Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 240 of 295
Found at i:76979862 original size:13 final size:13
Alignment explanation
Indices: 76979846--76979894 Score: 91
Period size: 13 Copynumber: 3.8 Consensus size: 13
76979836 AGGAAATTTG
76979846 AAAAAAAAATTCA
1 AAAAAAAAATTCA
76979859 AAAAAAAAATTC-
1 AAAAAAAAATTCA
76979871 AAAAAAAAATTCA
1 AAAAAAAAATTCA
76979884 AAAAAAAAATT
1 AAAAAAAAATT
76979895 TTGAAGTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
12 12 0.34
13 23 0.66
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAAAAAAATTCA
Found at i:76979863 original size:12 final size:12
Alignment explanation
Indices: 76979846--76979891 Score: 83
Period size: 12 Copynumber: 3.8 Consensus size: 12
76979836 AGGAAATTTG
76979846 AAAAAAAAATTC
1 AAAAAAAAATTC
76979858 AAAAAAAAAATTC
1 -AAAAAAAAATTC
76979871 AAAAAAAAATTC
1 AAAAAAAAATTC
76979883 AAAAAAAAA
1 AAAAAAAAA
76979892 ATTTTGAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 21 0.64
13 12 0.36
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (12 bp):
AAAAAAAAATTC
Found at i:76979874 original size:25 final size:25
Alignment explanation
Indices: 76979846--76979894 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
76979836 AGGAAATTTG
76979846 AAAAAAAAATTCAAAAAAAAAATTC
1 AAAAAAAAATTCAAAAAAAAAATTC
76979871 AAAAAAAAATTCAAAAAAAAAATT
1 AAAAAAAAATTCAAAAAAAAAATT
76979895 TTGAAGTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (25 bp):
AAAAAAAAATTCAAAAAAAAAATTC
Found at i:76991200 original size:27 final size:27
Alignment explanation
Indices: 76991153--76991204 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
76991143 AAATCGTAGC
* *
76991153 TTCGAAAAAAAAAAGTTAAAAAAAAGT
1 TTCGAAAAAAAAAACTGAAAAAAAAGT
*
76991180 TTCGAAAAAAAAATCTGAAAAAAAA
1 TTCGAAAAAAAAAACTGAAAAAAAA
76991205 AAGAAGGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.67, C:0.06, G:0.10, T:0.17
Consensus pattern (27 bp):
TTCGAAAAAAAAAACTGAAAAAAAAGT
Found at i:76991205 original size:14 final size:13
Alignment explanation
Indices: 76991156--76991234 Score: 54
Period size: 14 Copynumber: 5.8 Consensus size: 13
76991146 TCGTAGCTTC
76991156 GAAAAAAAAAAGTT
1 GAAAAAAAAAA-TT
**
76991170 -AAAAAAAAGTTT
1 GAAAAAAAAAATT
76991182 CG-AAAAAAAAATCT
1 -GAAAAAAAAAAT-T
**
76991196 GAAAAAAAAAAGAA
1 GAAAAAAAAAA-TT
*
76991210 GGAAAAAAAAATT
1 GAAAAAAAAAATT
76991223 GCAAAAAAAAAA
1 G-AAAAAAAAAA
76991235 AAATTGCATA
Statistics
Matches: 49, Mismatches: 10, Indels: 12
0.69 0.14 0.17
Matches are distributed among these distances:
12 2 0.04
13 18 0.37
14 29 0.59
ACGTcount: A:0.73, C:0.04, G:0.11, T:0.11
Consensus pattern (13 bp):
GAAAAAAAAAATT
Found at i:76993557 original size:24 final size:25
Alignment explanation
Indices: 76993530--76993586 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
76993520 ATGAGTGATA
*
76993530 AAAAAAGAGA-GAGTGATTCAAAA-G
1 AAAAAAGAAACGAGTGA-TCAAAATG
*
76993554 -AAAAAGAAACGAGTGATGAAAATG
1 AAAAAAGAAACGAGTGATCAAAATG
76993578 AAAAAAGAA
1 AAAAAAGAA
76993587 TTTGTTTGTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
23 13 0.46
24 7 0.25
25 8 0.29
ACGTcount: A:0.63, C:0.04, G:0.23, T:0.11
Consensus pattern (25 bp):
AAAAAAGAAACGAGTGATCAAAATG
Found at i:77003175 original size:26 final size:26
Alignment explanation
Indices: 77003146--77003254 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
77003136 ATGGTACAAA
*
77003146 ATGATAATGGGTTAGGTACATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
* *
77003172 ATGATAATGGATTAGGTAAATATTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
77003198 ATGATAATGGGTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
*
77003224 ATGATAATGGTTTAGGTAAATGTTCC
1 ATGATAATGGGTTAGGTAAATGTTCC
77003250 ATGAT
1 ATGAT
77003255 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
ATGATAATGGGTTAGGTAAATGTTCC
Found at i:77004451 original size:8 final size:8
Alignment explanation
Indices: 77004438--77004474 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
77004428 AGATCGGCAC
77004438 AAGCCGAA
1 AAGCCGAA
77004446 AAGCCGAA
1 AAGCCGAA
*
77004454 AAACCGAA
1 AAGCCGAA
*
77004462 ATGCCGAA
1 AAGCCGAA
77004470 AAGCC
1 AAGCC
77004475 AGTATTTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.49, C:0.27, G:0.22, T:0.03
Consensus pattern (8 bp):
AAGCCGAA
Found at i:77004886 original size:27 final size:27
Alignment explanation
Indices: 77004846--77004985 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
77004836 AGGAAGCGTC
*
77004846 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
77004873 CTGGTGGCTCTGCCAC-ATAATCTG-T
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
77004898 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
77004926 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
77004953 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
77004980 CTGGTG
1 CTGGTG
77004986 ACTCCGTCAC
Statistics
Matches: 100, Mismatches: 7, Indels: 12
0.84 0.06 0.10
Matches are distributed among these distances:
25 1 0.01
26 30 0.30
27 67 0.67
28 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:77004923 original size:53 final size:54
Alignment explanation
Indices: 77004843--77004985 Score: 245
Period size: 53 Copynumber: 2.7 Consensus size: 54
77004833 TGAAGGAAGC
77004843 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATA-ATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
77004896 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
77004950 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
77004986 ACTCCGTCAC
Statistics
Matches: 86, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
53 55 0.64
54 31 0.36
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:77006281 original size:30 final size:30
Alignment explanation
Indices: 77006247--77006347 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
77006237 AGCTCACTCC
*
77006247 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCATTTTCAGCTCACGAGCTAAACCT
** * * * * *
77006277 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCATTTTCAGCTCACGAGCTAAACCT
* * *
77006307 CAGCTCAACTTT-AGCTCACGAGCTAAAACT
1 TAGCTC-ATTTTCAGCTCACGAGCTAAACCT
77006337 TAGCTCATTTT
1 TAGCTCATTTT
77006348 AGTTTAAACT
Statistics
Matches: 51, Mismatches: 19, Indels: 3
0.70 0.26 0.04
Matches are distributed among these distances:
29 4 0.08
30 44 0.86
31 3 0.06
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.32
Consensus pattern (30 bp):
TAGCTCATTTTCAGCTCACGAGCTAAACCT
Found at i:77007182 original size:19 final size:19
Alignment explanation
Indices: 77007160--77007244 Score: 57
Period size: 19 Copynumber: 4.3 Consensus size: 19
77007150 GCTCATATTC
77007160 AGCTCACGAGCTAAACCTT
1 AGCTCACGAGCTAAACCTT
* **
77007179 AGCTCAACTGCAGCTTAGGAGTTT
1 AGCTC-AC-G-AGC-TA-AACCTT
* *
77007203 AGC-CTC-AGCTAAACTTT
1 AGCTCACGAGCTAAACCTT
*
77007220 AGCTCACGAGCTAAAGCTT
1 AGCTCACGAGCTAAACCTT
77007239 AGCTCA
1 AGCTCA
77007245 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 14
0.68 0.12 0.19
Matches are distributed among these distances:
17 7 0.14
18 4 0.08
19 23 0.46
20 2 0.04
21 1 0.02
22 4 0.08
23 3 0.06
24 6 0.12
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (19 bp):
AGCTCACGAGCTAAACCTT
Found at i:77007182 original size:30 final size:31
Alignment explanation
Indices: 77007148--77007245 Score: 85
Period size: 30 Copynumber: 3.3 Consensus size: 31
77007138 AGCTCACTCC
77007148 TAGCTCATA-TTCAGCTCACGAGCTAAACCT
1 TAGCTCATACTTCAGCTCACGAGCTAAACCT
* * * * * *
77007178 TAGCTCA-ACTGCAGCTTAGGAGTTTAGCCT
1 TAGCTCATACTTCAGCTCACGAGCTAAACCT
* * * *
77007208 CAGCT-AAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCATACTTCAGCTCACGAGCTAAACCT
77007238 TAGCTCAT
1 TAGCTCAT
77007246 TTTAGTTTAA
Statistics
Matches: 48, Mismatches: 17, Indels: 5
0.69 0.24 0.07
Matches are distributed among these distances:
29 2 0.04
30 45 0.94
31 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (31 bp):
TAGCTCATACTTCAGCTCACGAGCTAAACCT
Found at i:77036093 original size:55 final size:52
Alignment explanation
Indices: 77035993--77036179 Score: 164
Period size: 55 Copynumber: 3.5 Consensus size: 52
77035983 TTAAGGATAC
* * * * *
77035993 CATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTC-TAAGGAAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGC-ATTGATAA-G-TTCATAAGGAAAGG-AAT
77036048 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGG--T
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-ATAAGG-AAAGGAAT
* * * * * *
77036101 CCGATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATAC
1 -C-ATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGAAAGGA-AT
77036156 CATGTAAGACCATGTCAAGACATG
1 CATGTAAGACCATGTCAAGACATG
77036180 ACAATGGTAA
Statistics
Matches: 110, Mismatches: 13, Indels: 20
0.77 0.09 0.14
Matches are distributed among these distances:
52 6 0.05
53 30 0.27
54 9 0.08
55 60 0.55
56 5 0.05
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (52 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATAAGGAAAGGAAT
Found at i:77036191 original size:108 final size:110
Alignment explanation
Indices: 77035994--77036192 Score: 287
Period size: 108 Copynumber: 1.8 Consensus size: 110
77035984 TAAGGATACC
*
77035994 ATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTCTAAGGAAAGGAAATCATGTAAGACC
1 ATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTCTAAGGAAAGGAAACCATGTAAGACC
* *
77036059 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCG
66 ATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTCCG
* * * * *
77036104 ATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAGAC
1 ATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTC-TAAGGAAAGGAAACCATGTAAGAC
*
77036166 CATGTCAAGACATGACAATGGTAAGTT
65 CATGTCAAGACATGACAATGATAAGTT
77036193 TCAAAAGGAT
Statistics
Matches: 79, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.58
109 6 0.08
110 24 0.30
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
ATGTAAGACCATGCCAAGGCATGACAATCGGTAAGGTTTCTAAGGAAAGGAAACCATGTAAGACC
ATGTCAAGACATGACAATGATAAGTTACTATAAGGCAAAGGTCCG
Found at i:77036345 original size:23 final size:24
Alignment explanation
Indices: 77036308--77036352 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
77036298 AAGGTAAAGT
**
77036308 AAGGTAAGATGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
77036331 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
77036353 GAAGAGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:77036452 original size:16 final size:16
Alignment explanation
Indices: 77036431--77036461 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77036421 ATAAATTTGA
77036431 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
77036447 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
77036462 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:77039321 original size:39 final size:39
Alignment explanation
Indices: 77039275--77039443 Score: 248
Period size: 39 Copynumber: 4.3 Consensus size: 39
77039265 GGTCTTTAAC
* * * *
77039275 CCGGATATTTTTCCAGCACATAGCCTGCAGACCTCAAGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
** * *
77039314 CTAGATATATTTCTAGCATATAGCCTGCGGACTTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
77039353 CCGGATATATTTCCAGCATATAGCCTACGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
77039392 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
1 CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
*
77039431 CTGGATATATTTC
1 CCGGATATATTTC
77039444 TAGTCTCATA
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (39 bp):
CCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGT
Found at i:77043803 original size:28 final size:28
Alignment explanation
Indices: 77043746--77043803 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
77043736 AGCCATGGGT
* *
77043746 AAATATGATCGACACAGAGTCATCAATA
1 AAATATGATAGACACAGAGCCATCAATA
* *
77043774 AAATATGATAGGCACATAGCCA-CAAGTA
1 AAATATGATAGACACAGAGCCATCAA-TA
77043802 AA
1 AA
77043804 TACAATTGGC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 3 0.12
28 22 0.88
ACGTcount: A:0.48, C:0.17, G:0.16, T:0.19
Consensus pattern (28 bp):
AAATATGATAGACACAGAGCCATCAATA
Found at i:77044255 original size:27 final size:27
Alignment explanation
Indices: 77044223--77044309 Score: 81
Period size: 27 Copynumber: 3.3 Consensus size: 27
77044213 CAAAACAGTC
** *
77044223 ATTTTACTTTACAGGGGTATTTCT-GTA
1 ATTTTACACTACAAGGGTATTT-TGGTA
77044250 ATTTTACACTACAAGGGTATTTTGGTA
1 ATTTTACACTACAAGGGTATTTTGGTA
* * *
77044277 ATTTTACA-AAC-TGGGTCATTTTGATA
1 ATTTTACACTACAAGGGT-ATTTTGGTA
77044303 ATTTTAC
1 ATTTTAC
77044310 TAACAGGGGG
Statistics
Matches: 52, Mismatches: 6, Indels: 5
0.83 0.10 0.08
Matches are distributed among these distances:
25 4 0.08
26 18 0.35
27 30 0.58
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTTGGTA
Found at i:77044330 original size:27 final size:26
Alignment explanation
Indices: 77044233--77044473 Score: 193
Period size: 27 Copynumber: 9.1 Consensus size: 26
77044223 ATTTTACTTT
*
77044233 ACAGGGGTATTTCTG-TAATTTTACACT
1 ACAGGGGTATTTC-GATAATTTTACA-A
* * *
77044260 ACAAGGGTATTTTGGTAATTTTACAA
1 ACAGGGGTATTTCGATAATTTTACAA
* * *
77044286 AC-TGGGTCATTTTGATAATTTTACTA
1 ACAGGGGT-ATTTCGATAATTTTACAA
77044312 ACAGGGGGTATTTCGATAATTTTACAA
1 ACA-GGGGTATTTCGATAATTTTACAA
* * *
77044339 ATCGGGGGTA-TTCGGTAAGTTTACAA
1 A-CAGGGGTATTTCGATAATTTTACAA
* *
77044365 ACTGGAGGTATTTCGGTAATTTTACAA
1 ACAGG-GGTATTTCGATAATTTTACAA
* * * *
77044392 ACTA-AGGCATTTTGGTAATTTTACAA
1 AC-AGGGGTATTTCGATAATTTTACAA
*
77044418 ACCGGGGGTATTTCGATAATTTTACAA
1 A-CAGGGGTATTTCGATAATTTTACAA
* * *
77044445 ACTAAGGTTATTTCAATAATTTTACAA
1 AC-AGGGGTATTTCGATAATTTTACAA
77044472 AC
1 AC
77044474 CGAGGTCTTA
Statistics
Matches: 176, Mismatches: 27, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
25 7 0.04
26 61 0.35
27 103 0.59
28 5 0.03
ACGTcount: A:0.32, C:0.12, G:0.19, T:0.37
Consensus pattern (26 bp):
ACAGGGGTATTTCGATAATTTTACAA
Found at i:77044448 original size:53 final size:54
Alignment explanation
Indices: 77044264--77044475 Score: 225
Period size: 53 Copynumber: 4.0 Consensus size: 54
77044254 TACACTACAA
* * * * * *
77044264 GGGTATTTTGGTAATTTTACAAACT-GGGTCATTTTGATAATTTTACTAACAGG
1 GGGTATTTCGATAATTTTACAAACTAAGGTCATTTCGATAATTTTACAAACCGG
*** * * *
77044317 GGGTATTTCGATAATTTTACAAATCGGGGGT-A-TTCGGTAAGTTTACAAACTGG
1 GGGTATTTCGATAATTTTACAAA-CTAAGGTCATTTCGATAATTTTACAAACCGG
* * * *
77044370 AGGTATTTCGGTAATTTTACAAACTAAGG-CATTTTGGTAATTTTACAAACCGG
1 GGGTATTTCGATAATTTTACAAACTAAGGTCATTTCGATAATTTTACAAACCGG
* *
77044423 GGGTATTTCGATAATTTTACAAACTAAGGTTATTTCAATAATTTTACAAACCG
1 GGGTATTTCGATAATTTTACAAACTAAGGTCATTTCGATAATTTTACAAACCG
77044476 AGGTCTTAAC
Statistics
Matches: 132, Mismatches: 22, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 103 0.78
54 21 0.16
55 4 0.03
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTACAAACTAAGGTCATTTCGATAATTTTACAAACCGG
Found at i:77044479 original size:106 final size:106
Alignment explanation
Indices: 77044265--77044479 Score: 274
Period size: 106 Copynumber: 2.0 Consensus size: 106
77044255 ACACTACAAG
* * *
77044265 GGTATTTTGGTAATTTTACAAACTGGGTCATTTTGATAATTTTACTAACAGGGGGTATTTCGATA
1 GGTATTTCGGTAATTTTACAAACTAGGTCATTTTGATAATTTTACAAACAGGGGGTATTTCGATA
** ** *
77044330 ATTTTACAAATCGGGGGTATTCGGTAAGTTTACAAACTGGA
66 ATTTTACAAATCAAGGGTATTCAATAAGTTTACAAACTCGA
* *
77044371 GGTATTTCGGTAATTTTACAAACTAAGG-CATTTTGGTAATTTTACAAACCGGGGGTATTTCGAT
1 GGTATTTCGGTAATTTTACAAACT-AGGTCATTTTGATAATTTTACAAACAGGGGGTATTTCGAT
* *
77044435 AATTTTACAAA-CTAAGGTTATTTCAATAATTTTACAAAC-CGA
65 AATTTTACAAATC-AAGGGTA-TTCAATAAGTTTACAAACTCGA
77044477 GGT
1 GGT
77044480 CTTAACAACC
Statistics
Matches: 94, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
105 1 0.01
106 76 0.81
107 17 0.18
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (106 bp):
GGTATTTCGGTAATTTTACAAACTAGGTCATTTTGATAATTTTACAAACAGGGGGTATTTCGATA
ATTTTACAAATCAAGGGTATTCAATAAGTTTACAAACTCGA
Found at i:77046540 original size:27 final size:27
Alignment explanation
Indices: 77046509--77046616 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 27
77046499 AATCTCATAT
* * * *
77046509 CTGTAGGCTAGTATTATTGAAATATCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
77046536 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
* *
77046563 CTGTAGGATAGAATTACTGAAATGCCC
1 CTGTAGGGTAGAATTACTGAAATACCC
*
77046590 CTGTAGGGTAGAATTATTGAAATACCC
1 CTGTAGGGTAGAATTACTGAAATACCC
77046617 TTGATTTACA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 72 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATACCC
Found at i:77046632 original size:54 final size:52
Alignment explanation
Indices: 77046521--77046696 Score: 133
Period size: 54 Copynumber: 3.3 Consensus size: 52
77046511 GTAGGCTAGT
* * * * ** * *
77046521 ATTATTGAAATATCCCTGTAGGGTAGAATTACTGAAATGCCCCTGTAGGATAGA
1 ATTACTGAAATA-CCCTGTAGGGTAGAATTATTGAAATACCCTTGT-TTACAAA
*
77046575 ATTACTGAAATGCCCCTGTAGGGTAGAATTATTGAAATACCCTTGATTTACAAA
1 ATTACTGAAAT-ACCCTGTAGGGTAGAATTATTGAAATACCCTTG-TTTACAAA
* * *
77046629 ATTATTGAAATACCCT-T-GGTTTACAAAATTATTG-AATACCCTTGGTTTACAAA
1 ATTACTGAAATACCCTGTAGG-GT--AGAATTATTGAAATACCCTT-GTTTACAAA
**
77046682 ATTACCAAAATACCC
1 ATTACTGAAATACCC
77046697 CTGATTAGAA
Statistics
Matches: 100, Mismatches: 16, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
51 2 0.02
52 2 0.02
53 33 0.33
54 62 0.62
55 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (52 bp):
ATTACTGAAATACCCTGTAGGGTAGAATTATTGAAATACCCTTGTTTACAAA
Found at i:77046673 original size:26 final size:27
Alignment explanation
Indices: 77046601--77046685 Score: 154
Period size: 27 Copynumber: 3.2 Consensus size: 27
77046591 TGTAGGGTAG
*
77046601 AATTATTGAAATACCCTTGATTTACAA
1 AATTATTGAAATACCCTTGGTTTACAA
77046628 AATTATTGAAATACCCTTGGTTTACAA
1 AATTATTGAAATACCCTTGGTTTACAA
77046655 AATTATTG-AATACCCTTGGTTTACAA
1 AATTATTGAAATACCCTTGGTTTACAA
77046681 AATTA
1 AATTA
77046686 CCAAAATACC
Statistics
Matches: 57, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
26 23 0.40
27 34 0.60
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.38
Consensus pattern (27 bp):
AATTATTGAAATACCCTTGGTTTACAA
Found at i:77046709 original size:27 final size:27
Alignment explanation
Indices: 77046679--77046884 Score: 209
Period size: 27 Copynumber: 7.7 Consensus size: 27
77046669 CTTGGTTTAC
* *
77046679 AAAATTACCAAAATACCCCTGATTAGA
1 AAAATTACCAAAATACCCCTGATTTGT
*
77046706 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
77046733 AAAATTGCCAAAATACCCCTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * **
77046760 GAAATTGA-CAAAATACCCTTAACATGT
1 AAAATT-ACCAAAATACCCCTGATTTGT
* *
77046787 AAAATTACTAAAATA-CCTTGATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
77046813 AAAATTACCAAAATACCCCTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
77046840 AAAATTATCGAAATACCCTTGATTTAT
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
77046867 AGATTTACCAAAACACCC
1 AAAATTACCAAAATACCC
77046885 TTGTAGGGTG
Statistics
Matches: 145, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
26 23 0.16
27 122 0.84
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:77046710 original size:53 final size:52
Alignment explanation
Indices: 77046601--77046756 Score: 150
Period size: 54 Copynumber: 2.9 Consensus size: 52
77046591 TGTAGGGTAG
* *** * * *
77046601 AATTATTGAAATACCCTTGATTTACAAAATTATTGAAATACCCTTGGTTTACAA
1 AATTATTG-AATACCCTTGGTTTACAAAATTACCAAAATACCCCT-GATTAAAA
77046655 AATTATTGAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTAGAAA
1 AATTATTGAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTA-AAA
*** * ** *
77046708 AATTACCAAAATACCCCTGGTTTGTAAAATTGCCAAAATACCCCTGATT
1 AATTA-TTGAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATT
77046757 TGTGAAATTG
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
52 4 0.05
53 38 0.44
54 44 0.51
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (52 bp):
AATTATTGAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGATTAAAA
Found at i:77046845 original size:80 final size:81
Alignment explanation
Indices: 77046706--77046859 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 81
77046696 CCTGATTAGA
* * *
77046706 AAAATTACCAAAATACCCCTGGTTTGTAAAATTGCCAAAATACCCCTGATTTGTGAAATTGA-CA
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATT-ATCA
77046770 AAATACCCTTAACATGT
65 AAATACCCTTAACATGT
* * *
77046787 AAAATTACTAAAATA-CCTTGATTTGTAAAATTACCAAAATACCCCTAATTTG-GAAAATTATCG
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTG-AAATTATCA
77046850 AAATACCCTT
65 AAATACCCTT
77046860 GATTTATAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
79 2 0.03
80 49 0.75
81 14 0.22
ACGTcount: A:0.42, C:0.19, G:0.09, T:0.30
Consensus pattern (81 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTATCAA
AATACCCTTAACATGT
Found at i:77046879 original size:107 final size:108
Alignment explanation
Indices: 77046679--77046886 Score: 258
Period size: 107 Copynumber: 1.9 Consensus size: 108
77046669 CTTGGTTTAC
** * *
77046679 AAAATTACCAAAATACCCCTGATTAGAAAAATTACCAAAATACCCCTGGTTTGTAAAATTGCCAA
1 AAAATTACCAAAATACCCCTGATTAGAAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
* *
77046744 AATACCCCTGATTTGTGAAATTGACAAAATACCCTTAACATGT
66 AATACCCCTGATTTATGAAATTGACAAAACACCCTTAACATGT
* * * * * *
77046787 AAAATTACTAAAATA-CCTTGATTTGTAAAATTACCAAAATACCCCTAATTTGGAAAATTATCGA
1 AAAATTACCAAAATACCCCTGATTAGAAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
* * *
77046851 AATACCCTTGATTTAT-AGATTTACCAAAACACCCTT
66 AATACCCCTGATTTATGAAATTGA-CAAAACACCCTT
77046887 GTAGGGTGAA
Statistics
Matches: 84, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
106 5 0.06
107 65 0.77
108 14 0.17
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (108 bp):
AAAATTACCAAAATACCCCTGATTAGAAAAATTACCAAAATACCCCTAATTTGGAAAATTACCAA
AATACCCCTGATTTATGAAATTGACAAAACACCCTTAACATGT
Found at i:77047371 original size:22 final size:23
Alignment explanation
Indices: 77047322--77047372 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
77047312 AATTATTCTG
*
77047322 ATTATGGCTTTGAGCCAACCTAC
1 ATTATGGCTCTGAGCCAACCTAC
*
77047345 A-TATGGCTCTGTGCCAACCTA-
1 ATTATGGCTCTGAGCCAACCTAC
77047366 ATTATGG
1 ATTATGG
77047373 TTGTGTCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.92
23 1 0.04
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (23 bp):
ATTATGGCTCTGAGCCAACCTAC
Found at i:77048860 original size:21 final size:21
Alignment explanation
Indices: 77048835--77048895 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
77048825 CCCAACCCAT
*
77048835 GCATATAATGAGTATATCATA
1 GCATATAATGAGCATATCATA
* *
77048856 GCATATCATGTGCATATCATA
1 GCATATAATGAGCATATCATA
* * *
77048877 ACATATCATGTGCATATCA
1 GCATATAATGAGCATATCA
77048896 CGTCCTATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (21 bp):
GCATATAATGAGCATATCATA
Found at i:77048870 original size:11 final size:11
Alignment explanation
Indices: 77048834--77048908 Score: 57
Period size: 10 Copynumber: 7.1 Consensus size: 11
77048824 ACCCAACCCA
*
77048834 TGCATATAATG
1 TGCATATCATG
* *
77048845 AGTATATCAT-
1 TGCATATCATG
*
77048855 AGCATATCATG
1 TGCATATCATG
77048866 TGCATATCAT-
1 TGCATATCATG
**
77048876 AACATATCATG
1 TGCATATCATG
*
77048887 TGCATATCACG
1 TGCATATCATG
*
77048898 T-CCTATCATG
1 TGCATATCATG
77048908 T
1 T
77048909 ATAACAATAT
Statistics
Matches: 50, Mismatches: 12, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
10 25 0.50
11 25 0.50
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (11 bp):
TGCATATCATG
Found at i:77048908 original size:21 final size:21
Alignment explanation
Indices: 77048848--77048896 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
77048838 TATAATGAGT
* *
77048848 ATATCATAGCATATCATGTGC
1 ATATCACAACATATCATGTGC
*
77048869 ATATCATAACATATCATGTGC
1 ATATCACAACATATCATGTGC
77048890 ATATCAC
1 ATATCAC
77048897 GTCCTATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (21 bp):
ATATCACAACATATCATGTGC
Found at i:77049082 original size:27 final size:27
Alignment explanation
Indices: 77049052--77049145 Score: 143
Period size: 27 Copynumber: 3.4 Consensus size: 27
77049042 ATCTCGATAA
77049052 TTCTACCCTACAGGGGTATTTCGGTAT
1 TTCTACCCTACAGGGGTATTTCGGTAT
* *
77049079 TTCTACCCTACAAGGGTATTTCGATAAT
1 TTCTACCCTACAGGGGTATTTCGGT-AT
* *
77049107 TTCTATCCTACAGGGGTATTTCGGTAA
1 TTCTACCCTACAGGGGTATTTCGGTAT
77049134 TTCTACCCTACA
1 TTCTACCCTACA
77049146 ATAGTGCTTC
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 35 0.59
28 24 0.41
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (27 bp):
TTCTACCCTACAGGGGTATTTCGGTAT
Found at i:77049109 original size:28 final size:28
Alignment explanation
Indices: 77049022--77049146 Score: 141
Period size: 27 Copynumber: 4.6 Consensus size: 28
77049012 GGCAAAATGG
* * * *
77049022 TAATTT-TACCCCACAAAGTTATCTCGA
1 TAATTTCTACCCTACAAGGGTATTTCGA
* *
77049049 TAA-TTCTACCCTACAGGGGTATTTCGG
1 TAATTTCTACCCTACAAGGGTATTTCGA
77049076 T-ATTTCTACCCTACAAGGGTATTTCGA
1 TAATTTCTACCCTACAAGGGTATTTCGA
* * *
77049103 TAATTTCTATCCTACAGGGGTATTTCGG
1 TAATTTCTACCCTACAAGGGTATTTCGA
77049131 TAA-TTCTACCCTACAA
1 TAATTTCTACCCTACAA
77049147 TAGTGCTTCG
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.04
27 53 0.65
28 26 0.32
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.35
Consensus pattern (28 bp):
TAATTTCTACCCTACAAGGGTATTTCGA
Found at i:77049157 original size:55 final size:55
Alignment explanation
Indices: 77049020--77049163 Score: 177
Period size: 55 Copynumber: 2.6 Consensus size: 55
77049010 GGGGCAAAAT
* *
77049020 GGTAATTTTACCCCACAA-AGTTA-TCTCGATAA-TTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGAG-TACT-TCGATAATTTCTACCCTACAGGGGTATTTC
* * * *
77049074 GGTATTTCTACCCTACAAGGGTATTTCGATAATTTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGAGTACTTCGATAATTTCTACCCTACAGGGGTATTTC
* *
77049129 GGTAATTCTACCCTACAATAGTGCTTCGATAATTT
1 GGTAATTCTACCCTACAAGAGTACTTCGATAATTT
77049164 TGTAAATCGA
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
54 24 0.31
55 53 0.69
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (55 bp):
GGTAATTCTACCCTACAAGAGTACTTCGATAATTTCTACCCTACAGGGGTATTTC
Found at i:77049521 original size:27 final size:27
Alignment explanation
Indices: 77049201--77049514 Score: 387
Period size: 27 Copynumber: 11.6 Consensus size: 27
77049191 TATAAATCGG
* ** *
77049201 GGGTACTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * ****
77049228 GGGTATTTCAGTAATTTTATAAGTTGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * *
77049255 GGGTATTTCAGTAATTTCACAAATC-A
1 GGGTATTTTGGTAATTTTACAAACCAA
* *
77049281 GAGGTATTTTGGTAATTTTACAAACTAG
1 G-GGTATTTTGGTAATTTTACAAACCAA
* *
77049309 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77049336 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77049363 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77049390 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77049417 GGGTATTTTGGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77049444 GGGTATTTTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
*
77049471 TGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
77049498 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
77049515 GGTAAACTAA
Statistics
Matches: 256, Mismatches: 29, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
26 2 0.01
27 253 0.99
28 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:77055911 original size:47 final size:47
Alignment explanation
Indices: 77055848--77055952 Score: 174
Period size: 47 Copynumber: 2.2 Consensus size: 47
77055838 CCCTTCGGGA
* * *
77055848 CTTATCACATTTATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCAGC
*
77055895 CTTATCACATATATACACTTTCTCATCCATCACATTGGCCATTCAGC
1 CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCAGC
77055942 CTTATCACATA
1 CTTATCACATA
77055953 ATTAATACTA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATCCATCACATTGGCCATTCAGC
Found at i:77060735 original size:39 final size:39
Alignment explanation
Indices: 77060618--77060879 Score: 320
Period size: 39 Copynumber: 6.6 Consensus size: 39
77060608 GCTCCTCGTT
* * *
77060618 CAAATGCCTTCGGGACATAGCTCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
77060658 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
77060698 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
77060737 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
77060776 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
77060815 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
77060856 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
77060880 CATCATTCAA
Statistics
Matches: 203, Mismatches: 12, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 60 0.30
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:77068765 original size:39 final size:39
Alignment explanation
Indices: 77068644--77068904 Score: 293
Period size: 39 Copynumber: 6.6 Consensus size: 39
77068634 GCTCCTCGTT
* *
77068644 CAAATGCCTTCGGGACATAGCCCGG-CTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
77068684 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
77068724 CAAATGCCTTCGGGCTTAGCTCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
77068763 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
77068802 CAAATGCCTTCGGGCTTAGCCC-GAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * * *
77068840 CAAATGCCTTTGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
77068881 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
77068905 CATCATTCAA
Statistics
Matches: 195, Mismatches: 18, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
38 28 0.14
39 105 0.54
40 52 0.27
41 10 0.05
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:77073379 original size:30 final size:30
Alignment explanation
Indices: 77073312--77073380 Score: 93
Period size: 30 Copynumber: 2.3 Consensus size: 30
77073302 TACACAGGTA
77073312 GACACACGGACGTGTGTCTAGGCCGTATAT
1 GACACACGGACGTGTGTCTAGGCCGTATAT
* * * * *
77073342 GAAACACGGGCTTGTGTCTAGGCCGTGTGT
1 GACACACGGACGTGTGTCTAGGCCGTATAT
77073372 GACACACGG
1 GACACACGG
77073381 TCTGCCCCAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.22, C:0.23, G:0.33, T:0.22
Consensus pattern (30 bp):
GACACACGGACGTGTGTCTAGGCCGTATAT
Found at i:77076425 original size:40 final size:40
Alignment explanation
Indices: 77076310--77076474 Score: 212
Period size: 40 Copynumber: 4.2 Consensus size: 40
77076300 AACCCAAGTA
* * *
77076310 CCTTC-GGAATTTAG-CCGGATAT-AGCAACTCGCACGAATG
1 CCTTCGGGAA-TTAGCCCGGATATAATC-ACTAGCACAAATG
* * * *
77076349 CCTTCGGG-ATTATCTCGGACATAGTCACTAGCACAAATG
1 CCTTCGGGAATTAGCCCGGATATAATCACTAGCACAAATG
77076388 CCTTCGGGAATTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGAATTAGCCCGGATATAATCACTAGCACAAATG
*
77076428 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGAATTAGCCCGGATATAATCACTAGCACAAATG
77076468 CCTTCGG
1 CCTTCGG
77076475 ATCTTAGTCC
Statistics
Matches: 110, Mismatches: 12, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
38 3 0.03
39 31 0.28
40 76 0.69
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGAATTAGCCCGGATATAATCACTAGCACAAATG
Found at i:77083167 original size:40 final size:40
Alignment explanation
Indices: 77083084--77083386 Score: 387
Period size: 40 Copynumber: 7.6 Consensus size: 40
77083074 TTGAATGCTG
* * * * * *
77083084 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
77083124 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
77083164 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
77083204 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77083244 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
77083284 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
77083324 TCCGAGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
77083363 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
77083387 TGAACGAGGA
Statistics
Matches: 239, Mismatches: 21, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
39 34 0.14
40 197 0.82
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:77088235 original size:23 final size:23
Alignment explanation
Indices: 77088150--77088312 Score: 95
Period size: 23 Copynumber: 6.9 Consensus size: 23
77088140 AGACTCACTA
*
77088150 CAGCTCATATGAGCTTACCGATATAT
1 CAGCTCGTATGAGCTTACCG-T-T-T
* *
77088176 CAGCTCGTAAGAGCTTACAGTTT
1 CAGCTCGTATGAGCTTACCGTTT
* *
77088199 CAACTCAT-TGGAGCTTACCGTTT
1 CAGCTCGTAT-GAGCTTACCGTTT
*
77088222 CAGCTCGTATGAGCTT-GC-TATT
1 CAGCTCGTATGAGCTTACCGT-TT
77088244 CAGCTCGATAT-AGCTTA-CGATTT
1 CAGCTCG-TATGAGCTTACCG-TTT
* *
77088267 CAGCTC-AATAGAGCTTACTGTTCAT
1 CAGCTCGTAT-GAGCTTACCGTT--T
* *
77088292 CAGCTCAGGAGGAGCTTACCG
1 CAGCTC-GTATGAGCTTACCG
77088313 ATCATAGCTT
Statistics
Matches: 108, Mismatches: 15, Indels: 28
0.72 0.10 0.19
Matches are distributed among these distances:
21 3 0.03
22 16 0.15
23 50 0.46
24 4 0.04
25 8 0.07
26 26 0.24
27 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (23 bp):
CAGCTCGTATGAGCTTACCGTTT
Found at i:77091290 original size:28 final size:28
Alignment explanation
Indices: 77091222--77091403 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
77091212 CATGAGATTG
* * * * *
77091222 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77091251 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77091279 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77091307 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
77091335 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77091363 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77091390 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77091404 GACTTAATAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 17 0.12
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77099564 original size:27 final size:28
Alignment explanation
Indices: 77099398--77099551 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
77099388 CATGAGATTG
* * * * *
77099398 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77099427 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77099455 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77099483 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77099511 GCACTAAGTGTGCAAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77099538 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77099552 GACTTAATAT
Statistics
Matches: 117, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 23 0.20
28 77 0.66
29 17 0.15
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77110523 original size:39 final size:38
Alignment explanation
Indices: 77110384--77110511 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 38
77110374 CGGGACTTTA
*
77110384 AGCCCGGATATAATACCAGCACAAAGCCTTCGGGACTT
1 AGCCCGGATATAATACCAGCACAAAGCCTTCAGGACTT
*
77110422 AGCCCGGATATAATACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAATACCAGCAC-AAAGCCTTCAGGACTT
* *
77110461 AGCCCGGATATAACACCAGCACAAACGCCTTCAGGAATT
1 AGCCCGGATATAATACCAGCACAAA-GCCTTCAGGACTT
77110500 AGCCCGGATATA
1 AGCCCGGATATA
77110512 TATCTCACAC
Statistics
Matches: 83, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
38 24 0.29
39 59 0.71
ACGTcount: A:0.33, C:0.29, G:0.20, T:0.18
Consensus pattern (38 bp):
AGCCCGGATATAATACCAGCACAAAGCCTTCAGGACTT
Found at i:77117072 original size:39 final size:38
Alignment explanation
Indices: 77116966--77117120 Score: 184
Period size: 39 Copynumber: 4.0 Consensus size: 38
77116956 CAAATTCAAT
* * * *
77116966 CACCACCACAAAGCATGCGGGACTTTAAGCCCAGATATAA
1 CACCAGCACAAAGCCTTCGGGAC-TT-AGCCCGGATATAA
* *
77117006 TACCAGCACAAAGCCTTCGGGACTTAGCCCGGCTATAA
1 CACCAGCACAAAGCCTTCGGGACTTAGCCCGGATATAA
*
77117044 CACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAA
* * *
77117083 CACCAGCACAAACGCCTTCAGGAATTAGCCTGGATATA
1 CACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATA
77117121 TATCTCACAC
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 21 0.21
39 60 0.60
40 19 0.19
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.17
Consensus pattern (38 bp):
CACCAGCACAAAGCCTTCGGGACTTAGCCCGGATATAA
Found at i:77123233 original size:79 final size:82
Alignment explanation
Indices: 77123122--77123306 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
77123112 GCTACTCGTT
* *
77123122 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
77123185 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
77123202 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
77123265 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
77123282 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77123307 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:77123306 original size:40 final size:40
Alignment explanation
Indices: 77123103--77123306 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
77123093 CGGAATTTAA
** *
77123103 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77123143 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
77123183 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
77123222 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
77123262 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
77123302 CCGGA
1 CCGGA
77123307 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:77128546 original size:40 final size:39
Alignment explanation
Indices: 77128502--77128726 Score: 263
Period size: 40 Copynumber: 5.7 Consensus size: 39
77128492 GCCACTAGCT
* *
77128502 CAAATGCCTTCGGGATTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
77128542 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* *
77128581 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
77128621 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * * ** *
77128661 CGAATGCCTTCAGGACTTAGCCCGGAATTAGCCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
*
77128701 CAAATG-CTCTCGAGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
77128727 TATCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 40 0.25
40 122 0.75
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:77128601 original size:79 final size:78
Alignment explanation
Indices: 77128502--77128726 Score: 263
Period size: 79 Copynumber: 2.8 Consensus size: 78
77128492 GCCACTAGCT
* *
77128502 CAAATGCCTTCGGGATTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
77128567 TATAATAACTCGCA
65 TATAATAACTCACA
* * * *
77128581 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
77128646 ATATAGTAGCTCACA
65 -TATAATAACTCACA
* * * ** *
77128661 CGAATGCCTTCAGGACTTAGCCCGGAATTAGCCACTAGCACAAATG-CTCTCGAGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
77128725 GT
64 GT
77128727 TATCATCCGA
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 63 0.51
80 61 0.49
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCACA
Found at i:77133179 original size:28 final size:28
Alignment explanation
Indices: 77133139--77133221 Score: 148
Period size: 28 Copynumber: 3.0 Consensus size: 28
77133129 GTCACCAAAT
* *
77133139 ACAGATATTTTGTGGCAGTGCCACCAGA
1 ACAGATAATTTGTGGCAGGGCCACCAGA
77133167 ACAGATAATTTGTGGCAGGGCCACCAGA
1 ACAGATAATTTGTGGCAGGGCCACCAGA
77133195 ACAGATAATTTGTGGCAGGGCCACCAG
1 ACAGATAATTTGTGGCAGGGCCACCAG
77133222 GACGCTTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.20
Consensus pattern (28 bp):
ACAGATAATTTGTGGCAGGGCCACCAGA
Found at i:77133374 original size:28 final size:28
Alignment explanation
Indices: 77133330--77133391 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
77133320 TTAACCCTAA
*
77133330 GGGTATAAAGGTCATTTAGCATACATAG
1 GGGTATAAAGGTAATTTAGCATACATAG
* *
77133358 GGGTATAATGGTAATTTTGCATACATAG
1 GGGTATAAAGGTAATTTAGCATACATAG
77133386 GGGTAT
1 GGGTAT
77133392 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.32
Consensus pattern (28 bp):
GGGTATAAAGGTAATTTAGCATACATAG
Found at i:77148428 original size:8 final size:8
Alignment explanation
Indices: 77148415--77148445 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
77148405 ACTTAAGTAA
77148415 ATATTATT
1 ATATTATT
77148423 ATATTATT
1 ATATTATT
77148431 ATATTATT
1 ATATTATT
77148439 ATATTAT
1 ATATTAT
77148446 ATTAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATATTATT
Found at i:77148462 original size:49 final size:48
Alignment explanation
Indices: 77148374--77148466 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 48
77148364 ATAATATACA
* *
77148374 TATATTAGTAATTATTATATATTTACTTATAACTTAAGTAAATATTAT
1 TATATTAGTAATTATTATATATTTAATTATAACTAAAGTAAATATTAT
*
77148422 TATATTATTATATTATTATATTATATTAATTA-AA-TAAAGTAAATA
1 TATATTAGTA-ATTATTATA-TAT-TTAATTATAACTAAAGTAAATA
77148467 AAATAAATTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
48 9 0.23
49 19 0.49
50 5 0.13
51 6 0.15
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (48 bp):
TATATTAGTAATTATTATATATTTAATTATAACTAAAGTAAATATTAT
Found at i:77148700 original size:16 final size:16
Alignment explanation
Indices: 77148673--77148706 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
77148663 TGGGGAGAAA
77148673 GAAAGAAAAGAAAAAGG
1 GAAAGAAAAG-AAAAGG
77148690 GAAAG-AAAGAAAAGG
1 GAAAGAAAAGAAAAGG
77148705 GA
1 GA
77148707 GAAAATGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 4 0.24
17 5 0.29
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
GAAAGAAAAGAAAAGG
Found at i:77148710 original size:17 final size:18
Alignment explanation
Indices: 77148672--77148710 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
77148662 CTGGGGAGAA
77148672 AGAAAGAAAAGAAAAAGG
1 AGAAAGAAAAGAAAAAGG
*
77148690 -GAAAG-AAAGAAAAGGG
1 AGAAAGAAAAGAAAAAGG
77148706 AGAAA
1 AGAAA
77148711 ATGGGGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (18 bp):
AGAAAGAAAAGAAAAAGG
Found at i:77149624 original size:40 final size:39
Alignment explanation
Indices: 77149568--77149683 Score: 162
Period size: 40 Copynumber: 2.9 Consensus size: 39
77149558 CCTTCTCGAG
*
77149568 AATTAAAAGTGAATAGGATTTATTCCCGATTCACTCA-AAGA
1 AATT-AAAGTGAATAGGATTTATTCCTGATTCACT-AGAA-A
77149609 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAGAAA
1 AATTAAAGTGAATAGGATTTATTCCTGATTCACTAGAAA
* *
77149648 TATATAAAGTGAATAGGATTTGTTCCTGATTCACTA
1 AAT-TAAAGTGAATAGGATTTATTCCTGATTCACTA
77149684 TGGTAACTCA
Statistics
Matches: 70, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
39 4 0.06
40 62 0.89
41 4 0.06
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.34
Consensus pattern (39 bp):
AATTAAAGTGAATAGGATTTATTCCTGATTCACTAGAAA
Found at i:77149700 original size:40 final size:37
Alignment explanation
Indices: 77149573--77149708 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 37
77149563 TCGAGAATTA
* * *
77149573 AAAGTGAATAGGATTTATTCCCGATTCACTCAAAGAAATT
1 AAAGTGAATAGGATTTATTCCTGATTCACT--AGGTAA-T
*
77149613 AAAGTGAATAGGATTTATTCCTGATTCACTAGAAATATAT
1 AAAGTGAATAGGATTTATTCCTGATTCACTAG--GTA-AT
*
77149653 AAAGTGAATAGGATTTGTTCCTGATTCACTATGGTAACT
1 AAAGTGAATAGGATTTATTCCTGATTCACTA-GGTAA-T
*
77149692 CAAGGTGAATAGGATTT
1 -AAAGTGAATAGGATTT
77149709 TCCCTAAAAT
Statistics
Matches: 83, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 3 0.04
40 76 0.92
41 2 0.02
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (37 bp):
AAAGTGAATAGGATTTATTCCTGATTCACTAGGTAAT
Found at i:77152100 original size:26 final size:26
Alignment explanation
Indices: 77152071--77152178 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
77152061 TGGTACAAAT
*
77152071 TGATAATGAGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
77152097 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77152123 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77152149 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
77152175 TGAT
1 TGAT
77152179 TGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:77156723 original size:15 final size:15
Alignment explanation
Indices: 77156703--77156732 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77156693 GTAAGAACAT
77156703 AGTAAATCTTTTAAC
1 AGTAAATCTTTTAAC
77156718 AGTAAATCTTTTAAC
1 AGTAAATCTTTTAAC
77156733 TTAACAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (15 bp):
AGTAAATCTTTTAAC
Found at i:77156911 original size:41 final size:41
Alignment explanation
Indices: 77156839--77157020 Score: 206
Period size: 41 Copynumber: 4.5 Consensus size: 41
77156829 AAACAAGGGG
* * * * *
77156839 GCACACATGTACAATTCATGGGCACTGAAGTACAAACAGGA
1 GCACATATGTGCAATTCAGGGGTACCGAAGTACAAACAGGA
* * ** * *
77156880 GCACGTATATGCAATTCAGGGGTACAAAAGTACCAACAAGA
1 GCACATATGTGCAATTCAGGGGTACCGAAGTACAAACAGGA
** *
77156921 GCACATATGTGCAATTTTGGGGTACCGAAGTACAAACAGGG
1 GCACATATGTGCAATTCAGGGGTACCGAAGTACAAACAGGA
*
77156962 GCACATATGTGCAATTTAGGGGTACCGAAGTACAAA-AGG-
1 GCACATATGTGCAATTCAGGGGTACCGAAGTACAAACAGGA
*
77157001 GCACGTATGTGCAATTCAGG
1 GCACATATGTGCAATTCAGG
77157021 AAATAATTAA
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
39 18 0.15
40 3 0.03
41 98 0.82
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.20
Consensus pattern (41 bp):
GCACATATGTGCAATTCAGGGGTACCGAAGTACAAACAGGA
Found at i:77163043 original size:47 final size:47
Alignment explanation
Indices: 77162982--77163521 Score: 873
Period size: 47 Copynumber: 11.4 Consensus size: 47
77162972 CAGCCAAGAC
*
77162982 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77163029 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77163076 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77163123 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77163170 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77163219 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77163266 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
77163313 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77163362 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77163409 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGTATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
77163456 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77163503 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
77163522 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 23, Indels: 8
0.94 0.05 0.02
Matches are distributed among these distances:
47 372 0.80
49 94 0.20
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77163238 original size:143 final size:141
Alignment explanation
Indices: 77162982--77163521 Score: 918
Period size: 143 Copynumber: 3.8 Consensus size: 141
77162972 CAGCCAAGAC
* *
77162982 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
77163047 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
77163112 ATGAATGTGAA
131 ATGAATGTGAA
77163123 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
77163188 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
77163253 TGATGAATGTGAA
129 TGATGAATGTGAA
77163266 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
77163331 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
64 AAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATG
77163396 TGATGAATGTGAA
129 TGATGAATGTGAA
* * *
77163409 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGTATGTGAAAGTGTATATATGTGACAG
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * * **
77163474 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
66 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
77163522 TCCCGAAGGG
Statistics
Matches: 383, Mismatches: 14, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
141 102 0.27
143 281 0.73
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
ATGAATGTGAA
Found at i:77163309 original size:190 final size:188
Alignment explanation
Indices: 77162982--77163521 Score: 900
Period size: 190 Copynumber: 2.9 Consensus size: 188
77162972 CAGCCAAGAC
77162982 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* *
77163047 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
77163112 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
131 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
77163170 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
1 AGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGAT
77163235 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
64 AAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
77163300 TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
129 TGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
77163362 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
* * * * * * * *
77163427 GGCCTAATGGCCGATGTGATGTATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTG
66 GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
77163492 ATGGATGTGAAAGTGCATAAATGTGATAAG
131 ATGAATGTGAAAGTGTATATATGTGATAAG
77163522 TCCCGAAGGG
Statistics
Matches: 331, Mismatches: 17, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
188 17 0.05
190 267 0.81
192 47 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (188 bp):
AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
GGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:77163695 original size:37 final size:37
Alignment explanation
Indices: 77163639--77163717 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
77163629 CCGAGCTCTA
* *
77163639 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
77163676 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
77163713 AAGAC
1 AAGAC
77163718 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:77171873 original size:45 final size:41
Alignment explanation
Indices: 77171798--77171905 Score: 117
Period size: 45 Copynumber: 2.5 Consensus size: 41
77171788 ATATGTGTTC
* ** * *
77171798 TCGTGTAAGACCACGTCTGGGATGTTGGCATCGATATATGTGGT
1 TCGTGTAAGACCATGTCTGGGACATCGGCATCG-TAT-T-TGAT
*
77171842 TATGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
1 T-CGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
*
77171884 TCGTGTAAGACCCTGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
77171906 TAGTGGCACC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 19 0.35
42 4 0.07
43 1 0.02
44 4 0.07
45 27 0.49
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.31
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATCGGCATCGTATTTGAT
Found at i:77178885 original size:40 final size:41
Alignment explanation
Indices: 77178800--77178893 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
77178790 CTAAGTTCGA
77178800 CACTAAGTGTGCG-GTTCAAAATAGCTTCGGCTACAAATGG
1 CACTAAGTGTGCGAGTTCAAAATAGCTTCGGCTACAAATGG
* ** * *
77178840 TACTAAGTGTGCGAGTT-GGAATAGCTTCGGCTATATGA-GG
1 CACTAAGTGTGCGAGTTCAAAATAGCTTCGGCTACA-AATGG
77178880 CACTAAGTGTGCGA
1 CACTAAGTGTGCGA
77178894 TACCAAGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
40 42 0.91
41 4 0.09
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.27
Consensus pattern (41 bp):
CACTAAGTGTGCGAGTTCAAAATAGCTTCGGCTACAAATGG
Found at i:77183498 original size:20 final size:20
Alignment explanation
Indices: 77183464--77183512 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
77183454 ATCTCGTTTT
*
77183464 CAAATCATATAATCAACATCA
1 CAAATCATATAATCAA-AACA
*
77183485 CAAA-CATATCATCAAAACA
1 CAAATCATATAATCAAAACA
77183504 CAAATCATA
1 CAAATCATA
77183513 CCTATCATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 14 0.56
21 4 0.16
ACGTcount: A:0.55, C:0.24, G:0.00, T:0.20
Consensus pattern (20 bp):
CAAATCATATAATCAAAACA
Found at i:77187031 original size:43 final size:43
Alignment explanation
Indices: 77186970--77187065 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 43
77186960 ACTTAGTTCT
77186970 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
1 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
* * *
77187013 AATTAATTAGCTGAAGCTATAATTGTATTGCACACTTAGTGCC
1 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
77187056 -ATTATATTAA
1 AATTA-ATTAA
77187066 ATCGAACTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.08
43 44 0.92
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (43 bp):
AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
Found at i:77191755 original size:39 final size:39
Alignment explanation
Indices: 77191711--77191946 Score: 359
Period size: 39 Copynumber: 6.1 Consensus size: 39
77191701 ATGCAAGACA
*
77191711 CTGGAAATGAATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
77191750 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * * *
77191789 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGGTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
77191828 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
77191867 CTGGAAATGTATCCGGG-TCAAAGTCCCGCAGACTT-GTG
1 CTGGAAATGTATCCGGGCT-AAAGTCCCGCAGGCTTCGTG
* * * *
77191905 TTGGAAATGTATTCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
77191944 CTG
1 CTG
77191947 ATAATATAAT
Statistics
Matches: 180, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
38 34 0.19
39 146 0.81
ACGTcount: A:0.22, C:0.23, G:0.31, T:0.25
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:77197428 original size:24 final size:24
Alignment explanation
Indices: 77197393--77197612 Score: 334
Period size: 24 Copynumber: 9.2 Consensus size: 24
77197383 GGCCTATCCT
* *
77197393 CTTTTAAAAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
77197417 TTTTTAATAACTGGGGCATAAGTC
1 CTTTTAATAACTGGGGCATAAGCC
*
77197441 CTTTTAATAACTGGGGCATAAGTC
1 CTTTTAATAACTGGGGCATAAGCC
* *
77197465 CTTTTGATAACTGGGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77197489 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
77197513 CTTTTGATAACT-GGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77197536 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
77197560 CTTTTGATAACTGGGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77197584 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
77197608 CTTTT
1 CTTTT
77197613 GCACTTCCTC
Statistics
Matches: 177, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
23 21 0.12
24 156 0.88
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:77197475 original size:48 final size:48
Alignment explanation
Indices: 77197393--77197613 Score: 372
Period size: 48 Copynumber: 4.6 Consensus size: 48
77197383 GGCCTATCCT
* * * * * *
77197393 CTTTTAAAAACTGGGGCAAAAGCCTTTTTAATAACTGGGGCATAAGTC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCC
*
77197441 CTTTTAATAACTGGGGCATAAGTCCTTTTGATAACTGGGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCC
77197489 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCC
77197536 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCC
77197584 CTTTTAATAACTGGGGCATAAGCCCTTTTG
1 CTTTTAATAACTGGGGCATAAGCCCTTTTG
77197614 CACTTCCTCC
Statistics
Matches: 164, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
47 47 0.29
48 117 0.71
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (48 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCC
Found at i:77197563 original size:95 final size:96
Alignment explanation
Indices: 77197393--77197613 Score: 372
Period size: 95 Copynumber: 2.3 Consensus size: 96
77197383 GGCCTATCCT
* * * * * *
77197393 CTTTTAAAAACTGGGGCAAAAGCCTTTTTAATAACTGGGGCATAAGTCCTTTTAATAACTGGGGC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGC
*
77197458 ATAAGTCCTTTTGATAACTGGGGCAGAAGCC
66 ATAAGCCCTTTTGATAACTGGGGCAGAAGCC
77197489 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACT-GGGCAGAAGCCCTTTTAATAACTGGGGC
1 CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGC
77197553 ATAAGCCCTTTTGATAACTGGGGCAGAAGCC
66 ATAAGCCCTTTTGATAACTGGGGCAGAAGCC
77197584 CTTTTAATAACTGGGGCATAAGCCCTTTTG
1 CTTTTAATAACTGGGGCATAAGCCCTTTTG
77197614 CACTTCCTCC
Statistics
Matches: 118, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
95 86 0.73
96 32 0.27
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (96 bp):
CTTTTAATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCAGAAGCCCTTTTAATAACTGGGGC
ATAAGCCCTTTTGATAACTGGGGCAGAAGCC
Found at i:77197688 original size:20 final size:20
Alignment explanation
Indices: 77197663--77197701 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
77197653 TATGAATACC
77197663 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
77197683 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
77197702 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:77197707 original size:20 final size:20
Alignment explanation
Indices: 77197664--77197708 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
77197654 ATGAATACCT
**
77197664 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
77197684 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
77197704 CATGT
1 CATGT
77197709 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:77197777 original size:25 final size:25
Alignment explanation
Indices: 77197745--77197794 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
77197735 ATATATAAAC
* * *
77197745 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77197770 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
77197795 TATTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:77200358 original size:43 final size:43
Alignment explanation
Indices: 77200297--77200392 Score: 149
Period size: 43 Copynumber: 2.2 Consensus size: 43
77200287 ACTTAGTTCT
77200297 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
1 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
* * *
77200340 AATTAATTAGCTGAAGCTATAATTGTATTGCACACTTAGTGCC
1 AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
77200383 -ATTATATTAA
1 AATTA-ATTAA
77200393 ATCGAACTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 4 0.08
43 44 0.92
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (43 bp):
AATTAATTAACCGAAGCTATAATTGTATTGCACACCTAGTGCC
Found at i:77202374 original size:43 final size:43
Alignment explanation
Indices: 77202327--77202486 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
77202317 AATGCCAACA
*
77202327 TCCCAGACGTGGTCTTACATGAAATCACATATCGATGCCACTG
1 TCCCAGACGTGGTCTTACACGAAATCACATATCGATGCCACTG
* *
77202370 TCCCAGACAG-GGTCTTACACG-AATCAAATA-CGATGCCAATG
1 TCCCAGAC-GTGGTCTTACACGAAATCACATATCGATGCCACTG
* * * * * *
77202411 TTCTAGACATGGTCTTACACGTAATCACATATCGATTCCAAC-A
1 TCCCAGACGTGGTCTTACACGAAATCACATATCGATGCC-ACTG
*
77202454 TCCCAGACGTGGTCTTACATGAGAA-CACATATC
1 TCCCAGACGTGGTCTTACACGA-AATCACATATC
77202487 AAAAATCCTA
Statistics
Matches: 96, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 27 0.28
42 16 0.17
43 49 0.51
44 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAATCACATATCGATGCCACTG
Found at i:77203638 original size:14 final size:15
Alignment explanation
Indices: 77203621--77203649 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77203611 ATACAAAAAT
77203621 TTCACACAT-ATAAA
1 TTCACACATAATAAA
77203635 TTCACACATAATAAA
1 TTCACACATAATAAA
77203650 CATAGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:77214531 original size:42 final size:42
Alignment explanation
Indices: 77214484--77214567 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
77214474 GATTACCAAA
*
77214484 AGGATAGGGTCGGTAGCATATTGATTGGCTTTACCGTCTGAG
1 AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
77214526 AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
1 AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
77214568 TTGGAAAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.21, C:0.15, G:0.33, T:0.30
Consensus pattern (42 bp):
AGGATAGGGCCGGTAGCATATTGATTGGCTTTACCGTCTGAG
Found at i:77217192 original size:11 final size:11
Alignment explanation
Indices: 77217176--77217201 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
77217166 ACACGGGCGT
77217176 GTGTCTAGACC
1 GTGTCTAGACC
77217187 GTGTCTAGACC
1 GTGTCTAGACC
77217198 GTGT
1 GTGT
77217202 GTGACACACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (11 bp):
GTGTCTAGACC
Found at i:77219936 original size:50 final size:50
Alignment explanation
Indices: 77219861--77220072 Score: 309
Period size: 50 Copynumber: 4.2 Consensus size: 50
77219851 CACTCATTTA
* *
77219861 GCCGAATACACAAGATCAAATATAACATCACATTTGTACATACATATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
* * *
77219911 GCCGAATATACAAGATAAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
* * *
77219961 GCCGAATATACAACATCAAATATAACATCACATATCTACATACCA-ATAGG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATA-CATATATG
* * *
77220011 GTCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATCTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
77220061 GCCGAATATACA
1 GCCGAATATACA
77220073 TGGTCATTTA
Statistics
Matches: 142, Mismatches: 18, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 140 0.99
51 1 0.01
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.25
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACATATATG
Found at i:77220270 original size:41 final size:41
Alignment explanation
Indices: 77220147--77220302 Score: 108
Period size: 41 Copynumber: 3.9 Consensus size: 41
77220137 TTAAAATAAA
** * *
77220147 TCACCAGCATAAAACCTGCTAGGC-ATAAGCCTGAATCACA-
1 TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTG-ATCAAAT
* * * * * * ***
77220187 -CACCGGCACAAGGCCAGCTAGACTCAAAGTCTGATTTTAT
1 TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTGATCAAAT
77220227 TCACC-GACAATAA-GCCTGCTAGGC-ATAAAGCCTGATCAAAT
1 TCACCAG-C-ATAAGGCCTGCTAGGCTA-AAAGCCTGATCAAAT
*
77220268 TCACCAGCATAAGGCTTGCTAGGCTAAAAGCCTGA
1 TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTGA
77220303 ATATCACTAT
Statistics
Matches: 86, Mismatches: 21, Indels: 17
0.69 0.17 0.14
Matches are distributed among these distances:
39 20 0.23
40 11 0.13
41 50 0.58
42 5 0.06
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.20
Consensus pattern (41 bp):
TCACCAGCATAAGGCCTGCTAGGCTAAAAGCCTGATCAAAT
Found at i:77222482 original size:36 final size:36
Alignment explanation
Indices: 77222428--77222499 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
77222418 ACCGCGATGT
* *
77222428 AAATCTCGGATCTGTATCTGACACAATAGAAATAGG
1 AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
77222464 AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
1 AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
77222500 TACTCCGTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (36 bp):
AAATCTCGAATCTCTATCTGACACAATAGAAATAGG
Found at i:77227507 original size:50 final size:50
Alignment explanation
Indices: 77227448--77227705 Score: 408
Period size: 50 Copynumber: 5.2 Consensus size: 50
77227438 CATTTAGTCA
* * *
77227448 AATACACAAGATCCAATATAACATCACATATGTACATACCTATATGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
77227498 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
* ***
77227548 AATATACACGATCAAATATAACATCACATATGTACATACCTATGTTATCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
* * * *
77227598 AATATACAAGTTCAAATATATCATCACATATCTACATACCTATCTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
*
77227648 AATATACAAGATCAAATATAACATCACATATGTACATGCCTATGTGGCCG
1 AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
77227698 AATATACA
1 AATATACA
77227706 TGGTCATTTA
Statistics
Matches: 188, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 188 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.27
Consensus pattern (50 bp):
AATATACAAGATCAAATATAACATCACATATGTACATACCTATGTGGCCG
Found at i:77242445 original size:17 final size:17
Alignment explanation
Indices: 77242423--77242463 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
77242413 ATTAGCTTTT
77242423 CATTTCATATCATAAGC
1 CATTTCATATCATAAGC
77242440 CATTTCATATCATAAGC
1 CATTTCATATCATAAGC
77242457 CATTTCA
1 CATTTCA
77242464 AAAACTCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (17 bp):
CATTTCATATCATAAGC
Found at i:77245817 original size:93 final size:93
Alignment explanation
Indices: 77245707--77245877 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
77245697 GCCCCTAAGT
* * *
77245707 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTTGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
77245772 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
77245800 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77245865 CGAGTTCGGATGC
66 CGAGTTCGGATGC
77245878 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:77245874 original size:46 final size:46
Alignment explanation
Indices: 77245702--77245874 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
77245692 AACCTGCCCC
* * * *
77245702 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
77245748 TAAATGAACTTGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
77245796 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
77245841 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
77245875 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:77252585 original size:19 final size:20
Alignment explanation
Indices: 77252561--77252598 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
77252551 GGTACCACCA
77252561 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
77252580 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
77252599 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:77252894 original size:46 final size:45
Alignment explanation
Indices: 77252827--77252994 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 45
77252817 TGCCCCTAAG
*
77252827 TGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCAGGCGTT-GCATCCATAAA
* * *
77252873 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTC--A-GGC--GTTGCATCCATAAA
* * *
77252920 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCAGG-C-GTTGCATCCATAAA
77252966 TGAACTCGGACTCAACTCAACGAGTTCAG
1 TGAACTCGGACTCAACTCAACGAGTTCAG
77252995 ATGCTCAACC
Statistics
Matches: 101, Mismatches: 11, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
43 7 0.07
44 2 0.02
45 1 0.01
46 52 0.51
47 28 0.28
48 2 0.02
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCAGGCGTTGCATCCATAAA
Found at i:77252943 original size:93 final size:93
Alignment explanation
Indices: 77252828--77252998 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
77252818 GCCCCTAAGT
*
77252828 GAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAATGAACTCGGACTCAACTCA
*
77252892 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCAGATGCCTAGTTACATCTCAC
* * *
77252921 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
77252986 CGAGTTCAGATGC
66 CGAGTTCAGATGC
77252999 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:77254226 original size:27 final size:26
Alignment explanation
Indices: 77254196--77254405 Score: 190
Period size: 27 Copynumber: 7.8 Consensus size: 26
77254186 TTTAGTTTAC
*
77254196 TAAAATTACCGAAATACCCTTATTTTG
1 TAAAATTACCAAAATACCCTTA-TTTG
* ** *
77254223 TAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCT-TATTTG
**
77254250 TAAAATTACTGAAATA-CCTTCGATTTG
1 TAAAATTACCAAAATACCCTT--ATTTG
*
77254277 TAAAATTACCAAAATACCCCTAATTTG
1 TAAAATTACCAAAATA-CCCTTATTTG
**
77254304 TAAAATTACCAAAATACCACTGGTTTG
1 TAAAATTACCAAAATACC-CTTATTTG
* *
77254331 TGAAATTACCAAAATACCCTCAATTTG
1 TAAAATTACCAAAATACCCT-TATTTG
* *
77254358 TAAAATTACCAAAATACCCCTGATTTA
1 TAAAATTACCAAAATA-CCCTTATTTG
*
77254385 TAAAGTTA-CAGAAATACCCTT
1 TAAAATTACCA-AAATACCCTT
77254406 GACTTTCTAA
Statistics
Matches: 156, Mismatches: 18, Indels: 19
0.81 0.09 0.10
Matches are distributed among these distances:
26 13 0.08
27 135 0.87
28 5 0.03
29 3 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (26 bp):
TAAAATTACCAAAATACCCTTATTTG
Found at i:77254264 original size:54 final size:53
Alignment explanation
Indices: 77254196--77254404 Score: 217
Period size: 54 Copynumber: 3.9 Consensus size: 53
77254186 TTTAGTTTAC
* * ** *
77254196 TAAAATTACCGAAATACCCTTATTTTGTAAAAATACTGAAATACCCTCGATTTG
1 TAAAATTACCAAAATACCCTTA-TTTGTAAAATTACCAAAATACCCTCAATTTG
**
77254250 TAAAATTACTGAAATA-CCTTCGATTTGTAAAATTACCAAAATACCC-CTAATTTG
1 TAAAATTACCAAAATACCCTT--ATTTGTAAAATTACCAAAATACCCTC-AATTTG
** *
77254304 TAAAATTACCAAAATACCACTGGTTTGTGAAATTACCAAAATACCCTCAATTTG
1 TAAAATTACCAAAATACC-CTTATTTGTAAAATTACCAAAATACCCTCAATTTG
* * *
77254358 TAAAATTACCAAAATACCCCTGATTTATAAAGTTA-CAGAAATACCCT
1 TAAAATTACCAAAATA-CCCTTATTTGTAAAATTACCA-AAATACCCT
77254405 TGACTTTCTA
Statistics
Matches: 133, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
53 7 0.05
54 119 0.89
55 5 0.04
56 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCTTATTTGTAAAATTACCAAAATACCCTCAATTTG
Found at i:77254319 original size:81 final size:80
Alignment explanation
Indices: 77254196--77254404 Score: 249
Period size: 81 Copynumber: 2.6 Consensus size: 80
77254186 TTTAGTTTAC
* * * * ** **
77254196 TAAAATTACCGAAATACCCTTATTTTGTAAAAATACTGAAATACCCTCGATTTGTAAAATTACTG
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCT-GATTTGTAAAATTACCA
* *
77254261 AAATACCTTCGATTTG
65 AAATACCCTCAATTTG
* *
77254277 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCA
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACC-CTGATTTGTAAAATTACCA
77254342 AAATACCCTCAATTTG
65 AAATACCCTCAATTTG
* * *
77254358 TAAAATTACCAAAATACCCCTGATTTATAAAGTTA-CAGAAATACCCT
1 TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCA-AAATACCCT
77254405 TGACTTTCTA
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
80 4 0.04
81 105 0.95
82 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (80 bp):
TAAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTGATTTGTAAAATTACCAA
AATACCCTCAATTTG
Found at i:77254447 original size:27 final size:27
Alignment explanation
Indices: 77254415--77254466 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
77254405 TGACTTTCTA
*
77254415 AAAATTA-TAGAAATGCCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
77254442 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
77254467 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:77254584 original size:27 final size:27
Alignment explanation
Indices: 77254521--77254584 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
77254511 CCCCTATTAA
*
77254521 GTAAAAAGACCGTAAAGCCCCTGTAGG
1 GTAAAATGACCGTAAAGCCCCTGTAGG
* *
77254548 GTAAAGTGACCGTAATA-CCCCTGTATG
1 GTAAAATGACCGTAA-AGCCCCTGTAGG
77254575 GTAAAATGAC
1 GTAAAATGAC
77254585 GAATATGCCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GTAAAATGACCGTAAAGCCCCTGTAGG
Found at i:77255465 original size:52 final size:51
Alignment explanation
Indices: 77255387--77255522 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 51
77255377 GAGGAAGTGC
*
77255387 AAAAGGGCTTATGCCTCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
*
77255439 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGGTTTGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
*
77255490 AAAAGGGCTT-TACCCCAG-TTATT-AAAAGAGGCT
1 AAAAGGGCTTATGCCCCAGTTTATTGAAAAG-GGCT
77255523 AGGCCTCCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 5 0.06
49 8 0.10
50 7 0.09
51 25 0.32
52 34 0.43
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTACCG
Found at i:77255484 original size:25 final size:26
Alignment explanation
Indices: 77255387--77255522 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
77255377 GAGGAAGTGC
*
77255387 AAAAGGGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
77255413 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
77255439 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
77255465 AAAAGGGGTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
77255490 AAAAGGGCTT-TACCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
77255513 AAAAGAGGCT
1 AAAAG-GGCT
77255523 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 29 0.30
26 56 0.58
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:77255714 original size:42 final size:42
Alignment explanation
Indices: 77255655--77255746 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
77255645 TAGTCTCCCC
* ** *
77255655 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
77255697 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
77255739 AAATGGGC
1 AAATGGGC
77255747 CTATGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:77255805 original size:31 final size:31
Alignment explanation
Indices: 77255770--77255848 Score: 140
Period size: 31 Copynumber: 2.5 Consensus size: 31
77255760 CGTTTATAGT
77255770 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
77255801 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
*
77255832 AAAGGCTTCGTCCCAGT
1 AAAGGCTTCGGCCCAGT
77255849 AACCGTTAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGAAATGATTTATGA
Found at i:77257183 original size:43 final size:43
Alignment explanation
Indices: 77257092--77257196 Score: 115
Period size: 43 Copynumber: 2.4 Consensus size: 43
77257082 GTCCCAAATG
* * *
77257092 TGGTCTTACATGTAATCACATATCGATGCCACTGTCAAAGACA
1 TGGTCTTACATGCAATCACATAACGATGCCACTGTCAAACACA
* **
77257135 GGGTCTTACATG-AATCACATACACGATGCCGA-TGTCCCACACA
1 TGGTCTTACATGCAATCACATA-ACGATGCC-ACTGTCAAACACA
*
77257178 TGGTCTTCCATGCAATCAC
1 TGGTCTTACATGCAATCAC
77257197 CTATCGTAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
42 9 0.17
43 36 0.69
44 7 0.13
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.26
Consensus pattern (43 bp):
TGGTCTTACATGCAATCACATAACGATGCCACTGTCAAACACA
Found at i:77257801 original size:15 final size:15
Alignment explanation
Indices: 77257783--77257812 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
77257773 TAAAAAATTA
77257783 CAATACAAAACATAT
1 CAATACAAAACATAT
*
77257798 CAATCCAAAACATAT
1 CAATACAAAACATAT
77257813 ATTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.00, T:0.20
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:77271535 original size:35 final size:35
Alignment explanation
Indices: 77271480--77271553 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
77271470 ATCTATATCT
* * *
77271480 GTATTTGAGATAGGCTTAGGCACAAATATGTATAC
1 GTATCTGAAATAGGCTTAGGCACAAATATGCATAC
* * *
77271515 GTATCTGAAATAGGCTTAGGCCCGAATATGCATAT
1 GTATCTGAAATAGGCTTAGGCACAAATATGCATAC
77271550 GTAT
1 GTAT
77271554 TTGTGATGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.31
Consensus pattern (35 bp):
GTATCTGAAATAGGCTTAGGCACAAATATGCATAC
Found at i:77276926 original size:40 final size:40
Alignment explanation
Indices: 77276741--77276912 Score: 233
Period size: 40 Copynumber: 4.3 Consensus size: 40
77276731 GGGCTAAGTC
* * * *
77276741 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGAT
*
77276781 CCGAAGGCATTTGTGCGAGTTAC-ATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
*
77276820 CCGAAGGCATTTGTGCGAGTTACTATTACCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
* *
77276860 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-T
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
77276899 CCCGAAGGCATTTG
1 -CCGAAGGCATTTG
77276913 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 7, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
39 40 0.33
40 75 0.61
41 7 0.06
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
Found at i:77276945 original size:79 final size:79
Alignment explanation
Indices: 77276769--77276919 Score: 232
Period size: 79 Copynumber: 1.9 Consensus size: 79
77276759 GTGACCATAT
* *
77276769 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACATATCCGGACTAAGATCCGAAGGCATTTGT
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGA
*
77276834 GCGAGTTACTATTA
66 ACGAGTTACTATTA
* *
77276848 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTT
1 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTAC-ATAACCGGACTAAGAT-CCGAAGGCATTT
77276912 GAACGAGT
64 GAACGAGT
77276920 AGCTATATCC
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
79 36 0.55
80 29 0.45
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGA
ACGAGTTACTATTA
Found at i:77285140 original size:40 final size:40
Alignment explanation
Indices: 77284955--77285126 Score: 224
Period size: 40 Copynumber: 4.3 Consensus size: 40
77284945 GGGCTAAGTC
* * * *
77284955 CCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT
1 CCGAAGGCATTTGTGC-GAGTTACTATAACCGGACTAAGAT
* * *
77284995 CCGAAGGCATTTGTACGAGTTAC-ATATCTGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
77285034 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
* *
77285074 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-T
1 CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
77285113 CCCGAAGGCATTTG
1 -CCGAAGGCATTTG
77285127 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 38 0.32
40 76 0.63
41 6 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATAACCGGACTAAGAT
Found at i:77285159 original size:79 final size:79
Alignment explanation
Indices: 77284983--77285133 Score: 214
Period size: 79 Copynumber: 1.9 Consensus size: 79
77284973 GTGACCATAT
* * *
77284983 CCGGACTAAGATCCGAAGGCATTTGTACGAGTTACATATCTGGACTAAGATCCGAAGGCATTTGT
1 CCGGACTAAGATCCGAAGGCATTTGTACGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGA
*
77285048 GCGAGTTACTATAA
66 ACGAGTTACTATAA
* * *
77285062 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTT
1 CCGGACTAAGATCCGAAGGCATTTGTACGAGTTAC-ATAACCGGACTAAGAT-CCGAAGGCATTT
77285126 GAACGAGT
64 GAACGAGT
77285134 AGCTATATCC
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
79 35 0.56
80 28 0.44
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGGACTAAGATCCGAAGGCATTTGTACGAGTTACATAACCGGACTAAGATCCGAAGGCATTTGA
ACGAGTTACTATAA
Found at i:77289281 original size:40 final size:40
Alignment explanation
Indices: 77289090--77289293 Score: 245
Period size: 40 Copynumber: 5.1 Consensus size: 40
77289080 TCAAATGATG
* *
77289090 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATA
*
77289130 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA
* *
77289169 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* *
77289209 TCCGGGTTAAGTCCGGAAGGCATTTGTGCGAGTTACTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
* * ** *
77289249 ACCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
77289289 TCCGG
1 TCCGG
77289294 TTAAATTCCG
Statistics
Matches: 141, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.25
40 98 0.70
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:77289296 original size:79 final size:79
Alignment explanation
Indices: 77289091--77289307 Score: 248
Period size: 79 Copynumber: 2.7 Consensus size: 79
77289081 CAAATGATGT
* *
77289091 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGACTATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
77289154 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
* * *
77289171 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAG-TCCGGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGTTAAGATCC-GAAGGCATTT
77289234 GTGCGAGTTACT-ATAA
64 GTGCGAGTTACTAAT-A
* **
77289250 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTTGCTATATCCGGTTAA-ATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTTAAGA-TCCGAAGG
77289308 TACGTGATTC
Statistics
Matches: 117, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 5 0.04
79 64 0.55
80 48 0.41
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:77296385 original size:39 final size:40
Alignment explanation
Indices: 77296284--77296439 Score: 176
Period size: 40 Copynumber: 3.9 Consensus size: 40
77296274 TCAAATGATG
* *
77296284 TCCGGGCTAAGACCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
77296323 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
* *
77296364 TCCGGGCTAAG-CCCGAAGGCA-TTGTTACGAGTTACTAAA
1 TCCGGGCTAAGACCCGAAGGCATTTG-TGCGAGTTACTAAT
* * *
77296403 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACT
77296440 GTAACCGAGC
Statistics
Matches: 100, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
38 3 0.03
39 30 0.30
40 55 0.55
41 12 0.12
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:77296448 original size:40 final size:40
Alignment explanation
Indices: 77296284--77296468 Score: 170
Period size: 40 Copynumber: 4.7 Consensus size: 40
77296274 TCAAATGATG
* * * *
77296284 TCCGGGCTAAGACCCGAAGGC-TTTGTGCTAAGTGAC-TATA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTTA-A
77296324 TCCG-GACTAAGAT-CCGAAGGCATTTGTGCGAGTTAC-TAA
1 TCCGAG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTTAA
* * *
77296363 TTCCGGGCTAAG-CCCGAAGGCA-TTGTTACGAGTTACTAAA
1 -TCCGAGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACTTAA
*
77296403 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTGTAA
1 TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-TAA
*
77296444 -CCGAGCTATGTCCCGAAGGCATTTG
1 TCCGAGCTAAGTCCCGAAGGCATTTG
77296469 AACAAGTTGC
Statistics
Matches: 123, Mismatches: 11, Indels: 22
0.79 0.07 0.14
Matches are distributed among these distances:
38 3 0.02
39 29 0.24
40 78 0.63
41 13 0.11
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
TCCGAGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTTAA
Found at i:77296491 original size:79 final size:76
Alignment explanation
Indices: 77296284--77296501 Score: 199
Period size: 79 Copynumber: 2.8 Consensus size: 76
77296274 TCAAATGATG
* * * * *
77296284 TCCGGGCTAAGACCCGAAGGCTTTGT-GCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGAGCTAAG-CCCGAAGGCATTGTAAC-AAGTTACTATATCCGG-TTAAG-TCCGAAGGCATT
77296348 TGTGCGAGTTACTAA
62 TGTGCGAGTTACTAA
* * * *
77296363 TTCCGGGCTAAGCCCGAAGGCATTGTTACGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCATTT
1 -TCCGAGCTAAGCCCGAAGGCATTGTAACAAGTTACTATATCCG-GTTAAGT-CCGAAGGCATTT
77296428 GTGCGAGTTACTGTAA
63 GTGCGAGTTAC--TAA
* * *
77296444 -CCGAGCTATGTCCCGAAGGCATT-TGAACAAGTTGCTATATCCGGTTAAATTCCGAAGG
1 TCCGAGCTAAG-CCCGAAGGCATTGT-AACAAGTTACTATATCCGGTT-AAGTCCGAAGG
77296502 TACGTGATTC
Statistics
Matches: 117, Mismatches: 13, Indels: 17
0.80 0.09 0.12
Matches are distributed among these distances:
78 1 0.01
79 71 0.61
80 42 0.36
81 3 0.03
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (76 bp):
TCCGAGCTAAGCCCGAAGGCATTGTAACAAGTTACTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGTTACTAA
Found at i:77300605 original size:35 final size:35
Alignment explanation
Indices: 77300549--77300629 Score: 99
Period size: 35 Copynumber: 2.3 Consensus size: 35
77300539 TGTATATCTA
* * *
77300549 TATCTGTATTTGAAATAGGCTTAGGCCCAAATATG
1 TATCTGTATCTAAAATAGGCTTAAGCCCAAATATG
* *
77300584 TATCTGTATCTAAAATGGGCTTAAGCCCGAATATG
1 TATCTGTATCTAAAATAGGCTTAAGCCCAAATATG
* *
77300619 CATTTGTATCT
1 TATCTGTATCT
77300630 GTGATGGGAT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.36
Consensus pattern (35 bp):
TATCTGTATCTAAAATAGGCTTAAGCCCAAATATG
Found at i:77302512 original size:29 final size:28
Alignment explanation
Indices: 77302469--77302523 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
77302459 AAGATAAACC
*
77302469 GATTTGGCTTCGGGCCATGCATATCAGCT
1 GATTTGCCTTCGGGCCATG-ATATCAGCT
*
77302498 GATTTGCCTTTGGGCCATGATATCAG
1 GATTTGCCTTCGGGCCATGATATCAG
77302524 TTTTTCGGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (28 bp):
GATTTGCCTTCGGGCCATGATATCAGCT
Found at i:77306359 original size:43 final size:43
Alignment explanation
Indices: 77306298--77306395 Score: 169
Period size: 43 Copynumber: 2.3 Consensus size: 43
77306288 AGTAAGACCA
*
77306298 TGGCATTGATATATGTGTGCGAGTAAGACCACATTTAATACGT
1 TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
* *
77306341 TGGCATCGATATATGTGTGCGAGTAAGACCACGTTTAATATGT
1 TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
77306384 TGGCATCGATAT
1 TGGCATCGATAT
77306396 GTGATTCTGA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 52 1.00
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (43 bp):
TGGCATCGATATATGTGTGCGAGTAAGACCACATTTAATACGT
Found at i:77312186 original size:20 final size:20
Alignment explanation
Indices: 77312161--77312204 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
77312151 TTTTAATTTT
*
77312161 ATAATTCAATAATACCATTG
1 ATAATTCAATAATACCATCG
77312181 ATAATTCAATAATACCATCG
1 ATAATTCAATAATACCATCG
77312201 ATAA
1 ATAA
77312205 AGTCTGACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.32
Consensus pattern (20 bp):
ATAATTCAATAATACCATCG
Found at i:77318652 original size:27 final size:26
Alignment explanation
Indices: 77318622--77318767 Score: 148
Period size: 27 Copynumber: 5.4 Consensus size: 26
77318612 TGGATAAGTT
*
77318622 GTAGAATTACCAAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGT-AG
* * *
77318649 GTAGAATTATCGAAATAACCCTATAG
1 GTAGAATTACCGAAATACCCCTGTAG
*
77318675 GATAGAATTACCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTA-G
*
77318703 GTAGAAATACCGAAATACCCCTGTAG
1 GTAGAATTACCGAAATACCCCTGTAG
* * * *
77318729 GCTAGAATTATCGAGATACCCTTGTGG
1 G-TAGAATTACCGAAATACCCCTGTAG
*
77318756 GCTAAAATTACC
1 G-TAGAATTACC
77318768 ATTTTGCCCC
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.05
27 92 0.93
28 2 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (26 bp):
GTAGAATTACCGAAATACCCCTGTAG
Done.