Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 24 of 295
Found at i:7188603 original size:28 final size:28
Alignment explanation
Indices: 7188544--7188604 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
7188534 TTTTCCAATT
* * *
7188544 ATTTAAATATTATCATTATTTTTAAATT
1 ATTTAAATATTATCATAATTATTAAATA
*
7188572 ATTTAAATATTATCATAATTATTGAATA
1 ATTTAAATATTATCATAATTATTAAATA
7188600 ATTTA
1 ATTTA
7188605 CTTAATTACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (28 bp):
ATTTAAATATTATCATAATTATTAAATA
Found at i:7189788 original size:18 final size:18
Alignment explanation
Indices: 7189757--7189791 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7189747 TTGTTGGCCA
7189757 TATGAACAAATGCAATGG
1 TATGAACAAATGCAATGG
* *
7189775 TATGACCAATTGCAATG
1 TATGAACAAATGCAATG
7189792 TGTAAGGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (18 bp):
TATGAACAAATGCAATGG
Found at i:7205266 original size:14 final size:14
Alignment explanation
Indices: 7205225--7205257 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
7205215 ACTTTTTGAT
7205225 TAATGGAAACATAA
1 TAATGGAAACATAA
*
7205239 TAATGGAGACATAA
1 TAATGGAAACATAA
7205253 TAATG
1 TAATG
7205258 TAAATATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.52, C:0.06, G:0.18, T:0.24
Consensus pattern (14 bp):
TAATGGAAACATAA
Found at i:7212069 original size:2 final size:2
Alignment explanation
Indices: 7212062--7212096 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7212052 TATCCCTATA
7212062 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
7212097 AAGCACAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:7217650 original size:9 final size:9
Alignment explanation
Indices: 7217624--7217672 Score: 53
Period size: 9 Copynumber: 5.4 Consensus size: 9
7217614 ATATTTTGTG
*
7217624 ATGATAATC
1 ATGATCATC
* *
7217633 ATCACCATC
1 ATGATCATC
7217642 ATGATCATC
1 ATGATCATC
*
7217651 ATGATCACC
1 ATGATCATC
*
7217660 ATGATCATG
1 ATGATCATC
7217669 ATGA
1 ATGA
7217673 AGGTGGTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (9 bp):
ATGATCATC
Found at i:7230107 original size:20 final size:19
Alignment explanation
Indices: 7230064--7230155 Score: 91
Period size: 19 Copynumber: 4.8 Consensus size: 19
7230054 TAAGTTTTAA
* *
7230064 TAAAAATATTTAAAATTTAG
1 TAAAAAAATATAAAATTT-G
7230084 -AAAAAAATATAAAATTTG
1 TAAAAAAATATAAAATTTG
*
7230102 TAAAAAAATTATAAAA-ATG
1 TAAAAAAA-TATAAAATTTG
*
7230121 TAAAGAAATATAAAATTCAT-
1 TAAAAAAATATAAAATT--TG
7230141 TAAAAAAATATAAAA
1 TAAAAAAATATAAAA
7230156 ATTATCGTAC
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
18 8 0.13
19 31 0.51
20 21 0.34
21 1 0.02
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.29
Consensus pattern (19 bp):
TAAAAAAATATAAAATTTG
Found at i:7230373 original size:28 final size:28
Alignment explanation
Indices: 7230342--7230408 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
7230332 TATTTTCTAA
*
7230342 TTATAAATTATAAATATTTTTTAT-ATTT
1 TTATAAATT-TAAATAATTTTTATAATTT
*
7230370 TTATTAAAATTAAATAATTTTTATAATTT
1 TTA-TAAATTTAAATAATTTTTATAATTT
*
7230399 TTATTAATTT
1 TTATAAATTT
7230409 TTTTATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (28 bp):
TTATAAATTTAAATAATTTTTATAATTT
Found at i:7230406 original size:10 final size:10
Alignment explanation
Indices: 7230384--7230420 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
7230374 TAAAATTAAA
7230384 TAATTTTTA-
1 TAATTTTTAT
7230393 TAATTTTTAT
1 TAATTTTTAT
7230403 TAATTTTT-T
1 TAATTTTTAT
7230412 TATATTTTT
1 TA-ATTTTT
7230421 TGCCACATGC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 12 0.46
10 14 0.54
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (10 bp):
TAATTTTTAT
Found at i:7230714 original size:91 final size:91
Alignment explanation
Indices: 7230551--7230751 Score: 230
Period size: 91 Copynumber: 2.2 Consensus size: 91
7230541 AATTGCTTTT
* * * *
7230551 TTTTTTTGAAAAAGTTTGA-GGTCTTTTTAATGCATTTTAAAAGTTTAAGTACCAAATTGAGTGC
1 TTTTTTTGAAAAAGTTTAAGGGTCTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTGC
* *
7230615 AAACAAAAA-GTAGGG-GCTTAATTGC
66 AAAAAAAAAGGTAGGGAG-TTAATTAC
* * *
7230640 TTTTTTTGAAAAAGTTTAAGGGTATTTTTTGATGCATTGTGAAAGTTGAAGTACC-AAGTGAGTG
1 TTTTTTTGAAAAAGTTTAAGGGT-CTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTG
*
7230704 CAAAAAAAAAAGGTTGGGAGTTAATTAC
65 C-AAAAAAAAAGGTAGGGAGTTAATTAC
* **
7230732 TTTATTAAAAAAAGTTTAAG
1 TTTTTTTGAAAAAGTTTAAG
7230752 AACTTTTTAC
Statistics
Matches: 94, Mismatches: 13, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
89 18 0.19
90 12 0.13
91 34 0.36
92 29 0.31
93 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.36
Consensus pattern (91 bp):
TTTTTTTGAAAAAGTTTAAGGGTCTTTTTAATGCATTGTAAAAGTTGAAGTACCAAAGTGAGTGC
AAAAAAAAAGGTAGGGAGTTAATTAC
Found at i:7240285 original size:3 final size:3
Alignment explanation
Indices: 7240277--7240303 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7240267 AATTACATAC
7240277 GAT GAT GAT GAT GAT GAT GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT
7240304 AATAATAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
GAT
Found at i:7252895 original size:22 final size:23
Alignment explanation
Indices: 7252870--7252915 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7252860 CAACCAAATC
7252870 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
7252892 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
7252915 A
1 A
7252916 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:7252921 original size:23 final size:23
Alignment explanation
Indices: 7252877--7252921 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7252867 ATCAATTCAA
*
7252877 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
7252900 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
7252922 CACATTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:7260423 original size:5 final size:5
Alignment explanation
Indices: 7260415--7260440 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7260405 GAAATGAAAT
7260415 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
7260441 ATATTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:7261614 original size:36 final size:36
Alignment explanation
Indices: 7261574--7261647 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
7261564 AATATAGAAT
7261574 GACAATTATAATGAATTTTTTCTAATAAGAACCATC
1 GACAATTATAATGAATTTTTTCTAATAAGAACCATC
7261610 GACAATTATAATGAATTTTTTCTAATAAGAACCATC
1 GACAATTATAATGAATTTTTTCTAATAAGAACCATC
7261646 GA
1 GA
7261648 GAACAAATGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.35
Consensus pattern (36 bp):
GACAATTATAATGAATTTTTTCTAATAAGAACCATC
Found at i:7265009 original size:11 final size:11
Alignment explanation
Indices: 7264993--7265035 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
7264983 TAGAATATAC
7264993 CCCATACCTTG
1 CCCATACCTTG
*
7265004 CCCATACCTTT
1 CCCATACCTTG
*
7265015 CCCATACC-TA
1 CCCATACCTTG
7265025 CCCATACCTTG
1 CCCATACCTTG
7265036 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:7265030 original size:21 final size:22
Alignment explanation
Indices: 7264993--7265034 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
7264983 TAGAATATAC
*
7264993 CCCATACCTTGCCCATACCTTT
1 CCCATACCTTACCCATACCTTT
7265015 CCCATACC-TACCCATACCTT
1 CCCATACCTTACCCATACCTT
7265035 GGAAAGGTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.21, C:0.48, G:0.02, T:0.29
Consensus pattern (22 bp):
CCCATACCTTACCCATACCTTT
Found at i:7265596 original size:18 final size:18
Alignment explanation
Indices: 7265571--7265645 Score: 80
Period size: 18 Copynumber: 4.2 Consensus size: 18
7265561 ACAGTTTACG
*
7265571 GTACTATTAACGTATACA
1 GTACTATTCACGTATACA
* * *
7265589 GCACTATTCACATATA-T
1 GTACTATTCACGTATACA
*
7265606 GATACTATTTACGTATACA
1 G-TACTATTCACGTATACA
*
7265625 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
7265643 GTA
1 GTA
7265646 GTTGGGATTG
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
17 1 0.02
18 43 0.96
19 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:7265620 original size:36 final size:36
Alignment explanation
Indices: 7265572--7265640 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
7265562 CAGTTTACGG
7265572 TACTATTAACGTATACAGCACTATTCACATATATGA
1 TACTATTAACGTATACAGCACTATTCACATATATGA
* * * *
7265608 TACTATTTACGTATACAGTACTGTTCACGTATA
1 TACTATTAACGTATACAGCACTATTCACATATA
7265641 CAGTAGTTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.35, C:0.19, G:0.10, T:0.36
Consensus pattern (36 bp):
TACTATTAACGTATACAGCACTATTCACATATATGA
Found at i:7267666 original size:26 final size:26
Alignment explanation
Indices: 7267637--7267688 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7267627 AAGAATCTAA
7267637 GTTAGACCCAAGAGCAAAGAAAGCAT
1 GTTAGACCCAAGAGCAAAGAAAGCAT
7267663 GTTAGACCCAAGAGCAAAGAAAGCAT
1 GTTAGACCCAAGAGCAAAGAAAGCAT
7267689 TATTCTTGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.19, G:0.23, T:0.12
Consensus pattern (26 bp):
GTTAGACCCAAGAGCAAAGAAAGCAT
Found at i:7269743 original size:11 final size:11
Alignment explanation
Indices: 7269714--7269755 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7269704 TAGAATATAC
*
7269714 CCCATACATTT
1 CCCATACCTTT
7269725 CCCATACCTTT
1 CCCATACCTTT
* *
7269736 CCTATACC-TA
1 CCCATACCTTT
7269746 CCCATACCTT
1 CCCATACCTT
7269756 GGAAAGGTCA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.24, C:0.43, G:0.00, T:0.33
Consensus pattern (11 bp):
CCCATACCTTT
Found at i:7275878 original size:21 final size:21
Alignment explanation
Indices: 7275852--7275892 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7275842 AGACGAGCAA
* *
7275852 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
7275873 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
7275893 TTGAGTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:7277831 original size:16 final size:16
Alignment explanation
Indices: 7277798--7277831 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7277788 GGAGATTGTT
* *
7277798 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
7277814 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
7277830 AA
1 AA
7277832 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:7281996 original size:11 final size:11
Alignment explanation
Indices: 7281982--7282056 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 11
7281972 TATATTAAAG
7281982 ATATACATAAT
1 ATATACATAAT
7281993 ATATACATAA-
1 ATATACATAAT
* *
7282003 A-AAATATAAT
1 ATATACATAAT
*
7282013 AT-TAAATATAT
1 ATATACATA-AT
* *
7282024 ATATAAATGAT
1 ATATACATAAT
*
7282035 ATATATGA-AAT
1 ATATA-CATAAT
7282046 ATATACATAAT
1 ATATACATAAT
7282057 GTAGTTATTT
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
9 6 0.12
10 7 0.14
11 31 0.62
12 6 0.12
ACGTcount: A:0.57, C:0.04, G:0.03, T:0.36
Consensus pattern (11 bp):
ATATACATAAT
Found at i:7282243 original size:14 final size:15
Alignment explanation
Indices: 7282224--7282253 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7282214 TTCGTTATCA
7282224 TTTGCCAT-TTTTAT
1 TTTGCCATGTTTTAT
7282238 TTTGCCATGTTTTAT
1 TTTGCCATGTTTTAT
7282253 T
1 T
7282254 CACTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.63
Consensus pattern (15 bp):
TTTGCCATGTTTTAT
Found at i:7286148 original size:26 final size:26
Alignment explanation
Indices: 7286097--7286150 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
7286087 AACAAATTGA
*
7286097 AAATACATTAAAAAAATTTTATACTT
1 AAATACATTAAAAAAATTGTATACTT
* *
7286123 AAATAACATTAAGATAATTGTA-ACTT
1 AAAT-ACATTAAAAAAATTGTATACTT
7286149 AA
1 AA
7286151 CAAATAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.54, C:0.07, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATACATTAAAAAAATTGTATACTT
Found at i:7286230 original size:11 final size:11
Alignment explanation
Indices: 7286216--7286264 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
7286206 ATATCCAAAT
7286216 AATAATAATAA
1 AATAATAATAA
* *
7286227 AATAGTAACAA
1 AATAATAATAA
*
7286238 TATAATAATAA
1 AATAATAATAA
* *
7286249 AATGATAGTAA
1 AATAATAATAA
7286260 AATAA
1 AATAA
7286265 CAACAGAAAA
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (11 bp):
AATAATAATAA
Found at i:7286256 original size:25 final size:24
Alignment explanation
Indices: 7286214--7286263 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
7286204 AAATATCCAA
7286214 ATAATAATAATAAAATAGTAACAAT
1 ATAATAATAATAAAATAGTAA-AAT
*
7286239 ATAATAATAA-AATGATAGTAAAAT
1 ATAATAATAATAA-AATAGTAAAAT
7286263 A
1 A
7286264 ACAACAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (24 bp):
ATAATAATAATAAAATAGTAAAAT
Found at i:7290426 original size:24 final size:23
Alignment explanation
Indices: 7290391--7290451 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
7290381 ATTTTTGGTG
7290391 TAATTTAATATTTT-TTTTGACAAA
1 TAATTT-ATATTTTATTTT-ACAAA
7290415 TAATTTAGTATTTATATTTTACAAA
1 TAATTTA-TATTT-TATTTTACAAA
*
7290440 -AGTTTATATTTT
1 TAATTTATATTTT
7290452 GGTAACCAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
22 1 0.03
23 6 0.18
24 16 0.48
25 6 0.18
26 4 0.12
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (23 bp):
TAATTTATATTTTATTTTACAAA
Found at i:7292994 original size:4 final size:4
Alignment explanation
Indices: 7292985--7293009 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7292975 AATTCTCATA
7292985 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
7293010 TTAAAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:7296305 original size:8 final size:8
Alignment explanation
Indices: 7296292--7296319 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
7296282 TTAAAGTGCA
7296292 ATTTTATC
1 ATTTTATC
7296300 ATTTTATC
1 ATTTTATC
7296308 ATTTTATC
1 ATTTTATC
7296316 ATTT
1 ATTT
7296320 ATGAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (8 bp):
ATTTTATC
Found at i:7298425 original size:31 final size:30
Alignment explanation
Indices: 7298386--7298466 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 30
7298376 TTAAGTAAAT
*
7298386 AAAT-AAAGTACAAAGGACTAAAGTT-ACC
1 AAATAAAAGTACAAAGGACTAAAATTGACC
* *
7298414 AATTTGAAAAGTAC-AAGAACTAAAATTGACC
1 AA-AT-AAAAGTACAAAGGACTAAAATTGACC
*
7298445 AAATAAAAGTACAGA-GACTAAA
1 AAATAAAAGTACAAAGGACTAAA
7298467 TCCACAGCTT
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
28 2 0.05
29 15 0.36
30 13 0.31
31 12 0.29
ACGTcount: A:0.56, C:0.12, G:0.14, T:0.19
Consensus pattern (30 bp):
AAATAAAAGTACAAAGGACTAAAATTGACC
Found at i:7299360 original size:96 final size:97
Alignment explanation
Indices: 7299243--7299483 Score: 270
Period size: 96 Copynumber: 2.4 Consensus size: 97
7299233 AATTTTAGGG
* * ** *
7299243 TTTTAAGGAAAAAAATTAAATAAATTAGGGTTTAGTGTTTGTTAATTAAATTAATTACT-AATTT
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTA-TAAATTT
*
7299307 TAAAAAATTAGATTATGGTTTAGTGTTTATGGT
65 AAAAAAATTAGATTATGGTTTAGTGTTTATGGT
*
7299340 TTTTAAGG-AAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTATAAATTTA
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTA
* *
7299404 AAAAAATTAGATTAGGATTTTAAGGTTTAGGGTTTTAGGGT
66 AAAAAATTAGATT---A---T--GGTTTAGTG-TTTATGGT
* * *
7299445 ATTTAAGAAAAAAAATCAAATAAATTAGGGTTTGGGGTT
1 TTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGGGTT
7299484 TAGGGTAACT
Statistics
Matches: 121, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
95 1 0.01
96 60 0.50
97 8 0.07
99 1 0.01
102 1 0.01
104 8 0.07
105 13 0.11
106 29 0.24
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (97 bp):
TTTTAAGGAAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTAAGTAAATTAATTATAAATTTA
AAAAAATTAGATTATGGTTTAGTGTTTATGGT
Found at i:7299744 original size:126 final size:126
Alignment explanation
Indices: 7299527--7300065 Score: 801
Period size: 126 Copynumber: 4.3 Consensus size: 126
7299517 AAAAGCTTCT
* * *
7299527 ACGTGGACGCTCTTTTGCTACAGTAATCTCTGAAAAAATAAATTTGAAAAGACGTGTCTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
7299592 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
7299653 ATGTGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTCAGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
* * * * **
7299718 ATAGTGTAAAAAATGCTTCAAGCAGGATGCATTGTTAGCAAAAGCACTGAAAGAAGCTTTC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * *
7299779 ACATGGACGCTATTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
* * *
7299844 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * ***
7299905 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
* *
7299970 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTTAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
7300031 ACGTGGACGATCTTTCGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
7300066 TAACTTGGGC
Statistics
Matches: 372, Mismatches: 39, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 2 0.01
126 368 0.99
127 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGTGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:7303317 original size:116 final size:116
Alignment explanation
Indices: 7303073--7303685 Score: 1050
Period size: 116 Copynumber: 5.3 Consensus size: 116
7303063 TTATATTTTT
* * *
7303073 TTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAGTAATTTTCATTTTATT-A
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
* * * **
7303137 AAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACATTTTATATTG
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
* *
7303188 TCACATGAAATAATATAAAAATATTCAAAATGTTGTCTTATTTAAAATAATTTTCATTTTATTAA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
7303253 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
*
7303304 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
7303369 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
* *
7303420 TTACATAAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTAA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
* * *
7303485 AAATATAAAGGTAAATTATAATTACTTTATTTAAAACAACATTTTATCTAA
66 AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
7303536 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAA-TTTCTATTTTATTA
1 TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTC-ATTTTATTA
7303600 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
65 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
*
7303652 TTACATGAAATAATATAAAAAGATTCAAAATGTT
1 TTACATGAAATAATATAAAAATATTCAAAATGTT
7303686 TGTACAAATA
Statistics
Matches: 473, Mismatches: 23, Indels: 3
0.95 0.05 0.01
Matches are distributed among these distances:
115 61 0.13
116 412 0.87
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
TTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTTCATTTTATTAA
AAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTAA
Found at i:7304207 original size:30 final size:30
Alignment explanation
Indices: 7304166--7304231 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
7304156 GTTGAACTGT
* *
7304166 TGGGCCCGGTGATTGTGTAGGTC-CTGTTGC
1 TGGGCCCGGTGATTGTGT-GGGCGCTGTTGA
*
7304196 TGGGCCGGGTGATTGTGTGGGCGCTGTTGA
1 TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
7304226 TGGGCC
1 TGGGCC
7304232 TGCGTCGTCG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 3 0.09
30 29 0.91
ACGTcount: A:0.06, C:0.18, G:0.45, T:0.30
Consensus pattern (30 bp):
TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
Found at i:7305534 original size:30 final size:30
Alignment explanation
Indices: 7305500--7305560 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
7305490 AAAAATCACC
7305500 ATAAATTGTAGAAATCGAATTAGAAGATGA
1 ATAAATTGTAGAAATCGAATTAGAAGATGA
7305530 ATAAATTGTAGAAATCGAATTAGAAGATGA
1 ATAAATTGTAGAAATCGAATTAGAAGATGA
7305560 A
1 A
7305561 CAAAATATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.51, C:0.03, G:0.20, T:0.26
Consensus pattern (30 bp):
ATAAATTGTAGAAATCGAATTAGAAGATGA
Found at i:7307195 original size:38 final size:39
Alignment explanation
Indices: 7307145--7307440 Score: 281
Period size: 46 Copynumber: 6.9 Consensus size: 39
7307135 CTGATATGAA
7307145 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
7307184 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
7307222 ATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTG
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAACCTG
7307268 -TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----TG
*
7307311 AAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAG
1 --ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G
* **
7307359 ATGTGTAAGACCATGGTTGAAAGATACCATGACAATGTG
1 ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
*
7307398 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 --ATG---TG--TAAGACCATGGTTGAAAGATACCATGGCAAC
7307441 ATGACAGAAA
Statistics
Matches: 226, Mismatches: 6, Indels: 43
0.82 0.02 0.16
Matches are distributed among these distances:
38 70 0.31
39 1 0.00
40 2 0.01
41 6 0.03
43 4 0.02
44 3 0.01
46 139 0.62
48 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (39 bp):
ATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG
Found at i:7307255 original size:46 final size:46
Alignment explanation
Indices: 7307188--7307474 Score: 369
Period size: 46 Copynumber: 6.4 Consensus size: 46
7307178 AACCTGTGTG
7307188 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
7307234 TAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---TG--
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
*
7307272 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* * *
7307318 TAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGATGTG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* ** * * *
7307364 TAAGACCATGGTTGAAAGATACCATGACAATGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
* *
7307410 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATG-A
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGTA
*
7307455 GTAAGACCATAGTTGAAAGA
1 -TAAGACCATGGTTGAAAGA
7307475 CACTTTGGCA
Statistics
Matches: 217, Mismatches: 14, Indels: 20
0.86 0.06 0.08
Matches are distributed among these distances:
38 34 0.16
40 2 0.01
41 2 0.01
43 2 0.01
44 2 0.01
45 2 0.01
46 173 0.80
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTA
Found at i:7307270 original size:84 final size:84
Alignment explanation
Indices: 7307135--7307440 Score: 459
Period size: 84 Copynumber: 3.5 Consensus size: 84
7307125 AGTGTGCTCT
*
7307135 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
7307200 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
7307219 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
7307284 TGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAAC
* *
7307303 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGACAACCTGATATGAGATGTGTAAG
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACC-----T--G-TGTGTAAG
* *
7307368 ACCATGGTTGAAAGATACCATGACAAT
58 ACCATGGTTGAAAGATACCATGGCAAC
* * * *
7307395 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAAC
7307441 ATGACAGAAA
Statistics
Matches: 203, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
84 128 0.63
89 1 0.00
91 1 0.00
92 73 0.36
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (84 bp):
CTGATATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
TGAAAGATACCATGGCAAC
Found at i:7307790 original size:23 final size:25
Alignment explanation
Indices: 7307745--7307791 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
7307735 AATAAATATA
*
7307745 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
7307770 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
7307792 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:7308396 original size:7 final size:7
Alignment explanation
Indices: 7308386--7308416 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
7308376 GTTAAATAAA
7308386 AAATACT
1 AAATACT
7308393 AAATACT
1 AAATACT
7308400 AAATACT
1 AAATACT
7308407 AAATAC-
1 AAATACT
7308413 AAAT
1 AAAT
7308417 CCATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.17
7 20 0.83
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATACT
Found at i:7308397 original size:14 final size:14
Alignment explanation
Indices: 7308378--7308411 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
7308368 AAATATTAGT
7308378 TAAATAAAAAATAC
1 TAAATAAAAAATAC
**
7308392 TAAATACTAAATAC
1 TAAATAAAAAATAC
7308406 TAAATA
1 TAAATA
7308412 CAAATCCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.09, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAAATAC
Found at i:7309600 original size:20 final size:22
Alignment explanation
Indices: 7309567--7309613 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
7309557 TAACGAGAGT
7309567 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
*
7309589 TTTGAGA-G-ATTTGAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
7309609 TTTGA
1 TTTGA
7309614 AAGAATATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 16 0.67
21 1 0.04
22 7 0.29
ACGTcount: A:0.40, C:0.00, G:0.28, T:0.32
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:7309612 original size:11 final size:11
Alignment explanation
Indices: 7309567--7309618 Score: 63
Period size: 11 Copynumber: 4.9 Consensus size: 11
7309557 TAACGAGAGT
*
7309567 TTTGAGAGGAA
1 TTTGAGAGAAA
*
7309578 TTTAAGAGAAA
1 TTTGAGAGAAA
7309589 TTTGAGAG--A
1 TTTGAGAGAAA
7309598 TTTGAGAGAAA
1 TTTGAGAGAAA
*
7309609 TTTGAAAGAA
1 TTTGAGAGAA
7309619 TATTGAAAGA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
9 9 0.26
11 26 0.74
ACGTcount: A:0.44, C:0.00, G:0.27, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:7309630 original size:31 final size:31
Alignment explanation
Indices: 7309567--7309630 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
7309557 TAACGAGAGT
* *
7309567 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
7309598 TTTGAGAGAAATTTGAA-AG-AATATTGAAAGA
1 TTTGAGAGAAATTT-AAGAGAAAT-TTGAAAGA
7309629 TT
1 TT
7309631 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 3 0.10
31 24 0.83
32 2 0.07
ACGTcount: A:0.44, C:0.00, G:0.25, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:7315704 original size:35 final size:35
Alignment explanation
Indices: 7315658--7315730 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
7315648 CATCTTTCAG
7315658 ATTGAATTTTAAGAACCTTTTTTGTATTTGTTTTA
1 ATTGAATTTTAAGAACCTTTTTTGTATTTGTTTTA
7315693 ATTGAATTTTAAGAACCTTTTTTGTATTTGTTTTA
1 ATTGAATTTTAAGAACCTTTTTTGTATTTGTTTTA
7315728 ATT
1 ATT
7315731 TGCTTGATTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (35 bp):
ATTGAATTTTAAGAACCTTTTTTGTATTTGTTTTA
Found at i:7316513 original size:6 final size:6
Alignment explanation
Indices: 7316504--7316535 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7316494 CAACTAATTT
*
7316504 TATATT TATATC TATATC TATATC TATATC TA
1 TATATC TATATC TATATC TATATC TATATC TA
7316536 CATATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.53
Consensus pattern (6 bp):
TATATC
Found at i:7316942 original size:16 final size:16
Alignment explanation
Indices: 7316918--7316948 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7316908 CCCTTGGTTC
7316918 ATTGGAATGGAATAGG
1 ATTGGAATGGAATAGG
*
7316934 ATTGTAATGGAATAG
1 ATTGGAATGGAATAG
7316949 TCATTATGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (16 bp):
ATTGGAATGGAATAGG
Found at i:7317181 original size:22 final size:21
Alignment explanation
Indices: 7317150--7317190 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
7317140 AATCTATAAA
* *
7317150 TATAATATTAATATATAAATTG
1 TATAAAATTAAAATA-AAATTG
7317172 TATAAAATTAAAATAAAAT
1 TATAAAATTAAAATAAAAT
7317191 AAAGCAGTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
TATAAAATTAAAATAAAATTG
Found at i:7326669 original size:11 final size:11
Alignment explanation
Indices: 7326653--7326687 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
7326643 CTCTTCCCCC
7326653 CTCCCTTCTCT
1 CTCCCTTCTCT
7326664 CTCCCTTCTCT
1 CTCCCTTCTCT
7326675 CTTCCC-TCTCT
1 C-TCCCTTCTCT
7326686 CT
1 CT
7326688 TTTTTTTTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:7327939 original size:9 final size:9
Alignment explanation
Indices: 7327925--7327950 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
7327915 TATAGCTTCT
7327925 TATTATTAC
1 TATTATTAC
7327934 TATTATTAC
1 TATTATTAC
7327943 TATTATTA
1 TATTATTA
7327951 TTAGTGTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (9 bp):
TATTATTAC
Found at i:7331030 original size:25 final size:25
Alignment explanation
Indices: 7331000--7331050 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
7330990 TCAACAATTC
7331000 AATTGTGCCTCACAAACAATGTGTT
1 AATTGTGCCTCACAAACAATGTGTT
*
7331025 AATTGTGCTTCACAAACAATGTGTT
1 AATTGTGCCTCACAAACAATGTGTT
7331050 A
1 A
7331051 CAGGAGGTGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (25 bp):
AATTGTGCCTCACAAACAATGTGTT
Found at i:7337316 original size:71 final size:71
Alignment explanation
Indices: 7337200--7337342 Score: 259
Period size: 71 Copynumber: 2.0 Consensus size: 71
7337190 CACTTCCACT
*
7337200 CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGCCTTGCTTGAATTACTACAGTAACAGC
1 CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGACTTGCTTGAATTACTACAGTAACAGC
7337265 TAAAGG
66 TAAAGG
* *
7337271 CAAGTCTGAGTAACATTGTTTTCGACAAAATAGGCTAGACTTGCTTGAATTGCTACAGTAACAGC
1 CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGACTTGCTTGAATTACTACAGTAACAGC
7337336 TAAAGG
66 TAAAGG
7337342 C
1 C
7337343 TAAAGCTGAT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
71 69 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (71 bp):
CAAGTCTGAGTAACATTGTTTTCCACAAAATAGGCTAGACTTGCTTGAATTACTACAGTAACAGC
TAAAGG
Found at i:7339642 original size:20 final size:20
Alignment explanation
Indices: 7339617--7339655 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7339607 ATAGGGCACA
*
7339617 TTTCCCTGAATTGCCAAACG
1 TTTCCCTAAATTGCCAAACG
7339637 TTTCCCTAAATTGCCAAAC
1 TTTCCCTAAATTGCCAAAC
7339656 ATCGAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.31
Consensus pattern (20 bp):
TTTCCCTAAATTGCCAAACG
Found at i:7340015 original size:132 final size:131
Alignment explanation
Indices: 7339645--7340083 Score: 531
Period size: 132 Copynumber: 3.3 Consensus size: 131
7339635 CGTTTCCCTA
* * ** * * * * *
7339645 AATTGCCAAACATCGAATATTTCCTTTGTTTTGAAGAGTTTTTAGAAAACATGAGTGAAATTCAA
1 AATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATTTTTAGAAGACAT-AGTGAAATTCTA
* * * *
7339710 AAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCG
65 AAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
*
7339775 TG
130 CG
* * * * * * *
7339777 AATTACCCAATATCGAACATCGCCTTTG-TTTAAAGAATTTTTAAAAGATATGGATGAAACTCTA
1 AATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATTTTTAGAAGACATAG-TGAAATTCTA
* *
7339841 AAGGGATCTTCAATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
65 AAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
7339906 CG
130 CG
* * * * *
7339908 AATTGTCAAATATCGAACATCGCCCTCGTTTTAAAGGATTTTTAGAAGACATAAGTGAAATTTTG
1 AATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATTTTTAGAAGACAT-AGTGAAATTCTA
* *
7339973 AAGGGATATTCGATTATTTTGAGCAAACGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
65 AAGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCG
*
7340038 CA
130 CG
* *
7340040 AATTGCCAAATATCAAATC-TCGTCTTCGTTTTAAAGAATTTTTA
1 AATTGCCAAATATCGAA-CATCGCCTTCGTTTTAAAGAATTTTTA
7340084 AATGAATAGT
Statistics
Matches: 260, Mismatches: 43, Indels: 8
0.84 0.14 0.03
Matches are distributed among these distances:
130 1 0.00
131 109 0.42
132 148 0.57
133 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (131 bp):
AATTGCCAAATATCGAACATCGCCTTCGTTTTAAAGAATTTTTAGAAGACATAGTGAAATTCTAA
AGGGATCTTCGATTATTTTGAGCAAACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCGC
G
Found at i:7340443 original size:16 final size:16
Alignment explanation
Indices: 7340422--7340453 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7340412 AACAAGATAC
7340422 AAAAATAATGGACTAA
1 AAAAATAATGGACTAA
*
7340438 AAAAATGATGGACTAA
1 AAAAATAATGGACTAA
7340454 TAATCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.06, G:0.16, T:0.19
Consensus pattern (16 bp):
AAAAATAATGGACTAA
Found at i:7341280 original size:14 final size:14
Alignment explanation
Indices: 7341238--7341269 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7341228 TACGAAGTAC
*
7341238 ATATGTACATATAT
1 ATATGTATATATAT
7341252 ATATGTATATATAT
1 ATATGTATATATAT
7341266 ATAT
1 ATAT
7341270 TAATGTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (14 bp):
ATATGTATATATAT
Found at i:7343193 original size:17 final size:16
Alignment explanation
Indices: 7343166--7343210 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7343156 GAATTTAATC
*
7343166 TTTATATTTTTATTTTT
1 TTTA-ATTTTTATATTT
7343183 TCTTAATTTTTATATTT
1 T-TTAATTTTTATATTT
*
7343200 TTTAAATTTTA
1 TTTAATTTTTA
7343211 GTCTGCACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 9 0.36
17 13 0.52
18 3 0.12
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTAATTTTTATATTT
Found at i:7351373 original size:69 final size:68
Alignment explanation
Indices: 7351292--7351494 Score: 244
Period size: 71 Copynumber: 2.9 Consensus size: 68
7351282 ACTTAAATCG
* *
7351292 ACAATTCCAATCAGAATCAATAATTACAAGCACGAAATTGAATAACTCTACAACTAATTAACTTA
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATT-AATAATTCTACAACTAATTAACTTA
7351357 ACTA
65 ACTA
* * * * * * *
7351361 GCAATTACAATCAGAACCAATAATTACAAGCACTAAAATAAATAATTCTACAACCAGTTAACAAC
1 ACAATTCCAATCAGAATCAATAATTACAAGCACT-AAATTAATAATTCTACAACTAATTAAC--T
7351426 TAACTA
63 TAACTA
* * * *
7351432 ACAATTCCAATAAGAATCCATAATTACAAGCACTAAATTATATAATTCTACTATTAATTAACT
1 ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTA-ATAATTCTACAACTAATTAACT
7351495 ACCCAACTAA
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
69 49 0.45
70 9 0.08
71 52 0.47
ACGTcount: A:0.48, C:0.20, G:0.05, T:0.27
Consensus pattern (68 bp):
ACAATTCCAATCAGAATCAATAATTACAAGCACTAAATTAATAATTCTACAACTAATTAACTTAA
CTA
Found at i:7351462 original size:71 final size:69
Alignment explanation
Indices: 7351292--7351482 Score: 240
Period size: 69 Copynumber: 2.7 Consensus size: 69
7351282 ACTTAAATCG
* * * * * *
7351292 ACAATTCCAATCAGAATCAATAATTACAAGCACGAAATTGAATAACTCTACAACTAATTAACTTA
1 ACAATTCCAATCAGAATCCATAATTACAAGCACTAAATTAAATAATTCTACAACCAATTAACCTA
7351357 ACTA
66 ACTA
* * * *
7351361 GCAATTACAATCAGAA-CCAATAATTACAAGCACTAAAATAAATAATTCTACAACCAGTTAACAA
1 ACAATTCCAATCAGAATCC-ATAATTACAAGCACTAAATTAAATAATTCTACAACCAATTAAC--
7351425 CTAACTA
63 CTAACTA
* *
7351432 ACAATTCCAATAAGAATCCATAATTACAAGCACTAAATTATATAATTCTAC
1 ACAATTCCAATCAGAATCCATAATTACAAGCACTAAATTAAATAATTCTAC
7351483 TATTAATTAA
Statistics
Matches: 103, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
68 1 0.01
69 51 0.50
71 49 0.48
72 2 0.02
ACGTcount: A:0.49, C:0.20, G:0.05, T:0.26
Consensus pattern (69 bp):
ACAATTCCAATCAGAATCCATAATTACAAGCACTAAATTAAATAATTCTACAACCAATTAACCTA
ACTA
Found at i:7355442 original size:42 final size:42
Alignment explanation
Indices: 7355359--7355502 Score: 175
Period size: 42 Copynumber: 3.4 Consensus size: 42
7355349 TCTCATGAGC
* *
7355359 TTCAGTT-AACTCTTATGAGTTTCAGTTTAACCCTAATTGGGT
1 TTCAGTTCAACTCTTATGAGCTTCAGTTTAACCCTTA-TGGGT
* *
7355401 TTCAGTTCAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGGT
1 TTCAGTTCAACTCTTATGAGCTTCAGTTTAACCCTTATGGGT
* * *
7355443 TTCCGTTCAACTCCTATGAGCTTTC-GTTCAACCCTTATGGGT
1 TTCAGTTCAACTCTTATGAGC-TTCAGTTTAACCCTTATGGGT
* *
7355485 TTCAGTTTAACACTTATG
1 TTCAGTTCAACTCTTATG
7355503 TGTTTTAGTG
Statistics
Matches: 87, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 59 0.68
43 28 0.32
ACGTcount: A:0.20, C:0.22, G:0.17, T:0.42
Consensus pattern (42 bp):
TTCAGTTCAACTCTTATGAGCTTCAGTTTAACCCTTATGGGT
Found at i:7355472 original size:63 final size:64
Alignment explanation
Indices: 7355335--7355507 Score: 174
Period size: 63 Copynumber: 2.7 Consensus size: 64
7355325 TTCAGTGTTT
* * * *
7355335 GCTTTCAGTTTAGCTCTCATGAGCTTCAG-TTAACTCTTATGAGTTTCAGTTTAACCCTAATTG
1 GCTTTCAGTTCAGCTCTTATGAGCTTCAGTTTAACACTTATGAGTTTCAGTTCAACCCTAATTG
* * * * *
7355398 GGTTTCAGTTCAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGGTTTCCGTTCAACTCCT-A-TG
1 GCTTTCAGTTCAGCTCTTATGAGCTTCAGTTTAACACTTATGAGTTTCAGTTCAAC-CCTAATTG
* * * * *
7355461 AGCTTTC-GTTCAACCCTTATGGGTTTCAGTTTAACACTTATGTGTTT
1 -GCTTTCAGTTCAGCTCTTATGAGCTTCAGTTTAACACTTATGAGTTT
7355508 TAGTGTAGCC
Statistics
Matches: 91, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
63 60 0.66
64 28 0.31
65 3 0.03
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.42
Consensus pattern (64 bp):
GCTTTCAGTTCAGCTCTTATGAGCTTCAGTTTAACACTTATGAGTTTCAGTTCAACCCTAATTG
Found at i:7355507 original size:21 final size:21
Alignment explanation
Indices: 7355337--7355507 Score: 123
Period size: 21 Copynumber: 8.1 Consensus size: 21
7355327 CAGTGTTTGC
* * *
7355337 TTTCAGTTTAGCTCTCATGAG
1 TTTCAGTTTAACCCTTATGAG
* *
7355358 CTTCAG-TTAACTCTTATGAG
1 TTTCAGTTTAACCCTTATGAG
* *
7355378 TTTCAGTTTAACCCTAATTGGG
1 TTTCAGTTTAACCCTTA-TGAG
* * * *
7355400 TTTCAGTTCAGCTCTTTTGAG
1 TTTCAGTTTAACCCTTATGAG
* *
7355421 CTTCAGTTTAACCCTTATGGG
1 TTTCAGTTTAACCCTTATGAG
* *
7355442 TTTCCGTTCAACTCC-TATGAG
1 TTTCAGTTTAAC-CCTTATGAG
* *
7355463 CTTTC-GTTCAACCCTTATGGG
1 -TTTCAGTTTAACCCTTATGAG
* *
7355484 TTTCAGTTTAACACTTATGTG
1 TTTCAGTTTAACCCTTATGAG
7355505 TTT
1 TTT
7355508 TAGTGTAGCC
Statistics
Matches: 117, Mismatches: 27, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
20 23 0.20
21 73 0.62
22 21 0.18
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (21 bp):
TTTCAGTTTAACCCTTATGAG
Found at i:7357002 original size:19 final size:19
Alignment explanation
Indices: 7356978--7357015 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
7356968 CAAACACACT
7356978 TCACACACTTATGAAACTA
1 TCACACACTTATGAAACTA
7356997 TCACACACTTATGAAACTA
1 TCACACACTTATGAAACTA
7357016 ACTCATGCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.05, T:0.26
Consensus pattern (19 bp):
TCACACACTTATGAAACTA
Found at i:7357952 original size:34 final size:34
Alignment explanation
Indices: 7357914--7358019 Score: 103
Period size: 34 Copynumber: 3.1 Consensus size: 34
7357904 GGGTGTAGAT
*
7357914 TTTTTTTAAAAATTAATTAAATTAGGTTTTAAGG
1 TTTTTTTAAAAATTAATTAAATTAGGATTTAAGG
*
7357948 --TTTTTAAGTAAATTAATTAAATTAGGATTTAA-A
1 TTTTTTTAA--AAATTAATTAAATTAGGATTTAAGG
* * * *
7357981 ATTTTTAAGAAAATTAAATAAATTAGGGTTT-AGG
1 TTTTTTTA-AAAATTAATTAAATTAGGATTTAAGG
7358015 TTTTT
1 TTTTT
7358020 AAATAAATAA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
32 7 0.12
33 1 0.02
34 45 0.76
35 5 0.08
36 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (34 bp):
TTTTTTTAAAAATTAATTAAATTAGGATTTAAGG
Found at i:7358341 original size:125 final size:126
Alignment explanation
Indices: 7358115--7358632 Score: 696
Period size: 125 Copynumber: 4.1 Consensus size: 126
7358105 GTTTTGTTTT
* * *
7358115 TTTTTCTACAGTAGTT-TCT-AAAAAATTAATTTTGAGAAGATGATTCT-AAAAAGATAATGTTA
1 TTTTTCTACAGTAGTTCT-TGAAAAAA-TAATTTTGAGAAGATGGTTCTGAAAAA-ATAGTGTCA
* * *
7358177 AAAACGCTTCAAGCAGGATGCACTGTCAGTATAAGTACTGAAAAAAGCTCCTACGTGGATGCTC
63 AAAACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
7358241 TTTTTCTACAGTAGTTCTT-AAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAA
*
7358305 ACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
66 ACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
** * *
7358366 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGGCGGTTTTGAAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAA
* * * *
7358431 ATGCTTCAAGCA-GATGCACTGTCAGCAAAATTACTGAAAAAAGCT-CTCACGTGAACACT-
66 ACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCT-ACGTGGACGCTC
* * * * *
7358490 TTTTTTTATAGTAGTTATTGAAAAAATAGTTTTGAGAAGATAGTT-TGGAAAAAATAGTGTCAAA
1 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATGGTTCT-GAAAAAATAGTGTCAAA
* *
7358554 ATCGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTTCC-ACATAGG-CGCTC
65 AACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGC-TCCTACGT-GGACGCTC
*
7358616 TTTTTCTATAGTAGTTC
1 TTTTTCTACAGTAGTTC
7358633 GTGCTTGGCC
Statistics
Matches: 350, Mismatches: 32, Indels: 20
0.87 0.08 0.05
Matches are distributed among these distances:
123 1 0.00
124 66 0.19
125 184 0.53
126 97 0.28
127 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (126 bp):
TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGATGGTTCTGAAAAAATAGTGTCAAAA
ACGCTTCAAGCAGGATGCACTGTCAGTAAAATTACTGAAAAAAGCTCCTACGTGGACGCTC
Found at i:7358532 original size:14 final size:14
Alignment explanation
Indices: 7358501--7358547 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
7358491 TTTTTTATAG
7358501 TAGTTATTGAAAAAA
1 TAGTT-TTGAAAAAA
* *
7358516 TAGTTTTGAGAAGA
1 TAGTTTTGAAAAAA
*
7358530 TAGTTTGGAAAAAA
1 TAGTTTTGAAAAAA
7358544 TAGT
1 TAGT
7358548 GTCAAAATCG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 22 0.81
15 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.21, T:0.34
Consensus pattern (14 bp):
TAGTTTTGAAAAAA
Found at i:7360098 original size:18 final size:18
Alignment explanation
Indices: 7360062--7360098 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7360052 GGAAAAGGAA
* *
7360062 ACATATAAGGGTTAGGAT
1 ACATATAAGGGCTAAGAT
7360080 ACATATAAGGGCTAAGAT
1 ACATATAAGGGCTAAGAT
7360098 A
1 A
7360099 TGAACCTGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.24
Consensus pattern (18 bp):
ACATATAAGGGCTAAGAT
Found at i:7362783 original size:47 final size:47
Alignment explanation
Indices: 7362684--7362814 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
7362674 CACAATCAAT
* * *
7362684 AAGTACCTATACCATGGCCCGTAGCCAAATCAATGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCACA
* * * * *
7362731 GAGTACCTATATCATGGCTCATAGCCAAATCAAGGTAA-TTCCTCACA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTT-ATCACA
*
7362778 AAGTACCTATACCATGGCCCGTAGCCAAATTAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
7362815 TTTATCGCTC
Statistics
Matches: 70, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
46 2 0.03
47 68 0.97
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCACA
Found at i:7370195 original size:13 final size:13
Alignment explanation
Indices: 7370173--7370205 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7370163 TTGCTTTAGT
7370173 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
7370185 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
7370198 TTAGTTTA
1 TTAGTTTA
7370206 ATAAACAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:7378286 original size:13 final size:13
Alignment explanation
Indices: 7378264--7378296 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7378254 TTGCTTTAGT
7378264 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
7378276 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
7378289 TTAGTTTA
1 TTAGTTTA
7378297 ATAAATAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.20
13 16 0.80
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:7385916 original size:15 final size:16
Alignment explanation
Indices: 7385896--7385933 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7385886 GTCCTGCTCG
*
7385896 ACCACGACCAT-AGCC
1 ACCACGACCATCAACC
7385911 ACCACGA-CATCAACC
1 ACCACGACCATCAACC
7385926 ACCACGAC
1 ACCACGAC
7385934 AACCTCTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 3 0.15
15 17 0.85
ACGTcount: A:0.37, C:0.47, G:0.11, T:0.05
Consensus pattern (16 bp):
ACCACGACCATCAACC
Found at i:7397868 original size:39 final size:39
Alignment explanation
Indices: 7397772--7397852 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
7397762 TGTGAATATA
*
7397772 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
*
7397811 TATATGCGAGAATTATATCCGGACTTTAGGTTCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
7397850 TAT
1 TAT
7397853 GTGCTGGACA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
Found at i:7405801 original size:65 final size:65
Alignment explanation
Indices: 7405697--7405826 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
7405687 AAATATGTTA
7405697 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
1 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
*
7405762 GTTTTCAAGTATGAATTTAGCCAAAAGTATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
1 GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
7405827 AACTTGTTCC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (65 bp):
GTTTTCAAGTATGAATTTAGCCAAAAGAATTATATTTGGGCTTGGGATAATATTCCGAGGATTTG
Found at i:7406950 original size:12 final size:12
Alignment explanation
Indices: 7406935--7406969 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
7406925 AATTTAAATT
*
7406935 TTATTAGGATTA
1 TTATTAAGATTA
7406947 TTATTAAGATTA
1 TTATTAAGATTA
*
7406959 TTATTTAGATT
1 TTATTAAGATT
7406970 TAATTTTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.54
Consensus pattern (12 bp):
TTATTAAGATTA
Found at i:7408489 original size:25 final size:25
Alignment explanation
Indices: 7408455--7408506 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
7408445 ACTATTATTT
7408455 ACATACAAAATACTCTCCCAGTCTA
1 ACATACAAAATACTCTCCCAGTCTA
*
7408480 ACATACAAAATACTCTCCTAGTCTA
1 ACATACAAAATACTCTCCCAGTCTA
7408505 AC
1 AC
7408507 TCCGAGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.40, C:0.31, G:0.04, T:0.25
Consensus pattern (25 bp):
ACATACAAAATACTCTCCCAGTCTA
Found at i:7409516 original size:16 final size:18
Alignment explanation
Indices: 7409488--7409521 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7409478 TTAAAATTGG
7409488 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
7409505 ATTGAG-AAATTAATTTA
1 ATTGAGAAAATTAATTTA
7409522 GTTAATCTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:7409911 original size:19 final size:19
Alignment explanation
Indices: 7409883--7409919 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
7409873 AAGTAGTGAG
7409883 AATTTATTTTCT-AGAATA
1 AATTTATTTTCTAAGAATA
7409901 AATTATATTTTCTAAGAAT
1 AATT-TATTTTCTAAGAAT
7409920 TTCGATTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:7413483 original size:27 final size:26
Alignment explanation
Indices: 7413429--7413480 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
7413419 TTTGTGATAT
7413429 TTTCACCTAAAAAATTTTAAAATAAA
1 TTTCACCTAAAAAATTTTAAAATAAA
7413455 TTTCACCTAAAAAATTTTAAAATAAA
1 TTTCACCTAAAAAATTTTAAAATAAA
7413481 ATTATCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.35
Consensus pattern (26 bp):
TTTCACCTAAAAAATTTTAAAATAAA
Found at i:7422065 original size:9 final size:9
Alignment explanation
Indices: 7422051--7422077 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7422041 CTATCATTAT
7422051 AAAATAATA
1 AAAATAATA
7422060 AAAATAATA
1 AAAATAATA
7422069 AAAATAATA
1 AAAATAATA
7422078 GTATAAGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
AAAATAATA
Found at i:7422226 original size:42 final size:41
Alignment explanation
Indices: 7422179--7422257 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
7422169 CTATGTACCT
*
7422179 GAAAAAATAAAAAATAAAATAGAATTAAACGTTTTGATCTTG
1 GAAAAAATAAAAAA-AAAATAGAATTAAAAGTTTTGATCTTG
* *
7422221 GAAAAAATAAAATAAAAATTGAATTAAAAGTTTTGAT
1 GAAAAAATAAAAAAAAAATAGAATTAAAAGTTTTGAT
7422258 TAAAATTTCG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
41 21 0.62
42 13 0.38
ACGTcount: A:0.57, C:0.03, G:0.11, T:0.29
Consensus pattern (41 bp):
GAAAAAATAAAAAAAAAATAGAATTAAAAGTTTTGATCTTG
Found at i:7423009 original size:10 final size:9
Alignment explanation
Indices: 7422993--7423041 Score: 53
Period size: 10 Copynumber: 5.0 Consensus size: 9
7422983 TTAATTTCTA
7422993 AAAATAAAT
1 AAAATAAAT
7423002 ACAAATAAAT
1 A-AAATAAAT
*
7423012 AAAGATAATT
1 AAA-ATAAAT
7423022 AAAGATAAAT
1 AAA-ATAAAT
7423032 AAAAATAAAT
1 -AAAATAAAT
7423042 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 3 0.09
10 29 0.83
11 3 0.09
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.22
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7423019 original size:20 final size:20
Alignment explanation
Indices: 7422991--7423041 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
7422981 AATTAATTTC
7422991 TAAAAATAAATACAA-ATAAA
1 TAAAAATAAATA-AAGATAAA
* *
7423011 TAAAGATAATTAAAGATAAA
1 TAAAAATAAATAAAGATAAA
7423031 TAAAAATAAAT
1 TAAAAATAAAT
7423042 CCTAAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.24
Consensus pattern (20 bp):
TAAAAATAAATAAAGATAAA
Found at i:7423771 original size:96 final size:97
Alignment explanation
Indices: 7423647--7423824 Score: 272
Period size: 96 Copynumber: 1.8 Consensus size: 97
7423637 TTTTTTCTTT
*
7423647 TTTTTGCTTAAGAATATACTGAACCTTTTGACGCGAAGAGA-ATTGACAGCCAAGCACCCCACCC
1 TTTTTGCTTAAGAACATACTGAACCTTTTGACGCGAAGAGAGA-TGACAGCCAAGCACCCCACCC
*
7423711 CGGTTACTTAGCCCAACATTCTCCTAATTTTTA
65 CGGTTACTCAGCCCAACATTCTCCTAATTTTTA
* *
7423744 TTTTT-CTTAAGAACATA-TCGAACCTTTTGACGTGAAGAGAGATGACAGCCAAGCACCTCACCC
1 TTTTTGCTTAAGAACATACT-GAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCC
*
7423807 TGGTTACTCAGCCCAACA
65 CGGTTACTCAGCCCAACA
7423825 CATTCTTAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
95 1 0.01
96 67 0.91
97 6 0.08
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (97 bp):
TTTTTGCTTAAGAACATACTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCACCCC
GGTTACTCAGCCCAACATTCTCCTAATTTTTA
Found at i:7425034 original size:8 final size:8
Alignment explanation
Indices: 7425021--7425149 Score: 101
Period size: 7 Copynumber: 15.9 Consensus size: 8
7425011 AATATCTAAA
*
7425021 AATAAAGT
1 AATAAAAT
7425029 AAT-AAAT
1 AATAAAAT
7425036 AATAAAAT
1 AATAAAAT
7425044 AAAATAAAAT
1 --AATAAAAT
7425054 AATAAAAT
1 AATAAAAT
7425062 AATAATAATAT
1 AAT-A-AA-AT
*
7425073 AATAATAT
1 AATAAAAT
7425081 AAT-AAAT
1 AATAAAAT
7425088 AAT-AAAT
1 AATAAAAT
7425095 AATATAATAT
1 AATA-AA-AT
7425105 AATATAATAT
1 AATA-AA-AT
7425115 AAT-AAAT
1 AATAAAAT
7425122 AATAAAAT
1 AATAAAAT
7425130 -A-AAAAT
1 AATAAAAT
*
7425136 AA-AGAAT
1 AATAAAAT
7425143 AATAAAA
1 AATAAAA
7425150 ATTGGGTTGC
Statistics
Matches: 104, Mismatches: 5, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
6 5 0.05
7 32 0.31
8 32 0.31
9 4 0.04
10 26 0.25
11 5 0.05
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.28
Consensus pattern (8 bp):
AATAAAAT
Found at i:7425046 original size:5 final size:5
Alignment explanation
Indices: 7425036--7425138 Score: 61
Period size: 5 Copynumber: 20.2 Consensus size: 5
7425026 AGTAATAAAT
* *
7425036 AATAA AATAA AATAA AAT-- AATAA AATAA TAATAA TATAA TAATAT AAT-A
1 AATAA AATAA AATAA AATAA AATAA AATAA -AATAA AATAA -AATAA AATAA
* * * * *
7425085 AATAATA AATAA TATAA TATAA TATAA TATAA TAA-AT AATAA AATAAA
1 AAT-A-A AATAA AATAA AATAA AATAA AATAA -AATAA AATAA AAT-AA
7425133 AATAA A
1 AATAA A
7425139 GAATAATAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
3 3 0.04
4 5 0.06
5 53 0.66
6 15 0.19
7 4 0.05
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (5 bp):
AATAA
Found at i:7425057 original size:3 final size:3
Alignment explanation
Indices: 7425028--7425147 Score: 100
Period size: 3 Copynumber: 42.0 Consensus size: 3
7425018 AAAAATAAAG
7425028 TAA TAAA TAA TAA -AA TAA -AA TAA -AA TAA TAA -AA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7425070 T-A TAA TAA T-A TAA TAAA TAA TAAA TAA T-A TAA T-A TAA T-A TAA
1 TAA TAA TAA TAA TAA T-AA TAA T-AA TAA TAA TAA TAA TAA TAA TAA
* *
7425112 T-A TAA TAAA TAA TAA -AA TAA AAA TAAA GAA TAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
7425148 AAATTGGGTT
Statistics
Matches: 97, Mismatches: 4, Indels: 32
0.73 0.03 0.24
Matches are distributed among these distances:
2 22 0.23
3 61 0.63
4 14 0.14
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:7425082 original size:27 final size:27
Alignment explanation
Indices: 7425028--7425147 Score: 117
Period size: 27 Copynumber: 4.5 Consensus size: 27
7425018 AAAAATAAAG
* *
7425028 TAAT-AAATAATAA-AATAAAATAAAA
1 TAATAAAATAATAATAATATAATAATA
7425053 TAATAAAATAATAATAATATAATAATA
1 TAATAAAATAATAATAATATAATAATA
7425080 TAAT-AAATAATAAATAATATAATATAATA
1 TAATAAAATAAT-AATAATAT-A-ATAATA
* *
7425109 TAATATAATAAATAATAAAATAA-AA-A
1 TAATAAAAT-AATAATAATATAATAATA
*
7425135 TAA-AGAATAATAA
1 TAATAAAATAATAA
7425148 AAATTGGGTT
Statistics
Matches: 83, Mismatches: 5, Indels: 15
0.81 0.05 0.15
Matches are distributed among these distances:
24 5 0.06
25 8 0.10
26 20 0.24
27 24 0.29
28 2 0.02
29 11 0.13
30 10 0.12
31 3 0.04
ACGTcount: A:0.70, C:0.00, G:0.01, T:0.29
Consensus pattern (27 bp):
TAATAAAATAATAATAATATAATAATA
Found at i:7430861 original size:10 final size:9
Alignment explanation
Indices: 7430847--7430885 Score: 51
Period size: 10 Copynumber: 4.0 Consensus size: 9
7430837 TAAATTCTAA
7430847 AAAATAAAT
1 AAAATAAAT
7430856 ACAAATAAAT
1 A-AAATAAAT
7430866 AAAGATAAAT
1 AAA-ATAAAT
7430876 GAAAATAAAT
1 -AAAATAAAT
7430886 CTTAAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 3 0.11
10 21 0.78
11 3 0.11
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.21
Consensus pattern (9 bp):
AAAATAAAT
Found at i:7430935 original size:14 final size:13
Alignment explanation
Indices: 7430899--7430936 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
7430889 AAAATTAAAT
7430899 CTAAATAATTATC
1 CTAAATAATTATC
*
7430912 CTTAATAATTATC
1 CTAAATAATTATC
7430925 CTAATATAATTA
1 CTAA-ATAATTA
7430937 AACATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (13 bp):
CTAAATAATTATC
Found at i:7434254 original size:46 final size:46
Alignment explanation
Indices: 7434187--7434403 Score: 283
Period size: 46 Copynumber: 4.7 Consensus size: 46
7434177 TGGCAACCTG
* *
7434187 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* * *
7434233 TGTGTAAGACCATAGTTGAAAGATACCATGGCAACCTGATATGAGA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
*
7434279 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
* ** * *
7434325 AGAATAAGACTATGGTTGAAAGATACCATGGCAACATGACA-GAAAA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAA
* * * *
7434371 TGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TGTGTAAGACCATGGTTGAAAGATACCATGGCA
7434404 TCACGTCAAA
Statistics
Matches: 152, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 151 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
TGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAA
Found at i:7434383 original size:138 final size:130
Alignment explanation
Indices: 7434138--7434403 Score: 354
Period size: 138 Copynumber: 2.0 Consensus size: 130
7434128 AGTGTGCTCT
*
7434138 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGTGTAAGACCATGGT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
* * * *
7434203 TGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAAC
66 TGAAAGATACCATGGCAACATAACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
* *
7434268 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAG
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTG---TG---AG--TAAG
* *
7434333 ACTATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACAC
58 ACCATGGTTGAAAGATACCATGGCAACATAACATG-AAATGAGTAAGACCATAGTTGAAAGACAC
*
7434397 TATGGCA
122 CATGGCA
7434404 TCACGTCAAA
Statistics
Matches: 117, Mismatches: 10, Indels: 10
0.85 0.07 0.07
Matches are distributed among these distances:
130 47 0.40
133 2 0.02
136 1 0.01
137 1 0.01
138 66 0.56
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (130 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGTGAGTAAGACCATGGT
TGAAAGATACCATGGCAACATAACATGAAATGAGTAAGACCATAGTTGAAAGACACCATGGCAAC
Found at i:7437554 original size:81 final size:81
Alignment explanation
Indices: 7437397--7437560 Score: 224
Period size: 81 Copynumber: 2.0 Consensus size: 81
7437387 TCCCTCTTTT
* * * *
7437397 GTATCCAAGCTAACTTATTTGAGTAATAGAGATACTTTCACATTCTCTCAACTTTGGCATTATTC
1 GTATCCAAGCTAACTTATTTGAGTAATAAAGACACTTCCACATTCTCTCAACTTTGACATTATTC
* *
7437462 TTTTGTTCTAATCTAA
66 TCTTGTGCTAATCTAA
* *
7437478 GTATCCAAGCTAGCTTATTTGAGTAATAAAGACACTTCCACATTCTC-CTAACTCTT-ACATTCT
1 GTATCCAAGCTAACTTATTTGAGTAATAAAGACACTTCCACATTCTCTC-AACT-TTGACATTAT
7437541 TCTCTTGTGCTAATCTAA
64 TCTCTTGTGCTAATCTAA
7437559 GT
1 GT
7437561 TCCCTTTTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
80 1 0.01
81 70 0.96
82 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.11, T:0.40
Consensus pattern (81 bp):
GTATCCAAGCTAACTTATTTGAGTAATAAAGACACTTCCACATTCTCTCAACTTTGACATTATTC
TCTTGTGCTAATCTAA
Found at i:7442303 original size:21 final size:22
Alignment explanation
Indices: 7442274--7442320 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
7442264 CAGAAGGAGT
*
7442274 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
7442296 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
7442317 GAGT
1 GAGT
7442321 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:7444883 original size:21 final size:21
Alignment explanation
Indices: 7444859--7444898 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
7444849 CTAGAAAAAT
7444859 GAAGAAAAGAA-AAGAGGAAGA
1 GAAGAAAA-AATAAGAGGAAGA
7444880 GAAGAAAAAATAAGAGGAA
1 GAAGAAAAAATAAGAGGAA
7444899 ACTAAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (21 bp):
GAAGAAAAAATAAGAGGAAGA
Found at i:7446493 original size:14 final size:14
Alignment explanation
Indices: 7446474--7446518 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
7446464 TTAATTTTTT
7446474 TAATATTTATATTA
1 TAATATTTATATTA
7446488 TAATATTATATATT-
1 TAATATT-TATATTA
7446502 T-A-ATTT-TATTA
1 TAATATTTATATTA
7446513 TAATAT
1 TAATAT
7446519 ATAAACATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.15
11 2 0.07
12 4 0.15
13 3 0.11
14 8 0.30
15 6 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (14 bp):
TAATATTTATATTA
Found at i:7446513 original size:17 final size:17
Alignment explanation
Indices: 7446464--7446514 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 17
7446454 TACAAACAAC
*
7446464 TTAATTTTTTTA-ATAT
1 TTAATTTTATTATATAT
7446480 TTATATTATAATATTATATAT
1 TTA-ATT-T--TATTATATAT
7446501 TTAATTTTATTATA
1 TTAATTTTATTATA
7446515 ATATATAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
16 3 0.10
17 10 0.34
18 1 0.03
19 1 0.03
20 7 0.24
21 7 0.24
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTAATTTTATTATATAT
Found at i:7446519 original size:22 final size:21
Alignment explanation
Indices: 7446476--7446521 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
7446466 AATTTTTTTA
*
7446476 ATATTTATATTATAATATTAT
1 ATATTTATATTATAATAATAT
* *
7446497 ATATTTAATTTTATTATAATAT
1 ATATTT-ATATTATAATAATAT
7446519 ATA
1 ATA
7446522 AACATCAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATTTATATTATAATAATAT
Found at i:7446610 original size:19 final size:19
Alignment explanation
Indices: 7446570--7446611 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7446560 TTTTTAAATT
*
7446570 AATTTAATTTTATTATTCA
1 AATTTAATTTTATTATTAA
7446589 AATTTAATTTTATT-TTGAA
1 AATTTAATTTTATTATT-AA
7446608 AATT
1 AATT
7446612 AAACAAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
AATTTAATTTTATTATTAA
Found at i:7449524 original size:153 final size:153
Alignment explanation
Indices: 7449243--7449541 Score: 490
Period size: 153 Copynumber: 2.0 Consensus size: 153
7449233 GATCTATGGA
* * *
7449243 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAACTAAGTTAGATTTACCGGAGGGGAGAACGAGGT
1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
* * * *
7449308 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATATCGAAAGTGAGATTCAGGCG
66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
7449373 CTTGCTAAACTCAATCCAGGGCG
131 CTTGCTAAACTCAATCCAGGGCG
* *
7449396 TTCTTTGGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGTGAGAACAAGGT
1 TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
* *
7449461 TGGAGAAGAGTTGTTCCAAAAGTAAGGATAGAAAAGATGATAATGCCAAAAGTGAGATCCAGGCC
66 TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
*
7449526 CTTGTTAAACTCAATC
131 CTTGCTAAACTCAATC
7449542 TAAAGCTCCT
Statistics
Matches: 134, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
153 134 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.24
Consensus pattern (153 bp):
TTCTTTAGATTCCAACTTGGAGGCAGGTGTAAATAAGTTAGATATACCGGAGGGGAGAACAAGGT
TGGAGAAGAGTTGTTCCAAAAGCAAGGATAGAAAAGATGATAATACCAAAAGTGAGATCCAGGCC
CTTGCTAAACTCAATCCAGGGCG
Found at i:7456486 original size:3 final size:3
Alignment explanation
Indices: 7456478--7456512 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7456468 AATCAACTGT
7456478 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7456513 CAAGATTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:7464200 original size:4 final size:4
Alignment explanation
Indices: 7464191--7464223 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
7464181 GAACACCCAC
7464191 ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA A
1 ACAA ACAA ACAA ACAA ACAA ACAA ACAA ACAA A
7464224 GTCCAGCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
ACAA
Found at i:7465205 original size:11 final size:11
Alignment explanation
Indices: 7465189--7465218 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
7465179 ATAACCATAC
7465189 AAAAAAGAAAA
1 AAAAAAGAAAA
7465200 AAAAAAGAAAA
1 AAAAAAGAAAA
7465211 AAGAAAAG
1 AA-AAAAG
7465219 CACTTGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (11 bp):
AAAAAAGAAAA
Found at i:7467985 original size:11 final size:11
Alignment explanation
Indices: 7467969--7467993 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7467959 AATAATTTAA
7467969 AAAAAAAAAAG
1 AAAAAAAAAAG
7467980 AAAAAAAAAAG
1 AAAAAAAAAAG
7467991 AAA
1 AAA
7467994 GGAAATATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7473608 original size:16 final size:16
Alignment explanation
Indices: 7473571--7473633 Score: 72
Period size: 16 Copynumber: 3.8 Consensus size: 16
7473561 TATTTTTTCA
*
7473571 TATTATTACTATTATCAT
1 TATTATTA-TTTTAT-AT
7473589 TATTATTATTTTATAT
1 TATTATTATTTTATAT
*
7473605 TATTATTATGTTATATT
1 TATTATTATTTTATA-T
*
7473622 TAGTATTATTTT
1 TATTATTATTTT
7473634 TTTATATTAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
16 16 0.40
17 16 0.40
18 8 0.20
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTATTATTTTATAT
Found at i:7473631 original size:3 final size:3
Alignment explanation
Indices: 7473571--7473613 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
7473561 TATTTTTTCA
* *
7473571 TAT TAT TAC TAT TAT CAT TAT TAT TAT T-T TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7473614 GTTATATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
2 4 0.12
3 30 0.88
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:7473642 original size:33 final size:34
Alignment explanation
Indices: 7473561--7473642 Score: 89
Period size: 33 Copynumber: 2.4 Consensus size: 34
7473551 TATATATTGC
* *
7473561 TATTTTTTCATATTATTACTATTATCATTATTAT
1 TATTTTTTTATATTATTACTATTATCATTAGTAT
* *
7473595 TA-TTTTATATTATTATTA-TGTTAT-ATTTAGTAT
1 TATTTTTTTA-TATTATTACTATTATCA-TTAGTAT
7473628 TATTTTTTTATATTA
1 TATTTTTTTATATTA
7473643 CATTTTTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
32 1 0.03
33 23 0.57
34 16 0.40
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (34 bp):
TATTTTTTTATATTATTACTATTATCATTAGTAT
Found at i:7473749 original size:3 final size:3
Alignment explanation
Indices: 7473743--7473803 Score: 59
Period size: 3 Copynumber: 20.3 Consensus size: 3
7473733 TTTTTTTATC
* * * * * * *
7473743 TTA TTA TTA TTG CTG TTA TTA TTA TTA TTA TTA TTA GTA GTA ATA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7473791 TTA TTA TTA TTA T
1 TTA TTA TTA TTA T
7473804 ATACAATATT
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:7473816 original size:27 final size:28
Alignment explanation
Indices: 7473762--7473833 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
7473752 TTGCTGTTAT
* *
7473762 TATTATTATTATTAT-TAGTAGTAATAG
1 TATTATTATTATTATATAGCAATAATAG
*
7473789 TATTATTATTATTATATA-CAATATTAG
1 TATTATTATTATTATATAGCAATAATAG
* *
7473816 TGTATGTTA-TATTATATA
1 TAT-TATTATTATTATATA
7473834 TATACTTATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
27 32 0.84
28 6 0.16
ACGTcount: A:0.38, C:0.01, G:0.08, T:0.53
Consensus pattern (28 bp):
TATTATTATTATTATATAGCAATAATAG
Found at i:7474429 original size:20 final size:18
Alignment explanation
Indices: 7474404--7474442 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
7474394 CATATATGTA
7474404 TTTTTACATTATGTATATAT
1 TTTTTACA-TAT-TATATAT
*
7474424 TTTTTAGATATTATATAT
1 TTTTTACATATTATATAT
7474442 T
1 T
7474443 AAGTATTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 3 0.17
20 7 0.39
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.62
Consensus pattern (18 bp):
TTTTTACATATTATATAT
Found at i:7478608 original size:19 final size:18
Alignment explanation
Indices: 7478586--7478626 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
7478576 GCTTATTATG
7478586 TTAATTAAGTTAGATTAA
1 TTAATTAAGTTAGATTAA
* *
7478604 CTTAATTAATTTAGGTTAA
1 -TTAATTAAGTTAGATTAA
7478623 TTAA
1 TTAA
7478627 AGATTATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.41, C:0.02, G:0.10, T:0.46
Consensus pattern (18 bp):
TTAATTAAGTTAGATTAA
Found at i:7482795 original size:32 final size:30
Alignment explanation
Indices: 7482759--7482830 Score: 101
Period size: 30 Copynumber: 2.3 Consensus size: 30
7482749 TCTACGTCAT
7482759 GACTAAAATTCCAAAAT-TTTAAAAAATATAAA
1 GACTAAAATT--AAAATGTTTAAAAAATA-AAA
7482791 GACTAAAATTAAAATGTTTAAAAAATAAAA
1 GACTAAAATTAAAATGTTTAAAAAATAAAA
*
7482821 AACTAAAATT
1 GACTAAAATT
7482831 GATCAAATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
30 17 0.45
31 11 0.29
32 10 0.26
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (30 bp):
GACTAAAATTAAAATGTTTAAAAAATAAAA
Found at i:7497862 original size:20 final size:22
Alignment explanation
Indices: 7497837--7497877 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
7497827 TAAATATATT
7497837 AATATATTAT-TTA-ATTATAA
1 AATATATTATATTATATTATAA
7497857 AATATATTATATTATATTATA
1 AATATATTATATTATATTATA
7497878 TTATTATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 3 0.16
22 6 0.32
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATATTATATTATATTATAA
Found at i:7497875 original size:30 final size:28
Alignment explanation
Indices: 7497828--7497885 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 28
7497818 TTTATGTTTT
7497828 AAATATATTAATATATTAT-TTAATTATA
1 AAATATATTAATATATTATATT-ATTATA
7497856 AAATATATTATATTATATTATATTATTATA
1 AAATATATTA-A-TATATTATATTATTATA
7497886 TTATGTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 10 0.37
29 1 0.04
30 14 0.52
31 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (28 bp):
AAATATATTAATATATTATATTATTATA
Found at i:7498016 original size:11 final size:11
Alignment explanation
Indices: 7498000--7498033 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
7497990 TAAGTAAAAC
7498000 TATTATATTAT
1 TATTATATTAT
*
7498011 TATTATGTTAT
1 TATTATATTAT
7498022 TATTATTATTAT
1 TATTA-TATTAT
7498034 AATATAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (11 bp):
TATTATATTAT
Found at i:7498128 original size:19 final size:19
Alignment explanation
Indices: 7498090--7498131 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
7498080 TGAACGAAAC
*
7498090 AAAGAAAGGAAAGAAGGAA
1 AAAGAAAGGAAAGAAAGAA
7498109 AAAGAAA-GAAAGAAAAGAA
1 AAAGAAAGGAAAG-AAAGAA
7498128 AAAG
1 AAAG
7498132 GGAGAATTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (19 bp):
AAAGAAAGGAAAGAAAGAA
Found at i:7500725 original size:10 final size:10
Alignment explanation
Indices: 7500704--7500765 Score: 74
Period size: 10 Copynumber: 6.1 Consensus size: 10
7500694 AATGAAATTC
7500704 TAAACGATAAA
1 TAAA-GATAAA
7500715 TACAA-ATAAA
1 TA-AAGATAAA
7500725 TAAAGATAAA
1 TAAAGATAAA
*
7500735 TAAATATAAA
1 TAAAGATAAA
7500745 TAAAGATAAA
1 TAAAGATAAA
7500755 TGAAA-ATAAA
1 T-AAAGATAAA
7500765 T
1 T
7500766 CCTAGAATTA
Statistics
Matches: 46, Mismatches: 2, Indels: 7
0.84 0.04 0.13
Matches are distributed among these distances:
9 2 0.04
10 37 0.80
11 5 0.11
12 2 0.04
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (10 bp):
TAAAGATAAA
Found at i:7500732 original size:20 final size:19
Alignment explanation
Indices: 7500704--7500765 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 19
7500694 AATGAAATTC
7500704 TAAACGATAAATACAAATAAA
1 TAAA-GATAAATA-AAATAAA
7500725 TAAAGATAAATAAATATAAA
1 TAAAGATAAATAAA-ATAAA
7500745 TAAAGATAAATGAAAATAAA
1 TAAAGATAAAT-AAAATAAA
7500765 T
1 T
7500766 CCTAGAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.05
20 30 0.77
21 7 0.18
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (19 bp):
TAAAGATAAATAAAATAAA
Found at i:7501764 original size:33 final size:32
Alignment explanation
Indices: 7501739--7501806 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 32
7501729 TCATTTCGGG
7501739 AAAGCACATTTATGCATTGAAATTCAATATTCA
1 AAAGCACATTTATGCATTGAAATTC-ATATTCA
7501772 AAAGCACATTTATGCATTGAAATTCAATATTCA
1 AAAGCACATTTATGCATTGAAATTC-ATATTCA
7501805 AA
1 AA
7501807 CGAGACTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.09, T:0.32
Consensus pattern (32 bp):
AAAGCACATTTATGCATTGAAATTCATATTCA
Found at i:7514858 original size:40 final size:39
Alignment explanation
Indices: 7514814--7514985 Score: 186
Period size: 40 Copynumber: 4.3 Consensus size: 39
7514804 GGACTAAGAT
*
7514814 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAA-TCCGGGTTAAGTC
*
7514854 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTAAGTC
* * * *
7514894 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
7514934 CCGAAGGCA-TTGTGTGAGTTACTAAAACCAGGCTATA-TC
1 CCGAAGGCATTTGTGCGAGATAC-AAATCCGGGTTA-AGTC
7514973 CCGAAGGCATTTG
1 CCGAAGGCATTTG
7514986 AACGAGGAGC
Statistics
Matches: 113, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
39 30 0.27
40 80 0.71
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATCCGGGTTAAGTC
Done.