Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 239 of 295
Found at i:76684541 original size:100 final size:98
Alignment explanation
Indices: 76684320--76684708 Score: 587
Period size: 94 Copynumber: 4.0 Consensus size: 98
76684310 TTAGGATTTT
*
76684320 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
76684385 CGTATATATATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
*
76684418 ATGTGATGAATGTGAACATGCGTATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
76684483 TGTATATATATATGCGTGATAAGGCCGAATGGCCA
66 TG--TATATATATGTGTGATAAGGCCGAATGGCCA
*
76684518 GTGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-C
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
***
76684582 ---ATGCGTATGTGTGATAAGGCCGAATGGCCA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
* * * *
76684612 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
*
76684677 TG-A-ATATATGTG-G-TAAGGCCGAATGGCTA
66 TGTATATATATGTGTGATAAGGCCGAATGGCCA
76684706 ATG
1 ATG
76684709 CGAAACGTGT
Statistics
Matches: 267, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
94 103 0.39
95 1 0.00
96 6 0.02
97 1 0.00
98 64 0.24
99 1 0.00
100 91 0.34
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (98 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACC
TGTATATATATGTGTGATAAGGCCGAATGGCCA
Found at i:76684568 original size:147 final size:142
Alignment explanation
Indices: 76684320--76684708 Score: 541
Period size: 147 Copynumber: 2.7 Consensus size: 142
76684310 TTAGGATTTT
* * * *
76684320 ATGTGATGGATGTGAACATGCGTATGT-GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAACATACATATATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-
76684384 CCGTAT-ATATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTG
65 -C--ATGA-ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTG
76684448 ATAAGGCCGAATGGCCA
126 ATAAGGCCGAATGGCCA
* *
76684465 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCAGTGTGATGAATG
1 ATGTGATGAATGTGAA-C---ATACATATATG-GTGATAAGGCCGAATGGCCAATGTGATGAATG
** *
76684530 TGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTG
61 TGAACATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTG
76684595 ATAAGGCCGAATGGCCA
126 ATAAGGCCGAATGGCCA
* *
76684612 ATGTGATGAATGTGAACATGCATATAT-GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
1 ATGTGATGAATGTGAACATACATATATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
* * *
76684676 ATGAATATATGTGGTAAGGCCGAATGGCTAATG
66 ATGAATATGTGTGATAAGGCCGAATGGCCAATG
76684709 CGAAACGTGT
Statistics
Matches: 219, Mismatches: 18, Indels: 18
0.86 0.07 0.07
Matches are distributed among these distances:
141 63 0.29
143 8 0.04
145 15 0.07
146 2 0.01
147 89 0.41
149 7 0.03
151 35 0.16
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (142 bp):
ATGTGATGAATGTGAACATACATATATGGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAC
ATGAATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGCGTGATAAG
GCCGAATGGCCA
Found at i:76684771 original size:46 final size:46
Alignment explanation
Indices: 76684682--76684772 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
76684672 GAACATGAAT
* * * *
76684682 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
76684728 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
76684773 TGTTTATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:76684969 original size:37 final size:37
Alignment explanation
Indices: 76684919--76685064 Score: 256
Period size: 37 Copynumber: 3.9 Consensus size: 37
76684909 GGAAATATAT
*
76684919 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76684956 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
76684993 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
76685030 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
76685065 CGTCTGAGCT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 105 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:76686603 original size:40 final size:40
Alignment explanation
Indices: 76686320--76686591 Score: 409
Period size: 40 Copynumber: 6.8 Consensus size: 40
76686310 GAGAATTGAG
* *
76686320 AGTGATATATCTGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
76686360 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
76686400 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
76686440 AGTGATATATCTGGGCTAAGTCTCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
76686480 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** *
76686520 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
76686560 GGTGTTATATCCGGGCTAGGTCCCGAGGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
76686592 ATCATGCTGG
Statistics
Matches: 209, Mismatches: 23, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 209 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:76688501 original size:85 final size:85
Alignment explanation
Indices: 76688358--76688536 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
76688348 GGCCGGCCAT
76688358 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
76688423 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
76688443 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
76688508 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
76688528 GGGCATGGG
1 GAGCATGGG
76688537 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:76690499 original size:37 final size:37
Alignment explanation
Indices: 76690449--76690561 Score: 199
Period size: 37 Copynumber: 3.1 Consensus size: 37
76690439 TACATGAAAA
76690449 TTTGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TTTGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
76690486 TTTGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
1 TTTGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
* * *
76690523 TTTGTCCGGGTAAGACCCGATAACTTCATGTGGAGAT
1 TTTGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
76690560 TT
1 TT
76690562 CGTCTGAGCT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 73 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (37 bp):
TTTGTCCGGGTAAGACCCGATGACTACGTGTGGAGAT
Found at i:76692746 original size:68 final size:68
Alignment explanation
Indices: 76692674--76692849 Score: 175
Period size: 68 Copynumber: 2.6 Consensus size: 68
76692664 CATCATGTGT
** * * *
76692674 ACAAGAGAGCTACGAGATACTATGTAGTAGCTAGGTCACATGTGTGA-T-ACGGGATGTATC-CC
1 ACAAGAGAGCTACGAGATA-TAAAT-GTAGCTAGGTCACATGTGTGATTCAAGGGAAGGA-CACC
76692736 ATGTAG
63 ATGTAG
* * *
76692742 ACAAGAGAGCTACGGGAGAGATAAATGTAGCTAGGTCGCATGTGTGATTCCAAGTGAAGGACACC
1 ACAAGAGAGCTAC--GAGATATAAATGTAGCTAGGTCACATGTGTGATT-CAAGGGAAGGACACC
76692807 ATGTAG
63 ATGTAG
*
76692813 ACAAGAGAGCTACGAGATA-AACTG--GCTAGGTCACATG
1 ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATG
76692850 GGTGGTACTA
Statistics
Matches: 91, Mismatches: 11, Indels: 14
0.78 0.09 0.12
Matches are distributed among these distances:
66 12 0.13
68 37 0.41
69 9 0.10
70 6 0.07
71 27 0.30
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGATATAAATGTAGCTAGGTCACATGTGTGATTCAAGGGAAGGACACCATG
TAG
Found at i:76710572 original size:27 final size:27
Alignment explanation
Indices: 76710533--76710918 Score: 486
Period size: 27 Copynumber: 14.3 Consensus size: 27
76710523 CCCAAATTAA
*
76710533 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
76710560 TAAAATGACTGTTTTGCCCTTTTGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
76710587 TAAAATGATTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
76710614 TAAAATAACTGTTTTCCCCTTGTGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
76710641 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
76710668 T-AAATGACTATTTTGCCCTTAAGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * * *
76710694 TAAAATGATTATTTTGCCTTTGTGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* **
76710721 TAAAATGACTGTTTTGCTCTTATTTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* **
76710748 TAAAATAACTGTTTTGCCCTTATTTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
76710775 TAAAATGACTATTTTACCCTTGTGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
76710802 TATAATGACTATTTTACCCTTTATGAGG
1 TAAAATGACTGTTTTGCCC-TTATGAGG
*
76710830 TATAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
76710857 TAAAATGACTGTTTTGCCATTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
76710884 TAAAATGACTGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
76710911 TAAAATGA
1 TAAAATGA
76710919 TTGTGTTTTA
Statistics
Matches: 312, Mismatches: 45, Indels: 4
0.86 0.12 0.01
Matches are distributed among these distances:
26 24 0.08
27 264 0.85
28 24 0.08
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:76714166 original size:46 final size:46
Alignment explanation
Indices: 76714116--76714280 Score: 242
Period size: 46 Copynumber: 3.6 Consensus size: 46
76714106 ACATATCTCA
* *
76714116 CATTAGCCATTTGGCTTGACCACATATCCATCCCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCCCATACACGTTTCG
* *
76714162 CATTAGCCATTCGGCTTTACCTCATATCC-GCCTCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCC-CATACACGTTTCG
* * *
76714208 CATTAGCCATTCGGCTTTACCTCATATCTATCTCATACACGTTTCG
1 CATTAGCCATTCGGCTTTACCACATATCCATCCCATACACGTTTCG
*
76714254 CATTAGCCATTAGGCTTTACCACATAT
1 CATTAGCCATTCGGCTTTACCACATAT
76714281 ATACACTTCC
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
45 2 0.02
46 105 0.97
47 1 0.01
ACGTcount: A:0.23, C:0.32, G:0.12, T:0.33
Consensus pattern (46 bp):
CATTAGCCATTCGGCTTTACCACATATCCATCCCATACACGTTTCG
Found at i:76714325 original size:47 final size:47
Alignment explanation
Indices: 76714254--76714725 Score: 732
Period size: 47 Copynumber: 10.1 Consensus size: 47
76714244 ACACGTTTCG
* * * * * * *
76714254 CATTAGCCATTAGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCA-TGTTCACATTCATCA
*
76714301 CATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
76714348 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
76714395 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATTA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
76714442 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT-ATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
76714488 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
76714535 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
76714582 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
76714629 CATTGGCCATTCGGCCTTATCTCATATATGCATGCTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * **
76714676 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
76714723 CAT
1 CAT
76714726 AAAATCCTAA
Statistics
Matches: 401, Mismatches: 22, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
46 46 0.11
47 355 0.89
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:76714528 original size:187 final size:188
Alignment explanation
Indices: 76714294--76714725 Score: 731
Period size: 187 Copynumber: 2.3 Consensus size: 188
76714284 CACTTCCACG
*
76714294 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
*
76714359 CGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
66 CGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* *
76714424 GCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
131 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
*
76714482 TT-ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
* *
76714546 CGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 CGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* *
76714611 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGCTCACA
131 GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
* * * **
76714669 TTCATCACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
76714726 AAAATCCTAA
Statistics
Matches: 228, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
187 178 0.78
188 50 0.22
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (188 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACACATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
GCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACA
Found at i:76714554 original size:234 final size:235
Alignment explanation
Indices: 76714294--76714725 Score: 740
Period size: 234 Copynumber: 1.8 Consensus size: 235
76714284 CACTTCCACG
* *
76714294 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
76714359 CGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
66 CGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* * * **
76714424 GCATGTTCACATTCATTACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATT-ATCA
131 GCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCATCA
76714488 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
196 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
76714528 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
* * *
76714593 CGGCCTTATCACATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCTCATATAT
66 CGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
* * *
76714658 GCATGCTCACATTCATCACATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
131 GCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCATCA
76714723 CAT
196 CAT
76714726 AAAATCCTAA
Statistics
Matches: 184, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
234 177 0.96
235 7 0.04
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (235 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCACATTGGCCATT
CGGCCTTATCACATATATGCATATTCACATTCATCACATTGGCCATTCGGCCTTATCACACATAT
GCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACACATATACACATTCACATTCATCA
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:76719094 original size:43 final size:43
Alignment explanation
Indices: 76719000--76719112 Score: 131
Period size: 43 Copynumber: 2.6 Consensus size: 43
76718990 TCGAGATGTG
* * * *
76719000 ATTACATGTAAGACCATGTCTGGGGCATTGGCATTGTATTGAT
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCGAT
76719043 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAATCGAT
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-T-ATCGAT
***
76719088 -TT-CGTGTAAGATTTTGTCTGGGACA
1 ATTACGTGTAAGACCATGTCTGGGACA
76719113 GCGGCATCAA
Statistics
Matches: 61, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
43 53 0.87
44 3 0.05
45 5 0.08
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCGAT
Found at i:76721498 original size:42 final size:42
Alignment explanation
Indices: 76721451--76721602 Score: 119
Period size: 42 Copynumber: 3.6 Consensus size: 42
76721441 TACGATGCCA
** *
76721451 ATGCCATGTCCCAGACGTGGTCTTACACGGGATTTCACATCG
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCG
* * ** * **
76721493 ATGCCAT-ACCTCGGATATGGTCTTATACGAAATCTCATTTCG
1 ATGCCATGTCC-CAGACGTGGTCTTACACGAAATCTCACATCG
* * *
76721535 ATGCCATGTCCCAGACGTGGTC-TACATGAAATCTCATATCA
1 ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCG
** * **
76721576 ACACCATATCCCAGATATGGTCTTACA
1 ATGCCATGTCCCAGACGTGGTCTTACA
76721603 TGATAACATA
Statistics
Matches: 84, Mismatches: 23, Indels: 6
0.74 0.20 0.05
Matches are distributed among these distances:
41 34 0.40
42 48 0.57
43 2 0.02
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGCCATGTCCCAGACGTGGTCTTACACGAAATCTCACATCG
Found at i:76724526 original size:27 final size:27
Alignment explanation
Indices: 76724478--76724690 Score: 224
Period size: 27 Copynumber: 7.9 Consensus size: 27
76724468 GCGAGGCTGC
* *
76724478 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
76724505 CAGATATTGTGGCAGAGCCACCAG-GA
1 CAGATATTGTGGCAGAGCCACCAGATA
76724531 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
76724558 CAAATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
76724585 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
76724612 CAGATAATTGTGGCATAGCCATCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
76724639 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
76724666 CAGATATTTGTGGCATAGCCACCAG
1 CAGATA-TTGTGGCAGAGCCACCAG
76724691 GACGCTTCCT
Statistics
Matches: 157, Mismatches: 17, Indels: 24
0.79 0.09 0.12
Matches are distributed among these distances:
26 12 0.08
27 139 0.89
28 6 0.04
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:76724568 original size:54 final size:54
Alignment explanation
Indices: 76724496--76724693 Score: 344
Period size: 54 Copynumber: 3.7 Consensus size: 54
76724486 GTGACGAAGT
*
76724496 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
76724550 CACCAGATCAAATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
76724604 CACCAGATCAGATAATTGTGGCATAGCCATCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
*
76724658 CACCAGATCAGATATTTGTGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
76724694 GCTTCCTCCA
Statistics
Matches: 137, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
53 4 0.03
54 133 0.97
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:76730722 original size:40 final size:40
Alignment explanation
Indices: 76730663--76730843 Score: 285
Period size: 40 Copynumber: 4.5 Consensus size: 40
76730653 TATTCGAATG
76730663 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
76730703 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTAACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
76730743 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
76730783 ATATCCGGGCTAAGACCCGAAGGCATTTGTG-TGAGTTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACT
*
76730823 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
76730844 ATACTTGGGT
Statistics
Matches: 131, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 14 0.11
40 117 0.89
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:76734294 original size:49 final size:47
Alignment explanation
Indices: 76734194--76734322 Score: 134
Period size: 49 Copynumber: 2.7 Consensus size: 47
76734184 AGGATTCTAT
* * * * * *
76734194 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAAC
* *
76734241 GTGATGAATGTGAAAGTGTGTATATATGTGATAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAAC
* *
76734290 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
76734323 TCCCGAAGGG
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 29 0.43
49 38 0.56
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.27
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
Found at i:76736397 original size:43 final size:43
Alignment explanation
Indices: 76736349--76736451 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
76736339 TTGGTTTTCA
76736349 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATGG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATGG
*
76736392 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATGG
76736435 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
76736452 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.16, G:0.37, T:0.25
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATGG
Found at i:76736472 original size:29 final size:29
Alignment explanation
Indices: 76736437--76736506 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
76736427 TGAGATTGGC
* *
76736437 ACTAAGTGTGCGGGCTTGAAA-TGCATGGA
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGA
* *
76736466 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGAGTTGAAAGTACATGGA
76736495 ACTAAGTGTGCG
1 ACTAAGTGTGCG
76736507 TGGTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGA
Found at i:76736942 original size:40 final size:40
Alignment explanation
Indices: 76736819--76737054 Score: 192
Period size: 40 Copynumber: 5.9 Consensus size: 40
76736809 TCGAATGATG
** *
76736819 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
76736859 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCAAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
76736899 TCCGGGCTAAGTCCCGAGGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
76736939 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
76736979 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
76737019 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
76737055 CGTGTATTCG
Statistics
Matches: 158, Mismatches: 34, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
39 1 0.01
40 138 0.87
41 19 0.12
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:76740990 original size:49 final size:47
Alignment explanation
Indices: 76740890--76741018 Score: 134
Period size: 49 Copynumber: 2.7 Consensus size: 47
76740880 AGGATTCTAT
* * * * * *
76740890 GTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGAT
1 GTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAAC
* *
76740937 GTGATGAATGTGAAAGTGTGTATATATGTGATAGGGCCGAGTGGCCAAC
1 GTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCGAATGGCCAAC
* *
76740986 GTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GTGATGAATGTGAAAGTGTATATATGTGATAAG
76741019 TCCCGAAGGG
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 29 0.43
49 38 0.56
ACGTcount: A:0.32, C:0.09, G:0.33, T:0.27
Consensus pattern (47 bp):
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAC
Found at i:76745933 original size:27 final size:27
Alignment explanation
Indices: 76745903--76745967 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
76745893 GGGTAAAATA
76745903 GTCATTTTAC-CTTACAAGGGTATGTCG
1 GTCATTTTACAC-TACAAGGGTATGTCG
*
76745930 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
* *
76745957 ATAATTTTACA
1 GTCATTTTACA
76745968 AATCGGGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:76745977 original size:27 final size:27
Alignment explanation
Indices: 76745946--76746195 Score: 229
Period size: 27 Copynumber: 9.3 Consensus size: 27
76745936 TTACACTACA
76745946 AGGGTATTTCGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* * * *
76745973 GGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCG
* * *
76746000 AAGGCATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
** * * * *
76746027 AAAGTATTTTGGTAATTTTAGAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
76746054 GGGGTATTTTGATAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
76746081 AGGGTATTT-TAGTAATTTCAC-AATCG
1 AGGGTATTTCGA-TAATTTTACAAATCG
* *
76746107 AGGGTATTTTGATAATTTTACAAATTG
1 AGGGTATTTCGATAATTTTACAAATCG
* *
76746134 AGGGTTTTTCAATAA-TTTACAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATC-G
* * *
76746160 GGGGTACTTCGGTAATTTTACAAATCG
1 AGGGTATTTCGATAATTTTACAAATCG
*
76746187 GGGGTATTT
1 AGGGTATTT
76746196 TAGTAATTTC
Statistics
Matches: 179, Mismatches: 38, Indels: 12
0.78 0.17 0.05
Matches are distributed among these distances:
26 42 0.23
27 136 0.76
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
AGGGTATTTCGATAATTTTACAAATCG
Found at i:76746041 original size:54 final size:54
Alignment explanation
Indices: 76745946--76746204 Score: 256
Period size: 54 Copynumber: 4.8 Consensus size: 54
76745936 TTACACTACA
* * * *
76745946 AGGGTATTTCGATAATTTTACAAATCGGGGGTGTTTCGGTAATTTTACAAATCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
* * * ** * *
76746000 AAGGCATTTCGATAATTTTACAAATTGAAAGTATTTTGGTAATTTTAGAAATTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
* * * *
76746054 GGGGTATTTTGATAATTTTACAAATCGAGGGTATTTTAGTAATTTCAC-AATCG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
* * **
76746107 AGGGTATTTTGATAATTTTACAAATTGAGGGT-TTTTCAATAA-TTTACAAA-CTG
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTT-GGTAATTTTACAAATC-G
* * * * *
76746160 GGGGTACTTCGGTAATTTTACAAATCGGGGGTATTTTAGTAATTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTT
76746205 CTCTTTATTA
Statistics
Matches: 167, Mismatches: 33, Indels: 10
0.80 0.16 0.05
Matches are distributed among these distances:
52 9 0.05
53 71 0.43
54 87 0.52
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.40
Consensus pattern (54 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTTGGTAATTTTACAAATCG
Found at i:76746553 original size:28 final size:28
Alignment explanation
Indices: 76746534--76746612 Score: 158
Period size: 28 Copynumber: 2.8 Consensus size: 28
76746524 CCAAATCTCG
76746534 TTCACATGGCCCATCAGGCCCAATCACA
1 TTCACATGGCCCATCAGGCCCAATCACA
76746562 TTCACATGGCCCATCAGGCCCAATCACA
1 TTCACATGGCCCATCAGGCCCAATCACA
76746590 TTCACATGGCCCATCAGGCCCAA
1 TTCACATGGCCCATCAGGCCCAA
76746613 CTACTCCCAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.28, C:0.39, G:0.15, T:0.18
Consensus pattern (28 bp):
TTCACATGGCCCATCAGGCCCAATCACA
Found at i:76748871 original size:23 final size:23
Alignment explanation
Indices: 76748796--76748871 Score: 77
Period size: 23 Copynumber: 3.3 Consensus size: 23
76748786 CTGATAAACA
* *
76748796 GTAAGCTCTATTGAGCTAAAATG
1 GTAAGCTCTATCGAGCTGAAATG
* *
76748819 GTAGGCTCTATCGAGTTGAACA--
1 GTAAGCTCTATCGAGCTGAA-ATG
76748841 GTAAGCTC-ATACGAGCTGAAATG
1 GTAAGCTCTAT-CGAGCTGAAATG
76748864 GTAAGCTC
1 GTAAGCTC
76748872 CAATGACCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 3 0.07
22 15 0.35
23 24 0.56
24 1 0.02
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (23 bp):
GTAAGCTCTATCGAGCTGAAATG
Found at i:76758503 original size:4 final size:4
Alignment explanation
Indices: 76758494--76758527 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
76758484 AAGTTTTATT
76758494 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
76758528 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:76758535 original size:22 final size:22
Alignment explanation
Indices: 76758477--76758536 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
76758467 AAGTGGCCCA
*
76758477 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
76758501 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
76758522 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
76758537 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:76760947 original size:39 final size:40
Alignment explanation
Indices: 76760755--76760956 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
76760745 CGGGGTTTAT
*
76760755 CCGGATATAGCT-ACT-GCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
76760794 CCGGTTATAGTAACTTGCACAAATGCCTTCAGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
76760834 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
76760874 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT-GC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
76760913 CTGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
76760953 CCGG
1 CCGG
76760957 TTATCATCCA
Statistics
Matches: 146, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 47 0.32
40 95 0.65
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:76778932 original size:42 final size:42
Alignment explanation
Indices: 76778885--76779016 Score: 124
Period size: 43 Copynumber: 3.1 Consensus size: 42
76778875 GGAAAACTCG
* * *
76778885 TACATGATGTATCGTACCAATGCCATGTCCCAGACATGGTCT
1 TACATGATGTCTCATACCGATGCCATGTCCCAGACATGGTCT
** * *
76778927 TACATGGAAATCTCATATCGATGCCAATAG-CCTAG-CTATGGTCT
1 TACAT-GATGTCTCATACCGATGCC-AT-GTCCCAGAC-ATGGTCT
* * *
76778971 TACACGATGCCTCATGCCGATGCCATGTCCCAGACATGGTCT
1 TACATGATGTCTCATACCGATGCCATGTCCCAGACATGGTCT
76779013 TACA
1 TACA
76779017 CTGGCTCACA
Statistics
Matches: 70, Mismatches: 14, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
41 1 0.01
42 22 0.31
43 29 0.41
44 17 0.24
45 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (42 bp):
TACATGATGTCTCATACCGATGCCATGTCCCAGACATGGTCT
Found at i:76779062 original size:48 final size:48
Alignment explanation
Indices: 76778984--76779290 Score: 409
Period size: 48 Copynumber: 6.4 Consensus size: 48
76778974 ACGATGCCTC
76778984 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
** * * * *
76779032 ATGTTGGTGCCATGTCCTAGACATGGTCTTACACTGGCTCACAAAATA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * * *
76779080 ATGCCGATGCCATTTTCCAAACATAGTCTTACACTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
76779128 ATGCCGATGCCATGTCCCAGGCATGGTCTTACACTGGCTCACACAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * *
76779176 ATGTCGATGCCATGACCCAGACATGGTCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
* * * * *
76779224 ATGTCGATGCTATGTCCTAGATATGGTCTTACACTAGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
*
76779272 ATGCTGAT-CCATGTCCCAG
1 ATGCCGATGCCATGTCCCAG
76779291 TCTTATACGG
Statistics
Matches: 222, Mismatches: 37, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
47 9 0.04
48 213 0.96
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACA
Found at i:76782001 original size:27 final size:26
Alignment explanation
Indices: 76781949--76782007 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
76781939 ATATATATAT
*
76781949 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
76781975 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
76782002 ATATCT
1 ATATCT
76782008 AGCAGCTTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:76789055 original size:16 final size:16
Alignment explanation
Indices: 76789034--76789069 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
76789024 ATGGGTTGAA
76789034 AACGGGCCAATGGGCC
1 AACGGGCCAATGGGCC
*
76789050 AACGGGCCAATGGTCC
1 AACGGGCCAATGGGCC
76789066 AACG
1 AACG
76789070 AGCCCACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.33, T:0.08
Consensus pattern (16 bp):
AACGGGCCAATGGGCC
Found at i:76789403 original size:27 final size:26
Alignment explanation
Indices: 76789351--76789409 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
76789341 CTACATATAT
*
76789351 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
76789377 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
76789404 ATATCT
1 ATATCT
76789410 AGCAACTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:76799168 original size:16 final size:15
Alignment explanation
Indices: 76799149--76799184 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
76799139 TTTCATTAAG
76799149 TTTTTAAGACTCATT
1 TTTTTAAGACTCATT
*
76799164 TTTTTAAGATTCATT
1 TTTTTAAGACTCATT
76799179 TGTTTT
1 T-TTTT
76799185 CCTTTTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.22, C:0.08, G:0.08, T:0.61
Consensus pattern (15 bp):
TTTTTAAGACTCATT
Found at i:76810645 original size:19 final size:19
Alignment explanation
Indices: 76810621--76810658 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
76810611 TGGGCCTCGA
76810621 TGGGCCAAAATAGGC-CGTG
1 TGGGCC-AAATAGGCTCGTG
*
76810640 TGGGCCTAATAGGCTCGTG
1 TGGGCCAAATAGGCTCGTG
76810659 GGCCCCACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.21, C:0.21, G:0.37, T:0.21
Consensus pattern (19 bp):
TGGGCCAAATAGGCTCGTG
Found at i:76813123 original size:48 final size:48
Alignment explanation
Indices: 76812942--76813110 Score: 259
Period size: 48 Copynumber: 3.5 Consensus size: 48
76812932 CCTCTCGCTA
* *
76812942 ATGCCATGTCCCAGACATGGTCTTACGCTGGCTCACATAACCATG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCT-G
* **
76812990 ATGCCATGTCCCAAACATGGTCTTACACTGGCTCACATAACGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTG
* *
76813038 ATGCCATGTCCCGGATATGGTCTTACACTGGCTCACATAACGATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTG
76813086 ATGCCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
76813111 TATGGGATCA
Statistics
Matches: 108, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
48 108 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTG
Found at i:76813166 original size:90 final size:93
Alignment explanation
Indices: 76812941--76813155 Score: 276
Period size: 96 Copynumber: 2.3 Consensus size: 93
76812931 GCCTCTCGCT
* *
76812941 AATGCCATGTCCCAGACATGGTCTTACGCTGGCTCACATAACCATGTCGATGCCATGTCCCAAAC
1 AATGCCATGTCCCAGATATGGTCTTACACTGGCTCACATAACCATGTCGATGCCATGTCCCAAAC
76813006 ATGGTCTTACACTGGCTCACATAACGATGCC
66 ATGGTCTTACACTGG--C-CATAACGATGCC
* * *
76813037 AATGCCATGTCCCGGATATGGTCTTACACTGGCTCACATAACGATG-CTGATGCCATGTCCCAGA
1 AATGCCATGTCCCAGATATGGTCTTACACTGGCTCACATAACCATGTC-GATGCCATGTCCCAAA
* * *
76813101 CATGGTCTTATA-TGG-GATCAC-ATGCC
65 CATGGTCTTACACTGGCCATAACGATGCC
* *
76813127 AATGCCATATCCCATATATGGTCTTACAC
1 AATGCCATGTCCCAGATATGGTCTTACAC
76813156 GGTTACACAT
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
90 31 0.29
91 4 0.04
95 4 0.04
96 68 0.64
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (93 bp):
AATGCCATGTCCCAGATATGGTCTTACACTGGCTCACATAACCATGTCGATGCCATGTCCCAAAC
ATGGTCTTACACTGGCCATAACGATGCC
Found at i:76823367 original size:46 final size:46
Alignment explanation
Indices: 76823313--76823485 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
76823303 TGGTTGAGCA
*
76823313 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAAG
* * * *
76823359 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAAG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AAG
* * *
76823404 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAAG
*
76823452 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
76823486 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 6 0.06
46 57 0.54
47 28 0.26
48 4 0.04
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAAG
Found at i:76823468 original size:93 final size:93
Alignment explanation
Indices: 76823309--76823480 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
76823299 AGGATGGTTG
*
76823309 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAG
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAG
76823374 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * *
76823402 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC-AAACTCGTTGA
76823466 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
76823481 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
AGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:76823746 original size:19 final size:20
Alignment explanation
Indices: 76823709--76823746 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
76823699 ATAAGGTGGT
76823709 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
76823729 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
76823747 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:76830901 original size:46 final size:46
Alignment explanation
Indices: 76830851--76831023 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
76830841 TGGTTGAGCA
*
76830851 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
76830897 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
76830944 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
76830990 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
76831024 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:76831007 original size:93 final size:93
Alignment explanation
Indices: 76830848--76831018 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
76830838 GGATGGTTGA
* *
76830848 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
76830913 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
76830941 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
76831006 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
76831019 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76831285 original size:19 final size:20
Alignment explanation
Indices: 76831248--76831285 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
76831238 ATAAGGTGGT
76831248 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
76831268 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
76831286 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:76847513 original size:7 final size:6
Alignment explanation
Indices: 76847470--76847525 Score: 53
Period size: 7 Copynumber: 9.0 Consensus size: 6
76847460 ATCAAATGAG
*
76847470 AGAAAA AGAAAA GAGAGAAA ATACAAA AG-AAA AGAAAA ATGAAAA AG-AAA
1 AGAAAA AGAAAA -AGA-AAA AGA-AAA AGAAAA AGAAAA A-GAAAA AGAAAA
76847520 AGAAAA
1 AGAAAA
76847526 TTCAAAAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
5 10 0.24
6 14 0.33
7 15 0.36
8 3 0.07
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.04
Consensus pattern (6 bp):
AGAAAA
Found at i:76847535 original size:19 final size:18
Alignment explanation
Indices: 76847472--76847536 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
76847462 CAAATGAGAG
76847472 AAAAAGAAAAGAGAGAAAATA
1 AAAAAG-AAA-AGA-AAAATA
* *
76847493 CAAAAGAAAAGAAAAATG
1 AAAAAGAAAAGAAAAATA
*
76847511 AAAAAGAAAAGAAAATTCA
1 AAAAAGAAAAGAAAAAT-A
76847530 AAAAAGA
1 AAAAAGA
76847537 GAATGAAAAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
18 20 0.53
19 10 0.26
20 3 0.08
21 5 0.13
ACGTcount: A:0.75, C:0.03, G:0.15, T:0.06
Consensus pattern (18 bp):
AAAAAGAAAAGAAAAATA
Found at i:76854055 original size:20 final size:19
Alignment explanation
Indices: 76854032--76854096 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
76854022 AAGCTCAAAC
76854032 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
76854052 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
76854072 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
76854092 GAGCT
1 GAGCT
76854097 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:76855383 original size:17 final size:18
Alignment explanation
Indices: 76855361--76855394 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76855351 ACAACACTCC
*
76855361 TTTCTT-CTTCACTCTCG
1 TTTCTTCCTTCAATCTCG
76855378 TTTCTTCCTTCAATCTC
1 TTTCTTCCTTCAATCTC
76855395 ACTCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.09, C:0.35, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTCTTCCTTCAATCTCG
Found at i:76856448 original size:29 final size:27
Alignment explanation
Indices: 76856410--76856479 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 27
76856400 CTCGCAAGAC
*
76856410 TTTTCA-CTTTTTTTAACTTGATTTTT
1 TTTTCACCTTTTTTTAACTCGATTTTT
**
76856436 TTTGGTCACCTTTTTTTTGCTCGATTTTT
1 TTT--TCACCTTTTTTTAACTCGATTTTT
*
76856465 TTTTCACTTTTTTTT
1 TTTTCACCTTTTTTT
76856480 TGAATTTTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.08
27 11 0.30
28 3 0.08
29 20 0.54
ACGTcount: A:0.10, C:0.14, G:0.07, T:0.69
Consensus pattern (27 bp):
TTTTCACCTTTTTTTAACTCGATTTTT
Found at i:76856475 original size:12 final size:12
Alignment explanation
Indices: 76856459--76856496 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
76856449 TTTTTGCTCG
76856459 ATTTTTTTTTCA
1 ATTTTTTTTTCA
* *
76856471 CTTTTTTTTTGA
1 ATTTTTTTTTCA
76856483 ATTTTTTTTTCA
1 ATTTTTTTTTCA
76856495 AT
1 AT
76856497 CAATTTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.74
Consensus pattern (12 bp):
ATTTTTTTTTCA
Found at i:76858150 original size:20 final size:19
Alignment explanation
Indices: 76858127--76858191 Score: 51
Period size: 20 Copynumber: 3.3 Consensus size: 19
76858117 AAGCTCAAAC
76858127 GAGCTAAAGTAAGCTAAATT
1 GAGCTAAAGT-AGCTAAATT
76858147 GAGCTCAAACG-AGCTAAATT
1 GAGCT-AAA-GTAGCTAAATT
* * * *
76858167 AAGCTCATGTGAGCTAAATC
1 GAGCTAAAGT-AGCTAAATT
76858187 GAGCT
1 GAGCT
76858192 GGGAAAAACT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 30 0.83
21 3 0.08
22 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.23
Consensus pattern (19 bp):
GAGCTAAAGTAGCTAAATT
Found at i:76863748 original size:20 final size:20
Alignment explanation
Indices: 76863725--76863772 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
76863715 AGCTCCGTGC
76863725 AGCTCAACTCAGCTCATTTG
1 AGCTCAACTCAGCTCATTTG
*** *
76863745 AGCTCGTTTCAGCTCGTTTG
1 AGCTCAACTCAGCTCATTTG
76863765 AGCTCAAC
1 AGCTCAAC
76863773 CGAGCTTACT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (20 bp):
AGCTCAACTCAGCTCATTTG
Found at i:76863986 original size:22 final size:21
Alignment explanation
Indices: 76863955--76863999 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
76863945 TTATGTCTAA
*
76863955 ATTTAATTATTGCTTTTAAATT
1 ATTTAATTATT-ATTTTAAATT
*
76863977 ATTTAGTTATTATTTTAAATT
1 ATTTAATTATTATTTTAAATT
76863998 AT
1 AT
76864000 AATTATATGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
ATTTAATTATTATTTTAAATT
Found at i:76864040 original size:13 final size:13
Alignment explanation
Indices: 76864022--76864047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76864012 AGTTGTGTGC
76864022 TATTTAATTATGT
1 TATTTAATTATGT
76864035 TATTTAATTATGT
1 TATTTAATTATGT
76864048 AGGTTAGCCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTAATTATGT
Found at i:76866437 original size:15 final size:17
Alignment explanation
Indices: 76866412--76866453 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
76866402 AAAGAAAGTC
76866412 AAAATGAAAATG-AA-AG
1 AAAA-GAAAATGAAAGAG
76866428 AAAAGAAAATGAAAGAG
1 AAAAGAAAATGAAAGAG
76866445 AAAAGAAAA
1 AAAAGAAAA
76866454 AGAATTGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.29
16 6 0.25
17 11 0.46
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (17 bp):
AAAAGAAAATGAAAGAG
Found at i:76867469 original size:10 final size:10
Alignment explanation
Indices: 76867454--76867480 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
76867444 TACTCCTTCA
76867454 AGCTCAAATC
1 AGCTCAAATC
76867464 AGCTCAAATC
1 AGCTCAAATC
76867474 AGCTCAA
1 AGCTCAA
76867481 CTTCAACTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:76869479 original size:15 final size:16
Alignment explanation
Indices: 76869459--76869490 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
76869449 ATTATATGAA
76869459 TAATTATA-TTTTATT
1 TAATTATATTTTTATT
76869474 TAATTATATTTTTATT
1 TAATTATATTTTTATT
76869490 T
1 T
76869491 CTTTGTAGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TAATTATATTTTTATT
Found at i:76874517 original size:40 final size:40
Alignment explanation
Indices: 76874438--76874614 Score: 198
Period size: 40 Copynumber: 4.5 Consensus size: 40
76874428 CGGATGATAA
* * ** *
76874438 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* * *
76874478 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTG-TTATAT
* * *
76874518 CCGGCCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
* *
76874558 CTGGGCTAAGACCCGAAGGCATTTATACGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
76874598 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
76874615 ATGCTTGGGT
Statistics
Matches: 114, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 96 0.84
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTATGCGAGTTGTTATAT
Found at i:76874576 original size:80 final size:79
Alignment explanation
Indices: 76874438--76874614 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 79
76874428 CGGATGATAA
* * *
76874438 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGGCATTTA
1 CCGG-CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
* *
76874503 TGCTAG-TGATTATAT
65 TACGAGTTG-TTATAT
* *
76874518 CCGGCCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCTGGGCTAAGACCCGAAGGCATTTA
1 CCGG-CTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTA
76874583 TACGAGTTGTTATAT
65 TACGAGTTGTTATAT
76874598 CCGGCTAA-ATCCCGAAG
1 CCGGCTAAGA-CCCGAAG
76874615 ATGCTTGGGT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 73 0.84
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTAAGACCCGAAGGCATTTAT
ACGAGTTGTTATAT
Found at i:76881209 original size:20 final size:20
Alignment explanation
Indices: 76881184--76881238 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
76881174 ACGAGTTAAA
* *
76881184 TTGAGCTTGAATGAGCTGAC
1 TTGAGCTCGAATGAGCTAAC
* *
76881204 TTGAGCACGAATGAGGTAAC
1 TTGAGCTCGAATGAGCTAAC
76881224 TTGAGCTCGAATGAG
1 TTGAGCTCGAATGAG
76881239 TTGAACCACA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.25
Consensus pattern (20 bp):
TTGAGCTCGAATGAGCTAAC
Found at i:76882245 original size:42 final size:42
Alignment explanation
Indices: 76882183--76882279 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
76882173 AGATTATGAG
* * * *
76882183 AGAAAATGAGAGGATTTTGAATGAAATCGAGAGAAGAAATAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
76882225 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
1 AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
*
76882267 AG-AAATGAAAGAA
1 AGAAAATGAGAGAA
76882280 AAAGAAAAAG
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 10 0.20
42 40 0.80
ACGTcount: A:0.57, C:0.04, G:0.24, T:0.15
Consensus pattern (42 bp):
AGAAAATGAGAGAATCTTGAATGAAATCGAGAAAAGAAACAA
Found at i:76882298 original size:6 final size:6
Alignment explanation
Indices: 76882289--76882320 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
76882279 AAAAGAAAAA
*
76882289 GAGATT GAGAGT GAGAGT GAGAGT GAGAGT GA
1 GAGAGT GAGAGT GAGAGT GAGAGT GAGAGT GA
76882321 AAAAGAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.00, G:0.47, T:0.19
Consensus pattern (6 bp):
GAGAGT
Found at i:76882333 original size:18 final size:18
Alignment explanation
Indices: 76882312--76882381 Score: 50
Period size: 18 Copynumber: 3.9 Consensus size: 18
76882302 AGAGTGAGAG
76882312 TGAGAGTGAAAAAGAAAA
1 TGAGAGTGAAAAAGAAAA
* * **
76882330 TGAGATTGAGATTGAAAA
1 TGAGAGTGAAAAAGAAAA
* * ***
76882348 AGAGAATGAAAAAGAGTT
1 TGAGAGTGAAAAAGAAAA
*
76882366 TGAGAGAGAAAAAGAA
1 TGAGAGTGAAAAAGAA
76882382 TGTGAACAAG
Statistics
Matches: 36, Mismatches: 16, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.56, C:0.00, G:0.29, T:0.16
Consensus pattern (18 bp):
TGAGAGTGAAAAAGAAAA
Found at i:76882333 original size:24 final size:24
Alignment explanation
Indices: 76882306--76882356 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
76882296 AGAGTGAGAG
76882306 TGAGAGTGAGAGTGAAAAAGAAAA
1 TGAGAGTGAGAGTGAAAAAGAAAA
* * *
76882330 TGAGATTGAGATTGAAAAAGAGAA
1 TGAGAGTGAGAGTGAAAAAGAAAA
76882354 TGA
1 TGA
76882357 AAAAGAGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (24 bp):
TGAGAGTGAGAGTGAAAAAGAAAA
Found at i:76882368 original size:24 final size:24
Alignment explanation
Indices: 76882313--76882377 Score: 58
Period size: 24 Copynumber: 2.7 Consensus size: 24
76882303 GAGTGAGAGT
* * **
76882313 GAGAGTGAAAAAGAAAATGAGATT
1 GAGATTGAAAAAGAAAATGAAAAA
*
76882337 GAGATTGAAAAAGAGAATGAAAAA
1 GAGATTGAAAAAGAAAATGAAAAA
* * *
76882361 GAGTTTGAGAGAGAAAA
1 GAGATTGAAAAAGAAAA
76882378 AGAATGTGAA
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.15
Consensus pattern (24 bp):
GAGATTGAAAAAGAAAATGAAAAA
Found at i:76882370 original size:36 final size:36
Alignment explanation
Indices: 76882274--76882371 Score: 97
Period size: 36 Copynumber: 2.7 Consensus size: 36
76882264 CAAAGAAATG
* * *
76882274 AAAGAAAAAGAAAAAGAGATTGAGAGTGAGAGTGAG
1 AAAGAGAATGAAAAAGAGATTGAGAGTGAGAGTGAA
** * * * * *
76882310 AGTGAGAGTGAAAAAGAAAATGAGATTGAGATTGAA
1 AAAGAGAATGAAAAAGAGATTGAGAGTGAGAGTGAA
*
76882346 AAAGAGAATGAAAAAGAGTTTGAGAG
1 AAAGAGAATGAAAAAGAGATTGAGAG
76882372 AGAAAAAGAA
Statistics
Matches: 45, Mismatches: 17, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
36 45 1.00
ACGTcount: A:0.53, C:0.00, G:0.32, T:0.15
Consensus pattern (36 bp):
AAAGAGAATGAAAAAGAGATTGAGAGTGAGAGTGAA
Found at i:76882410 original size:18 final size:19
Alignment explanation
Indices: 76882374--76882412 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
76882364 TTTGAGAGAG
*
76882374 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
76882393 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
76882411 AA
1 AA
76882413 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:76887411 original size:15 final size:16
Alignment explanation
Indices: 76887386--76887417 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
76887376 ACCTACAAAG
76887386 AAATAAAAATATAATT
1 AAATAAAAATATAATT
76887402 AAAT-AAAATATAATT
1 AAATAAAAATATAATT
76887417 A
1 A
76887418 TTCATATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATAAAAATATAATT
Found at i:76887660 original size:21 final size:21
Alignment explanation
Indices: 76887636--76887683 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
76887626 AAAAGAAATG
*
76887636 AGCTGAAACGAGCTAAAATCA
1 AGCTCAAACGAGCTAAAATCA
* *
76887657 AGCTCAAACGAGCTGAAATGA
1 AGCTCAAACGAGCTAAAATCA
76887678 A-CTCAA
1 AGCTCAA
76887684 GTGAGCTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.46, C:0.21, G:0.19, T:0.15
Consensus pattern (21 bp):
AGCTCAAACGAGCTAAAATCA
Found at i:76888792 original size:21 final size:22
Alignment explanation
Indices: 76888756--76888807 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
76888746 TCACAACTCT
76888756 TTTTCTTTTCTCTTTCATTTTC-
1 TTTTC-TTTCTCTTTCATTTTCA
*
76888778 TTTTCTTTCTTTTTCATTTTCA
1 TTTTCTTTCTCTTTCATTTTCA
*
76888800 CTTTCTTT
1 TTTTCTTT
76888808 TTCCACTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.06, C:0.21, G:0.00, T:0.73
Consensus pattern (22 bp):
TTTTCTTTCTCTTTCATTTTCA
Found at i:76893585 original size:30 final size:30
Alignment explanation
Indices: 76893491--76893586 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
76893481 AGCTCACTCC
76893491 TAGCTCATA-TTCAGCTCACG-GCTAAACCT
1 TAGCTCA-ACTTCAGCTCACGAGCTAAACCT
* * * * *
76893520 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
* * *
76893550 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTCAGCTCACGAGCTAAACCT
76893580 TAGCTCA
1 TAGCTCA
76893587 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
28 1 0.02
29 16 0.31
30 35 0.67
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTCAGCTCACGAGCTAAACCT
Found at i:76895676 original size:46 final size:46
Alignment explanation
Indices: 76895626--76895801 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
76895616 TGGTTGAGCA
76895626 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76895672 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
76895717 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76895765 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
76895802 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76895782 original size:93 final size:93
Alignment explanation
Indices: 76895623--76895794 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
76895613 GGATGGTTGA
* *
76895623 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76895688 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
76895716 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
76895781 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
76895795 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76898381 original size:11 final size:10
Alignment explanation
Indices: 76898357--76898401 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
76898347 AAAAGAAATG
76898357 AGCTAAAACA
1 AGCTAAAACA
76898367 AGCTAAAATCA
1 AGCTAAAA-CA
* *
76898378 AGCTCAAACG
1 AGCTAAAACA
*
76898388 AGCTGAAACA
1 AGCTAAAACA
76898398 AGCT
1 AGCT
76898402 CAAGTGAGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 21 0.70
11 9 0.30
ACGTcount: A:0.49, C:0.22, G:0.16, T:0.13
Consensus pattern (10 bp):
AGCTAAAACA
Found at i:76898413 original size:20 final size:20
Alignment explanation
Indices: 76898357--76898404 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
76898347 AAAAGAAATG
* * *
76898357 AGCTAAAACAAGCTAAAATCA
1 AGCTCAAACGAGCTGAAA-CA
76898378 AGCTCAAACGAGCTGAAACA
1 AGCTCAAACGAGCTGAAACA
76898398 AGCTCAA
1 AGCTCAA
76898405 GTGAGCTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.50, C:0.23, G:0.15, T:0.12
Consensus pattern (20 bp):
AGCTCAAACGAGCTGAAACA
Found at i:76901170 original size:24 final size:25
Alignment explanation
Indices: 76901143--76901199 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
76901133 ATGAGTGATA
*
76901143 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
76901167 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
76901191 AAAAAAGAA
1 AAAAAAGAA
76901200 TTTGTTGGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 13 0.46
24 7 0.25
25 8 0.29
ACGTcount: A:0.63, C:0.04, G:0.23, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:76907182 original size:14 final size:14
Alignment explanation
Indices: 76907163--76907191 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
76907153 ATTAACATGC
76907163 TATTTTCAAATTCT
1 TATTTTCAAATTCT
76907177 TATTTTCAAATTCT
1 TATTTTCAAATTCT
76907191 T
1 T
76907192 TCTATTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTTTCAAATTCT
Found at i:76908206 original size:100 final size:102
Alignment explanation
Indices: 76908033--76908308 Score: 359
Period size: 100 Copynumber: 2.7 Consensus size: 102
76908023 CTGGTACGCA
* **
76908033 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAGTTTGGTACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTACACATAGTAGCCTGCACTT
76908098 AGTACTACACACAT-GG-CCTAA-ACATTTGATACACG
66 AGTACTACACACATGGGACCTAATA-ATTTGATACACG
*
76908133 TAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATTTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTACACATAGTAGCCTGCACTT
* *
76908198 AGTACT--ACACATGGGACCTAATAATTTGGTACATG
66 AGTACTACACACATGGGACCTAATAATTTGATACACG
* * **
76908233 TAGTAGCCTGCACTTAGTACTACACACT-TGACCTAAAACCATCTT-AAACACATAGTAGCCTGC
1 TAGTAGCCTGCACTTAGTACTACACA-TGCGACCT--AACAAT-TTGGTACACATAGTAGCCTGC
*
76908296 ACATAGTACTACA
62 ACTTAGTACTACA
76908309 TATGTGTTCT
Statistics
Matches: 155, Mismatches: 12, Indels: 14
0.86 0.07 0.08
Matches are distributed among these distances:
98 6 0.04
99 2 0.01
100 112 0.72
101 2 0.01
102 30 0.19
103 2 0.01
104 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (102 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATTTGGTACACATAGTAGCCTGCACTT
AGTACTACACACATGGGACCTAATAATTTGATACACG
Found at i:76908268 original size:50 final size:50
Alignment explanation
Indices: 76908024--76908258 Score: 332
Period size: 50 Copynumber: 4.7 Consensus size: 50
76908014 CAAAGCTCTC
* * *
76908024 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAGTT
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATT
*
76908074 TGGTACATGTAGTAGCCTGCACTTAGTACTACACACATG-G-CCTAA-ACATT
1 TGGTACACGTAGTAGCCTGCACTTAGTACT--ACACATGCGACCTAACA-ATT
* *
76908124 TGATACACGTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAATT
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATT
* * *
76908174 TGGTACACATAGTAGCCTGCACTTAGTACTACACATGGGACCTAATAATT
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATT
*
76908224 TGGTACATGTAGTAGCCTGCACTTAGTACTACACA
1 TGGTACACGTAGTAGCCTGCACTTAGTACTACACA
76908259 CTTGACCTAA
Statistics
Matches: 165, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
48 7 0.04
49 2 0.01
50 147 0.89
51 2 0.01
52 7 0.04
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (50 bp):
TGGTACACGTAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATT
Found at i:76911796 original size:32 final size:31
Alignment explanation
Indices: 76911759--76911819 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 31
76911749 GATTACTCAC
*
76911759 TTCACTCG-TTTCTTTTATAGACTCTCTTTCTT
1 TTCACTCGATTTCTTTCA-AG-CTCTCTTTCTT
*
76911791 TTCACTTGATTTCTTTCAAGCTCTCTTTC
1 TTCACTCGATTTCTTTCAAGCTCTCTTTC
76911820 AATTTCTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
31 9 0.35
32 9 0.35
33 8 0.31
ACGTcount: A:0.13, C:0.26, G:0.07, T:0.54
Consensus pattern (31 bp):
TTCACTCGATTTCTTTCAAGCTCTCTTTCTT
Found at i:76911843 original size:6 final size:6
Alignment explanation
Indices: 76911834--76911933 Score: 55
Period size: 6 Copynumber: 16.8 Consensus size: 6
76911824 TCTTTTTTCG
* * * **
76911834 CTTTTT C-TTTT CAATTTT CTTTTCTT CATTTT CTTTTT CTCTCA CTTTTT
1 CTTTTT CTTTTT C-TTTTT C-TTT-TT CTTTTT CTTTTT CTTTTT CTTTTT
* * ** *
76911884 -TATTT C-TTTT CTTTTG CAATTT CTTTTT C-TTTT CTTTTT CGTTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT
76911929 CTTTT
1 CTTTT
76911934 GTTTTCTTTC
Statistics
Matches: 68, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
5 18 0.26
6 38 0.56
7 9 0.13
8 3 0.04
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (6 bp):
CTTTTT
Found at i:76911905 original size:17 final size:18
Alignment explanation
Indices: 76911885--76911934 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
76911875 TCACTTTTTT
76911885 ATTTC-TTTTCTTTTGCA
1 ATTTCGTTTTCTTTTGCA
* *
76911902 ATTTCTTTTTCTTTT-CT
1 ATTTCGTTTTCTTTTGCA
*
76911919 TTTTCGTTTTCTTTTG
1 ATTTCGTTTTCTTTTG
76911935 TTTTCTTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 19 0.68
18 9 0.32
ACGTcount: A:0.06, C:0.16, G:0.06, T:0.72
Consensus pattern (18 bp):
ATTTCGTTTTCTTTTGCA
Found at i:76911912 original size:23 final size:22
Alignment explanation
Indices: 76911886--76911953 Score: 77
Period size: 23 Copynumber: 3.1 Consensus size: 22
76911876 CACTTTTTTA
76911886 TTTCTTTTCTTTTGCAATTTCTT
1 TTTCTTTTCTTTT-CAATTTCTT
**
76911909 TTTCTTTTCTTTTTCGTTTTC-T
1 TTTCTTTTC-TTTTCAATTTCTT
*
76911931 TTTGTTTTC-TTTCAATTTCTT
1 TTTCTTTTCTTTTCAATTTCTT
76911952 TT
1 TT
76911954 CAATCTCTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 8 0.21
21 3 0.08
22 9 0.24
23 14 0.37
24 4 0.11
ACGTcount: A:0.06, C:0.16, G:0.04, T:0.74
Consensus pattern (22 bp):
TTTCTTTTCTTTTCAATTTCTT
Found at i:76911938 original size:17 final size:17
Alignment explanation
Indices: 76911903--76911938 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
76911893 TCTTTTGCAA
*
76911903 TTTCTTTTTCTTTTCTT
1 TTTCGTTTTCTTTTCTT
*
76911920 TTTCGTTTTCTTTTGTT
1 TTTCGTTTTCTTTTCTT
76911937 TT
1 TT
76911939 CTTTCAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.06, T:0.81
Consensus pattern (17 bp):
TTTCGTTTTCTTTTCTT
Found at i:76911954 original size:5 final size:5
Alignment explanation
Indices: 76911836--76911942 Score: 56
Period size: 5 Copynumber: 19.6 Consensus size: 5
76911826 TTTTTTCGCT
** *
76911836 TTTTC TTTTC AATTTTC TTTTC --TTC ATTTTC TTTTTC TCTCAC TTTTT
1 TTTTC TTTTC --TTTTC TTTTC TTTTC -TTTTC -TTTTC T-TTTC TTTTC
* *
76911884 TATTTC TTTTC TTTTGC AATTTC TTTTTC TTTTC TTTTTC GTTTTC TTTTG
1 T-TTTC TTTTC TTTT-C -TTTTC -TTTTC TTTTC -TTTTC -TTTTC TTTTC
76911935 TTTTC TTT
1 TTTTC TTT
76911943 CAATTTCTTT
Statistics
Matches: 79, Mismatches: 13, Indels: 20
0.71 0.12 0.18
Matches are distributed among these distances:
3 3 0.04
5 37 0.47
6 31 0.39
7 8 0.10
ACGTcount: A:0.07, C:0.18, G:0.03, T:0.73
Consensus pattern (5 bp):
TTTTC
Found at i:76911963 original size:43 final size:45
Alignment explanation
Indices: 76911890--76911973 Score: 102
Period size: 43 Copynumber: 1.9 Consensus size: 45
76911880 TTTTTATTTC
* * * *
76911890 TTTTCTTTTGCAATTTCTTTTTCTTTTCTTTTTCGTTTTCTTTTG
1 TTTTCTTTTGCAATTTCTTTTTCATCTCTTTCTCCTTTTCTTTTG
76911935 TTTTC-TTT-CAATTTC-TTTTCAATCTCTTTCTCCTTTTCT
1 TTTTCTTTTGCAATTTCTTTTTC-ATCTCTTTCTCCTTTTCT
76911974 CGCTCAATGG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 5 0.15
43 21 0.62
44 3 0.09
45 5 0.15
ACGTcount: A:0.07, C:0.20, G:0.04, T:0.69
Consensus pattern (45 bp):
TTTTCTTTTGCAATTTCTTTTTCATCTCTTTCTCCTTTTCTTTTG
Found at i:76913025 original size:35 final size:35
Alignment explanation
Indices: 76912986--76913057 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
76912976 TTTTAACTCG
* *
76912986 ATTTTTTTTTGTC-ACTTT-TTTTTCTTTTTTTTTAA
1 ATTTTTTTTT-TCGAATTTCTTCTTC-TTTTTTTTAA
76913021 ATTTTTTTTTTCGAATTTCTTCTTCTTTTTTTTAA
1 ATTTTTTTTTTCGAATTTCTTCTTCTTTTTTTTAA
76913056 AT
1 AT
76913058 CCAATACAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 2 0.06
35 26 0.79
36 5 0.15
ACGTcount: A:0.14, C:0.10, G:0.03, T:0.74
Consensus pattern (35 bp):
ATTTTTTTTTTCGAATTTCTTCTTCTTTTTTTTAA
Found at i:76917757 original size:20 final size:22
Alignment explanation
Indices: 76917734--76917773 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
76917724 ATAACCTTTA
76917734 ATAAAACAT-TA-ATAAATGAC
1 ATAAAACATGTACATAAATGAC
*
76917754 ATAAACCATGTACATAAATG
1 ATAAAACATGTACATAAATG
76917774 TCCATTAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 2 0.12
22 7 0.41
ACGTcount: A:0.55, C:0.12, G:0.07, T:0.25
Consensus pattern (22 bp):
ATAAAACATGTACATAAATGAC
Found at i:76920001 original size:22 final size:21
Alignment explanation
Indices: 76919976--76920039 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 21
76919966 GTAAATACGT
76919976 TTGGCACATAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
76919998 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
76920020 TTGGCACAAAGCCATAATCA
1 TTGGCACAAA-CCATAATCA
76920040 AAATAATTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:76920244 original size:40 final size:41
Alignment explanation
Indices: 76920182--76920303 Score: 183
Period size: 40 Copynumber: 3.0 Consensus size: 41
76920172 TAAAAGCCAC
*
76920182 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* *
76920223 CGGTGGAT-CACGATCGTCAAGCAACCATGCGATTCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* * *
76920263 CGGTGGATCCACGGTCGTCAAACAACCATGTGATCCCCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
76920304 TTCTTCCTCC
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 37 0.51
41 35 0.49
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:76920571 original size:27 final size:27
Alignment explanation
Indices: 76920541--76920605 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
76920531 TTTCACCCTA
* *
76920541 CAAGGGTGTTTTTGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAAATCTACAAAC
* * *
76920568 CAAGGGTATTTTGGTAATTTTCCAAAC
1 CAAGGGTATTTTGGTAAATCTACAAAC
76920595 CAAGGGTATTT
1 CAAGGGTATTT
76920606 CAATAATTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAAATCTACAAAC
Found at i:76920612 original size:27 final size:27
Alignment explanation
Indices: 76920561--76920828 Score: 218
Period size: 27 Copynumber: 10.0 Consensus size: 27
76920551 TTTGTAAATC
* *
76920561 TACAAACCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* * **
76920588 TCCAAACCAAGGGTATTTCAATAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* * *
76920615 TCCAAATCAGGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
** * *
76920642 TACAGGTCGAGGGTATTTCGATAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
** * *
76920669 TACAGGTCGAGGGTATTTCAGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
* *
76920696 CACAAATC-AGGTGTATTTTGGTAATTT
1 TACAAATCAAGG-GTATTTCGGTAATTT
*
76920723 TACAAAT-AGAGGGTATTTTGGTAATTT
1 TACAAATCA-AGGGTATTTCGGTAATTT
* *
76920750 TACTAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
** * * *
76920777 TGTAAACCAACGGTA-TTCAGTAATTT
1 TACAAATCAAGGGTATTTCGGTAATTT
** * *
76920803 TGTAAACCAAGGGTATTTCAGTAATT
1 TACAAATCAAGGGTATTTCGGTAATT
76920829 CTACCCTACA
Statistics
Matches: 203, Mismatches: 33, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
26 26 0.13
27 173 0.85
28 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
TACAAATCAAGGGTATTTCGGTAATTT
Found at i:76920669 original size:81 final size:81
Alignment explanation
Indices: 76920570--76920767 Score: 263
Period size: 81 Copynumber: 2.4 Consensus size: 81
76920560 CTACAAACCA
* *
76920570 AGGGTATTTTGGTAATTTTCCAAACCAAGGGTATTTCAATAATTTTC-CAAATCAGGGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAATAA-TTTCACAAATCAGGGGTATTTT
** *
76920634 GGTAATTTTACAGGTCG
65 GGTAATTTTACAAATAG
* * ** * * *
76920651 AGGGTATTTCGATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGTGTATTTTG
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCACAAATCAGGGGTATTTTG
76920716 GTAATTTTACAAATAG
66 GTAATTTTACAAATAG
*
76920732 AGGGTATTTTGGTAATTTTACTAATCAAGGGTATTT
1 AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTT
76920768 TGGTAATTTT
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
80 4 0.04
81 94 0.96
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.39
Consensus pattern (81 bp):
AGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCAATAATTTCACAAATCAGGGGTATTTTG
GTAATTTTACAAATAG
Found at i:76920804 original size:26 final size:27
Alignment explanation
Indices: 76920761--76920828 Score: 102
Period size: 26 Copynumber: 2.6 Consensus size: 27
76920751 ACTAATCAAG
**
76920761 GGTATTTTGGTAATTTTGTAAACCAAC
1 GGTATTTCAGTAATTTTGTAAACCAAC
*
76920788 GGTA-TTCAGTAATTTTGTAAACCAAG
1 GGTATTTCAGTAATTTTGTAAACCAAC
76920814 GGTATTTCAGTAATT
1 GGTATTTCAGTAATT
76920829 CTACCCTACA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 23 0.62
27 14 0.38
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTGTAAACCAAC
Found at i:76922571 original size:40 final size:40
Alignment explanation
Indices: 76922527--76922613 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 40
76922517 GGAGAAAACT
*
76922527 AAAACTGCCCTGAATTATGGATGAAATTGCCAGAATGGTG
1 AAAACCGCCCTGAATTATGGATGAAATTGCCAGAATGGTG
**
76922567 AAAACCGGTCTGAATTATGGATGAAATTGCCAGAATGGTG
1 AAAACCGCCCTGAATTATGGATGAAATTGCCAGAATGGTG
76922607 AAAACCG
1 AAAACCG
76922614 GAATTGTAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (40 bp):
AAAACCGCCCTGAATTATGGATGAAATTGCCAGAATGGTG
Found at i:76922614 original size:40 final size:40
Alignment explanation
Indices: 76922536--76922614 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
76922526 TAAAACTGCC
76922536 CTGAATTATGGATGAAATTGCCAGAATGGTGAAAACCGGT
1 CTGAATTATGGATGAAATTGCCAGAATGGTGAAAACCGGT
76922576 CTGAATTATGGATGAAATTGCCAGAATGGTGAAAACCGG
1 CTGAATTATGGATGAAATTGCCAGAATGGTGAAAACCGG
76922615 AATTGTAAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (40 bp):
CTGAATTATGGATGAAATTGCCAGAATGGTGAAAACCGGT
Found at i:76929911 original size:47 final size:47
Alignment explanation
Indices: 76929848--76930432 Score: 981
Period size: 47 Copynumber: 12.4 Consensus size: 47
76929838 CAGCCAAGAC
*
76929848 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
76929895 AGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76929942 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76929989 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76930036 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76930085 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76930132 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76930179 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76930226 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
76930273 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76930320 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
76930367 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
76930414 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
76930433 TCCCGAAGGG
Statistics
Matches: 513, Mismatches: 23, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 466 0.91
49 47 0.09
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:76930607 original size:37 final size:37
Alignment explanation
Indices: 76930551--76930629 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
76930541 CCGAGCTCTA
* *
76930551 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
76930588 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
76930625 AAGAC
1 AAGAC
76930630 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:76932569 original size:29 final size:29
Alignment explanation
Indices: 76932534--76932607 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
76932524 GTTGTGAGAT
* *
76932534 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
76932563 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
76932592 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
76932608 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:76933040 original size:40 final size:40
Alignment explanation
Indices: 76932921--76933112 Score: 176
Period size: 40 Copynumber: 4.8 Consensus size: 40
76932911 AATGATGTCC
** *
76932921 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCG
* ** * * *
76932961 GACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATATCCG
*
76933001 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* *
76933041 GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCG
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
* * * *
76933081 TGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
76933113 CGTGTATTCG
Statistics
Matches: 126, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 106 0.84
41 19 0.15
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCG
Found at i:76933054 original size:80 final size:81
Alignment explanation
Indices: 76932921--76933113 Score: 214
Period size: 80 Copynumber: 2.4 Consensus size: 81
76932911 AATGATGTCC
** *
76932921 GGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCATTGG
1 GGCTAAGTCCCGAAGAGCATTCATGCT-AGTGACCATATCCGGACTAAGATCCGAAGAGCATTCG
*
76932983 TGCGAGTTACTAAATCCG
65 TGCGAGTGA-TAAATCCG
** * *
76933001 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTATCCGGGCTAAGTTCCGAAGAGCATTCGT
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCATTCGT
* *
76933065 GCTAGTGATATATCCG
66 GCGAGTGATAAATCCG
* * * *
76933081 TGCTAAATCCCGAAGAGCAATCATGCTGGTGAC
1 GGCTAAGTCCCGAAGAGCATTCATGCTAGTGAC
76933114 GTGTATTCGG
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
80 69 0.73
81 20 0.21
82 6 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGAGCATTCATGCTAGTGACCATATCCGGACTAAGATCCGAAGAGCATTCGT
GCGAGTGATAAATCCG
Found at i:76936531 original size:47 final size:47
Alignment explanation
Indices: 76936470--76937002 Score: 869
Period size: 47 Copynumber: 11.4 Consensus size: 47
76936460 CAGCCAAGAC
*
76936470 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76936517 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTG-A
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76936563 AGTGTATATATGTGATAA-G-CTAAT-G-CGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76936606 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76936653 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76936702 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76936749 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
76936796 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
76936843 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
76936890 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * *
76936937 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* *
76936984 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
76937003 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 18, Indels: 14
0.94 0.04 0.03
Matches are distributed among these distances:
42 16 0.03
43 20 0.04
44 6 0.01
45 6 0.01
46 19 0.04
47 348 0.75
49 46 0.10
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:76939874 original size:23 final size:22
Alignment explanation
Indices: 76939823--76939874 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
76939813 CCTCGTCTTT
*
76939823 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
76939845 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
76939868 TTCTTTT
1 TTCTTTT
76939875 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:76944330 original size:7 final size:7
Alignment explanation
Indices: 76944312--76944342 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
76944302 GGGGAAAATG
76944312 GAAGGGA
1 GAAGGGA
76944319 GGAAGGGA
1 -GAAGGGA
76944327 GAAGGGA
1 GAAGGGA
76944334 GAAGGGA
1 GAAGGGA
76944341 GA
1 GA
76944343 TATGATAGGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (7 bp):
GAAGGGA
Found at i:76946681 original size:21 final size:22
Alignment explanation
Indices: 76946642--76946694 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
76946632 AATCATGTGA
*
76946642 AAAAGAAAAAGAGTGTGAA-AG
1 AAAAGAAAAAGACTGTGAAGAG
76946663 AAAAGAAAAAGAACT-TGAATGAG
1 AAAAGAAAAAG-ACTGTGAA-GAG
76946686 AAAAGAAAA
1 AAAAGAAAA
76946695 TTGAAAAAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 15 0.54
22 2 0.07
23 11 0.39
ACGTcount: A:0.66, C:0.02, G:0.23, T:0.09
Consensus pattern (22 bp):
AAAAGAAAAAGACTGTGAAGAG
Found at i:76950184 original size:20 final size:20
Alignment explanation
Indices: 76950144--76950204 Score: 54
Period size: 20 Copynumber: 3.0 Consensus size: 20
76950134 ACCAATAAAA
76950144 TAAA-TGAGC-TGAATTGTAGC
1 TAAATTGAGCTTG-ATTG-AGC
76950164 TAAATTGAGCTTGATTGAGC
1 TAAATTGAGCTTGATTGAGC
* * * *
76950184 TGACTTGAGCTCGAGTGAGC
1 TAAATTGAGCTTGATTGAGC
76950204 T
1 T
76950205 GGAAACGAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
20 24 0.69
21 9 0.26
22 2 0.06
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (20 bp):
TAAATTGAGCTTGATTGAGC
Found at i:76950205 original size:20 final size:20
Alignment explanation
Indices: 76950168--76950205 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
76950158 TGTAGCTAAA
* *
76950168 TTGAGCTTGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
76950188 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
76950206 GAAACGAGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:76953018 original size:13 final size:13
Alignment explanation
Indices: 76953000--76953050 Score: 84
Period size: 13 Copynumber: 3.8 Consensus size: 13
76952990 CGTATGCAAT
76953000 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
76953013 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
76953026 TTTTTTTTTTCGAA
1 TTTTTTTTTTC-AA
76953040 CTTTTTTTTTT
1 -TTTTTTTTTT
76953051 TACGCACCTA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 24 0.67
14 2 0.06
15 10 0.28
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:76954697 original size:10 final size:10
Alignment explanation
Indices: 76954684--76954721 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
76954674 TTGTAGCTAA
76954684 ATTGAGCTCG
1 ATTGAGCTCG
76954694 ATTGAGCT-G
1 ATTGAGCTCG
76954703 ACTTGAGCTCG
1 A-TTGAGCTCG
*
76954714 AGTGAGCT
1 ATTGAGCT
76954722 GGAAACGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (10 bp):
ATTGAGCTCG
Found at i:76954701 original size:20 final size:20
Alignment explanation
Indices: 76954661--76954721 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
76954651 ACCAATAAAA
76954661 TAAA-TGAGCT-GAATTGTAGC
1 TAAATTGAGCTCG-ATTG-AGC
76954681 TAAATTGAGCTCGATTGAGC
1 TAAATTGAGCTCGATTGAGC
* * *
76954701 TGACTTGAGCTCGAGTGAGC
1 TAAATTGAGCTCGATTGAGC
76954721 T
1 T
76954722 GGAAACGAGC
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 25 0.69
21 10 0.28
22 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (20 bp):
TAAATTGAGCTCGATTGAGC
Found at i:76954722 original size:20 final size:20
Alignment explanation
Indices: 76954685--76954722 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
76954675 TGTAGCTAAA
*
76954685 TTGAGCTCGATTGAGCTGAC
1 TTGAGCTCGAGTGAGCTGAC
76954705 TTGAGCTCGAGTGAGCTG
1 TTGAGCTCGAGTGAGCTG
76954723 GAAACGAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.34, T:0.29
Consensus pattern (20 bp):
TTGAGCTCGAGTGAGCTGAC
Found at i:76957527 original size:14 final size:14
Alignment explanation
Indices: 76957508--76957538 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
76957498 CTATTTGAAC
76957508 CTTTCTTAACCTTT
1 CTTTCTTAACCTTT
*
76957522 CTTTCTTAGCCTTT
1 CTTTCTTAACCTTT
76957536 CTT
1 CTT
76957539 CAACTATCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.29, G:0.03, T:0.58
Consensus pattern (14 bp):
CTTTCTTAACCTTT
Found at i:76958219 original size:17 final size:18
Alignment explanation
Indices: 76958177--76958227 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
76958167 ATTGTTTGTG
76958177 TTTTGTTGTTTTTTTTAAC
1 TTTTGTT-TTTTTTTTAAC
*
76958196 -TTGGTTTTTTTTTT-AC
1 TTTTGTTTTTTTTTTAAC
76958212 TTTTGTTTGTTTTTTT
1 TTTTGTTT-TTTTTTT
76958228 GGTATTGTAG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 2 0.07
17 14 0.50
18 12 0.43
ACGTcount: A:0.06, C:0.04, G:0.12, T:0.78
Consensus pattern (18 bp):
TTTTGTTTTTTTTTTAAC
Found at i:76959307 original size:10 final size:10
Alignment explanation
Indices: 76959294--76959344 Score: 66
Period size: 10 Copynumber: 5.0 Consensus size: 10
76959284 AGCTCACTTG
76959294 AGCTCGTTTC
1 AGCTCGTTTC
*
76959304 AGCTCGTTTG
1 AGCTCGTTTC
*
76959314 AGCTCGATTTT
1 AGCTCG-TTTC
76959325 AGCTCGTTTC
1 AGCTCGTTTC
*
76959335 AGCTCATTTC
1 AGCTCGTTTC
76959345 TTTTCCTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
10 27 0.75
11 9 0.25
ACGTcount: A:0.14, C:0.25, G:0.20, T:0.41
Consensus pattern (10 bp):
AGCTCGTTTC
Found at i:76959330 original size:21 final size:21
Alignment explanation
Indices: 76959282--76959344 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 21
76959272 CCAGCTCCAA
**
76959282 TCAGCTCACTTGAGCTCG-TT
1 TCAGCTCGTTTGAGCTCGATT
76959302 TCAGCTCGTTTGAGCTCGATT
1 TCAGCTCGTTTGAGCTCGATT
* *
76959323 TTAGCTCGTTTCAGCTC-ATT
1 TCAGCTCGTTTGAGCTCGATT
76959343 TC
1 TC
76959345 TTTTCCTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 20 0.54
21 17 0.46
ACGTcount: A:0.14, C:0.27, G:0.19, T:0.40
Consensus pattern (21 bp):
TCAGCTCGTTTGAGCTCGATT
Found at i:76963402 original size:15 final size:15
Alignment explanation
Indices: 76963370--76963403 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
76963360 GTTCAACGAA
*
76963370 GAGGCCAACGCAACC
1 GAGGCCAACGAAACC
*
76963385 GAGGCCAACGAAATC
1 GAGGCCAACGAAACC
76963400 GAGG
1 GAGG
76963404 GAGGTTCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.35, C:0.29, G:0.32, T:0.03
Consensus pattern (15 bp):
GAGGCCAACGAAACC
Found at i:76975815 original size:30 final size:30
Alignment explanation
Indices: 76975781--76975877 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
76975771 TAAACTAAAA
76975781 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
76975811 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
76975841 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
76975871 TGAGCTA
1 TGAGCTA
76975878 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 14, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
29 2 0.04
30 42 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:76977694 original size:30 final size:30
Alignment explanation
Indices: 76977660--76977756 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
76977650 TAAACTAAAA
*
76977660 TGAGCTAAGTTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
* * * * * * *
76977690 TGAGCTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
76977720 TGAGCTAAGGTTTAGCTCGTGAGCTAAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
76977749 ATGAGCTA
1 -TGAGCTA
76977757 GGAGTGAGCT
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTAAAGT
Done.