Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 238 of 295
Found at i:76370632 original size:96 final size:94
Alignment explanation
Indices: 76370511--76371452 Score: 1330
Period size: 96 Copynumber: 9.7 Consensus size: 94
76370501 CAGCCAAGAC
* *
76370511 AGTGTATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76370576 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* * *
76370605 AGTGTATATTTATGTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGAGAT
1 AGTGTATA--TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
76370670 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
76370701 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76370766 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
76370795 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
76370860 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
76370891 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATTGATGAATGTG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA-T-AT--ATGTG
** * * * *
76370956 A-AAGTGTATATATATG-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
62 ATAAG-GCCTA-AT-GGCCGAT---G--TGAT-G--AATGTG---------AA
* *
76371007 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
76371072 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
76371101 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
*
76371166 AAGGCCTAATAGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
76371197 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
76371262 AAGGCCTAATGGCCGATGTGATGAATGTGAA
64 AAGGCCTAATGGCCGATGTGATGAATGTGAA
76371293 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76371358 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * * * * * *
76371387 AGTGTATATATGTGACAGGGCCGAGTGGACAACGAGATGGATGTGAAAGTGCATAAATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
76371452 G
66 G
76371453 TCCCGAAGGG
Statistics
Matches: 780, Mismatches: 36, Indels: 64
0.89 0.04 0.07
Matches are distributed among these distances:
94 293 0.38
95 1 0.00
96 372 0.48
97 3 0.00
98 9 0.01
99 5 0.01
100 1 0.00
102 1 0.00
103 5 0.01
104 3 0.00
105 2 0.00
106 3 0.00
107 5 0.01
108 1 0.00
110 1 0.00
111 5 0.01
112 9 0.01
113 3 0.00
114 2 0.00
115 1 0.00
116 55 0.07
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:76370805 original size:143 final size:142
Alignment explanation
Indices: 76370511--76371400 Score: 1187
Period size: 143 Copynumber: 6.1 Consensus size: 142
76370501 CAGCCAAGAC
* *
76370511 AGTGTATATATGT-GATAAGACCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
1 AGTGTATATATGTGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
*
76370575 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATTTATGTGATAAGGACTAATGGCCGAT
66 AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA--TATGTGATAAGGCCTAATGGCCGAT
76370640 GTGATGAATGTGAA
129 GTGATGAATGTGAA
76370654 AGTG--TATATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGTATATATGTG-GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
76370717 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
65 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
76370782 TGATGAATGTGAA
130 TGATGAATGTGAA
76370795 AGTGTATATATGT-GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 AGTGTATATATGTGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* *
76370859 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
64 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
76370924 GTGATGAATGTGAA
129 GTGATGAATGTGAA
* * **
76370938 AGTGTATTGATGAATGTGAAAGTGTATATATATGTG-ATAA-GGCCTAATG-GCCG-ATGTGATG
1 AGTGTA-T-AT--ATGT----G-G---ATA-A-G-GCCTAATGGCC-GATGTGATGAATGTGA--
* ** * *
76370999 AA-TGTGA-A-A-GTGTATATGTGTGATAA-GGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
48 AAGTGT-ATATATGTG-ATAAG-G-CCTAATGGCC-GAT-G-TGATG-----AATGTGAAAGTGT
*
76371059 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
101 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
76371101 AGTGTATATATGT-GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 AGTGTATATATGTGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76371165 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
64 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
76371230 GTGATGAATGTGAA
129 GTGATGAATGTGAA
*
76371244 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGTATATATGTG-GATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
76371309 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
65 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
76371374 TGATGAATGTGAA
130 TGATGAATGTGAA
76371387 AGTGTATATATGTG
1 AGTGTATATATGTG
76371401 ACAGGGCCGA
Statistics
Matches: 668, Mismatches: 29, Indels: 100
0.84 0.04 0.13
Matches are distributed among these distances:
141 87 0.13
143 360 0.54
144 1 0.00
145 40 0.06
147 5 0.01
148 13 0.02
149 10 0.01
150 15 0.02
151 6 0.01
152 5 0.01
153 8 0.01
154 5 0.01
155 7 0.01
156 15 0.02
157 10 0.01
158 13 0.02
159 5 0.01
161 2 0.00
162 1 0.00
163 60 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (142 bp):
AGTGTATATATGTGGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGT
GATGAATGTGAA
Found at i:76370950 original size:20 final size:20
Alignment explanation
Indices: 76370925--76370964 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76370915 ATAGCCGATG
76370925 TGATGAATGTGAAAGTGTAT
1 TGATGAATGTGAAAGTGTAT
76370945 TGATGAATGTGAAAGTGTAT
1 TGATGAATGTGAAAGTGTAT
76370965 ATATATGTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.30, T:0.35
Consensus pattern (20 bp):
TGATGAATGTGAAAGTGTAT
Found at i:76370958 original size:163 final size:162
Alignment explanation
Indices: 76370782--76371107 Score: 591
Period size: 163 Copynumber: 2.0 Consensus size: 162
76370772 ATGGCCGATG
76370782 TGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
76370846 TATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGG
66 --TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
76370911 CCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
129 CCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
76370945 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
76371010 GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
65 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
76371075 CTAATAGCCGATGTGATGAATGTGAAAGTGTAT
130 CTAATAGCCGATGTGATGAATGTGAAAGTGTAT
76371108 ATATGTGATA
Statistics
Matches: 158, Mismatches: 3, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
163 111 0.70
165 47 0.30
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (162 bp):
TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:76370959 original size:116 final size:116
Alignment explanation
Indices: 76370829--76371060 Score: 464
Period size: 116 Copynumber: 2.0 Consensus size: 116
76370819 ATGGCCGATG
76370829 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
76370894 GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
66 GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
76370945 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
76371010 GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
66 GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
76371061 ATATGTGATA
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 116 1.00
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (116 bp):
TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:76370963 original size:210 final size:209
Alignment explanation
Indices: 76370735--76371154 Score: 761
Period size: 210 Copynumber: 2.0 Consensus size: 209
76370725 ATGGCCGATG
76370735 TGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
76370799 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
66 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
* *
76370864 CCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAT
129 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGAT
76370929 GAATGTGAAAGTGTAT
194 GAATGTGAAAGTGTAT
76370945 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
*
76371010 GTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
65 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
76371075 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
130 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
76371140 AATGTGAAAGTGTAT
195 AATGTGAAAGTGTAT
76371155 ATATATGTGA
Statistics
Matches: 203, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
210 111 0.55
212 92 0.45
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (209 bp):
TGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
ATGTGAAAGTGTAT
Found at i:76370979 original size:69 final size:67
Alignment explanation
Indices: 76370878--76371013 Score: 236
Period size: 69 Copynumber: 2.0 Consensus size: 67
76370868 ATGGCCGATG
*
76370878 TGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
76370943 AT
66 AT
*
76370945 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
1 TGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
76371010 GTAT
64 GTAT
76371014 ATGTGTGATA
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
67 17 0.26
69 48 0.74
ACGTcount: A:0.33, C:0.06, G:0.29, T:0.32
Consensus pattern (67 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
AT
Found at i:76371640 original size:37 final size:37
Alignment explanation
Indices: 76371571--76371649 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
76371561 CCGAGCTCTA
* * *
76371571 AAGACCCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTATGGGAATTATGTCCGGGT
*
76371608 AAGACCCGATAACTTCGTAT-GGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTATGGGA-ATTATGTCCGGGT
76371645 AAGAC
1 AAGAC
76371650 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 3 0.08
37 34 0.92
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTATGGGAATTATGTCCGGGT
Found at i:76375476 original size:43 final size:43
Alignment explanation
Indices: 76375310--76375477 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 43
76375300 CATAAGCTCG
* * * *
76375310 TACAATGCC-ATATCCCAGATATGGTCTTACATGTTATTAC-A
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
* * * * * * *
76375351 TATCGATGGCACTGTCCCAGATAGGGTCTTACATGAAATTGA-AGA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACATGTAA-TCACA-A
* ** *
76375396 -ACGATGCCAATGT-CCA-ACATGGTCTTACACATGATCACAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
76375436 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
76375478 TCTCGATAAC
Statistics
Matches: 97, Mismatches: 21, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
40 3 0.03
41 27 0.28
42 11 0.11
43 52 0.54
44 3 0.03
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAA
Found at i:76377078 original size:90 final size:89
Alignment explanation
Indices: 76376908--76377149 Score: 281
Period size: 90 Copynumber: 2.7 Consensus size: 89
76376898 GAAAATGGAT
* * *
76376908 AGCTTCAAGCTAAC-AAATATGAAAAGGGATAACTTC-GACTATCGATTATGAAAAGGGATGGTG
1 AGCTTCAA-CTATCGAACTATGAAAAGGGATAACTTCAG-CTATCAATTATGAAAAGGGATGGTG
* * *
76376971 ACGGCCATCAAACTATGAATAGAGAT
64 ACGACCATCAAACTATGAAAAGAGAC
* ** ** *
76376997 GGCTTCGGCTATCGATTTATGAAAAGGGATAACTTCAGCTATCAATTTATGAAAAGAGATGGTGA
1 AGCTTCAACTATCGAACTATGAAAAGGGATAACTTCAGCTATCAA-TTATGAAAAGGGATGGTGA
** *
76377062 CGACCATCAAGTTATGAAAAGGGAC
65 CGACCATCAAACTATGAAAAGAGAC
*
76377087 AGCTTCAACTATCGAACTATGAAAAAGGGATAACTTCAGTTATCAAATTATGAAAAGGGATGG
1 AGCTTCAACTATCGAACTATG-AAAAGGGATAACTTCAGCTATC-AATTATGAAAAGGGATGG
76377150 GTTAACCATC
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
88 4 0.03
89 31 0.24
90 54 0.43
91 36 0.28
92 2 0.02
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (89 bp):
AGCTTCAACTATCGAACTATGAAAAGGGATAACTTCAGCTATCAATTATGAAAAGGGATGGTGAC
GACCATCAAACTATGAAAAGAGAC
Found at i:76377108 original size:30 final size:30
Alignment explanation
Indices: 76377074--76377146 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
76377064 ACCATCAAGT
* *
76377074 TATGAAAAGGGACAGCTTCAACTATCGAAC
1 TATGAAAAGGGACAACTTCAACTATCAAAC
* ** *
76377104 TATGAAAAAGGGATAACTTCAGTTATCAAAT
1 TATG-AAAAGGGACAACTTCAACTATCAAAC
76377135 TATGAAAAGGGA
1 TATGAAAAGGGA
76377147 TGGGTTAACC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
30 12 0.33
31 24 0.67
ACGTcount: A:0.44, C:0.12, G:0.21, T:0.23
Consensus pattern (30 bp):
TATGAAAAGGGACAACTTCAACTATCAAAC
Found at i:76377147 original size:30 final size:30
Alignment explanation
Indices: 76376896--76377147 Score: 138
Period size: 30 Copynumber: 8.4 Consensus size: 30
76376886 TCATCGACAA
* * *
76376896 ATGAAAATGGATAGCTTCAAGCTAACAAA-T
1 ATGAAAAGGGATAACTTC-AGCTATCAAATT
*
76376926 ATGAAAAGGGATAACTTC-GACTATC-GATT
1 ATGAAAAGGGATAACTTCAG-CTATCAAATT
** * * * *
76376955 ATGAAAAGGGAT-GGTGACGGCCATCAAACT
1 ATGAAAAGGGATAACT-TCAGCTATCAAATT
* * ** * * *
76376985 ATGAATAGAGATGGCTTCGGCTATCGATTT
1 ATGAAAAGGGATAACTTCAGCTATCAAATT
*
76377015 ATGAAAAGGGATAACTTCAGCTATCAATTT
1 ATGAAAAGGGATAACTTCAGCTATCAAATT
* ** * * *
76377045 ATGAAAAGAGAT--GGTGACGACCATCAAGTT
1 ATGAAAAGGGATAACTTCA-G-CTATCAAATT
* * * * *
76377075 ATGAAAAGGGACAGCTTCAACTATCGAACT
1 ATGAAAAGGGATAACTTCAGCTATCAAATT
*
76377105 ATGAAAAAGGGATAACTTCAGTTATCAAATT
1 ATG-AAAAGGGATAACTTCAGCTATCAAATT
76377136 ATGAAAAGGGAT
1 ATGAAAAGGGAT
76377148 GGGTTAACCA
Statistics
Matches: 165, Mismatches: 46, Indels: 22
0.71 0.20 0.09
Matches are distributed among these distances:
28 5 0.03
29 23 0.14
30 109 0.66
31 26 0.16
32 2 0.01
ACGTcount: A:0.40, C:0.13, G:0.22, T:0.25
Consensus pattern (30 bp):
ATGAAAAGGGATAACTTCAGCTATCAAATT
Found at i:76382793 original size:25 final size:25
Alignment explanation
Indices: 76382756--76382807 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
76382746 TGAATTCGTG
* *
76382756 TATAGTAATAGTTATCAATCGAGCA
1 TATAATAACAGTTATCAATCGAGCA
*
76382781 TATAATAACAGTTATCAGTCGAGCA
1 TATAATAACAGTTATCAATCGAGCA
76382806 TA
1 TA
76382808 AAGATGGCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.31
Consensus pattern (25 bp):
TATAATAACAGTTATCAATCGAGCA
Found at i:76384681 original size:29 final size:29
Alignment explanation
Indices: 76384617--76384716 Score: 137
Period size: 29 Copynumber: 3.4 Consensus size: 29
76384607 CCATCAACAA
* * * *
76384617 ATGAAAATGGATAGCTTCGGGCTAACGAAT
1 ATGAAAAGGGATAGCTT-TGGCTATCGATT
*
76384647 ACGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
76384676 ATGAAAAGGGATAGCTTTGGCTATCGATT
1 ATGAAAAGGGATAGCTTTGGCTATCGATT
*
76384705 ATGAAAACGGAT
1 ATGAAAAGGGAT
76384717 GGTGATGACC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
29 48 0.76
30 15 0.24
ACGTcount: A:0.35, C:0.12, G:0.27, T:0.26
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTTGGCTATCGATT
Found at i:76388093 original size:30 final size:30
Alignment explanation
Indices: 76388016--76388100 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 30
76388006 TACATAGCTT
76388016 CGACTATTGAATTATGAAAAGGGATGGTGA
1 CGACTATTGAATTATGAAAAGGGATGGTGA
* * **
76388046 CAACTATGGAACAATGAAAAGGGATGGTGA
1 CGACTATTGAATTATGAAAAGGGATGGTGA
* *
76388076 CGACCATTAAATTATGAAAAGGGAT
1 CGACTATTGAATTATGAAAAGGGAT
76388101 AGCTCCAGCT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.41, C:0.09, G:0.27, T:0.22
Consensus pattern (30 bp):
CGACTATTGAATTATGAAAAGGGATGGTGA
Found at i:76394770 original size:23 final size:23
Alignment explanation
Indices: 76394737--76394844 Score: 87
Period size: 24 Copynumber: 4.6 Consensus size: 23
76394727 AACAAATTCT
*
76394737 TTTTTCATTTTCATCACTCGTTTC
1 TTTTTC-TTTTCATCACTCTTTTC
* *
76394761 TTTTTCTTTTGAATCACTC-TCTC
1 TTTTTCTTTT-CATCACTCTTTTC
* *
76394784 TTTTT-TTATCACTCA-TCTTTTG
1 TTTTTCTTTTCA-TCACTCTTTTC
*
76394806 TTTTTCTTCTTTCTTCACTCTTTTC
1 TTTTTC-T-TTTCATCACTCTTTTC
76394831 TTTATTCTTTTCAT
1 TTT-TTCTTTTCAT
76394845 TTTTTTGCTC
Statistics
Matches: 66, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
21 3 0.05
22 13 0.20
23 12 0.18
24 22 0.33
25 13 0.20
26 3 0.05
ACGTcount: A:0.11, C:0.23, G:0.03, T:0.63
Consensus pattern (23 bp):
TTTTTCTTTTCATCACTCTTTTC
Found at i:76397056 original size:14 final size:14
Alignment explanation
Indices: 76397037--76397064 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76397027 CTAGACCGTA
76397037 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
76397051 TGCAATTTTTTTTT
1 TGCAATTTTTTTTT
76397065 CAAAGCTACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (14 bp):
TGCAATTTTTTTTT
Found at i:76399924 original size:20 final size:19
Alignment explanation
Indices: 76399901--76399965 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
76399891 AAGCTCAAAC
76399901 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
76399921 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
76399941 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
76399961 GAGCT
1 GAGCT
76399966 GGGAAAACTA
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:76401869 original size:29 final size:27
Alignment explanation
Indices: 76401829--76401894 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 27
76401819 TTTTTGGCTT
76401829 TTTCTTTTTCAATTTT-TTTTCATTCTCAA
1 TTTCTTTTTCAATTTTCTTTTC--T-TCAA
*
76401858 TTTCTTTTTCAATTTTCTTTTCTTCAT
1 TTTCTTTTTCAATTTTCTTTTCTTCAA
76401885 TTTCTTTTTC
1 TTTCTTTTTC
76401895 TCTCACTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
27 13 0.37
28 1 0.03
29 16 0.46
30 5 0.14
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (27 bp):
TTTCTTTTTCAATTTTCTTTTCTTCAA
Found at i:76401878 original size:12 final size:12
Alignment explanation
Indices: 76401795--76401894 Score: 52
Period size: 12 Copynumber: 8.5 Consensus size: 12
76401785 TCACTTGATT
**
76401795 TTTTTCAAGCTC
1 TTTTTCAATTTC
*
76401807 TCTTTCAATTTC
1 TTTTTCAATTTC
**
76401819 TTTTTGGCTTTTTC
1 TTTTT--CAATTTC
76401833 TTTTTCAATTT-
1 TTTTTCAATTTC
76401844 TTTTTC-A-TTC
1 TTTTTCAATTTC
76401854 ----TCAATTTC
1 TTTTTCAATTTC
76401862 TTTTTCAATTTTC
1 TTTTTCAA-TTTC
*
76401875 TTTTCTTCATTTTC
1 -TTT-TTCAATTTC
76401889 TTTTTC
1 TTTTTC
76401895 TCTCACTTTT
Statistics
Matches: 67, Mismatches: 9, Indels: 24
0.67 0.09 0.24
Matches are distributed among these distances:
6 2 0.03
7 1 0.01
8 3 0.04
9 2 0.03
10 1 0.01
11 6 0.09
12 24 0.36
13 7 0.10
14 17 0.25
15 4 0.06
ACGTcount: A:0.12, C:0.19, G:0.03, T:0.66
Consensus pattern (12 bp):
TTTTTCAATTTC
Found at i:76401879 original size:18 final size:17
Alignment explanation
Indices: 76401828--76401939 Score: 59
Period size: 17 Copynumber: 6.5 Consensus size: 17
76401818 CTTTTTGGCT
*
76401828 TTTTCTTTTTCAATTTT
1 TTTTCTTTTTCAATTTC
* *
76401845 TTTTCATTCTCAATTTC
1 TTTTCTTTTTCAATTTC
*
76401862 TTTTTCAATTTTC--TTT-
1 -TTTTC-TTTTTCAATTTC
* * **
76401878 TCTTCATTTTCTTTTTC
1 TTTTCTTTTTCAATTTC
** *
76401895 TCTCACTTTTTCGATTTC
1 T-TTTCTTTTTCAATTTC
*
76401913 TTTTCTTTTGCAATTTC
1 TTTTCTTTTTCAATTTC
76401930 TTTTTCTTTT
1 -TTTTCTTTT
76401940 GTTTTCTTTC
Statistics
Matches: 73, Mismatches: 15, Indels: 13
0.72 0.15 0.13
Matches are distributed among these distances:
14 6 0.08
15 4 0.05
16 3 0.04
17 30 0.41
18 25 0.34
19 5 0.07
ACGTcount: A:0.11, C:0.19, G:0.02, T:0.69
Consensus pattern (17 bp):
TTTTCTTTTTCAATTTC
Found at i:76401906 original size:68 final size:67
Alignment explanation
Indices: 76401807--76401959 Score: 175
Period size: 68 Copynumber: 2.2 Consensus size: 67
76401797 TTTCAAGCTC
* ** *
76401807 TCTTTCAATTTCTTTTTGGCTTTTTCTTTTTCAATTTTTTTTCATTCT-CAATTTCTTTTTCAAT
1 TCTTTCAATTTCTTTTT--CTCTCACTTTTTCAATTTCTTTTC-TTCTGCAATTTCTTTTTC--T
76401871 TTTCTTT
61 TTTCTTT
* * * *
76401878 TC-TTCATTTTCTTTTTCTCTCACTTTTTCGATTTCTTTTCTTTTGCAATTTCTTTTTCTTTTGT
1 TCTTTCAATTTCTTTTTCTCTCACTTTTTCAATTTCTTTTCTTCTGCAATTTCTTTTTCTTTTCT
76401942 TT
66 TT
76401944 TCTTTCAATTTCTTTT
1 TCTTTCAATTTCTTTT
76401960 CAATCTCTTT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
66 9 0.13
67 15 0.21
68 32 0.45
70 13 0.18
71 2 0.03
ACGTcount: A:0.10, C:0.18, G:0.03, T:0.68
Consensus pattern (67 bp):
TCTTTCAATTTCTTTTTCTCTCACTTTTTCAATTTCTTTTCTTCTGCAATTTCTTTTTCTTTTCT
TT
Found at i:76403038 original size:28 final size:29
Alignment explanation
Indices: 76402962--76403040 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 29
76402952 GCAAGACTTT
* **
76402962 TCAC-TTTTTTTAACTTGATTTTTTTTGC
1 TCACTTTTTTTTCACTTCTTTTTTTTTGC
* *
76402990 TCACTTTCTTTTC-TTTCTTTTTTTTTGC
1 TCACTTTTTTTTCACTTCTTTTTTTTTGC
76403018 TCGA-TTTTTTTTCACTT-TTTTTT
1 TC-ACTTTTTTTTCACTTCTTTTTT
76403041 GAATTTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
28 32 0.78
29 9 0.22
ACGTcount: A:0.09, C:0.16, G:0.05, T:0.70
Consensus pattern (29 bp):
TCACTTTTTTTTCACTTCTTTTTTTTTGC
Found at i:76403048 original size:12 final size:12
Alignment explanation
Indices: 76403033--76403058 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76403023 TTTTTTTCAC
76403033 TTTTTTTTGAAT
1 TTTTTTTTGAAT
76403045 TTTTTTTTGAAT
1 TTTTTTTTGAAT
76403057 TT
1 TT
76403059 CGATTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTTTTTTTGAAT
Found at i:76405212 original size:29 final size:28
Alignment explanation
Indices: 76405177--76405252 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 28
76405167 ATGAGATTGG
76405177 CACTAAGTGTGCGGGTTTAAATTGTACA-A
1 CACTAAGTGTGCGGGTTTAAA--GTACAGA
* * *
76405206 CACTAAGTGTGTGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGGGTTTAAAGTACA-GA
76405235 CACTAAGTGTGCGCGGTT
1 CACTAAGTGTGCG-GGTT
76405253 GATTATTAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 5 0.13
29 31 0.79
30 3 0.08
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGGGTTTAAAGTACAGA
Found at i:76405470 original size:174 final size:174
Alignment explanation
Indices: 76405206--76405706 Score: 948
Period size: 174 Copynumber: 2.9 Consensus size: 174
76405196 AATTGTACAA
76405206 CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
76405271 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
76405336 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
* *
76405380 CACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTGAGCACTATGT
1 CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
76405445 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
76405510 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
76405554 CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
* * * *
76405619 GTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTACGACTTTACCGAGTCAAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
76405684 TTTGGACAGCGGAAAAGGTAAGT
131 TTTGGACAGCGGAAAAGGTAAGT
76405707 ACCTTGAGTT
Statistics
Matches: 319, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
174 319 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
Found at i:76408196 original size:20 final size:19
Alignment explanation
Indices: 76408173--76408237 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
76408163 AAGCTCAAAC
76408173 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
76408193 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
76408213 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
76408233 GAGCT
1 GAGCT
76408238 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:76410392 original size:19 final size:19
Alignment explanation
Indices: 76410364--76410403 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
76410354 GGAGAGTGAA
76410364 AAAAACGAGAAAA-GGGCC
1 AAAAACGAGAAAATGGGCC
76410382 AAAAACGGAGAAAATGGGCC
1 AAAAAC-GAGAAAATGGGCC
76410402 AA
1 AA
76410404 CGTACAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.30
19 7 0.35
20 7 0.35
ACGTcount: A:0.55, C:0.15, G:0.28, T:0.03
Consensus pattern (19 bp):
AAAAACGAGAAAATGGGCC
Found at i:76414461 original size:39 final size:39
Alignment explanation
Indices: 76414407--76414520 Score: 160
Period size: 39 Copynumber: 2.9 Consensus size: 39
76414397 AGTGATGAAG
**
76414407 TATATCC-AGACTTAAGGTCCATAGGCTATGTGCTGGAAT
1 TATATCCGA-ACTTAAGGTCCGCAGGCTATGTGCTGGAAT
76414446 TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
* *
76414485 TATAAT-CGGACTTAAGGTCCGCAGGCTACGTGCTGG
1 TAT-ATCCGAACTTAAGGTCCGCAGGCTATGTGCTGG
76414521 CAATATGTCC
Statistics
Matches: 69, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
39 66 0.96
40 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (39 bp):
TATATCCGAACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:76419331 original size:94 final size:94
Alignment explanation
Indices: 76418879--76419318 Score: 799
Period size: 94 Copynumber: 4.7 Consensus size: 94
76418869 AAGGTGACCG
* * * *
76418879 TATATGCTATTTAAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTACG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
*
76418944 GAATTAAATGTCACTTTGTGTGTAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
76418973 TATATGCTATTTGAATTAAGTAAATTTCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
76419038 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
76419067 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
76419132 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
76419161 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
76419226 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGTCACTTTGTGTGCAGATTT
* *
76419255 TATATGCTATTTGAATTAAGTAAATTACCTTATTATAATGAGTTAACATTGGCACTATATGTGC
1 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGC
76419319 AGATTTGAAT
Statistics
Matches: 335, Mismatches: 11, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 335 1.00
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.41
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCG
GAATTAAATGTCACTTTGTGTGCAGATTT
Found at i:76419385 original size:24 final size:24
Alignment explanation
Indices: 76419353--76419416 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
76419343 GAAAATTTCA
* *
76419353 GGCACTATGTGTGCG-GTTTAGTAT
1 GGCACTATGTGTGCGAGCTTAAT-T
76419377 GGCACTATGTGTGCGAGCTTAATT
1 GGCACTATGTGTGCGAGCTTAATT
*
76419401 AGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
76419417 ATTTGGTTGA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
24 31 0.86
25 5 0.14
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGCTTAATT
Found at i:76421761 original size:16 final size:16
Alignment explanation
Indices: 76421723--76421753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76421713 GTATGGGAGT
76421723 ATACATGAATGGTTGA
1 ATACATGAATGGTTGA
*
76421739 ATACATGAATTGTTG
1 ATACATGAATGGTTG
76421754 GATTCATGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.06, G:0.23, T:0.35
Consensus pattern (16 bp):
ATACATGAATGGTTGA
Found at i:76428429 original size:49 final size:49
Alignment explanation
Indices: 76428344--76428581 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
76428334 TAGCCGAAGC
* *
76428344 TATCTAGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
76428393 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AAT
* * * *
76428443 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-T
* * * *
76428494 TATCAGGTACGCATAGTAGCCTGCACTTAGTCCTACACATGCAACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
*
76428543 TATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACA
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
76428582 CGTGCCTCAC
Statistics
Matches: 160, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
49 76 0.47
50 46 0.29
51 38 0.24
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:76428530 original size:101 final size:98
Alignment explanation
Indices: 76428355--76428581 Score: 310
Period size: 100 Copynumber: 2.3 Consensus size: 98
76428345 ATCTAGTACG
* *
76428355 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACATAGTAGCCTGCACT
**
76428420 TAGTACTACACACGTGACCTAACCATCTGATACA
66 TAGTACTACACACGCAACC-AACCATCTGATACA
* * *
76428454 CATAGTAGCCTGCACTTAGTACTACACATGTGATCGAAGTTATCAGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCAGGTACACATAGTAGCCTGCA
* * ** *
76428519 CTTAGTCCTACACATGCAACCAATTATCTGGTACA
64 CTTAGTACTACACACGCAACCAACCATCTGATACA
*
76428554 CGTAGTAGCCTGCACTTAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
76428582 CGTGCCTCAC
Statistics
Matches: 113, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 32 0.28
100 41 0.36
101 40 0.35
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCAGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCAACCAACCATCTGATACA
Found at i:76431368 original size:15 final size:16
Alignment explanation
Indices: 76431339--76431372 Score: 61
Period size: 15 Copynumber: 2.2 Consensus size: 16
76431329 AACAGAGAAG
76431339 CCAAGAATAAAGAAAT
1 CCAAGAATAAAGAAAT
76431355 CCAAG-ATAAAGAAAT
1 CCAAGAATAAAGAAAT
76431370 CCA
1 CCA
76431373 TGGTACGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.59, C:0.18, G:0.12, T:0.12
Consensus pattern (16 bp):
CCAAGAATAAAGAAAT
Found at i:76434226 original size:49 final size:49
Alignment explanation
Indices: 76434126--76434355 Score: 266
Period size: 49 Copynumber: 4.7 Consensus size: 49
76434116 ATCTAGTACG
* * * *
76434126 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACA
* **
76434175 CGTAGTAG-CTGCACTTAGTACTACACACGTGACCAAACCATCTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCTGATACA
* * * * *
76434224 CGTAGTAGCCTGCACTTATTACTACACACGTGATCGAAGTTATC-AAGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCTGA-TACA
* * *
76434275 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACA
*
76434324 TATAGTAGCCTGCACTTAGTACTACACACGTG
1 CATAGTAGCCTGCACTTAGTACTACACACGTG
76434356 CCTCACAATA
Statistics
Matches: 151, Mismatches: 24, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
48 24 0.16
49 62 0.41
50 29 0.19
51 36 0.24
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCTGATACA
Found at i:76434333 original size:100 final size:98
Alignment explanation
Indices: 76434126--76434355 Score: 291
Period size: 100 Copynumber: 2.3 Consensus size: 98
76434116 ATCTAGTACG
* * ** *
76434126 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCTGCACTT
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAAGTACACATAGTAGCTGCACTT
*
76434191 AGTACTACACACGTGACCAAACCATCTGATACA
66 AGTACTACACACGCGACCAAACCATCTGATACA
* * * *
76434224 CGTAGTAGCCTGCACTTATTACTACACACGTGATCGAAGTTATCAAGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAAGTACACATAGTAG-CTGCA
* ** *
76434289 CTTAGTACTACACATGCGACC-AATTATCTGGTACA
63 CTTAGTACTACACACGCGACCAAACCATCTGATACA
*
76434324 TATAGTAGCCTGCACTTAGTACTACACACGTG
1 CATAGTAGCCTGCACTTAGTACTACACACGTG
76434356 CCTCACAATA
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
98 29 0.26
99 3 0.03
100 56 0.50
101 24 0.21
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAAGTACACATAGTAGCTGCACTT
AGTACTACACACGCGACCAAACCATCTGATACA
Found at i:76435037 original size:30 final size:29
Alignment explanation
Indices: 76435003--76435062 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
76434993 CCTTTAATAC
76435003 AAACTTTGGCAAAATTAC-CATTTTGCCCCT
1 AAACTTT-GCAAAATTACAC-TTTTGCCCCT
* *
76435033 AAACTTTTCATAATTACACTTTTGCCCCT
1 AAACTTTGCAAAATTACACTTTTGCCCCT
76435062 A
1 A
76435063 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 19 0.70
30 8 0.30
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (29 bp):
AAACTTTGCAAAATTACACTTTTGCCCCT
Found at i:76439341 original size:13 final size:13
Alignment explanation
Indices: 76439325--76439383 Score: 59
Period size: 12 Copynumber: 4.5 Consensus size: 13
76439315 CAAAAAAATC
76439325 AAAAAAAATTCGA
1 AAAAAAAATTCGA
*
76439338 AAAAAAAATTGATTGA
1 AAAAAAAA-T--TCGA
76439354 AAAAAAAATTC-A
1 AAAAAAAATTCGA
*
76439366 AAAAAAAAGT-GA
1 AAAAAAAATTCGA
76439378 AAAAAA
1 AAAAAA
76439384 TCGAGCAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
12 17 0.44
13 9 0.23
14 1 0.03
15 1 0.03
16 11 0.28
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTCGA
Found at i:76439368 original size:12 final size:12
Alignment explanation
Indices: 76439316--76439383 Score: 50
Period size: 12 Copynumber: 5.4 Consensus size: 12
76439306 TTGGAGTAAC
76439316 AAAAAAA-TC-A
1 AAAAAAATTCAA
76439326 AAAAAAATTCGAAA
1 AAAAAAATTC--AA
*
76439340 AAAAAATTGATTGAA
1 AAAAAA---ATTCAA
76439355 AAAAAAATTCAA
1 AAAAAAATTCAA
* *
76439367 AAAAAAAGTGAA
1 AAAAAAATTCAA
76439379 AAAAA
1 AAAAA
76439384 TCGAGCAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
10 7 0.15
11 2 0.04
12 20 0.43
14 7 0.15
15 8 0.17
17 3 0.06
ACGTcount: A:0.74, C:0.04, G:0.07, T:0.15
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:76439432 original size:29 final size:26
Alignment explanation
Indices: 76439364--76439435 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 26
76439354 AAAAAAAATT
*
76439364 CAAAAAAAAAGTG-AAAAAAATCGAG
1 CAAAAAAAAAGTGAAAAAAAATCAAG
76439389 CAAAAAAAAAGGTGACCAAAAAAATCAAG
1 CAAAAAAAAA-GTGA--AAAAAAATCAAG
*
76439418 TTAAAAAAAAAGTGAAAA
1 -CAAAAAAAAAGTGAAAA
76439436 GTCTTGCGAG
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
25 10 0.25
26 3 0.08
27 3 0.08
29 15 0.38
30 9 0.22
ACGTcount: A:0.68, C:0.08, G:0.14, T:0.10
Consensus pattern (26 bp):
CAAAAAAAAAGTGAAAAAAAATCAAG
Found at i:76440327 original size:18 final size:18
Alignment explanation
Indices: 76440306--76440340 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
76440296 AGAAAAGAAA
76440306 ATTGA-AAAAGAAATTGAG
1 ATTGAGAAAA-AAATTGAG
76440324 ATTGAGAAAAAAATTGA
1 ATTGAGAAAAAAATTGA
76440341 AAACGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (18 bp):
ATTGAGAAAAAAATTGAG
Found at i:76449222 original size:30 final size:30
Alignment explanation
Indices: 76449188--76449284 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
76449178 TAAACTAAAA
* *
76449188 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
76449218 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
76449248 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
76449278 TGAGCTA
1 TGAGCTA
76449285 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:76454013 original size:34 final size:33
Alignment explanation
Indices: 76453952--76454018 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 33
76453942 CTATTATTGA
* *
76453952 AATGGGCTAAGGCCCACACTGATACTGATACTGT
1 AATGGGCTAAGGCCCACACAGAAACTGA-ACTGT
*
76453986 AATGGGCTAAGGCCTTA-ACAGAAACTGAACTGT
1 AATGGGCTAAGGCC-CACACAGAAACTGAACTGT
76454019 TACTGATACG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 5 0.17
34 23 0.79
35 1 0.03
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (33 bp):
AATGGGCTAAGGCCCACACAGAAACTGAACTGT
Found at i:76459560 original size:50 final size:49
Alignment explanation
Indices: 76459487--76459762 Score: 179
Period size: 51 Copynumber: 5.5 Consensus size: 49
76459477 TTAGGTCACG
*
76459487 TGTGTAGTACTAAGTGCAAGCTACTACTTGTACCAGATAGTTAGGTCGAA
1 TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTA-GTCGAA
* * * * * * * * *
76459537 TATGTAGTACCAAGTACAGGCTACTA-TGCGTACCCGACAACTTCAATC-ACG
1 TGTGTAGTACTAAGTGCAGGCTACTACT-TGTACCAGA-TAGTT-AGTCGA-A
* * *
76459588 TGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTATGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTA-GTCGAA
* * *
76459638 TGTGTAGTACTAAGTGCAGGCTACTA--TGCATACCCGAGA-ACTTCAATC-ACG
1 TGTGTAGTACTAAGTGCAGGCTACTACTTG--TA-CC-AGATAGTT-AGTCGA-A
* * * * * *
76459689 TGTGTAGTACTAAGTGTAGGCTACTACGTGCACC-GATTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGTCGAA
* *
76459737 TGTCTAGTACTAAGTGCAGGTTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
76459763 TGCATACCAG
Statistics
Matches: 171, Mismatches: 38, Indels: 36
0.70 0.16 0.15
Matches are distributed among these distances:
48 29 0.17
49 4 0.02
50 64 0.37
51 67 0.39
52 5 0.03
53 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACTTGTACCAGATAGTTAGTCGAA
Found at i:76459612 original size:51 final size:50
Alignment explanation
Indices: 76459539--76459714 Score: 192
Period size: 51 Copynumber: 3.5 Consensus size: 50
76459529 AGGTCGAATA
* *
76459539 TGTAGTACCAAGTACAGGCTACTATGCGTACCCGACAACTTCAATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTTCAATCACGTG
* *** * * * * * *
76459590 TGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTT-ATGTCGCATG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTTCA-ATCACGTG
*
76459640 TGTAGTACTAAGTGCAGGCTACTATGCATACCCGAGAACTTCAATCACGTG
1 TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGA-AACTTCAATCACGTG
*
76459691 TGTAGTACTAAGTGTAGGCTACTA
1 TGTAGTACTAAGTGCAGGCTACTA
76459715 CGTGCACCGA
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
49 1 0.01
50 37 0.38
51 59 0.60
52 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (50 bp):
TGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAACTTCAATCACGTG
Found at i:76459613 original size:101 final size:101
Alignment explanation
Indices: 76459482--76459770 Score: 413
Period size: 101 Copynumber: 2.9 Consensus size: 101
76459472 TGGTTTTAGG
* * *
76459482 TCACGTGTGTAGTACTAAGTGCA-AGCTACTACTTGTACCAGATAGTTAGGTCGAATATGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGA-CTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTA
* * *
76459546 CCAAGTACAGGCTACTATGCGTACCCGACAACTTCAA
65 CTAAGTGCAGGCTACTATGCATACCCGACAACTTCAA
*
76459583 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTATGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTAC
*
76459648 TAAGTGCAGGCTACTATGCATACCCGAGAACTTCAA
66 TAAGTGCAGGCTACTATGCATACCCGACAACTTCAA
* * * * * *
76459684 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGCACC-GATTGTT-GGTCGCATGTCTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTAC
*
76459747 TAAGTGCAGGTTACTATGCATACC
66 TAAGTGCAGGCTACTATGCATACC
76459771 AGATAGCGTC
Statistics
Matches: 171, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
99 38 0.22
100 6 0.04
101 126 0.74
102 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATAGTTAGGTCGCATGTGTAGTAC
TAAGTGCAGGCTACTATGCATACCCGACAACTTCAA
Found at i:76463631 original size:15 final size:15
Alignment explanation
Indices: 76463575--76463639 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
76463565 TAAAGATAAC
*
76463575 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
76463589 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
*
76463604 GAA-AAACCCAGAATA
1 -AAGAAATCCAGAATA
76463619 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
76463634 AAGAAA
1 AAGAAA
76463640 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.26
15 29 0.67
16 3 0.07
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:76463641 original size:30 final size:31
Alignment explanation
Indices: 76463575--76463643 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
76463565 TAAAGATAAC
*
76463575 AAGAAAACC-GAATAAAGAAATCCAAGATAG
1 AAGAAACCCAGAATAAAGAAATCCAAGATAG
76463605 AA-AAACCCAGAATAAAGAAATCC-AGAATA-
1 AAGAAACCCAGAATAAAGAAATCCAAG-ATAG
76463634 AAGAAACCCA
1 AAGAAACCCA
76463644 AGATACGATA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 9 0.26
30 26 0.74
ACGTcount: A:0.61, C:0.17, G:0.13, T:0.09
Consensus pattern (31 bp):
AAGAAACCCAGAATAAAGAAATCCAAGATAG
Found at i:76467279 original size:13 final size:13
Alignment explanation
Indices: 76467261--76467287 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
76467251 GAAGTAATAG
76467261 CACATGAGCGTGT
1 CACATGAGCGTGT
76467274 CACATGAGCGTGT
1 CACATGAGCGTGT
76467287 C
1 C
76467288 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.22
Consensus pattern (13 bp):
CACATGAGCGTGT
Found at i:76469430 original size:13 final size:11
Alignment explanation
Indices: 76469404--76469441 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 11
76469394 TATACAAGTT
76469404 AAAAAAAT-AA
1 AAAAAAATAAA
*
76469414 AAAAAATTCAAA
1 AAAAAAAT-AAA
76469426 AAAAAAATAAA
1 AAAAAAATAAA
76469437 AAAAA
1 AAAAA
76469442 GTGATTTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 7 0.29
11 8 0.33
12 9 0.38
ACGTcount: A:0.87, C:0.03, G:0.00, T:0.11
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:76483517 original size:16 final size:15
Alignment explanation
Indices: 76483496--76483526 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
76483486 GGAATGGAGT
76483496 AAGTGAAATTATGTAA
1 AAGTGAAATT-TGTAA
76483512 AAGTGAAATTTGTAA
1 AAGTGAAATTTGTAA
76483527 TAAAACAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (15 bp):
AAGTGAAATTTGTAA
Found at i:76487408 original size:25 final size:25
Alignment explanation
Indices: 76487380--76487449 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
76487370 CTCTTTTAAT
*
76487380 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
76487405 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
76487430 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
76487450 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:76487508 original size:10 final size:10
Alignment explanation
Indices: 76487495--76487533 Score: 60
Period size: 10 Copynumber: 3.8 Consensus size: 10
76487485 ATATATGAAT
*
76487495 ATATAATGGC
1 ATATCATGGC
76487505 ATATCATGTGC
1 ATATCATG-GC
76487516 ATATCATGGC
1 ATATCATGGC
76487526 ATATCATG
1 ATATCATG
76487534 TATAAAATAG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (10 bp):
ATATCATGGC
Found at i:76487524 original size:21 final size:21
Alignment explanation
Indices: 76487495--76487534 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
76487485 ATATATGAAT
76487495 ATATAATGGCATATCATGTGC
1 ATATAATGGCATATCATGTGC
*
76487516 ATATCATGGCATATCATGT
1 ATATAATGGCATATCATGT
76487535 ATAAAATAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (21 bp):
ATATAATGGCATATCATGTGC
Found at i:76487601 original size:25 final size:25
Alignment explanation
Indices: 76487573--76487620 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
76487563 ATAACATATC
* * *
76487573 CCTAGGGGTATAATGGTTATTTTTA
1 CCTAGGGGCAAAATGGTCATTTTTA
76487598 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGGGCAAAATGGTCATTTT
76487621 CACGTTATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (25 bp):
CCTAGGGGCAAAATGGTCATTTTTA
Found at i:76489248 original size:30 final size:31
Alignment explanation
Indices: 76489203--76489309 Score: 105
Period size: 30 Copynumber: 3.6 Consensus size: 31
76489193 CATCTTGTTT
* *
76489203 GAGCTAAACC-GAGCTC-ACTTTCAACTCAC
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
* *
76489232 GAGCTAAACCTTAGCTCAAC-TTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
* * * *
76489262 GAGTTTAGCCTCAGCTCAACTTT-AGCTCAC
1 GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
*
76489292 GAGCTAAAGCTTAGCTCA
1 GAGCTAAACCTTAGCTCA
76489310 TTTTAGTTTA
Statistics
Matches: 60, Mismatches: 15, Indels: 5
0.75 0.19 0.06
Matches are distributed among these distances:
29 10 0.17
30 46 0.77
31 4 0.07
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (31 bp):
GAGCTAAACCTTAGCTCAACTTTCAGCTCAC
Found at i:76493524 original size:24 final size:24
Alignment explanation
Indices: 76493492--76493566 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
76493482 GGGCTAAACA
76493492 GGAGACTCATAAGAGTTTTAATCAG
1 GGAG-CTCATAAGAGTTTTAATCAG
*
76493517 GGAGCTCAT-AGAG-CTTAA-CAG
1 GGAGCTCATAAGAGTTTTAATCAG
* *
76493538 GTAACTCCA-AAGAGTTATT-ATCAG
1 GGAGCT-CATAAGAGTT-TTAATCAG
76493562 GGAGC
1 GGAGC
76493567 ACCAGATAGC
Statistics
Matches: 39, Mismatches: 6, Indels: 11
0.70 0.11 0.20
Matches are distributed among these distances:
21 7 0.18
22 10 0.26
23 5 0.13
24 13 0.33
25 4 0.10
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (24 bp):
GGAGCTCATAAGAGTTTTAATCAG
Found at i:76502735 original size:27 final size:27
Alignment explanation
Indices: 76502687--76502740 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
76502677 AAATCGTAGC
* *
76502687 TTCGAAAAAAAAAGTTAAAAAAAAAGT
1 TTCGAAAAAAAAAATCAAAAAAAAAGT
76502714 TTCGAAAAAAAAAATCCGAAAAAAAAA
1 TTCGAAAAAAAAAAT-C-AAAAAAAAA
76502741 AGAAGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 14 0.61
29 9 0.39
ACGTcount: A:0.69, C:0.07, G:0.09, T:0.15
Consensus pattern (27 bp):
TTCGAAAAAAAAAATCAAAAAAAAAGT
Found at i:76502764 original size:14 final size:14
Alignment explanation
Indices: 76502747--76502774 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
76502737 AAAAAGAAGG
76502747 AAAAAAAAATTGCA
1 AAAAAAAAATTGCA
76502761 AAAAAAAAATTGCA
1 AAAAAAAAATTGCA
76502775 TACGGTCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (14 bp):
AAAAAAAAATTGCA
Found at i:76505063 original size:24 final size:25
Alignment explanation
Indices: 76505036--76505089 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 25
76505026 ATGAGTGATA
*
76505036 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
76505060 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
76505084 AAAAAA
1 AAAAAA
76505090 AGAATTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
23 13 0.52
24 7 0.28
25 5 0.20
ACGTcount: A:0.63, C:0.04, G:0.22, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:76520060 original size:20 final size:20
Alignment explanation
Indices: 76520037--76520090 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
76520027 AGTTTTTCCC
*
76520037 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
76520057 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
76520077 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
76520091 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:76520072 original size:30 final size:30
Alignment explanation
Indices: 76520037--76520110 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
76520027 AGTTTTTCCC
76520037 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
76520067 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
76520097 AGCTCGTTTGAGCT
1 AGCTCGTTTGAGCT
76520111 TGGTTTAAGT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 4 0.10
30 36 0.90
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:76520100 original size:20 final size:20
Alignment explanation
Indices: 76520037--76520101 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
76520027 AGTTTTTCCC
* * * *
76520037 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
76520057 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
76520076 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
76520097 AGCTC
1 AGCTC
76520102 GTTTGAGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:76521693 original size:9 final size:9
Alignment explanation
Indices: 76521679--76521703 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
76521669 TTCTTAGGAC
76521679 TTTCTTTAT
1 TTTCTTTAT
76521688 TTTCTTTAT
1 TTTCTTTAT
76521697 TTTCTTT
1 TTTCTTT
76521704 TGTGAAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTCTTTAT
Found at i:76534584 original size:27 final size:26
Alignment explanation
Indices: 76534546--76534656 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
76534536 TGGCACAGTC
*
76534546 ATTTTACCCTACAGTGGTATTTCGGTA
1 ATTTTACACTACAG-GGTATTTCGGTA
*
76534573 ATTTTACACTACAAGGTCATTTCGGTA
1 ATTTTACACTACAGGGT-ATTTCGGTA
*
76534600 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTAC-AGGGTATTTCGGTA
*
76534627 ATTTTACACCATA-AGGGTA-TTCGATA
1 ATTTTACA-C-TACAGGGTATTTCGGTA
76534653 ATTT
1 ATTT
76534657 ACAAACCAGG
Statistics
Matches: 74, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 12 0.16
27 55 0.74
28 5 0.07
29 2 0.03
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (26 bp):
ATTTTACACTACAGGGTATTTCGGTA
Found at i:76549272 original size:50 final size:50
Alignment explanation
Indices: 76549168--76549435 Score: 195
Period size: 50 Copynumber: 5.6 Consensus size: 50
76549158 TGCAGGTGCT
* ** * * *
76549168 GATGCCATGTCCCAGAAAT-GTCTTACACTGGCACT--CATCTCAATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
* *
76549215 GACGCCATGTTCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
* * * * * *
76549265 GATGCCATGTCCCAGACATAGTCTTACAC-TG-AC-A-CCTCTCGTA-GTT
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATC-TATGTC
*** * * *
76549311 GATG-CATGTCCCAGACAT-GTCTTACATTGGCT-TATGTC-T-T-GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTA-G-CATATCTATGTC
* *
76549357 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
* *
76549407 GATGCCATGTCCCAAACATGGTTTTACAC
1 GATGCCATGTCCCAGACATGGTCTTACAC
76549436 TGACACCTCT
Statistics
Matches: 173, Mismatches: 31, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
44 8 0.05
45 16 0.09
46 16 0.09
47 35 0.20
48 28 0.16
49 5 0.03
50 65 0.38
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTC
Found at i:76549434 original size:142 final size:140
Alignment explanation
Indices: 76549220--76549755 Score: 683
Period size: 138 Copynumber: 3.8 Consensus size: 140
76549210 ATGTCGACGC
* *
76549220 CATGTTCCAGACATGGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACATA
1 CATGTCCCAGACAT-GTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACATG
* * *
76549285 GTCTTACACTGACACCTCTCGTAGTTGATGCATGTCCCAGACATGTCTTACATTGGCTTATGTCT
65 GTCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTCT
76549350 TGAGGCCGATG
130 TGAGGCCGATG
* * *
76549361 CCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTGTGTCGATGCCATGTCCCAAACAT
1 -CATGTCCCAGACAT-GTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACAT
* *
76549426 GGTTTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTC
64 GGTCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTC
*
76549491 TTGAGGCCAATG
129 TTGAGGCCGATG
* ** * * * *
76549503 CATGTCCCGGACATGTCTTACATTAGCACT--CATCTCAATGCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACATGG
* *
76549566 TCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGATATGTCTTACATTGGCTTACGTCTC
66 TCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTCTT
76549631 GAGGCCGATG
131 GAGGCCGATG
* * * * * * *
76549641 CATGTCCCAGACATGTCTTACACTAGCACT--CGTCTCAATGCCGATGCCATATCCCA-ACATGG
1 CATGTCCCAGACATGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACATGG
* *
76549703 TCTTACACTG---GCTCTCATAATGTGGCCGATGGATGTCCCAGACATGTCTTACA
66 TCTTACACTGACACCTCTCAT-A-GT---CGATGCATGTCCCAGACATGTCTTACA
76549756 ATAGCTCACA
Statistics
Matches: 356, Mismatches: 33, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
134 7 0.02
135 1 0.00
136 2 0.01
137 16 0.04
138 149 0.42
139 25 0.07
140 13 0.04
141 13 0.04
142 130 0.37
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (140 bp):
CATGTCCCAGACATGTCTTACACAAGCTCTAGCATATCTATGTCGATGCCATGTCCCAGACATGG
TCTTACACTGACACCTCTCATAGTCGATGCATGTCCCAGACATGTCTTACATTGGCTTACGTCTT
GAGGCCGATG
Found at i:76549510 original size:46 final size:46
Alignment explanation
Indices: 76549264--76549755 Score: 287
Period size: 46 Copynumber: 10.6 Consensus size: 46
76549254 ATATCTATGT
* * * *
76549264 CGATGCCATGTCCCAGACATAGTCTTACACTGAC--ACCTCTCGTA-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTTG-AGGC
* * *
76549310 TGATGCATGTCCCAGACATGTCTTACATTGGCTTATGTCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGC
** * * * *
76549356 CGATGCCATGTCCCAGACATGGTCTTACACAAGCTCTAGCATATTTG-TGT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TA-CGT-CTTGAGGC
* * * * *
76549406 CGATGCCATGTCCCAAACATGGTTTTACACTGAC--ACCTCTCAT-A-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCT--TGAGGC
76549452 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGC
* * * * * * ** *
76549498 CAATGCATGTCCCGGACATGTCTTACATTAGCACT-CATCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTTGAGGC
* * *
76549544 CGATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCTCAT-A-GT
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCT--TGAGGC
* * *
76549590 CGATGCATGTCCCAGATATGTCTTACATTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGC
* * ** *
76549636 CGATGCATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTGGC-TTACGTCTTGAGGC
* * ** *
76549682 CGATGCCATATCCCA-ACATGGTCTTACACTGGCTCT-CATAATGTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCTTGAGGC
*
76549729 CGATGGATGTCCCAGACATGTCTTACA
1 CGATGCATGTCCCAGACATGTCTTACA
76549756 ATAGCTCACA
Statistics
Matches: 347, Mismatches: 69, Indels: 60
0.73 0.14 0.13
Matches are distributed among these distances:
44 34 0.10
45 44 0.13
46 146 0.42
47 66 0.19
48 21 0.06
49 2 0.01
50 31 0.09
51 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTTGAGGC
Found at i:76551091 original size:13 final size:14
Alignment explanation
Indices: 76551065--76551093 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
76551055 ACTAACGACG
76551065 AATTAAACCATTAT
1 AATTAAACCATTAT
76551079 AATTAAA-CATTAT
1 AATTAAACCATTAT
76551092 AA
1 AA
76551094 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:76552856 original size:27 final size:27
Alignment explanation
Indices: 76552819--76552910 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
76552809 TTCCTAAAAG
* * *
76552819 TACCCTCGATTTATAGAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
76552846 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
*
76552873 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTGTTT
76552900 TACCCTCGATT
1 TACCCTCGATT
76552911 GTGAAATTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTGTTT
Found at i:76552932 original size:27 final size:26
Alignment explanation
Indices: 76552902--76553044 Score: 119
Period size: 27 Copynumber: 5.3 Consensus size: 26
76552892 TACCGTTTTA
**
76552902 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
76552929 CCCT-ATAGGGTAGAATTACCAAAATAC
1 CCCTGATTGTG-A-AATTACCAAAATAC
* *
76552956 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
76552983 CACTGGTTTGTGAAATTACCAAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
* *
76553009 CCCTCAATTTGTAAAATTACCAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
76553037 CCCTGATT
1 CCCTGATT
76553045 TACAAAATTA
Statistics
Matches: 93, Mismatches: 17, Indels: 13
0.76 0.14 0.11
Matches are distributed among these distances:
25 4 0.04
26 6 0.06
27 76 0.82
28 5 0.05
29 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:76552983 original size:54 final size:54
Alignment explanation
Indices: 76552900--76553043 Score: 152
Period size: 54 Copynumber: 2.7 Consensus size: 54
76552890 ATTACCGTTT
* * **
76552900 TACCCTCGA-TTGTGAAATTACTGAAATACCCCT-ATAGGGT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT-GGGTGA-AATTACCAAAA
* * * **
76552953 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCAAAA
1 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATGGGTGAAATTACCAAAA
76553007 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTGAT
76553044 TTACAAAATT
Statistics
Matches: 74, Mismatches: 12, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
52 1 0.01
53 5 0.07
54 65 0.88
55 3 0.04
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.28
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTGATGGGTGAAATTACCAAAA
Found at i:76553045 original size:27 final size:27
Alignment explanation
Indices: 76552942--76553065 Score: 146
Period size: 27 Copynumber: 4.6 Consensus size: 27
76552932 TATAGGGTAG
76552942 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
76552969 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
*
76552996 AATTACCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
**
76553023 AATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
76553050 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
76553066 TTAACTTTCT
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
26 5 0.06
27 74 0.89
28 4 0.05
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:76553053 original size:54 final size:54
Alignment explanation
Indices: 76552942--76553122 Score: 188
Period size: 54 Copynumber: 3.3 Consensus size: 54
76552932 TATAGGGTAG
* ***
76552942 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCACTGGTTTACAA
* *
76552996 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * * *
76553050 AATTA-CAGAAATACCCTTAACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAA
1 AATTACCA-AAATACCCTCAA-TTTGT-AAAATTACCA-AAATACCACTGGTTTACAA
**
76553106 AATTACTGAAATACCCT
1 AATTACCAAAATACCCT
76553123 TGGTTTGTAG
Statistics
Matches: 107, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
53 2 0.02
54 62 0.58
55 6 0.06
56 37 0.35
ACGTcount: A:0.43, C:0.20, G:0.07, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCACTGGTTTACAA
Found at i:76553116 original size:27 final size:27
Alignment explanation
Indices: 76553077--76553128 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
76553067 TAACTTTCTA
76553077 AAAATTATAGAAATACCATTGGTTTAC
1 AAAATTATAGAAATACCATTGGTTTAC
*
76553104 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCATTGGTTT
76553129 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTAC
Found at i:76553238 original size:27 final size:26
Alignment explanation
Indices: 76553173--76553245 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 26
76553163 GACTAAAATT
*
76553173 CCCCTA-ATAGGTAAAAAGACCGTAAA
1 CCCCTATAT-GGTAAAATGACCGTAAA
* * * *
76553199 GCCCTTTAGGGTAAAGTGACCGTAATA
1 CCCCTATATGGTAAAATGACCGTAA-A
76553226 CCCCTATATGGTAAAATGAC
1 CCCCTATATGGTAAAATGAC
76553246 GAATATGCCC
Statistics
Matches: 36, Mismatches: 9, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
26 18 0.50
27 18 0.50
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.22
Consensus pattern (26 bp):
CCCCTATATGGTAAAATGACCGTAAA
Found at i:76554130 original size:24 final size:25
Alignment explanation
Indices: 76554054--76554123 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
76554044 AGGAAGTGCT
* * * *
76554054 AAAAGGGCTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
76554079 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
76554104 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
76554124 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:76554136 original size:24 final size:24
Alignment explanation
Indices: 76554079--76554150 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
76554069 TAGTTTACCG
76554079 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
76554103 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
76554127 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
76554151 ATGATAAAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:76554392 original size:31 final size:31
Alignment explanation
Indices: 76554343--76554425 Score: 152
Period size: 31 Copynumber: 2.7 Consensus size: 31
76554333 CGCTTACAGT
76554343 AAAGGCTTCGG-CCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76554373 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
76554404 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
76554426 TCGAGACTGA
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
30 16 0.31
31 36 0.69
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:76558834 original size:27 final size:27
Alignment explanation
Indices: 76558804--76558981 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
76558794 ATATTGAGTC
* *
76558804 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
76558831 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
76558858 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
76558886 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
76558913 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
76558940 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
76558967 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76558982 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:76558943 original size:82 final size:81
Alignment explanation
Indices: 76558825--76558980 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76558815 TGCTATATAA
* *
76558825 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76558890 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
76558907 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76558971 CACTTAGTGC
65 CACTTAGTGC
76558981 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 17 0.26
82 49 0.74
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76558970 original size:54 final size:53
Alignment explanation
Indices: 76558804--76558980 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 53
76558794 ATATTGAGTC
* * *
76558804 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCCACATAGTC-AAT
* * *
76558858 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCCACATAGTCAA-T
* ** *
76558913 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCCACATAGTC-AAT
76558967 CGCACACTTAGTGC
1 CGCACACTTAGTGC
76558981 TGTACAATTT
Statistics
Matches: 105, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
52 1 0.01
54 57 0.54
55 46 0.44
56 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (53 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAT
Found at i:76566719 original size:27 final size:27
Alignment explanation
Indices: 76566689--76566866 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
76566679 ATATTGAGTC
* *
76566689 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
76566716 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
76566743 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
76566771 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
76566798 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
76566825 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
76566852 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76566867 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:76566828 original size:82 final size:81
Alignment explanation
Indices: 76566710--76566865 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
76566700 TGCTATATAA
* *
76566710 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
76566775 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
76566792 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
76566856 CACTTAGTGC
65 CACTTAGTGC
76566866 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:76568923 original size:12 final size:12
Alignment explanation
Indices: 76568908--76568933 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76568898 ATCATCCTCT
76568908 TCATCAGATTCA
1 TCATCAGATTCA
76568920 TCATCAGATTCA
1 TCATCAGATTCA
76568932 TC
1 TC
76568934 CCTCAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:76570736 original size:9 final size:9
Alignment explanation
Indices: 76570722--76570803 Score: 85
Period size: 9 Copynumber: 9.1 Consensus size: 9
76570712 TATGTATTAC
*
76570722 GTAAGTTAA
1 GTAAGTTAT
76570731 GTAAGTTAT
1 GTAAGTTAT
76570740 GTAAGTTAT
1 GTAAGTTAT
76570749 GTAAGTTAT
1 GTAAGTTAT
* *
76570758 GATATGATAT
1 G-TAAGTTAT
* *
76570768 -AAATTTAT
1 GTAAGTTAT
*
76570776 GTAAGGTAT
1 GTAAGTTAT
76570785 GTAAGTTAT
1 GTAAGTTAT
*
76570794 GTAAATTAT
1 GTAAGTTAT
76570803 G
1 G
76570804 ATATGAAATA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
8 4 0.07
9 49 0.83
10 6 0.10
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:76570786 original size:45 final size:45
Alignment explanation
Indices: 76570731--76570823 Score: 150
Period size: 45 Copynumber: 2.1 Consensus size: 45
76570721 CGTAAGTTAA
* * *
76570731 GTAAGTTATGTAAGTTATGTAAGTTATGATATGATATAAATTTAT
1 GTAAGGTATGTAAGTTATGTAAATTATGATATGAAATAAATTTAT
*
76570776 GTAAGGTATGTAAGTTATGTAAATTATGATATGAAATATATTTAT
1 GTAAGGTATGTAAGTTATGTAAATTATGATATGAAATAAATTTAT
76570821 GTA
1 GTA
76570824 TTACGTAAAG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (45 bp):
GTAAGGTATGTAAGTTATGTAAATTATGATATGAAATAAATTTAT
Found at i:76571383 original size:17 final size:17
Alignment explanation
Indices: 76571345--76571384 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
76571335 CAAATTGAGC
* *
76571345 AAAAATGATTTTGTATA
1 AAAAATGATTTTGAAAA
*
76571362 GAAAATGATTTTGAAAA
1 AAAAATGATTTTGAAAA
76571379 AAAAAT
1 AAAAAT
76571385 ATGGCAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (17 bp):
AAAAATGATTTTGAAAA
Found at i:76571897 original size:20 final size:20
Alignment explanation
Indices: 76571872--76571912 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
76571862 GATGGTAGAG
76571872 TCGATTCCAGCAAATTAAAT
1 TCGATTCCAGCAAATTAAAT
* *
76571892 TCGATTCTAGCAACTTAAAT
1 TCGATTCCAGCAAATTAAAT
76571912 T
1 T
76571913 ACACCTGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (20 bp):
TCGATTCCAGCAAATTAAAT
Found at i:76572217 original size:35 final size:35
Alignment explanation
Indices: 76572177--76572282 Score: 120
Period size: 35 Copynumber: 3.3 Consensus size: 35
76572167 AATTTATAGG
*
76572177 CTAAAATGAAAATTCAAAAACCCTTTGAAATTAGA
1 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
* * *
76572212 CTAAAATGGAACTT-GAAAA---TTT---A-TAGG
1 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
76572239 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
1 CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
76572274 CTAAAATGG
1 CTAAAATGG
76572283 GTTTACTACA
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
27 16 0.29
28 5 0.09
31 6 0.11
34 5 0.09
35 24 0.43
ACGTcount: A:0.48, C:0.12, G:0.13, T:0.26
Consensus pattern (35 bp):
CTAAAATGGAAATTCAAAAACCCTTTGAAATTAGA
Found at i:76572227 original size:62 final size:62
Alignment explanation
Indices: 76572159--76572282 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
76572149 TACAGTAATA
76572159 AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
1 AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
*
76572221 AACTTGAAAATTTATAGGCTAAAATGGAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
1 AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
76572283 GTTTACTACA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.48, C:0.11, G:0.14, T:0.27
Consensus pattern (62 bp):
AACTTGAAAATTTATAGGCTAAAATGAAAATTCAAAAACCCTTTGAAATTAGACTAAAATGG
Found at i:76578409 original size:28 final size:28
Alignment explanation
Indices: 76578344--76578492 Score: 192
Period size: 28 Copynumber: 5.3 Consensus size: 28
76578334 GAGATTGGCG
* * * *
76578344 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
76578373 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* * *
76578401 CTAAGTGTGCGAGCTTGATTATGTAACA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
76578429 CTAAGTGTGCGAGTTTGATTATATAGTA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
76578457 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
76578484 CTGAGTGTG
1 CTAAGTGTG
76578493 AGGACTTAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
27 21 0.20
28 71 0.66
29 15 0.14
ACGTcount: A:0.27, C:0.11, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:76586388 original size:28 final size:28
Alignment explanation
Indices: 76586323--76586473 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
76586313 GAGATTGGCG
* * * *
76586323 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
76586352 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
76586380 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
76586408 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
76586436 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
76586463 CTGAGTGTGCG
1 CTAAGTGTGCG
76586474 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:76588861 original size:7 final size:7
Alignment explanation
Indices: 76588851--76588969 Score: 55
Period size: 7 Copynumber: 17.0 Consensus size: 7
76588841 GATACTCAAT
76588851 ACCCTAA
1 ACCCTAA
*
76588858 ACCCTAT
1 ACCCTAA
**
76588865 AGACTAA
1 ACCCTAA
76588872 ACCCTAA
1 ACCCTAA
* *
76588879 ACCCGAT
1 ACCCTAA
*
76588886 A-CCGAA
1 ACCCTAA
*
76588892 TACCTTAA
1 -ACCCTAA
76588900 ACCCTATA
1 ACCCTA-A
*
76588908 A-ACTAA
1 ACCCTAA
*
76588914 ACCATAA
1 ACCCTAA
*
76588921 ACCCAAA
1 ACCCTAA
76588928 TACCCTAA
1 -ACCCTAA
*
76588936 ACCTTAA
1 ACCCTAA
76588943 A-CCTAA
1 ACCCTAA
***
76588949 ATTTTAA
1 ACCCTAA
*
76588956 ACCTTAA
1 ACCCTAA
76588963 ACCCTAA
1 ACCCTAA
76588970 TTCCATGTAC
Statistics
Matches: 81, Mismatches: 25, Indels: 12
0.69 0.21 0.10
Matches are distributed among these distances:
6 11 0.14
7 59 0.73
8 11 0.14
ACGTcount: A:0.45, C:0.32, G:0.03, T:0.21
Consensus pattern (7 bp):
ACCCTAA
Found at i:76588875 original size:21 final size:20
Alignment explanation
Indices: 76588851--76588924 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 20
76588841 GATACTCAAT
76588851 ACCCTAAACCCTATAGACTAA
1 ACCCTAAACCCTATA-ACTAA
* * *
76588872 ACCCTAAACCCGATACCGAA
1 ACCCTAAACCCTATAACTAA
*
76588892 TACCTTAAACCCTATAAACTAA
1 -ACCCTAAACCCTAT-AACTAA
*
76588914 ACCATAAACCC
1 ACCCTAAACCC
76588925 AAATACCCTA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.07
21 36 0.84
22 4 0.09
ACGTcount: A:0.43, C:0.35, G:0.04, T:0.18
Consensus pattern (20 bp):
ACCCTAAACCCTATAACTAA
Found at i:76588894 original size:42 final size:42
Alignment explanation
Indices: 76588834--76588924 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 42
76588824 ATTTAATTTG
* * *
76588834 TAAACTCGATACTCAATACCCTAAACCCTATAGACTAAACCC
1 TAAACCCGATACTCAATACCCTAAACCCTATAAACTAAACCA
*
76588876 TAAACCCGATAC-CGAATACCTTAAACCCTATAAACTAAACCA
1 TAAACCCGATACTC-AATACCCTAAACCCTATAAACTAAACCA
76588918 TAAACCC
1 TAAACCC
76588925 AAATACCCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
41 1 0.02
42 43 0.98
ACGTcount: A:0.43, C:0.33, G:0.04, T:0.20
Consensus pattern (42 bp):
TAAACCCGATACTCAATACCCTAAACCCTATAAACTAAACCA
Found at i:76593066 original size:39 final size:39
Alignment explanation
Indices: 76593020--76593123 Score: 120
Period size: 39 Copynumber: 2.6 Consensus size: 39
76593010 GTTTGTTAAA
*
76593020 AAAATGCCACTATTGCTTAGTTTTTAGCGGCGTTAAGAC
1 AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTTAAGAC
* * **
76593059 AAAATGCCGCTATTTCTCAGTTTTTAGCGGCGTTTGGAC
1 AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTTAAGAC
* *
76593098 AAAAAATGCCGCTA-TGCTCAATTTTT
1 --AAAATGCCACTATTGCTCAGTTTTT
76593124 TGCAGCTTTG
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
39 34 0.61
40 10 0.18
41 12 0.21
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (39 bp):
AAAATGCCACTATTGCTCAGTTTTTAGCGGCGTTAAGAC
Found at i:76593124 original size:41 final size:42
Alignment explanation
Indices: 76592951--76593124 Score: 132
Period size: 41 Copynumber: 4.3 Consensus size: 42
76592941 TGAAAATGGC
* * *
76592951 TGCTCAACTTTTTA-TGGCGTTTGGATAAAAAATGGCGCTAT
1 TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
* * * * *
76592992 AGAT-AAGCTTTTT-GCGGAGTTTGTTA-AAAAAATGCCACTAT
1 TGCTCAA-CTTTTTAGCGGCGTTTG-GACAAAAAATGCCGCTAT
* * **
76593033 TGCT-TAGTTTTTAGCGGCGTTAAGAC--AAAATGCCGCTAT
1 TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
* *
76593072 TTCTC-AGTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTA-
1 TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
*
76593112 TGCTCAATTTTTT
1 TGCTCAACTTTTT
76593125 GCAGCTTTGT
Statistics
Matches: 103, Mismatches: 21, Indels: 18
0.73 0.15 0.13
Matches are distributed among these distances:
39 34 0.33
40 12 0.12
41 56 0.54
42 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (42 bp):
TGCTCAACTTTTTAGCGGCGTTTGGACAAAAAATGCCGCTAT
Found at i:76606886 original size:30 final size:30
Alignment explanation
Indices: 76606852--76606912 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76606842 TCCTTAACTC
76606852 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76606882 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76606912 A
1 A
76606913 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76614229 original size:27 final size:27
Alignment explanation
Indices: 76614191--76614352 Score: 152
Period size: 27 Copynumber: 6.0 Consensus size: 27
76614181 GTCGTTAAGA
*
76614191 CCTCGGTTTGTAAAATTACTGAAATAC
1 CCTCAGTTTGTAAAATTACTGAAATAC
76614218 CCTCAGTTTGTAAAATTA-TCGAAATAC
1 CCTCAGTTTGTAAAATTACT-GAAATAC
* * **
76614245 CCTCAATTTATAAAATTACCAAAATAC
1 CCTCAGTTTGTAAAATTACTGAAATAC
* *
76614272 CC-CTGGTTTGTAAAGTTACTGAAATATC
1 CCTC-AGTTTGTAAAATTACTGAAATA-C
* * *
76614300 CC-CGGGTTGTAAAATTACTAAAATAC
1 CCTCAGTTTGTAAAATTACTGAAATAC
* *
76614326 CCCCAATTTGTAAAATTA-TCGAAATAC
1 CCTCAGTTTGTAAAATTACT-GAAATAC
76614353 TTCTGTAGGG
Statistics
Matches: 111, Mismatches: 18, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
26 6 0.05
27 101 0.91
28 4 0.04
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (27 bp):
CCTCAGTTTGTAAAATTACTGAAATAC
Found at i:76614333 original size:81 final size:81
Alignment explanation
Indices: 76614195--76614352 Score: 212
Period size: 81 Copynumber: 2.0 Consensus size: 81
76614185 TTAAGACCTC
* * *
76614195 GGTTTGTAAAATTACTGAAATACCCTCAGTTTGTAAAATTATCGAAATACCCTCAATTTATAAAA
1 GGTTTGTAAAATTACTGAAATACCCTCAGGTTGTAAAATTATCAAAATACCCCCAATTTATAAAA
76614260 TTACCAAAATACCCCT
66 TTACCAAAATACCCCT
* * *
76614276 GGTTTGTAAAGTTACTGAAATATCCC-CGGGTTGTAAAATTA-CTAAAATACCCCCAATTTGTAA
1 GGTTTGTAAAATTACTGAAATA-CCCTCAGGTTGTAAAATTATC-AAAATACCCCCAATTTATAA
* *
76614339 AATTATCGAAATAC
64 AATTACCAAAATAC
76614353 TTCTGTAGGG
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
80 1 0.01
81 63 0.94
82 3 0.04
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (81 bp):
GGTTTGTAAAATTACTGAAATACCCTCAGGTTGTAAAATTATCAAAATACCCCCAATTTATAAAA
TTACCAAAATACCCCT
Found at i:76615801 original size:17 final size:18
Alignment explanation
Indices: 76615771--76615811 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
76615761 TTTTACTCAA
76615771 GTTTTCAAATAAAA-AGG
1 GTTTTCAAATAAAACAGG
*
76615788 GTTTTC-AATGAAAACATG
1 GTTTTCAAAT-AAAACAGG
76615806 GTTTTC
1 GTTTTC
76615812 GAAAAACACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 10 0.48
18 8 0.38
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (18 bp):
GTTTTCAAATAAAACAGG
Found at i:76620489 original size:18 final size:17
Alignment explanation
Indices: 76620466--76620502 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
76620456 CAGCTTTGAA
76620466 TGAATTATAAATAATAGT
1 TGAATTATAAATAAT-GT
*
76620484 TGAATTATAGATAATGT
1 TGAATTATAAATAATGT
76620501 TG
1 TG
76620503 CATATGAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.43, C:0.00, G:0.16, T:0.41
Consensus pattern (17 bp):
TGAATTATAAATAATGT
Found at i:76637065 original size:38 final size:39
Alignment explanation
Indices: 76636977--76637128 Score: 194
Period size: 39 Copynumber: 4.0 Consensus size: 39
76636967 TTCGGGTTAG
*
76636977 CGGAT-TAGTACT-TCA-AAATGCCTTCGGGACTTAGCC
1 CGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCC
76637013 CGGATATAGTACTCGCACAAATG-CTTC-GGACTTAGCC
1 CGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCC
76637050 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTT-GCC
1 CGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCC
* *
76637089 CGGA-ACTAGTCACTAGCGCAAATG-CTTCGGGACTTAGCC
1 CGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCC
76637128 C
1 C
76637129 AGGTATCATC
Statistics
Matches: 104, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
36 5 0.05
37 27 0.26
38 31 0.30
39 35 0.34
40 6 0.06
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:76641602 original size:21 final size:21
Alignment explanation
Indices: 76641569--76641608 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
76641559 TCTTCCTTGA
*
76641569 TGTTACGAGATGGGGTTACGG
1 TGTTACGACATGGGGTTACGG
*
76641590 TGTTGCGACATGGGGTTAC
1 TGTTACGACATGGGGTTAC
76641609 AATTTTCACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.12, G:0.40, T:0.30
Consensus pattern (21 bp):
TGTTACGACATGGGGTTACGG
Found at i:76644233 original size:29 final size:29
Alignment explanation
Indices: 76644198--76644297 Score: 94
Period size: 29 Copynumber: 3.4 Consensus size: 29
76644188 TCATCGACCA
*
76644198 ATGAAAAGGGATAGCTTCGGCTATCGATT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
* * * * * *
76644227 ATGAAAAAGGGAT-GGTGACGACCATTAAAT
1 ATG-AAAAGGGATAGCT-TCGGCTATTGATT
* *
76644257 ACGAAAAGGGATAGCTTCGGCTGTTGATT
1 ATGAAAAGGGATAGCTTCGGCTATTGATT
76644286 ATGAAAAGGGAT
1 ATGAAAAGGGAT
76644298 GGTGATGACC
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
29 32 0.62
30 20 0.38
ACGTcount: A:0.36, C:0.11, G:0.29, T:0.24
Consensus pattern (29 bp):
ATGAAAAGGGATAGCTTCGGCTATTGATT
Found at i:76644317 original size:29 final size:29
Alignment explanation
Indices: 76644285--76644340 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
76644275 GGCTGTTGAT
*
76644285 TATGAAAAGGGATGGTGATGACCATCAAC
1 TATGAAAAGGGATGGTGACGACCATCAAC
*
76644314 TATGAAAAGGGATTGTGACGACCATCA
1 TATGAAAAGGGATGGTGACGACCATCA
76644341 TTATTCCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.38, C:0.14, G:0.27, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGACGACCATCAAC
Found at i:76644321 original size:58 final size:59
Alignment explanation
Indices: 76644198--76644326 Score: 197
Period size: 58 Copynumber: 2.2 Consensus size: 59
76644188 TCATCGACCA
*
76644198 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGGATGGTGACGACCATTAAAT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGGATGGTGACGACCATCAAAT
* * * * *
76644257 ACGAAAAGGGATAGCTTCGGCTGTTGATTATG-AAAAGGGATGGTGATGACCATCAACT
1 ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGGATGGTGACGACCATCAAAT
76644315 ATGAAAAGGGAT
1 ATGAAAAGGGAT
76644327 TGTGACGACC
Statistics
Matches: 63, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
58 34 0.54
59 29 0.46
ACGTcount: A:0.36, C:0.12, G:0.29, T:0.23
Consensus pattern (59 bp):
ATGAAAAGGGATAGCTTCGGCTATCGATTATGAAAAAGGGATGGTGACGACCATCAAAT
Found at i:76644571 original size:21 final size:20
Alignment explanation
Indices: 76644547--76644612 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 20
76644537 ATTTTTATTT
76644547 TAAGCTTATGCATTGTATTGG
1 TAAGC-TATGCATTGTATTGG
* *
76644568 TAAGC-AT-CGTT-TATGTGT
1 TAAGCTATGCATTGTAT-TGG
76644586 TACAGCATATGCATTGTATTGG
1 TA-AGC-TATGCATTGTATTGG
76644608 TAAGC
1 TAAGC
76644613 ATCGTTTATG
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 3 0.09
18 7 0.20
19 5 0.14
21 10 0.29
22 7 0.20
23 3 0.09
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (20 bp):
TAAGCTATGCATTGTATTGG
Found at i:76644597 original size:40 final size:40
Alignment explanation
Indices: 76644553--76644630 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
76644543 ATTTTAAGCT
76644553 TATGCATTGTATTGGTAAGCATCGTTTATGTGTTACAGCA
1 TATGCATTGTATTGGTAAGCATCGTTTATGTGTTACAGCA
76644593 TATGCATTGTATTGGTAAGCATCGTTTATGTGTTACAG
1 TATGCATTGTATTGGTAAGCATCGTTTATGTGTTACAG
76644631 ACTTACTAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.24, C:0.12, G:0.23, T:0.41
Consensus pattern (40 bp):
TATGCATTGTATTGGTAAGCATCGTTTATGTGTTACAGCA
Found at i:76646736 original size:40 final size:40
Alignment explanation
Indices: 76646484--76646729 Score: 413
Period size: 40 Copynumber: 6.2 Consensus size: 40
76646474 AACCCAAGTA
* * * *
76646484 CCTTCGGGATTTA-TCCGGATATAGCAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76646523 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76646563 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
76646603 CCTTCGGAACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
76646643 CCTTCTGGACTTAGACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76646683 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
76646723 CCTTCGG
1 CCTTCGG
76646730 ATCTTAGTCC
Statistics
Matches: 194, Mismatches: 12, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
39 12 0.06
40 182 0.94
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:76651002 original size:43 final size:43
Alignment explanation
Indices: 76650953--76651121 Score: 168
Period size: 43 Copynumber: 4.0 Consensus size: 43
76650943 TAGGGTTTCT
76650953 GATATGT-ATTCTCATGTAAGACCACGTCTGGGACATTGGCATC
1 GATATGTGATT-TCATGTAAGACCACGTCTGGGACATTGGCATC
* * * *
76650996 GATATGTGATTACGTGTAAGGA-CATGTCTGGGACATCGGCATC
1 GATATGTGATTTCATGTAA-GACCACGTCTGGGACATTGGCATC
* * * *
76651039 -ATATTTGA-TTCGTGTAAGACC-CTGTCTGGGATAGTGGCATC
1 GATATGTGATTTCATGTAAGACCAC-GTCTGGGACATTGGCATC
* ** *
76651080 GATATGAGATACCATGTAAGACCACGTCTGGGACGTTGGCAT
1 GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCAT
76651122 TGTACGATAT
Statistics
Matches: 101, Mismatches: 18, Indels: 14
0.76 0.14 0.11
Matches are distributed among these distances:
40 2 0.02
41 24 0.24
42 13 0.13
43 56 0.55
44 6 0.06
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (43 bp):
GATATGTGATTTCATGTAAGACCACGTCTGGGACATTGGCATC
Found at i:76666975 original size:55 final size:54
Alignment explanation
Indices: 76666869--76667123 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 54
76666859 ATTAGGGTTT
* *
76666869 AAGGATACCATGTAAGACCATGCCAAGGCATGGTTATTGGTAAGGTT-TATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-GTTCTATAAGGC
* * * *
76666924 AAGGATACCATGTAAAACTATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-CTATAAGGC
* * * * *
76666979 AAATG-TCCCGTGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * * * * *
76667032 AAGGATGCGATGTAAGACCATGTCGACACATGGCAATGGTAAGTT-T-CAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
* * * *
76667081 AAGGATACCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
76667124 GTACCCGTGT
Statistics
Matches: 162, Mismatches: 33, Indels: 16
0.77 0.16 0.08
Matches are distributed among these distances:
49 36 0.22
52 5 0.03
53 41 0.25
54 8 0.05
55 69 0.43
56 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCTATAAGGC
Found at i:76667075 original size:108 final size:110
Alignment explanation
Indices: 76666879--76667076 Score: 283
Period size: 108 Copynumber: 1.8 Consensus size: 110
76666869 AAGGATACCA
* * *
76666879 TGTAAGACCATGCCAAGGCATGGTTATTGGTAAGGTTTATAAGGCAAGGATACCATGTAAAACTA
1 TGTAAGACCATGCCAAGGCATGGTCATTGGTAAGGTTCATAAGGCAAGGATACCATGTAAAACCA
* *
76666944 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAATGTCCCG
66 TGTCAACACATGGCAATGATAAGTTACTATAAGGCAAATGTCCCG
* * * *
76666989 TGTAAGACCATGCCAAGGCATGG-CATTGGTGA-GTTCATAAGGCAAGGATGCGATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGTCATTGGTAAGGTTCATAAGGCAAGGATACCATGTAAAACCA
* *
76667052 TGTCGACACATGGCAATGGTAAGTT
66 TGTCAACACATGGCAATGATAAGTT
76667077 TCAAAAGGAT
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 47 0.61
109 7 0.09
110 23 0.30
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGTCATTGGTAAGGTTCATAAGGCAAGGATACCATGTAAAACCA
TGTCAACACATGGCAATGATAAGTTACTATAAGGCAAATGTCCCG
Found at i:76667325 original size:4 final size:4
Alignment explanation
Indices: 76667316--76667348 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
76667306 TAAATTTGGT
*
76667316 TAAG TAAG TAAG TAAT TAAG TAAG TAAG TAAG T
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG T
76667349 GAAGAAGTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.30
Consensus pattern (4 bp):
TAAG
Found at i:76667336 original size:16 final size:16
Alignment explanation
Indices: 76667315--76667346 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
76667305 ATAAATTTGG
76667315 TTAAGTAAGTAAGTAA
1 TTAAGTAAGTAAGTAA
76667331 TTAAGTAAGTAAGTAA
1 TTAAGTAAGTAAGTAA
76667347 GTGAAGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.19, T:0.31
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAA
Found at i:76681577 original size:44 final size:42
Alignment explanation
Indices: 76681498--76681599 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 42
76681488 TGTCTAAATA
* *
76681498 AATGGCACTATGTGTACGATACTGATATAAATTCGGTCTATTGT
1 AATGGCACTAAGTGTACGATACTGATATAAATTCGG-CTAAT-T
**
76681542 AATGGCACTAAGTGTACGATACT-ATTATAGCTTCGGCTAATT
1 AATGGCACTAAGTGTACGATACTGA-TATAAATTCGGCTAATT
76681584 AATTGGCACTAAGTGT
1 AA-TGGCACTAAGTGT
76681600 GTGAGTTTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
42 3 0.06
43 18 0.35
44 31 0.60
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
AATGGCACTAAGTGTACGATACTGATATAAATTCGGCTAATT
Found at i:76682345 original size:85 final size:85
Alignment explanation
Indices: 76682202--76682380 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
76682192 GGCCGGCCAT
76682202 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
76682267 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
76682287 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
76682352 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
76682372 GGGCATGGG
1 GAGCATGGG
76682381 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:76684371 original size:47 final size:47
Alignment explanation
Indices: 76684320--76684708 Score: 526
Period size: 47 Copynumber: 8.1 Consensus size: 47
76684310 TTAGGATTTT
* *
76684320 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
**
76684367 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
76684418 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
** *
76684465 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCATATGTGTGATAAGGCCGAATGGCCA
* *
76684518 GTGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
76684565 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* *
76684612 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * *
76684659 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
76684706 ATG
1 ATG
76684709 CGAAACGTGT
Statistics
Matches: 308, Mismatches: 24, Indels: 20
0.88 0.07 0.06
Matches are distributed among these distances:
47 219 0.71
48 1 0.00
49 2 0.01
51 43 0.14
52 1 0.00
53 42 0.14
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Done.