAAGAATAT
Found at i:76132633 original size:44 final size:46
Alignment explanation
Indices: 76132582--76132674 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 46
76132572 TACAACATCT
76132582 ATTCCATTCAACCAAACACAAGAATT-CT-ATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCC
* ***
76132626 ATTCCATTCAACTAAACAGTTGAATTACTGATTACAGCTCTATTCC
1 ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCC
76132672 ATT
1 ATT
76132675 ACAGCTCTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 22 0.51
45 2 0.05
46 19 0.44
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.33
Consensus pattern (46 bp):
ATTCCATTCAACCAAACACAAGAATTACTGATTACAGCTCTATTCC
Found at i:76132677 original size:16 final size:16
Alignment explanation
Indices: 76132656--76132710 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
76132646 TGAATTACTG
*
76132656 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCA
*
76132672 ATTACAGCTCTATTAA
1 ATTACAGCTCTATTCA
* * *
76132688 ATTACAACCCTATTCT
1 ATTACAGCTCTATTCA
76132704 ATTACAG
1 ATTACAG
76132711 TGAACCAAAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:76134578 original size:99 final size:99
Alignment explanation
Indices: 76134439--76134646 Score: 371
Period size: 99 Copynumber: 2.1 Consensus size: 99
76134429 GCCTCCCAGG
* *
76134439 AACCCTAAACCCTCGACCGAACAGGAGTCGATAGCCCAAGAACAATCCGAACCCATAACAGCCAA
1 AACCCTAACCCCTCGACCGAACACGAGTCGATAGCCCAAGAACAATCCGAACCCATAACAGCCAA
76134504 AACCACGATGGGTCCTCCGCCACCTCTTCCCATA
66 AACCACGATGGGTCCTCCGCCACCTCTTCCCATA
* **
76134538 AACCCTAACCCCTCGACCGAACCCGAGTCGATAGCCCAAGAGGAATCCGAACCCATAACAGCCAA
1 AACCCTAACCCCTCGACCGAACACGAGTCGATAGCCCAAGAACAATCCGAACCCATAACAGCCAA
76134603 AACCACGATGGGTCCTCCGCCACCTCTTCCCATA
66 AACCACGATGGGTCCTCCGCCACCTCTTCCCATA
76134637 AACCCTAACC
1 AACCCTAACC
76134647 TGCAAAATCC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 104 1.00
ACGTcount: A:0.32, C:0.40, G:0.15, T:0.13
Consensus pattern (99 bp):
AACCCTAACCCCTCGACCGAACACGAGTCGATAGCCCAAGAACAATCCGAACCCATAACAGCCAA
AACCACGATGGGTCCTCCGCCACCTCTTCCCATA
Found at i:76134689 original size:99 final size:98
Alignment explanation
Indices: 76134482--76134689 Score: 226
Period size: 99 Copynumber: 2.1 Consensus size: 98
76134472 GCCCAAGAAC
*
76134482 AATCCGAACCCATAACAGCCAAAACCACGATGGGTCCTCCGCCACCTCTTCCCATAAACCCTAAC
1 AATCAGAACCCATAACAGCCAAAACCACGATGGGTCCTCCGCCACCTCTTCCCATAAACCCTAA-
** * *** * **
76134547 CCCTCGACCGAACCCGAGTCGATAGCCCAAGAGG
65 CCCTCGACAAAACCCGAGACGATAGAAAAACACA
*
76134581 AATCCGAACCCATAACAGCCAAAACCACGATGGGTCCTCCGCCACCTCTTCCCATAAACCCTAA-
1 AATCAGAACCCATAACAGCCAAAACCACGATGGGTCCTCCGCCACCTCTTCCCATAAACCCTAAC
*
76134645 CCT-G-CAAAATCCCCTAGACGA-AGAAAAACCATCA
66 CCTCGACAAAA--CCCGAGACGATAGAAAAA-CA-CA
76134679 AAGTCAGAACC
1 AA-TCAGAACC
76134690 AAATTCAACT
Statistics
Matches: 93, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
95 3 0.03
96 5 0.05
97 12 0.13
98 2 0.02
99 71 0.76
ACGTcount: A:0.34, C:0.38, G:0.14, T:0.13
Consensus pattern (98 bp):
AATCAGAACCCATAACAGCCAAAACCACGATGGGTCCTCCGCCACCTCTTCCCATAAACCCTAAC
CCTCGACAAAACCCGAGACGATAGAAAAACACA
Found at i:76137165 original size:5 final size:5
Alignment explanation
Indices: 76137155--76137180 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
76137145 TTTAAATTTG
76137155 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
76137181 CAAACCAAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:76144407 original size:3 final size:3
Alignment explanation
Indices: 76144399--76144431 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
76144389 TTGACCAATG
76144399 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
76144432 CACCATTCAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:76156922 original size:35 final size:37
Alignment explanation
Indices: 76156856--76156927 Score: 103
Period size: 35 Copynumber: 2.0 Consensus size: 37
76156846 CATGTGGAGC
* * *
76156856 TAGGTGTTGGTCTTTTTTGATGACTTGTGTTTGTTTT
1 TAGGTGTTGGTCTTTTCTGATAACTTGTGTTTATTTT
76156893 TAGGTGTTGG-CTTTTCT-ATAACTTGTGTTTATTTT
1 TAGGTGTTGGTCTTTTCTGATAACTTGTGTTTATTTT
76156928 ATTTTATTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 16 0.50
36 6 0.19
37 10 0.31
ACGTcount: A:0.11, C:0.07, G:0.24, T:0.58
Consensus pattern (37 bp):
TAGGTGTTGGTCTTTTCTGATAACTTGTGTTTATTTT
Found at i:76159868 original size:27 final size:27
Alignment explanation
Indices: 76159830--76159896 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
76159820 TTATTCCGAT
* * *
76159830 GGGACGTTAAACACGAGGTAG-CTCAAG
1 GGGACATTAAACACGAGATAGTCT-AAC
76159857 GGGACATTAAACACGAGATAGTCTAAC
1 GGGACATTAAACACGAGATAGTCTAAC
*
76159884 GGGACACTAAACA
1 GGGACATTAAACA
76159897 TGGGGTAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 33 0.94
28 2 0.06
ACGTcount: A:0.39, C:0.19, G:0.27, T:0.15
Consensus pattern (27 bp):
GGGACATTAAACACGAGATAGTCTAAC
Found at i:76162361 original size:39 final size:39
Alignment explanation
Indices: 76162318--76162404 Score: 165
Period size: 39 Copynumber: 2.2 Consensus size: 39
76162308 CCGGCAATTA
76162318 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
*
76162357 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
76162396 GCCTGCTAG
1 GCCTGCTAG
76162405 ACATTAAGTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACGAG
Found at i:76166208 original size:26 final size:27
Alignment explanation
Indices: 76166178--76166229 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
76166168 ATATTTTTTT
*
76166178 TATTTCCCA-AAATAAACTTCTCAATG
1 TATTTCCAATAAATAAACTTCTCAATG
*
76166204 TATTTCCAATTAAATAATCTTCTCAA
1 TATTTCCAA-TAAATAAACTTCTCAA
76166230 CTTAATTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
28 14 0.64
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.38
Consensus pattern (27 bp):
TATTTCCAATAAATAAACTTCTCAATG
Found at i:76166242 original size:28 final size:28
Alignment explanation
Indices: 76166187--76166242 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
76166177 TTATTTCCCA
*
76166187 AAATAAACTTCTCAATGTATTTCCAATT
1 AAATAAACTTCTCAATGTAATTCCAATT
* *
76166215 AAATAATCTTCTCAACT-TAATTCTAATT
1 AAATAAACTTCTCAA-TGTAATTCCAATT
76166243 TTGTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (28 bp):
AAATAAACTTCTCAATGTAATTCCAATT
Found at i:76166488 original size:57 final size:57
Alignment explanation
Indices: 76166388--76166564 Score: 239
Period size: 57 Copynumber: 3.1 Consensus size: 57
76166378 TTTTTTAGGT
* * *
76166388 CATTTTCATTTTCGTTTTGGAGAAAACCAC-ATCCATTTTCAAATGTTTCTATTTCTC
1 CATTATCATTTTCATTTTGGAGAAAACCACAAT-CATTTCCAAATGTTTCTATTTCTC
* * *
76166445 TATTATCATTTTCATTTTGGAGAAAACCACAATCGTTTCCAAATGATTCTATTTCTC
1 CATTATCATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCTATTTCTC
* * *
76166502 CATTTTCATTTTCATTTTGGACAAAACCACAATTATTTCCAAATGATTTCTCATTTCTC
1 CATTATCATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATG-TTTCT-ATTTCTC
76166561 CATT
1 CATT
76166565 TTTACCATAT
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
57 88 0.84
58 6 0.06
59 11 0.10
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (57 bp):
CATTATCATTTTCATTTTGGAGAAAACCACAATCATTTCCAAATGTTTCTATTTCTC
Found at i:76167968 original size:18 final size:18
Alignment explanation
Indices: 76167947--76167984 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
76167937 CAAAATTTAC
76167947 ATTTGCATT-TGTATCTGA
1 ATTTG-ATTATGTATCTGA
*
76167965 ATTTGATTATGTGTCTGA
1 ATTTGATTATGTATCTGA
76167983 AT
1 AT
76167985 CTAAATATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.24, C:0.08, G:0.18, T:0.50
Consensus pattern (18 bp):
ATTTGATTATGTATCTGA
Found at i:76169954 original size:18 final size:19
Alignment explanation
Indices: 76169933--76169976 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
76169923 CTAATTTAAT
*
76169933 TAAAAAA-TTATATTTTTA
1 TAAAAAAGTTATATTATTA
76169951 TAAAATAAGTTATATTATTA
1 TAAAA-AAGTTATATTATTA
76169971 TAAAAA
1 TAAAAA
76169977 TAATTTTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 3 0.13
20 15 0.65
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TAAAAAAGTTATATTATTA
Found at i:76190529 original size:32 final size:32
Alignment explanation
Indices: 76190492--76190552 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
76190482 AATGCTTATC
76190492 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
76190524 ATGCCCATCATCCATTAACTATTAAAATG
1 ATGCCCATCATCCATTAACTATTAAAATG
76190553 TTAAAATGCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.31
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:76197030 original size:25 final size:27
Alignment explanation
Indices: 76196993--76197045 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
76196983 TCAAACATGC
76196993 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
76197019 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
76197045 A
1 A
76197046 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:76197095 original size:28 final size:27
Alignment explanation
Indices: 76197054--76197106 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
76197044 TAAAACTGTA
76197054 AATTTTCTACTTTTAAAGGTATTTCAGT
1 AATTTTCTACTTTT-AAGGTATTTCAGT
*
76197082 AATTTATCTA-TTTTAAGGTTTTTCA
1 AATTT-TCTACTTTTAAGGTATTTCA
76197107 TGTATATTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 10 0.43
28 9 0.39
29 4 0.17
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.53
Consensus pattern (27 bp):
AATTTTCTACTTTTAAGGTATTTCAGT
Found at i:76198569 original size:32 final size:32
Alignment explanation
Indices: 76198527--76198591 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
76198517 AATGTTTATC
76198527 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
*
76198559 ATGCCTATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
76198591 A
1 A
76198592 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:76198611 original size:32 final size:32
Alignment explanation
Indices: 76198533--76198612 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
76198523 TATCATGCCC
* *
76198533 ATCATCCATTAACTATTAAAATGCTAATGCCT
1 ATCATCCATCAACTATTAAAATGCTAATGCAT
*
76198565 ATCATCCATTAACTATTAAAATGCTAAAATGCAT
1 ATCATCCATCAACTATTAAAATGCT--AATGCAT
*
76198599 A-CAT-TATCAACTAT
1 ATCATCCATCAACTAT
76198613 CCATCACCTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
32 33 0.77
33 3 0.07
34 7 0.16
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (32 bp):
ATCATCCATCAACTATTAAAATGCTAATGCAT
Found at i:76201347 original size:20 final size:20
Alignment explanation
Indices: 76201322--76201361 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76201312 CCGTTAACTT
76201322 CACATATGATTCAGACCCAA
1 CACATATGATTCAGACCCAA
76201342 CACATATGATTCAGACCCAA
1 CACATATGATTCAGACCCAA
76201362 ATTGCCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.30, G:0.10, T:0.20
Consensus pattern (20 bp):
CACATATGATTCAGACCCAA
Found at i:76201388 original size:3 final size:3
Alignment explanation
Indices: 76201380--76201404 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
76201370 AAAACTGTTA
76201380 CAT CAT CAT CAT CAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT C
76201405 CATTGTATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:76247596 original size:40 final size:40
Alignment explanation
Indices: 76247552--76247663 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
76247542 GCGTATCGAT
* * *
76247552 ATAGCTTCGGCTATATAAAGAACTTAGTGTGTGCA-TCGGA-
1 ATAGCTTCGGCTATA-AAGGCACTTAGTGTGTG-AGACGGAG
*
76247592 ATAGCTTCGGCTATAAATGGCACTTAGTGTGTGAGACTGAG
1 ATAGCTTCGGCTATAAA-GGCACTTAGTGTGTGAGACGGAG
76247633 ATAGCTTCGGCTATGAAAGGCACTTAGTGTG
1 ATAGCTTCGGCTAT-AAAGGCACTTAGTGTG
76247664 CGAGTTTATA
Statistics
Matches: 64, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
39 3 0.05
40 31 0.48
41 27 0.42
42 3 0.05
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (40 bp):
ATAGCTTCGGCTATAAAGGCACTTAGTGTGTGAGACGGAG
Found at i:76249205 original size:85 final size:85
Alignment explanation
Indices: 76249062--76249240 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
76249052 GGCCGGCCAT
*
76249062 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
76249127 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
76249147 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
76249212 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
76249232 GGGCATGGG
1 GAGCATGGG
76249241 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:76251482 original size:47 final size:47
Alignment explanation
Indices: 76251431--76252126 Score: 1216
Period size: 47 Copynumber: 14.7 Consensus size: 47
76251421 TTAGGATTCT
* * *
76251431 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
*
76251478 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251525 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251572 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251619 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251666 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
76251715 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
76251762 ATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251809 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
76251858 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251904 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251951 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76251998 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
76252045 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
76252092 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76252127 TCCCGAAGGG
Statistics
Matches: 628, Mismatches: 15, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
46 47 0.07
47 488 0.78
49 93 0.15
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:76252300 original size:37 final size:37
Alignment explanation
Indices: 76252244--76252322 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76252234 CCGAGCTCTA
* * *
76252244 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76252281 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76252318 AAGAC
1 AAGAC
76252323 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76254181 original size:40 final size:40
Alignment explanation
Indices: 76253538--76254167 Score: 974
Period size: 40 Copynumber: 15.8 Consensus size: 40
76253528 GAGAATTGAG
76253538 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76253578 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76253618 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76253658 AGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * * *
76253698 GGTGTTATATCTGGGCTAAGTCCTGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76253738 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76253778 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
76253818 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
76253858 AGTGATATATTCGAGCTAAGACCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76253898 AGTGATGTATCCGGGCTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
76253938 GGTGTTATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
76253978 AGTGATGTATCCGGGCTAAGT-CCGAAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAA-GAGCATTCGTGCT
* *
76254018 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
76254058 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
76254098 AGTGATATATCCGTGCTAAACCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
76254138 GGTGTTATATCCGGGCTAGGTCCCGAAGAG
1 AGTGATATATCCGGGCTAAGTCCCGAAGAG
76254168 TAATCATGCT
Statistics
Matches: 533, Mismatches: 55, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 4 0.01
40 525 0.98
41 4 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:76256036 original size:85 final size:85
Alignment explanation
Indices: 76255893--76256071 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
76255883 GGCCGGCCAT
*
76255893 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
76255958 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
76255978 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
76256043 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
76256063 GGGCATGGG
1 GAGCATGGG
76256072 CAATAAAATA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.38, C:0.08, G:0.27, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGAGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:76258310 original size:47 final size:47
Alignment explanation
Indices: 76258259--76258767 Score: 799
Period size: 47 Copynumber: 10.7 Consensus size: 47
76258249 TTAGGATTCT
* * * *
76258259 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
76258306 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
76258353 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76258400 ATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGG-CTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
76258447 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
76258496 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
76258545 ATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76258592 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
76258639 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
76258686 ATATGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
76258733 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
76258768 TCCCGAAGGG
Statistics
Matches: 437, Mismatches: 20, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 341 0.78
48 6 0.01
49 89 0.20
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:76258665 original size:239 final size:237
Alignment explanation
Indices: 76258280--76258767 Score: 804
Period size: 239 Copynumber: 2.1 Consensus size: 237
76258270 GTGAACATGC
* *
76258280 ATATATGAGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
*
76258345 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
*
76258410 TGTGAAAGTGTATATATATGTGAT-AGG-CTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
131 TGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTG--TATA
* * * *
76258473 TATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
192 TATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTAT
*
76258519 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAGGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
76258584 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
66 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
76258649 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATG
131 TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATG
* * *
76258714 TGACAAGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
196 TGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTAT
76258756 A-A-ATGTGATAAG
1 ATATATGTGATAAG
76258768 TCCCGAAGGG
Statistics
Matches: 235, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
235 10 0.04
236 1 0.00
237 56 0.24
238 3 0.01
239 165 0.70
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (237 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAA
TGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATG
TGACAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTAT
Found at i:76258942 original size:37 final size:37
Alignment explanation
Indices: 76258886--76258964 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76258876 CCGAGCTCTA
* * *
76258886 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
76258923 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76258960 AAGAC
1 AAGAC
76258965 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76264852 original size:19 final size:19
Alignment explanation
Indices: 76264828--76264891 Score: 67
Period size: 19 Copynumber: 3.3 Consensus size: 19
76264818 AGCGAAAAGA
76264828 GATAAAATTGTAGGTTGGT
1 GATAAAATTGTAGGTTGGT
* * * *
76264847 GATAAAGAATTCT-TGATAGT
1 GAT-AA-AATTGTAGGTTGGT
76264867 GATAAAATTGTAGGTTGGT
1 GATAAAATTGTAGGTTGGT
76264886 GATAAA
1 GATAAA
76264892 GAATTCTTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
18 5 0.15
19 15 0.44
20 9 0.26
21 5 0.15
ACGTcount: A:0.38, C:0.02, G:0.27, T:0.34
Consensus pattern (19 bp):
GATAAAATTGTAGGTTGGT
Found at i:76264870 original size:20 final size:20
Alignment explanation
Indices: 76264845--76264906 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
76264835 TTGTAGGTTG
76264845 GTGATAAAGAATTCTTGATA
1 GTGATAAAGAATTCTTGATA
* * * *
76264865 GTGAT-AA-AATTGTAGGTTG
1 GTGATAAAGAATTCT-TGATA
76264884 GTGATAAAGAATTCTTGATA
1 GTGATAAAGAATTCTTGATA
76264904 GTG
1 GTG
76264907 TCACCTTGGA
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
18 5 0.16
19 9 0.29
20 12 0.39
21 5 0.16
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.35
Consensus pattern (20 bp):
GTGATAAAGAATTCTTGATA
Found at i:76264882 original size:39 final size:39
Alignment explanation
Indices: 76264828--76264906 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
76264818 AGCGAAAAGA
76264828 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
1 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
76264867 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
1 GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
76264906 G
1 G
76264907 TCACCTTGGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.35, C:0.03, G:0.27, T:0.35
Consensus pattern (39 bp):
GATAAAATTGTAGGTTGGTGATAAAGAATTCTTGATAGT
Found at i:76266403 original size:24 final size:24
Alignment explanation
Indices: 76266338--76266403 Score: 82
Period size: 24 Copynumber: 2.8 Consensus size: 24
76266328 GTTAATGAGT
76266338 AGTAAGCTC-TATTGAGCTAGAAAC
1 AGTAAGCTCTTA-TGAGCTAGAAAC
*
76266362 AGTAAGCTCTTATAAGCTA-AGAAC
1 AGTAAGCTCTTATGAGCTAGA-AAC
*
76266386 AGTAAGCTCTTACGAGCT
1 AGTAAGCTCTTATGAGCT
76266404 GATATATCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
23 1 0.03
24 34 0.92
25 2 0.05
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (24 bp):
AGTAAGCTCTTATGAGCTAGAAAC
Found at i:76268629 original size:31 final size:31
Alignment explanation
Indices: 76268584--76268698 Score: 171
Period size: 31 Copynumber: 3.8 Consensus size: 31
76268574 TTAGTCTTCA
*
76268584 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
76268614 CATATCACTGAGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
76268645 CATATCACTGGGCCAAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
76268676 CATATCATTGGGCTGAAG-CTTTT
1 CATATCACTGGGCCGAAGCCTTTT
76268699 ACTGTAAACG
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
30 10 0.13
31 67 0.87
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:76268771 original size:42 final size:42
Alignment explanation
Indices: 76268724--76268813 Score: 162
Period size: 42 Copynumber: 2.1 Consensus size: 42
76268714 GCCCTTAGGC
*
76268724 CCATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGA
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
*
76268766 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGC
1 CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
76268808 CCATTT
1 CCATTT
76268814 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.32
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTATGCAAGA
Found at i:76268989 original size:25 final size:25
Alignment explanation
Indices: 76268961--76269030 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
76268951 CTCTTTTAAT
76268961 AACTGGGGCAAAGCCCTTTAT-GATA
1 AACTGGGGCAAAGCCCTTT-TCGATA
*
76268986 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
76269011 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76269031 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
24 1 0.02
25 41 0.98
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:76269876 original size:27 final size:27
Alignment explanation
Indices: 76269834--76270099 Score: 246
Period size: 27 Copynumber: 9.8 Consensus size: 27
76269824 TTTATCCTAT
* * * *
76269834 AAGGGTGTTTTGGTAAATCTACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACC
* **
76269861 AAGGGTATTTCAGTAATTTTGTAAACC
1 AAGGGTATTTCGGTAATTTTACAAACC
* ** * *
76269888 AATGGTATTTCTATAATTTTTAGAAAGTC
1 AAGGGTATTTCGGTAA-TTTTACAAA-CC
* ** *
76269917 AAGGGTATTTCTGTAATTTTGTAAATC
1 AAGGGTATTTCGGTAATTTTACAAACC
* **
76269944 AAGGGTATTTTGGTAATTTTACAAATT
1 AAGGGTATTTCGGTAATTTTACAAACC
* *
76269971 GAGGGTATTTTGGTAATTTTACAAACC
1 AAGGGTATTTCGGTAATTTTACAAACC
*
76269998 -AGTGGTATTTCGGTAATTTTACAAACT
1 AAG-GGTATTTCGGTAATTTTACAAACC
* *
76270025 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACC
* *
76270052 AAGGGTATTTTGGTAATTTTACAAACT
1 AAGGGTATTTCGGTAATTTTACAAACC
* *
76270079 AGGGGTATTTTGGTAATTTTA
1 AAGGGTATTTCGGTAATTTTA
76270100 TCCTACAGGG
Statistics
Matches: 206, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 173 0.84
28 16 0.08
29 15 0.07
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AAGGGTATTTCGGTAATTTTACAAACC
Found at i:76270115 original size:81 final size:81
Alignment explanation
Indices: 76269919--76270099 Score: 274
Period size: 81 Copynumber: 2.2 Consensus size: 81
76269909 AGAAAGTCAA
* ** * *
76269919 GGGTATTTCTGTAATTTTGTAAA-TCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTG
1 GGGTATTTCGGTAATTTTACAAACT-AAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTG
76269983 GTAATTTTACAAACCAG
65 GTAATTTTACAAACCAG
*
76270000 TGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
1 GGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
*
76270065 TAATTTTACAAACTAG
66 TAATTTTACAAACCAG
*
76270081 GGGTATTTTGGTAATTTTA
1 GGGTATTTCGGTAATTTTA
76270100 TCCTACAGGG
Statistics
Matches: 90, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 89 0.99
82 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (81 bp):
GGGTATTTCGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGG
TAATTTTACAAACCAG
Found at i:76270123 original size:81 final size:81
Alignment explanation
Indices: 76269853--76270129 Score: 236
Period size: 81 Copynumber: 3.4 Consensus size: 81
76269843 TTGGTAAATC
* * ** * * * * *
76269853 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTTTAGAAAGTC
1 TACAAACTAAGGGTATTTCAATAATTTTACAAACTAAGGGTATTT-TGGTAA-TTTTACAAA-CC
* *
76269917 AAGGGTATTTCTGTAATTT
63 AGGGGTATTTCGGTAATTT
** *** * *
76269936 TGTAAA-TCAAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTTACAAACCAG
1 TACAAACT-AAGGGTATTTCAATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACCAG
*
76270000 TGGTATTTCGGTAATTT
65 GGGTATTTCGGTAATTT
*** *
76270017 TACAAACTAAGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACTAGG
1 TACAAACTAAGGGTATTTCAATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACCAGG
*
76270082 GGTATTTTGGTAATTT
66 GGTATTTCGGTAATTT
** * *
76270098 TATCCTAC-AGGGGTATTTCAATAATTTGACAA
1 TA-CAAACTAAGGGTATTTCAATAATTTTACAA
76270130 TCGAGGGTAA
Statistics
Matches: 159, Mismatches: 31, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
81 110 0.69
82 13 0.08
83 36 0.23
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (81 bp):
TACAAACTAAGGGTATTTCAATAATTTTACAAACTAAGGGTATTTTGGTAATTTTACAAACCAGG
GGTATTTCGGTAATTT
Found at i:76270244 original size:81 final size:81
Alignment explanation
Indices: 76270128--76270327 Score: 278
Period size: 81 Copynumber: 2.5 Consensus size: 81
76270118 ATAATTTGAC
* * *
76270128 AATCGAGGGTAAAATAGTAATTTTTTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATAGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGT
*
76270192 AAAACGGTAATTCTGTA
65 AAAACGGTAATTCTATA
* *
76270209 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTG
1 AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
*
76270274 AAATGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
76270290 AATCGATGGTAAATTTA-TAATTCTACAAATCGAGGGTA
1 AATCGAGGGTAAA-ATAGTAATTCTATAAATCGAGGGTA
76270328 TTTCAGTAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
81 104 0.98
82 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (81 bp):
AATCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:76270310 original size:27 final size:27
Alignment explanation
Indices: 76270128--76270327 Score: 240
Period size: 27 Copynumber: 7.4 Consensus size: 27
76270118 ATAATTTGAC
* * *
76270128 AATCGAGGGTAAAATAGTAATTTTTTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
76270155 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
* *
76270182 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
76270209 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
76270236 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
76270263 AATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * ** *
76270290 AATCGATGGTAAATTTATAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
76270317 AATCGAGGGTA
1 AATCGAGGGTA
76270328 TTTCAGTAAT
Statistics
Matches: 151, Mismatches: 20, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 149 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:76272620 original size:31 final size:31
Alignment explanation
Indices: 76272585--76272689 Score: 160
Period size: 31 Copynumber: 3.4 Consensus size: 31
76272575 CATATACTAA
*
76272585 GCCGAAGCCTTTCCATAAATTATATCACTGG
1 GCCGAAGCCTTTTCATAAATTATATCACTGG
76272616 GCCGAAGCCTTTTCATAAATCT-TATCACTGG
1 GCCGAAGCCTTTTCATAAAT-TATATCACTGG
* *
76272647 GCAGAAGCCTTTTCATAAATCATATCACTGG
1 GCCGAAGCCTTTTCATAAATTATATCACTGG
76272678 GCCGAAG-CTTTT
1 GCCGAAGCCTTTT
76272690 ACTGTAAACG
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
30 5 0.07
31 62 0.91
32 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
GCCGAAGCCTTTTCATAAATTATATCACTGG
Found at i:76272762 original size:42 final size:42
Alignment explanation
Indices: 76272715--76272797 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
76272705 GCCCTTAAGC
*
76272715 CCATTTCAATATCACATGTAATGTCAAT-AGATGTATGCAAGT
1 CCATTTCAATATCACATGTAATGTCAATGA-ATGTAAGCAAGT
*
76272757 CCATTTCAATATCATATGTAATGTCAATGAATGTAAGCAAG
1 CCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAAG
76272798 CCTATTTGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 37 0.97
43 1 0.03
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (42 bp):
CCATTTCAATATCACATGTAATGTCAATGAATGTAAGCAAGT
Found at i:76272971 original size:25 final size:25
Alignment explanation
Indices: 76272938--76273007 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 25
76272928 CTCTTTTAAT
*
76272938 AACTAGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
76272963 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
76272988 AACCGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76273008 AGCATTTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:76276837 original size:27 final size:27
Alignment explanation
Indices: 76276784--76277020 Score: 165
Period size: 27 Copynumber: 8.7 Consensus size: 27
76276774 TTTCATCCTA
* * * * *
76276784 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
76276811 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* ** * *
76276838 CAATGGTATTTCTATAATTTTTAAAAAGT
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * * *
76276867 CAAAGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
76276894 CAAGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTCGGTAATTTTATAAA-C
*
76276922 GAA-GGTATTTCGGTAATTTTATAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
76276948 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * * *
76276975 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
76277001 CTAGGAGTATTTTGGTAATT
1 CAAGG-GTATTTCGGTAATT
76277021 CTATCATACA
Statistics
Matches: 169, Mismatches: 34, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 133 0.79
28 18 0.11
29 15 0.09
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:76276956 original size:54 final size:52
Alignment explanation
Indices: 76276786--76277020 Score: 184
Period size: 54 Copynumber: 4.3 Consensus size: 52
76276776 TCATCCTACA
* * * ** * *
76276786 AGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCAGTAATTTTGTAAACC
1 AGGGTATTTTGGTAATTTTACAAATTAA-GGTATTTCGGTAATTTTATAAACC
* * * * * * *
76276839 AATGGTATTTCT-ATAATTTTTAAAAAGTCAAAGGTATTTCTGTAATTTTGTAAATCA
1 -AGGGTATTT-TGGTAA-TTTTACAAA-T-TAAGGTATTTCGGTAATTTTATAAA-CC
76276896 AGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTATAAACC
1 AGGGTATTTTGGTAATTTTACAAATT-AAGGTATTTCGGTAATTTTATAAACC
* * * * * *
76276949 AGTGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACT
1 AG-GGTATTTTGGTAATTTTACAAATTA-AGGTATTTCGGTAATTTTATAAACC
76277003 AGGAGTATTTTGGTAATT
1 AGG-GTATTTTGGTAATT
76277021 CTATCATACA
Statistics
Matches: 147, Mismatches: 24, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
53 5 0.03
54 91 0.62
55 16 0.11
56 32 0.22
57 3 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (52 bp):
AGGGTATTTTGGTAATTTTACAAATTAAGGTATTTCGGTAATTTTATAAACC
Found at i:76277037 original size:27 final size:26
Alignment explanation
Indices: 76276898--76277049 Score: 153
Period size: 27 Copynumber: 5.7 Consensus size: 26
76276888 GTAAATCAAG
**
76276898 GGTATTTTGGTAATTTTACAAATTGAA
1 GGTATTTTGGTAATTTTACAAACAG-A
* * *
76276925 GGTATTTCGGTAATTTTATAAACCAGT
1 GGTATTTTGGTAATTTTACAAA-CAGA
* *
76276952 GGTATTTCGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAAC-AGA
76276979 GGTATTTTGGTAATTTTACAAACTAG-
1 GGTATTTTGGTAATTTTACAAAC-AGA
* *
76277005 GAGTATTTTGGTAATTCTATCATACAGA
1 G-GTATTTTGGTAATTTTA-CAAACAGA
*
76277033 GGTATTTTTGTAATTTT
1 GGTATTTTGGTAATTTT
76277050 GCAATCGAGG
Statistics
Matches: 108, Mismatches: 12, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
26 2 0.02
27 100 0.93
28 6 0.06
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACAGA
Found at i:76277037 original size:81 final size:81
Alignment explanation
Indices: 76276870--76277062 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 81
76276860 AAAAAGTCAA
** *
76276870 AGGTATTTCTGTAATTTTGTAAATCAAGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGG
1 AGGTATTTCTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATAGAAGGTATTTCGG
*
76276935 TAATTTTATAAACCAG
66 TAATTCTATAAACCAG
* * * * *
76276951 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGA-GTATTTT
1 AGGTATTTCTGTAATTTTACAAATC-AAGGGTATTTTGGTAATTTTACAAA-TAGAAGGTATTTC
*
76277014 GGTAATTCTATCATA-CAG
64 GGTAATTCTAT-AAACCAG
* * *
76277032 AGGTATTTTTGTAATTTTGC-AATCGAGGGTA
1 AGGTATTTCTGTAATTTTACAAATCAAGGGTA
76277063 AAACAGTAAT
Statistics
Matches: 92, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
80 8 0.09
81 79 0.86
82 5 0.05
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
AGGTATTTCTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATAGAAGGTATTTCGG
TAATTCTATAAACCAG
Found at i:76277091 original size:27 final size:27
Alignment explanation
Indices: 76277052--76277248 Score: 245
Period size: 27 Copynumber: 7.3 Consensus size: 27
76277042 GTAATTTTGC
* *
76277052 AATCGAGGGTAAAACAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
76277079 AA-CTGAGGGTAAAATGGTAATTTTATA
1 AATC-GAGGGTAAAACGGTAATTTTATA
*
76277106 AATCGAGGGTAAAACAGTAATTTTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* *
76277133 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
*
76277160 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * *
76277187 AATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTTTATA
* * * *
76277214 AATCGAGGGT-AAATGGTAAATCTACA
1 AATCGAGGGTAAAACGGTAATTTTATA
76277240 AATCGAGGG
1 AATCGAGGG
76277249 CATTTCAGTA
Statistics
Matches: 151, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
26 24 0.16
27 126 0.83
28 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTATA
Found at i:76277119 original size:54 final size:54
Alignment explanation
Indices: 76277052--76277226 Score: 298
Period size: 54 Copynumber: 3.2 Consensus size: 54
76277042 GTAATTTTGC
*
76277052 AATCGAGGGTAAAACAGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATC-GAGGGTAAAATGGTAATTCTATA
*
76277106 AATCGAGGGTAAAACAGTAATTTTATAAATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
* *
76277160 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTGAAATGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
76277214 AATCGAGGGTAAA
1 AATCGAGGGTAAA
76277227 TGGTAAATCT
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
54 114 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.23, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAATGGTAATTCTATA
Found at i:76281375 original size:31 final size:31
Alignment explanation
Indices: 76281337--76281415 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
76281327 TTTAATGGTT
76281337 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
76281368 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
76281399 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
76281416 ACTGTAAATG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:76281489 original size:42 final size:42
Alignment explanation
Indices: 76281442--76281530 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
76281432 CCCTTAGGCT
* ** *
76281442 CATTTCAATATCACATGTAATGTCAATGGATGTATGCAAGCC
1 CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
76281484 CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
1 CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
76281526 CATTT
1 CATTT
76281531 GGGGAGACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.30
Consensus pattern (42 bp):
CATTTCAATATCACATGAAATACCAATGAATGTATGCAAGCC
Found at i:76281706 original size:25 final size:25
Alignment explanation
Indices: 76281678--76281747 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
76281668 CTCTTTTAAT
76281678 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
76281703 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
76281728 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76281748 AGCACTTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:76281801 original size:16 final size:16
Alignment explanation
Indices: 76281780--76281810 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76281770 CCCATATCCC
*
76281780 ATGCAATATGTCATGT
1 ATGCAAAATGTCATGT
76281796 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
76281811 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:76282696 original size:27 final size:27
Alignment explanation
Indices: 76282666--76282774 Score: 78
Period size: 27 Copynumber: 3.9 Consensus size: 27
76282656 GTAAATCTAC
76282666 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
* *
76282693 AAACCAATGGTATTCCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
76282719 AAAAAAGTCAAGGGTATTTCTGTAACTTTGT
1 ---AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
76282750 AAATCAAAGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
76282775 ACAAATTGAG
Statistics
Matches: 64, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
26 1 0.02
27 39 0.61
28 4 0.06
29 3 0.05
30 16 0.25
31 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:76282780 original size:27 final size:27
Alignment explanation
Indices: 76282750--76282826 Score: 75
Period size: 27 Copynumber: 2.9 Consensus size: 27
76282740 GTAACTTTGT
76282750 AAATCAAAGGTATTTTGGTAATTT-TAC
1 AAATCAAAGGTATTTTGGTAATTTCT-C
** * *
76282777 AAATTGAGGGTATTTCGGTAATTTCTC
1 AAATCAAAGGTATTTTGGTAATTTCTC
* **
76282804 AAACCAGTGGTATTTTGGTAATT
1 AAATCAAAGGTATTTTGGTAATT
76282827 CTATCCTACA
Statistics
Matches: 39, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
AAATCAAAGGTATTTTGGTAATTTCTC
Found at i:76282896 original size:27 final size:27
Alignment explanation
Indices: 76282858--76282949 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
76282848 GAAATTTCAC
*
76282858 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAAGGTAAAACGGTAATTTTGTA
*
76282885 AA-CTGAAGGTAAAATGGTAATTTTGTA
1 AATC-GAAGGTAAAACGGTAATTTTGTA
* * * *
76282912 AATCGAGGGTAAAACGATAATTCTATA
1 AATCGAAGGTAAAACGGTAATTTTGTA
*
76282939 AATCGAGGGTA
1 AATCGAAGGTA
76282950 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.02
27 54 0.96
28 1 0.02
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (27 bp):
AATCGAAGGTAAAACGGTAATTTTGTA
Found at i:76288737 original size:27 final size:26
Alignment explanation
Indices: 76288689--76288740 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
76288679 GCGAGGCTGC
*
76288689 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
76288715 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
76288741 TTGTAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:76295812 original size:40 final size:40
Alignment explanation
Indices: 76295782--76295949 Score: 203
Period size: 40 Copynumber: 4.2 Consensus size: 40
76295772 GGACTAAGAT
* *
76295782 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
76295822 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** * *
76295862 CCGAAGGCATTCGTGCGAGTTGTTGAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
76295902 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
76295941 CCGAAGGCA
1 CCGAAGGCA
76295950 CTTGAACGAG
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 31 0.27
40 84 0.73
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:76295866 original size:80 final size:79
Alignment explanation
Indices: 76295729--76295949 Score: 237
Period size: 80 Copynumber: 2.8 Consensus size: 79
76295719 TTGAATGCTG
* * * * * * *
76295729 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
*
76295793 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
76295809 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* ** *
76295874 GTGCGAGTTGTTGAA
65 GTGCGAGATACTAAA
* * * * *
76295889 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCA
76295950 CTTGAACGAG
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
79 33 0.28
80 82 0.69
81 4 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:76295971 original size:79 final size:80
Alignment explanation
Indices: 76295807--76295986 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 80
76295797 CGAGATACTA
* * *
76295807 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAT
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** ** *
76295872 TCGTGCGAGTTGTTG
66 TCGAACGAGGAGCTG
* * *
76295887 AATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCAC
1 AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCA-
76295951 TT-GAACGAGGAGCT-
65 TTCGAACGAGGAGCTG
* *
76295965 ATATCC-GGTTAAATTCCGAAGG
1 A-ATCCGGGTTAAGTCCCGAAGG
76295987 TACGTGATTT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
78 14 0.17
79 43 0.51
80 27 0.32
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (80 bp):
AATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
TCGAACGAGGAGCTG
Found at i:76312674 original size:10 final size:10
Alignment explanation
Indices: 76312659--76312696 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
76312649 GAAATTCGAA
76312659 AAAAAAATTT
1 AAAAAAATTT
*
76312669 AAAAAAATTG
1 AAAAAAATTT
*
76312679 AAAAAAAATT
1 AAAAAAATTT
76312689 AAAAAAAT
1 AAAAAAAT
76312697 CGAAGTATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (10 bp):
AAAAAAATTT
Found at i:76312684 original size:20 final size:20
Alignment explanation
Indices: 76312658--76312696 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
76312648 GGAAATTCGA
76312658 AAAAAAAATTTAAAAAAATTG
1 AAAAAAAA-TTAAAAAAATTG
76312679 AAAAAAAATTAAAAAAAT
1 AAAAAAAATTAAAAAAAT
76312697 CGAAGTATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (20 bp):
AAAAAAAATTAAAAAAATTG
Found at i:76315626 original size:11 final size:11
Alignment explanation
Indices: 76315610--76315643 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
76315600 AAAAGAGAAG
76315610 AAATTCAAAAA
1 AAATTCAAAAA
76315621 AAATTCAAAAA
1 AAATTCAAAAA
*
76315632 AAATTGAAAAA
1 AAATTCAAAAA
76315643 A
1 A
76315644 GGAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.18
Consensus pattern (11 bp):
AAATTCAAAAA
Found at i:76316588 original size:12 final size:13
Alignment explanation
Indices: 76316550--76316593 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
76316540 AAAATAGTGA
*
76316550 GAGAAAAGAAAAT
1 GAGAAAAGAAATT
76316563 GAAGAAAAGAAAATT
1 G-AGAAAAG-AAATT
76316578 GA-AAAAGAAATT
1 GAGAAAAGAAATT
76316590 GAGA
1 GAGA
76316594 TTGAGAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 7 0.26
13 7 0.26
14 8 0.30
15 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.23, T:0.11
Consensus pattern (13 bp):
GAGAAAAGAAATT
Found at i:76316596 original size:18 final size:18
Alignment explanation
Indices: 76316575--76316609 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
76316565 AGAAAAGAAA
76316575 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
76316593 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
76316610 AAAGAAAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:76319996 original size:20 final size:20
Alignment explanation
Indices: 76319950--76319996 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
76319940 AGCTCGTTTC
*
76319950 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
76319970 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
76319990 CAGCTCA
1 CAGCTCA
76319997 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:76324449 original size:20 final size:20
Alignment explanation
Indices: 76324403--76324449 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
76324393 AGCTCGTTTC
*
76324403 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* *
76324423 CAACTCACTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
76324443 CAGCTCA
1 CAGCTCA
76324450 ATCTTAACCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.36, G:0.13, T:0.21
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:76327614 original size:20 final size:20
Alignment explanation
Indices: 76327591--76327637 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
76327581 AGGTTAAGAT
*
76327591 TGAGCTGAATTGAGCTTGAA
1 TGAGCTGAATTGAGCTCGAA
* * *
76327611 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
76327631 TGAGCTG
1 TGAGCTG
76327638 GAAACAAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:76331205 original size:11 final size:11
Alignment explanation
Indices: 76331183--76331225 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 11
76331173 GAAGAAGAGG
76331183 AAATTCGAAAAA
1 AAATT-GAAAAA
76331195 AAATTGAAAAAAA
1 AAATTG--AAAAA
76331208 AAATT-AAAAA
1 AAATTGAAAAA
76331218 AAATTGAA
1 AAATTGAA
76331226 GTATATAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 10 0.36
11 3 0.11
12 5 0.18
13 10 0.36
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (11 bp):
AAATTGAAAAA
Found at i:76331208 original size:13 final size:12
Alignment explanation
Indices: 76331190--76331220 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
76331180 AGGAAATTCG
76331190 AAAAAAAATTGAA
1 AAAAAAAATT-AA
76331203 AAAAAAAATTAA
1 AAAAAAAATTAA
76331215 AAAAAA
1 AAAAAA
76331221 TTGAAGTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (12 bp):
AAAAAAAATTAA
Found at i:76332532 original size:20 final size:20
Alignment explanation
Indices: 76332486--76332532 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
76332476 AGCTCGTTTC
*
76332486 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
76332506 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
76332526 CAGCTCA
1 CAGCTCA
76332533 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:76335622 original size:20 final size:20
Alignment explanation
Indices: 76335577--76335622 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
76335567 GCTCGTTTCT
*
76335577 AGCTCACTCGAGCTCAAGTC
1 AGCTCACTCAAGCTCAAGTC
* *
76335597 AACTCACTCAAGCTCAATTC
1 AGCTCACTCAAGCTCAAGTC
76335617 AGCTCA
1 AGCTCA
76335623 ATCTTAACCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.35, G:0.13, T:0.22
Consensus pattern (20 bp):
AGCTCACTCAAGCTCAAGTC
Found at i:76338540 original size:20 final size:20
Alignment explanation
Indices: 76338517--76338570 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
76338507 AGTTTTTCCC
*
76338517 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
76338537 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
76338557 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
76338571 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:76338552 original size:30 final size:30
Alignment explanation
Indices: 76338517--76338590 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
76338507 AGTTTTTCCC
76338517 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
76338547 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
76338577 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
76338591 TGGCTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:76338580 original size:20 final size:20
Alignment explanation
Indices: 76338517--76338581 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
76338507 AGTTTTTCCC
* * * *
76338517 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
76338537 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
76338556 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
76338577 AGCTC
1 AGCTC
76338582 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:76340455 original size:27 final size:27
Alignment explanation
Indices: 76340407--76340460 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
76340397 AAATCGTAGC
* *
76340407 TTCGAAAAAAAAAGTTAAAAAAAAAGT
1 TTCGAAAAAAAAAATCAAAAAAAAAGT
76340434 TTCGAAAAAAAAAATCCGAAAAAAAAA
1 TTCGAAAAAAAAAAT-C-AAAAAAAAA
76340461 AGAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 14 0.61
29 9 0.39
ACGTcount: A:0.69, C:0.07, G:0.09, T:0.15
Consensus pattern (27 bp):
TTCGAAAAAAAAAATCAAAAAAAAAGT
Found at i:76340548 original size:1 final size:1
Alignment explanation
Indices: 76340542--76340572 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
76340532 AAATATCCGT
76340542 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
76340573 GAGTCTGGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:76341266 original size:15 final size:15
Alignment explanation
Indices: 76341234--76341267 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
76341224 GTTCAACGAA
*
76341234 GAGGCCAACGCAACC
1 GAGGCCAACGAAACC
*
76341249 GAGGCCAACGAAATC
1 GAGGCCAACGAAACC
76341264 GAGG
1 GAGG
76341268 GAGGTTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.32, T:0.03
Consensus pattern (15 bp):
GAGGCCAACGAAACC
Found at i:76345840 original size:28 final size:26
Alignment explanation
Indices: 76345809--76345872 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
76345799 AATTACTTGA
* *
76345809 ATACCCCTATGTATGGAAAATTACTACT
1 ATACCCCTA-G-ATGCAAAATTACAACT
* *
76345837 ATACCCCTAGGTGCAAAATTACAATT
1 ATACCCCTAGATGCAAAATTACAACT
76345863 ATACCCCTAG
1 ATACCCCTAG
76345873 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACAACT
Found at i:76346081 original size:54 final size:54
Alignment explanation
Indices: 76345977--76346097 Score: 147
Period size: 54 Copynumber: 2.2 Consensus size: 54
76345967 AGGAAGCGTC
* *
76345977 CTGGTGGCCATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCCATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTGTT
* * *
76346031 CTGGTGGCTC-TGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGC-CATGCCACAATTATCT-AATCTAGTGACTCTGCCACATATATCTGTT
**
76346085 CTGGAAGCCATGC
1 CTGGTGGCCATGC
76346098 TGCATATTTC
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
53 1 0.02
54 38 0.67
55 18 0.32
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (54 bp):
CTGGTGGCCATGCCACAATTATCTAATCTAGTGACTCTGCCACATATATCTGTT
Found at i:76346082 original size:27 final size:27
Alignment explanation
Indices: 76345977--76346088 Score: 124
Period size: 27 Copynumber: 4.1 Consensus size: 27
76345967 AGGAAGCGTC
*
76345977 CTGGTGGC-CATGCCACAATTATCT-AAT
1 CTGGTGGCTC-TGCCAC-ATTATCTGTAT
76346004 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACAT-TATCTGTAT
76346031 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGTAT
* * *
76346059 CTAGTGACTCTGTCACATTATCTGT-T
1 CTGGTGGCTCTGCCACATTATCTGTAT
76346085 CTGG
1 CTGG
76346089 AAGCCATGCT
Statistics
Matches: 75, Mismatches: 5, Indels: 11
0.82 0.05 0.12
Matches are distributed among these distances:
26 6 0.08
27 52 0.69
28 17 0.23
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTATCTGTAT
Found at i:76353872 original size:27 final size:26
Alignment explanation
Indices: 76353840--76353951 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
76353830 AGGAAGCGTC
*
76353840 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
76353867 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
76353894 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
76353922 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
76353948 CTGG
1 CTGG
76353952 CAGCCATGCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 7 0.09
27 52 0.68
28 17 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:76353944 original size:54 final size:54
Alignment explanation
Indices: 76353840--76353951 Score: 172
Period size: 54 Copynumber: 2.1 Consensus size: 54
76353830 AGGAAGCGTC
*
76353840 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
76353894 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
76353948 CTGG
1 CTGG
76353952 CAGCCATGCT
Statistics
Matches: 53, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:76359600 original size:42 final size:42
Alignment explanation
Indices: 76359451--76359613 Score: 168
Period size: 42 Copynumber: 3.9 Consensus size: 42
76359441 ATACCAATGT
** *
76359451 CATATCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATAACGATGC
* * * * * * *
76359493 TAATAGCCCAGCTATGGTTTTACACG-ATTCTCATATCGATGC
1 -CATATCCCAGATATGGTCTTACATGAAATCTCATAACGATGC
* * *
76359535 CATGTCCCAGACATGGTTTTACATGAAATCTCATAACGATGC
1 CATATCCCAGATATGGTCTTACATGAAATCTCATAACGATGC
*
76359577 CATATCTCAGATATGGTCTTACATGTAAA-CTCATAAC
1 CATATCCCAGATATGGTCTTACATG-AAATCTCATAAC
76359614 CCTAATGTCA
Statistics
Matches: 99, Mismatches: 19, Indels: 5
0.80 0.15 0.04
Matches are distributed among these distances:
41 19 0.19
42 57 0.58
43 23 0.23
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACATGAAATCTCATAACGATGC
Found at i:76364798 original size:37 final size:37
Alignment explanation
Indices: 76364748--76364826 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76364738 TTATTACGAA
* * *
76364748 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
76364785 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
76364822 GTCTT
1 GTCTT
76364827 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:76365023 original size:47 final size:47
Alignment explanation
Indices: 76364945--76365381 Score: 649
Period size: 47 Copynumber: 9.2 Consensus size: 47
76364935 CCCTTCGGGA
* * * * * **
76364945 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
76364992 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
76365039 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
76365086 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
76365135 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
76365182 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
76365231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
76365278 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
76365326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
76365373 ATTATCACA
1 CTTATCACA
76365382 ATTTAGAATT
Statistics
Matches: 356, Mismatches: 29, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
47 224 0.63
48 45 0.13
49 87 0.24
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:76365140 original size:96 final size:95
Alignment explanation
Indices: 76364945--76365383 Score: 657
Period size: 96 Copynumber: 4.6 Consensus size: 95
76364935 CCCTTCGGGA
** * * * * * * *
76364945 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCAC-ATATATACA
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
76365009 CTTTCACATTCATCACATCGGCCATTAAGC
66 CTTTCACATTCATCACATCGGCCATTAAGC
* *
76365039 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
* *
76365104 ACTTTCACATTCATCACATCGGCTATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
76365135 CTTATCGCACATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-ATATATAC
*
76365200 ACTTTCACATTCATCACATCGGCCATTAGGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
76365231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCAC-ATATATAC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACAATATATAC
76365295 ACTTTCACATTCATCACATCGGCCATTAAGC
65 ACTTTCACATTCATCACATCGGCCATTAAGC
* *
76365326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCATTATCACAAT
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAAT
76365384 TTAGAATTCA
Statistics
Matches: 318, Mismatches: 23, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
94 48 0.15
95 89 0.28
96 177 0.56
97 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (95 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACA
CTTTCACATTCATCACATCGGCCATTAAGC
Found at i:76365243 original size:143 final size:141
Alignment explanation
Indices: 76364945--76365381 Score: 694
Period size: 143 Copynumber: 3.1 Consensus size: 141
76364935 CCCTTCGGGA
* * * * * * *
76364945 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
**
76365010 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACGCATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACATC
*
76365075 GGCCATTAAGC
131 GGCCATTAGGC
* * * *
76365086 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCGCACATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
76365151 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAAGCCTTATCAC--ATATATACACTTTCACATTCATCA
76365216 CATCGGCCATTAGGC
127 CATCGGCCATTAGGC
76365231 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA-TCACATATATACA
76365296 CTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACAT
76365361 CGGCCATTAGGC
130 CGGCCATTAGGC
*
76365373 ATTATCACA
1 CTTATCACA
76365382 ATTTAGAATT
Statistics
Matches: 272, Mismatches: 19, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
141 8 0.03
142 47 0.17
143 124 0.46
144 49 0.18
145 44 0.16
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:76370569 original size:47 final size:47
Alignment explanation
Indices: 76370511--76371452 Score: 904
Period size: 47 Copynumber: 19.4 Consensus size: 47
76370501 CAGCCAAGAC
* *
76370511 AGTGTATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76370558 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
76370605 AGTGTATATTTATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
76370654 AGTGTATATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76370701 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76370748 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76370795 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76370842 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
76370891 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
** * * * *
76370938 AGTGTATTGATGAATGTGA-AAGTGTATATATATG-TGATAAG-GCCT-AATG-G-C
1 AGTGTA-T-AT--ATGTGATAAG-GCCTA-AT-GGCCGAT--GTG-ATGAATGTGAA
* * * *
76370989 CGATGTGATGA-ATGTGA-AAGTG--TATATGTG-TGATAAG-GCCT-AATAGCCG-A
1 AG-TGT-AT-ATATGTGATAAG-GCCTA-ATG-GCCGAT--GTG-ATGAAT-G-TGAA
* * * * * *
76371039 TGTGATGAATGTGAAAGTGTATATATGTG-ATAA-GGCCTAATAGCCGATG--TGATGAA
1 AGTG-T--ATAT--ATGTG-ATA-A-G-GCCTAATGGCC-GAT-G-TGATGAATG-TGAA
* * *
76371095 TGTG-A-A-A-GTGTATATATGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTG-ATA-A-G-GCCTAA---T----GGCCGATGTGATGAATGTGAA
*
76371148 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76371197 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76371244 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76371293 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76371340 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * *
76371387 AGTGTATATATGTGACAGGGCCGAGTGGACAACGAGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
76371434 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
76371453 TCCCGAAGGG
Statistics
Matches: 790, Mismatches: 50, Indels: 110
0.83 0.05 0.12
Matches are distributed among these distances:
47 505 0.64
48 3 0.00
49 179 0.23
50 6 0.01
51 11 0.01
52 17 0.02
53 19 0.02
54 7 0.01
55 9 0.01
56 15 0.02
57 9 0.01
58 7 0.01
59 3 0.00
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Done.