Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 242 of 295
Found at i:77740766 original size:11 final size:12
Alignment explanation
Indices: 77740750--77740791 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
77740740 TGTGGACCCC
77740750 TTTTTTTG-AAT
1 TTTTTTTGAAAT
*
77740761 TTTTTTCGAAAT
1 TTTTTTTGAAAT
*
77740773 TTTTTTTCAAAT
1 TTTTTTTGAAAT
*
77740785 ATTTTTT
1 TTTTTTT
77740792 CTTTTCTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
11 7 0.27
12 19 0.73
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.69
Consensus pattern (12 bp):
TTTTTTTGAAAT
Found at i:77740813 original size:12 final size:12
Alignment explanation
Indices: 77740760--77740824 Score: 53
Period size: 13 Copynumber: 5.3 Consensus size: 12
77740750 TTTTTTTGAA
77740760 TTTTTTTCGAAAT
1 TTTTTTTC-AAAT
77740773 TTTTTTTCAAAT
1 TTTTTTTCAAAT
****
77740785 ATTTTTTCTTTTCT
1 -TTTTTT-TCAAAT
77740799 TTTTTTTCAAA-
1 TTTTTTTCAAAT
77740810 TTTTTTTC-AAT
1 TTTTTTTCAAAT
77740821 TTTT
1 TTTT
77740825 AAAAGTAACA
Statistics
Matches: 41, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
10 2 0.05
11 12 0.29
12 5 0.12
13 20 0.49
14 2 0.05
ACGTcount: A:0.18, C:0.09, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTTTTTCAAAT
Found at i:77746279 original size:25 final size:25
Alignment explanation
Indices: 77746215--77746329 Score: 92
Period size: 25 Copynumber: 4.6 Consensus size: 25
77746205 TCATGTACAT
* *
77746215 GTATGCTCATACGAGCTGT-GAATCA
1 GTATGCTCTTACGAGCTATAG-ATCA
* *
77746240 GTATGCTCACT-CGAGCTATAGATTA
1 GTATGCTC-TTACGAGCTATAGATCA
*
77746265 GTATGCTCTTACGAGCTATA-ATTCG
1 GTATGCTCTTACGAGCTATAGA-TCA
* * *
77746290 GTATACTCTCACGAGCTATAAATCA
1 GTATGCTCTTACGAGCTATAGATCA
* *
77746315 ATATGCTCTCACGAG
1 GTATGCTCTTACGAG
77746330 ATGTGGAGCA
Statistics
Matches: 74, Mismatches: 11, Indels: 10
0.78 0.12 0.11
Matches are distributed among these distances:
24 2 0.03
25 69 0.93
26 3 0.04
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (25 bp):
GTATGCTCTTACGAGCTATAGATCA
Found at i:77746305 original size:50 final size:50
Alignment explanation
Indices: 77746215--77746329 Score: 124
Period size: 50 Copynumber: 2.3 Consensus size: 50
77746205 TCATGTACAT
* * * * * *
77746215 GTATGCTCATACGAGCTGTGAATCAGTATGCTCACTCGAGCTATAGATTA
1 GTATGCTCTTACGAGCTATGAATCAGTATACTCACACGAGCTATAAATCA
* *
77746265 GTATGCTCTTACGAGCTAT-AATTCGGTATACTCTCACGAGCTATAAATCA
1 GTATGCTCTTACGAGCTATGAA-TCAGTATACTCACACGAGCTATAAATCA
* *
77746315 ATATGCTCTCACGAG
1 GTATGCTCTTACGAG
77746330 ATGTGGAGCA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 2 0.04
50 52 0.96
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (50 bp):
GTATGCTCTTACGAGCTATGAATCAGTATACTCACACGAGCTATAAATCA
Found at i:77748786 original size:22 final size:22
Alignment explanation
Indices: 77748760--77748805 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
77748750 TGAATTATGG
77748760 TAAATGAACCATATTATTTTGA
1 TAAATGAACCATATTATTTTGA
77748782 TAAATGAACCATATTATTTTGA
1 TAAATGAACCATATTATTTTGA
77748804 TA
1 TA
77748806 TTGTTTTGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (22 bp):
TAAATGAACCATATTATTTTGA
Found at i:77751589 original size:18 final size:18
Alignment explanation
Indices: 77751566--77751600 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
77751556 GCCTAAATAC
77751566 GGTCTGAAGATTTTGTTA
1 GGTCTGAAGATTTTGTTA
77751584 GGTCTGAAGATTTTGTT
1 GGTCTGAAGATTTTGTT
77751601 CATCAAACCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.06, G:0.29, T:0.46
Consensus pattern (18 bp):
GGTCTGAAGATTTTGTTA
Found at i:77754155 original size:19 final size:19
Alignment explanation
Indices: 77754131--77754174 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
77754121 ATATCATAGC
77754131 AATAAACATATTAAAACTA
1 AATAAACATATTAAAACTA
77754150 AATAAACATATTAAAACTA
1 AATAAACATATTAAAACTA
*
77754169 AGTAAA
1 AATAAA
77754175 AACATACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.64, C:0.09, G:0.02, T:0.25
Consensus pattern (19 bp):
AATAAACATATTAAAACTA
Found at i:77781606 original size:33 final size:34
Alignment explanation
Indices: 77781539--77781606 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
77781529 CTAAGCCCAG
**
77781539 ATCAGTAACAATCTAGGCCTGAGCCCTATTCAGT
1 ATCAGTAACAATCTAGGCCTGAGCCCTACACAGT
* * *
77781573 ATCAGT-ACAGTCTGGGCCTTAGCCCTACACAGT
1 ATCAGTAACAATCTAGGCCTGAGCCCTACACAGT
77781606 A
1 A
77781607 ATAGTGTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 23 0.79
34 6 0.21
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (34 bp):
ATCAGTAACAATCTAGGCCTGAGCCCTACACAGT
Found at i:77782019 original size:27 final size:26
Alignment explanation
Indices: 77781989--77782109 Score: 107
Period size: 27 Copynumber: 4.5 Consensus size: 26
77781979 GGGCATAATT
* *
77781989 GTCATTTTACCATATAGGGATATTACG
1 GTCATTTTACC-TACAGGGGTATTACG
*
77782016 GTCATTTTATCCTACAGGGGCATTACG
1 GTCATTTTA-CCTACAGGGGTATTACG
* * **
77782043 GTTATTTTACCCTAGAGGGGTATTATA
1 GTCATTTTA-CCTACAGGGGTATTACG
* **
77782070 GTTATTTTACCTTACAGGGGTATTATA
1 GTCATTTTACC-TACAGGGGTATTACG
*
77782097 GTCATTGTACCTA
1 GTCATTTTACCTA
77782110 TTTTGGGGTT
Statistics
Matches: 80, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.05
27 74 0.93
28 2 0.03
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.39
Consensus pattern (26 bp):
GTCATTTTACCTACAGGGGTATTACG
Found at i:77782050 original size:54 final size:54
Alignment explanation
Indices: 77781992--77782094 Score: 127
Period size: 54 Copynumber: 1.9 Consensus size: 54
77781982 CATAATTGTC
* *
77781992 ATTTTACCATATAGGGATATTACGGTCATTTTATCC-TACAGGGGCATTACGGTT
1 ATTTTACCATAGAGGGATATTACAGTCATTTTA-CCTTACAGGGGCATTACGGTT
* * * * *
77782046 ATTTTACCCTAGAGGGGTATTATAGTTATTTTACCTTACAGGGGTATTA
1 ATTTTACCATAGAGGGATATTACAGTCATTTTACCTTACAGGGGCATTA
77782095 TAGTCATTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
53 2 0.05
54 39 0.95
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.39
Consensus pattern (54 bp):
ATTTTACCATAGAGGGATATTACAGTCATTTTACCTTACAGGGGCATTACGGTT
Found at i:77785123 original size:13 final size:13
Alignment explanation
Indices: 77785105--77785130 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77785095 ATGTAATTGT
77785105 AACAAATTAATTC
1 AACAAATTAATTC
77785118 AACAAATTAATTC
1 AACAAATTAATTC
77785131 CCTTTTAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
AACAAATTAATTC
Found at i:77785496 original size:31 final size:31
Alignment explanation
Indices: 77785439--77785517 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 31
77785429 AATATAAATG
* *
77785439 AGCTCAATTAAGCTA-AGTT-GAGTTGAATTA
1 AGCTCAA-TAAGCTAGAATTCGAGTTGAATCA
*
77785469 AGCTCAATGAGCTAGAATTCGAGTTGAATCA
1 AGCTCAATAAGCTAGAATTCGAGTTGAATCA
77785500 AGCTCAATAAGCTAGAAT
1 AGCTCAATAAGCTAGAAT
77785518 AGAGCTGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 6 0.14
30 10 0.23
31 27 0.63
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (31 bp):
AGCTCAATAAGCTAGAATTCGAGTTGAATCA
Found at i:77787234 original size:6 final size:6
Alignment explanation
Indices: 77787173--77787260 Score: 74
Period size: 6 Copynumber: 14.0 Consensus size: 6
77787163 CTCAATCTCT
77787173 TTTTTC TTTCTT- TTGTTCTC TTTTTC --TTTC TGTTTTC TTTCATTC
1 TTTTTC TTT-TTC TT-TT-TC TTTTTC TTTTTC T-TTTTC TTT--TTC
* *
77787218 TTTTTTC TTTATC TTTATC TTTTTC TTTTTC TTTTTC TTTTTC
1 -TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
77787261 ACATGCTTTT
Statistics
Matches: 70, Mismatches: 2, Indels: 20
0.76 0.02 0.22
Matches are distributed among these distances:
4 4 0.06
6 44 0.63
7 14 0.20
8 5 0.07
9 3 0.04
ACGTcount: A:0.03, C:0.18, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTTC
Found at i:77793464 original size:40 final size:40
Alignment explanation
Indices: 77793380--77793604 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
77793370 TTGAATGATG
* * * *
77793380 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77793420 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77793460 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77793499 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77793539 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77793580 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77793605 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77793626 original size:119 final size:119
Alignment explanation
Indices: 77793380--77793637 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
77793370 TTGAATGATG
* *
77793380 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
77793445 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
77793499 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
77793562 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
77793619 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77793638 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:77801590 original size:80 final size:79
Alignment explanation
Indices: 77801386--77801610 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 79
77801376 TTGAATGATG
* * * * *
77801386 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA--AGTGACCATATCCGGACTAAGAT-CCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTG-G-TACGAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCA
*
77801448 TTTGTGCGAGATACTAAT
62 TTTGTGCGAGATACTAAA
* *
77801466 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
*
77801531 TGCGAGTTACTAAA
66 TGCGAGATACTAAA
* * * *
77801545 TCTGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTACGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
77801609 TG
64 TG
77801611 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
77 1 0.01
78 2 0.02
79 62 0.50
80 58 0.46
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTACGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:77801616 original size:40 final size:40
Alignment explanation
Indices: 77801386--77801610 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
77801376 TTGAATGATG
* * * *
77801386 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
77801426 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77801466 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
77801505 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
77801545 TCTGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
77801586 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77801611 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:77803943 original size:15 final size:15
Alignment explanation
Indices: 77803911--77803939 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
77803901 ATTTTCTATG
77803911 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
77803926 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
77803940 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:77805116 original size:45 final size:42
Alignment explanation
Indices: 77805061--77805220 Score: 139
Period size: 45 Copynumber: 3.8 Consensus size: 42
77805051 AATATGGGTT
**
77805061 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATATGTGG
1 TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATAT-T-TAA
* *
77805105 TTACGTGTAAGACCATGTCTGGGACATCGGCATC-ATATTTAA
1 TT-CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTAA
* * * *
77805147 TTCGTTTAAGACC-CTATCTGGGACAGTGGCATCGATA-TGAGA
1 TTCGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTA-A
* * *
77805189 TAGCATGTAAGACCACGTC-GGGACGTTGGCAT
1 T-TCGTGTAAGACCACGTCTGGGACATTGGCAT
77805221 TGTATGATAT
Statistics
Matches: 94, Mismatches: 16, Indels: 14
0.76 0.13 0.11
Matches are distributed among these distances:
41 27 0.29
42 19 0.20
43 12 0.13
44 7 0.07
45 29 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (42 bp):
TTCGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTAA
Found at i:77810547 original size:16 final size:16
Alignment explanation
Indices: 77810528--77810558 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
77810518 GAAAAACATT
77810528 TTAAAATCGTCAGGAG
1 TTAAAATCGTCAGGAG
77810544 TTAAAATCGTCAGGA
1 TTAAAATCGTCAGGA
77810559 CTCGTCACAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.26
Consensus pattern (16 bp):
TTAAAATCGTCAGGAG
Found at i:77815536 original size:27 final size:26
Alignment explanation
Indices: 77815492--77815543 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
77815482 CTCGCTGCAA
*
77815492 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
77815519 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
77815544 GCAACCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:77815611 original size:26 final size:26
Alignment explanation
Indices: 77815582--77815641 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
77815572 CCACATATAT
*
77815582 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * * *
77815608 ATATCTATTTCTGGTGACTTCGTCACA
1 ATATCT-GTTCTGGTGACCTAGCCACA
77815635 ATATCTG
1 ATATCTG
77815642 GCAGCTTCGC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.22, C:0.23, G:0.18, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:77815613 original size:71 final size:67
Alignment explanation
Indices: 77815473--77815613 Score: 174
Period size: 67 Copynumber: 2.0 Consensus size: 67
77815463 GAGGAAGCGT
* * * * * *
77815473 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACTTCGTCACAA
1 TCTGGCAACCTCACTGCAATCTAGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
77815538 TA
66 TA
* *
77815540 TCTGGCAACCTCACTGCAATCTAGTGGCTTCGCCACATATATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAACCTCACTGCAATCTAGTGGCCTCGCCAC----ATATATCTGTTCTGGTGACCTAGCC
77815605 ACAATA
62 ACAATA
77815611 TCT
1 TCT
77815614 ATTTCTGGTG
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 32 0.52
71 30 0.48
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.30
Consensus pattern (67 bp):
TCTGGCAACCTCACTGCAATCTAGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:77825082 original size:64 final size:65
Alignment explanation
Indices: 77824971--77825178 Score: 201
Period size: 67 Copynumber: 3.2 Consensus size: 65
77824961 CATCATGTGT
*
77824971 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AGAGA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
77825036 TAG
63 TAG
* * * * *
77825039 ACAAGAGAGCTACAG-GATATATGTAGCTAGGTCGCATGCGTGATTCCAAGTGAAGGACACCATG
1 ACAAGAGAGCTACAGAGATATATGTAGCTAGGTCGCATGGGTGA-TACTA-TG-TGTACACCATG
77825103 TAG
63 TAG
* * * * * *
77825106 ACAAGAGAGCTA-TGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-
1 ACAAGAGAGCTACAGAGATATA-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTA
77825167 G
65 G
77825168 TACAAGAGAGC
1 -ACAAGAGAGC
77825179 CGAACTATAT
Statistics
Matches: 117, Mismatches: 17, Indels: 17
0.77 0.11 0.11
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 23 0.20
65 9 0.08
66 19 0.16
67 31 0.26
68 15 0.13
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.23
Consensus pattern (65 bp):
ACAAGAGAGCTACAGAGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG
Found at i:77830293 original size:13 final size:13
Alignment explanation
Indices: 77830275--77830303 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
77830265 TTTAGTTTAA
77830275 TTAGTTAATTAGT
1 TTAGTTAATTAGT
77830288 TTAGTTAATTAGT
1 TTAGTTAATTAGT
77830301 TTA
1 TTA
77830304 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:77834818 original size:17 final size:20
Alignment explanation
Indices: 77834782--77834822 Score: 61
Period size: 17 Copynumber: 2.2 Consensus size: 20
77834772 GAGGAAGAAC
77834782 AAAAAATACAAATATAAATA
1 AAAAAATACAAATATAAATA
77834802 AAAAAATA-AAAT-T-AATA
1 AAAAAATACAAATATAAATA
77834819 AAAA
1 AAAA
77834823 GTCAATTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 1 0.05
19 4 0.19
20 8 0.38
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAAAATACAAATATAAATA
Found at i:77852104 original size:28 final size:28
Alignment explanation
Indices: 77852042--77852107 Score: 123
Period size: 28 Copynumber: 2.4 Consensus size: 28
77852032 CATGTCCATG
*
77852042 GCCCGTATCCCTCACACGGCCATGACAC
1 GCCCGTGTCCCTCACACGGCCATGACAC
77852070 GCCCGTGTCCCTCACACGGCCATGACAC
1 GCCCGTGTCCCTCACACGGCCATGACAC
77852098 GCCCGTGTCC
1 GCCCGTGTCC
77852108 TAGCCTGTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.17, C:0.47, G:0.21, T:0.15
Consensus pattern (28 bp):
GCCCGTGTCCCTCACACGGCCATGACAC
Found at i:77853209 original size:49 final size:47
Alignment explanation
Indices: 77853091--77853453 Score: 182
Period size: 46 Copynumber: 7.7 Consensus size: 47
77853081 AAGGTGTAAT
* *
77853091 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
* ** * * *
77853138 GTCGATGCCATGTCGTAGACATGGTCTTATAGTGACT-ATCGAAATCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATC-AA
* * * * * *
77853187 GCCGATGCCATGTCCCAAACATGATCTTTCATTGGCTC-TCACATGTC-C
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCA-A--TCAA
* *
77853235 GTACCGATGCCATGTCCCAGACATGGTCTTACATTGACACATC--TCATA
1 G--CCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCA-A
* * * * *
77853283 GTCGAT-ACATGTCCCAGACAT-GTCTTAGACTGGCTTACATC--TCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-T-CATCAATC-AA
* *
77853329 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAACTC-TC-GTCTTAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATC--AA
* * * * ***
77853374 TGTCGTTGCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATC--AATCAA
*
77853423 GCTGATG-CATGTCCCAGACAT-GTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
77853454 AGCCCACAAA
Statistics
Matches: 242, Mismatches: 50, Indels: 49
0.71 0.15 0.14
Matches are distributed among these distances:
43 2 0.01
44 13 0.05
45 16 0.07
46 59 0.24
47 59 0.24
48 25 0.10
49 31 0.13
50 34 0.14
51 3 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAA
Found at i:77853409 original size:94 final size:93
Alignment explanation
Indices: 77853189--77853454 Score: 260
Period size: 94 Copynumber: 2.8 Consensus size: 93
77853179 AAATCGAGGC
* * * *
77853189 CGATGCCATGTCCCAAACATGATCTTTCATTGGCTCTCACATGTCCGTA--CCGATGCCATGTCC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCT-ACATAT-CG-AGGCCGATG-CATGTCC
* *
77853252 CAGACATGGTCTTACATTGACACATCTCATAGT
62 CAGACAT-GTCTTACACTAACACATCTCATAGT
* * * *
77853285 CGAT-ACATGTCCCAGACAT-GTCTTAGACTGGCT-TACATCTCGAGGCCGATGCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCAGA
* *
77853347 CATGTCTTACACTAACTC-TCGTCTTAATGT
66 CATGTCTTACACTAACACATC-TCAT-A-GT
* * *
77853377 CGTTGCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTGGCTGATGCATGTCCCAG
1 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACAT-ATCGAGGCCGATGCATGTCCCAG
77853440 ACATGTCTTACACTA
65 ACATGTCTTACACTA
77853455 GCCCACAAAT
Statistics
Matches: 143, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
89 2 0.01
90 16 0.11
91 17 0.12
92 16 0.11
93 14 0.10
94 59 0.41
95 15 0.10
96 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (93 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTACATATCGAGGCCGATGCATGTCCCAGA
CATGTCTTACACTAACACATCTCATAGT
Found at i:77856191 original size:50 final size:48
Alignment explanation
Indices: 77856069--77856202 Score: 189
Period size: 49 Copynumber: 2.7 Consensus size: 48
77856059 CATGGGTAAA
*
77856069 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCATCTTC
1 GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCATCTCC
* * *
77856117 GAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA-CATAACC
1 G-TGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCATC-T--CC
77856168 GTGCCGATGCCATGTCCTAGACATGGTCTTACACT
1 GTGCCGATGCCATGTCCTAGACATGGTCTTACACT
77856203 GACACATCTT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
48 2 0.03
49 40 0.53
50 32 0.42
51 2 0.03
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (48 bp):
GTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGCTATCATCTCC
Found at i:77857576 original size:34 final size:34
Alignment explanation
Indices: 77857533--77857600 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
77857523 TTTGTGGTCC
77857533 TAAGACCACTATTCCGACTAGGCCCTAAATCAGG
1 TAAGACCACTATTCCGACTAGGCCCTAAATCAGG
77857567 TAAGACCACTATTCCGACTAGGCCCTAAATCAGG
1 TAAGACCACTATTCCGACTAGGCCCTAAATCAGG
77857601 CTGTTACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (34 bp):
TAAGACCACTATTCCGACTAGGCCCTAAATCAGG
Found at i:77869769 original size:73 final size:73
Alignment explanation
Indices: 77869680--77869828 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 73
77869670 TATAAGATAA
*
77869680 AATTTTATGCTTAGACTCCTTAATGAGTCTAGTTTCAAACAAAATAAATGAAAATATATTTTGAA
1 AATTTTATGCTTAGACTCCTTAATGAGTCTAGTTTCAAACAAAATAAACGAAAATATATTTTGAA
77869745 TTCTGTAC
66 TTCTGTAC
77869753 AATTTTATGCTTAGACTCCTTAATGAGTCTAGTTTCAAACAAAATAAACGAAAATATATTTTGAA
1 AATTTTATGCTTAGACTCCTTAATGAGTCTAGTTTCAAACAAAATAAACGAAAATATATTTTGAA
77869818 TTCTGTAC
66 TTCTGTAC
77869826 AAT
1 AAT
77869829 GAGAAATTAA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.39, C:0.13, G:0.11, T:0.38
Consensus pattern (73 bp):
AATTTTATGCTTAGACTCCTTAATGAGTCTAGTTTCAAACAAAATAAACGAAAATATATTTTGAA
TTCTGTAC
Found at i:77870445 original size:47 final size:47
Alignment explanation
Indices: 77870391--77870584 Score: 203
Period size: 47 Copynumber: 4.1 Consensus size: 47
77870381 TTAGGATGTT
*
77870391 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
* * *
77870438 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--TGTGTATATA--TGAGATAAGGCCGAATGGCTA
** * *
77870489 ATGTGATGAATGTGAACATGTATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
* * * * * *
77870536 ATGCGA--AATGTGTATGAGATAGATATGAGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAATGTG-TATATATGAGATAAGGCCGAATGGCTA
77870582 ATG
1 ATG
77870585 CGAAACGTGT
Statistics
Matches: 126, Mismatches: 16, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
45 8 0.06
46 27 0.21
47 40 0.32
49 16 0.13
51 35 0.28
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCTA
Found at i:77870492 original size:51 final size:48
Alignment explanation
Indices: 77870391--77870538 Score: 196
Period size: 51 Copynumber: 3.1 Consensus size: 48
77870381 TTAGGATGTT
*
77870391 ATGTGATGAATGTGAA-TGTGTATATATG-AGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACTGT-TATATATGTGGATAAGGCCGAATGGCAA
*
77870438 ATGTGATGAATGTGAACCTGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-CTGT-TATATATGTG-GATAAGGCCGAATGGCAA
*
77870489 ATGTGATGAATGTGAACATG-TATATATGTGG-TAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAAC-TGTTATATATGTGGATAAGGCCGAATGGCAA
77870536 ATG
1 ATG
77870539 CGAAATGTGT
Statistics
Matches: 92, Mismatches: 4, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
47 34 0.37
48 1 0.01
49 21 0.23
50 1 0.01
51 35 0.38
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (48 bp):
ATGTGATGAATGTGAACTGTTATATATGTGGATAAGGCCGAATGGCAA
Found at i:77870648 original size:46 final size:46
Alignment explanation
Indices: 77870512--77870648 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
77870502 GAACATGTAT
* *
77870512 ATATGTGGTAAGGCCGAATGGCTAATGCGAAATGTGTATGAGATAG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* *
77870558 ATATGAGGTAAAGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
* * * *
77870604 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
77870649 TGTATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (46 bp):
ATATGTGGTAAAGCCGAATGGCTAATGCGAAATGTGTATGAGATGG
Found at i:77875395 original size:79 final size:78
Alignment explanation
Indices: 77875293--77875515 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
77875283 GCTCCTCGTT
* *
77875293 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
77875358 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
77875373 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
77875436 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
77875451 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
77875514 GA
63 GA
77875516 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:77875410 original size:39 final size:40
Alignment explanation
Indices: 77875293--77875515 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
77875283 GCTCCTCGTT
* *
77875293 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
77875333 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
77875373 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
77875412 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
77875451 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
77875492 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77875516 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:77880830 original size:30 final size:29
Alignment explanation
Indices: 77880794--77880858 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 29
77880784 AATCGGATGT
*
77880794 TTTGGCACTAAGTGTGCAATTTAAACTGGC
1 TTTGGCACTAAGTGTGCAATTT-AACTAGC
*
77880824 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGCAATTTAACTAGC
77880853 TTTGGC
1 TTTGGC
77880859 TACTTGAGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 12 0.36
30 21 0.64
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGCAATTTAACTAGC
Found at i:77882272 original size:6 final size:6
Alignment explanation
Indices: 77882249--77882358 Score: 73
Period size: 6 Copynumber: 17.8 Consensus size: 6
77882239 TATCAAAACT
* * * * *
77882249 AGAATC AAAATG AGAATC AGAATC AGAATT AG-GTGAC AGAATT AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
77882298 AGAATC AGAATT AG-GTGAC AGAATC AGAATC AGTATC AGGTAAT- AGAATC
1 AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC
77882348 AGAATC AGAAT
1 AGAATC AGAAT
77882359 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
5 5 0.06
6 64 0.81
7 6 0.08
8 4 0.05
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:77882295 original size:25 final size:25
Alignment explanation
Indices: 77882261--77882358 Score: 106
Period size: 25 Copynumber: 3.7 Consensus size: 25
77882251 AATCAAAATG
77882261 AGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATTAGGTGAC
77882286 AGAATTAGAATCAGAATCAGAATTAGGTGAC
1 ------AGAATCAGAATCAGAATTAGGTGAC
* * * *
77882317 AGAATCAGAATCAGTATCAGGTAAT
1 AGAATCAGAATCAGAATTAGGTGAC
77882342 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
77882359 GTGAATGCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
25 37 0.60
31 25 0.40
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (25 bp):
AGAATCAGAATCAGAATTAGGTGAC
Found at i:77882299 original size:31 final size:31
Alignment explanation
Indices: 77882261--77882336 Score: 134
Period size: 31 Copynumber: 2.5 Consensus size: 31
77882251 AATCAAAATG
*
77882261 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
77882292 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
*
77882323 AGAATCAGTATCAG
1 AGAATCAGAATCAG
77882337 GTAATAGAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATTAGGTGACAGAATC
Found at i:77882351 original size:31 final size:30
Alignment explanation
Indices: 77882261--77882358 Score: 107
Period size: 31 Copynumber: 3.4 Consensus size: 30
77882251 AATCAAAATG
* *
77882261 AGAATCAGAATCAGAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATTAGGT-ATAGAATC
77882292 AGAATCAGAATCAGAATTAGG--T-G-A-C
1 AGAATCAGAATCAGAATTAGGTATAGAATC
* *
77882317 AGAATCAGAATCAGTATCAGGTAATAGAATC
1 AGAATCAGAATCAGAATTAGGT-ATAGAATC
77882348 AGAATCAGAAT
1 AGAATCAGAAT
77882359 GTGAATGCAA
Statistics
Matches: 57, Mismatches: 4, Indels: 12
0.78 0.05 0.16
Matches are distributed among these distances:
25 19 0.33
26 1 0.02
27 1 0.02
28 1 0.02
29 1 0.02
30 1 0.02
31 33 0.58
ACGTcount: A:0.46, C:0.11, G:0.21, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAGAATTAGGTATAGAATC
Found at i:77884469 original size:39 final size:40
Alignment explanation
Indices: 77884374--77884596 Score: 257
Period size: 39 Copynumber: 5.7 Consensus size: 40
77884364 TTGAATGATG
*
77884374 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
77884412 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
77884453 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
77884492 TCCGGGCTAAG-CCCGAAGGCATTTGTGCAAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
77884531 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
77884570 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
77884597 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 92 0.57
40 58 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:77884560 original size:79 final size:81
Alignment explanation
Indices: 77884374--77884596 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 81
77884364 TTGAATGATG
* * *
77884374 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
* *
77884436 TTGTGCGAGATACTAAT
65 TTGTGCAAGATACTAAA
77884453 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
77884514 TTGTGCAAGTTACTAAA
65 TTGTGCAAGATACTAAA
* * * * *
77884531 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
77884595 TG
66 TG
77884597 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 45 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCAAGATACTAAA
Found at i:77884618 original size:79 final size:79
Alignment explanation
Indices: 77884374--77884629 Score: 199
Period size: 79 Copynumber: 3.3 Consensus size: 79
77884364 TTGAATGATG
* * * *
77884374 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** * *
77884435 TTTGTGCGAGAT-ACTAAT
62 TTTGAACAAG-TGACTAAA
* *
77884453 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
77884517 TGCAAGTTACTAAA
66 AACAAGTGACTAAA
*
77884531 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
* *
77884594 TTGAACGAG-GAGCTATA
63 TTGAACAAGTGA-CTAAA
* *
77884611 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
77884630 TACGTGATTT
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
77 1 0.01
78 45 0.30
79 69 0.46
80 35 0.23
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACAAGTGACTAAA
Found at i:77892576 original size:40 final size:39
Alignment explanation
Indices: 77892354--77892614 Score: 327
Period size: 39 Copynumber: 6.6 Consensus size: 39
77892344 TTGAATGATG
*
77892354 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* **
77892392 ATCCGGACTAAGATCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
77892432 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
77892471 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
77892510 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
77892549 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
77892588 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
77892615 AACGAGGAGC
Statistics
Matches: 200, Mismatches: 15, Indels: 13
0.88 0.07 0.06
Matches are distributed among these distances:
38 7 0.04
39 135 0.68
40 57 0.28
41 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:77894219 original size:26 final size:26
Alignment explanation
Indices: 77894173--77894279 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
77894163 GGGGCAAAAT
* * *
77894173 GGTAATTTTTCCCCACAAGGGTATCTC
1 GGTAATTTTACCCTAC-AGGGTATTTC
77894200 GGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACA-GGGTATTTC
*
77894227 GGT-ATTTCTACCCAACCAGGGTATTTC
1 GGTAATTT-TACCCTA-CAGGGTATTTC
** *
77894254 AATAATTCTACCCTACAGGGGTATTT
1 GGTAATTTTACCCTACA-GGGTATTT
77894280 TAATAATTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
26 7 0.10
27 55 0.82
28 5 0.07
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.35
Consensus pattern (26 bp):
GGTAATTTTACCCTACAGGGTATTTC
Found at i:77894278 original size:27 final size:27
Alignment explanation
Indices: 77894202--77894287 Score: 102
Period size: 27 Copynumber: 3.2 Consensus size: 27
77894192 GGTATCTCGG
* **
77894202 TAATTTTACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCAA
* *
77894229 TATTTCTACCCAACCA-GGGTATTTCAA
1 TAATTCTACCCTA-CAGGGGTATTTCAA
*
77894256 TAATTCTACCCTACAGGGGTATTTTAA
1 TAATTCTACCCTACAGGGGTATTTCAA
77894283 TAATT
1 TAATT
77894288 TTGTAAATCA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.04
27 45 0.92
28 2 0.04
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:77896974 original size:45 final size:48
Alignment explanation
Indices: 77896806--77896981 Score: 182
Period size: 45 Copynumber: 3.7 Consensus size: 48
77896796 TCTATTGTGA
* *
77896806 GGTCGCATGTGTAGTACTAAATGCAGGCTACTA-TGCTACCCGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAGTG-TACCCGATAA-TT
* * * * * * *
77896855 CGATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGATA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTA-GTGTACCCGATAATT
*
77896905 GGTCACGTGTGTA-TACTAAGTGCAGGCTAC-AGTGTA-CCGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTAGTGTACCCGATAATT
*
77896950 GGTCGCATGTGTAGTACT-AGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
77896982 TGCGTACCAG
Statistics
Matches: 106, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 29 0.27
46 10 0.09
47 1 0.01
48 16 0.15
49 12 0.11
50 29 0.27
51 7 0.07
52 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTAGTGTACCCGATAATT
Found at i:77907819 original size:43 final size:42
Alignment explanation
Indices: 77907747--77907947 Score: 163
Period size: 43 Copynumber: 4.7 Consensus size: 42
77907737 NNNNCCTAAC
* * ** *
77907747 GTGGACTTACATGTAATCTTATATCGATGCCACTATCCTAGATA
1 GTGGTCTTACATGTAAACACATATCGATGCCAC-ATCCCAGA-A
* * * *
77907791 G-GGTCTTACTTGTAAACACATATAGATGCCAACGTCCCAGAC
1 GTGGTCTTACATGTAAACACATATCGATGCC-ACATCCCAGAA
* * *
77907833 GTGGTCTTACATGTAATCACATATCGATGCCAACGTCCCAGAT
1 GTGGTCTTACATGTAAACACATATCGATGCC-ACATCCCAGAA
* * * * *
77907876 GTGGTCTTACACGTAATCACATATCGATACCAACGTCCCAGGCA
1 GTGGTCTTACATGTAAACACATATCGATGCC-ACATCCCA-GAA
* *
77907920 -TGGTCTTACACGTAATCACATATCGATG
1 GTGGTCTTACATGTAAACACATATCGATG
77907948 TCTATATACA
Statistics
Matches: 136, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
42 1 0.01
43 131 0.96
44 4 0.03
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
GTGGTCTTACATGTAAACACATATCGATGCCACATCCCAGAA
Found at i:77907897 original size:86 final size:86
Alignment explanation
Indices: 77907745--77907947 Score: 257
Period size: 86 Copynumber: 2.4 Consensus size: 86
77907735 NNNNNNCCTA
* ** * **
77907745 ACGTGGACTTACATGTAATCTTATATCGATGCCACTATCCTAGATAGGGTCTTACTTGTAAACAC
1 ACGTGGTCTTACATGTAATCACATATCGATGCCACTATCCCAGATAGGGTCTTACACGTAAACAC
*
77907810 ATATAGATGCCAACGTCCCAG
66 ATATAGATACCAACGTCCCAG
* *
77907831 ACGTGGTCTTACATGTAATCACATATCGATGCCAAC-GTCCCAGAT-GTGGTCTTACACGTAATC
1 ACGTGGTCTTACATGTAATCACATATCGATGCC-ACTATCCCAGATAG-GGTCTTACACGTAAAC
*
77907894 ACATATCGATACCAACGTCCCAG
64 ACATATAGATACCAACGTCCCAG
* * *
77907917 GCATGGTCTTACACGTAATCACATATCGATG
1 ACGTGGTCTTACATGTAATCACATATCGATG
77907948 TCTATATACA
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
85 1 0.01
86 99 0.97
87 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (86 bp):
ACGTGGTCTTACATGTAATCACATATCGATGCCACTATCCCAGATAGGGTCTTACACGTAAACAC
ATATAGATACCAACGTCCCAG
Found at i:77909290 original size:377 final size:377
Alignment explanation
Indices: 77908596--77909316 Score: 1336
Period size: 376 Copynumber: 1.9 Consensus size: 377
77908586 TTCCTTAAGT
77908596 CCCTAACATCCCATTAATTTCATTTATTTCACATTTTGACCCCTAAATTTGCAAATTTCACAATT
1 CCCTAACATCCCATTAATTTCATTTATTTCACATTTTGACCCCTAAATTTGCAAATTTCACAATT
*
77908661 TAATCCTTAATAAGCATTTTTATCAAAAATCACTTAATTAAACATAATAATCTATCAACAAATAT
66 TAATCCTTAATAAGCATTTTTATCAAAAATCACTTAATTAAACATAATAATCTATCAAAAAATAT
* *
77908726 TTATTTTTCATCATCAAACAACAAAAACATGAAGCTATCATCAATGAAAAATTACAAATTCATCA
131 TTATTTTTCATCATCAAACAACAAAAACATCAAGCTATCATCAATGAAAAATCACAAATTCATCA
*
77908791 TAAATTCTAAAAATTAGGGCATGGGCTAGCTAGAATACGAAGCAATGATCTCAAAAACATAAAAA
196 TAAATTCTAAAAATTAGGGCATGGGCTAGCTAGAATACGAAGCAACGATCTCAAAAACATAAAAA
*
77908856 TTATCAAAAGTCGAGCAAAGAACATACCTAAATCAAGATTTAAAGGTGTCAAAATTCACCAAGCT
261 TTATCAAAAGTCGAGCAAAGAACATACCTAAATCAAGATTTAAAGGTGCCAAAATTCACCAAGCT
*
77908921 TCGAACCTTATTTCTTTTCAAGCTTATTTCAAACCTTATTTTAAGCTTCAAA
326 TCAAACCTTATTTCTTTTCAAGCTTATTTCAAACCTTATTTTAAGCTTCAAA
77908973 CCCTAACATCCCATTAATTTCATTTATTTCACATTTTGACCCCTAAATTTGCAAATTTCACAA-T
1 CCCTAACATCCCATTAATTTCATTTATTTCACATTTTGACCCCTAAATTTGCAAATTTCACAATT
*
77909037 TAATCCTTAATAAGGATTTTTATCAAAAATCACTTAATTAAACATAATAATCTATCAAAAAATAT
66 TAATCCTTAATAAGCATTTTTATCAAAAATCACTTAATTAAACATAATAATCTATCAAAAAATAT
*
77909102 TTATTTTTCATCATCAAACAACAAAAACATCAAGCTATCATCAATGAAAAATCACAAATTTATCA
131 TTATTTTTCATCATCAAACAACAAAAACATCAAGCTATCATCAATGAAAAATCACAAATTCATCA
*
77909167 TAAATTCTAAAAATTAGGGCATGGGCTAGCTAGAATACGAAGTAACGATCTCAAAAAACATAAAA
196 TAAATTCTAAAAATTAGGGCATGGGCTAGCTAGAATACGAAGCAACGATCTC-AAAAACATAAAA
*
77909232 ATTATCAAAAGTCGAGCAAAGAACATACCTAAATCAAGATTTAAAGGTGCCGAAATTCACCAAGC
260 ATTATCAAAAGTCGAGCAAAGAACATACCTAAATCAAGATTTAAAGGTGCCAAAATTCACCAAGC
77909297 TTCAAACCTTATTTCTTTTC
325 TTCAAACCTTATTTCTTTTC
77909317 TCTATATTCG
Statistics
Matches: 333, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
376 176 0.53
377 157 0.47
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (377 bp):
CCCTAACATCCCATTAATTTCATTTATTTCACATTTTGACCCCTAAATTTGCAAATTTCACAATT
TAATCCTTAATAAGCATTTTTATCAAAAATCACTTAATTAAACATAATAATCTATCAAAAAATAT
TTATTTTTCATCATCAAACAACAAAAACATCAAGCTATCATCAATGAAAAATCACAAATTCATCA
TAAATTCTAAAAATTAGGGCATGGGCTAGCTAGAATACGAAGCAACGATCTCAAAAACATAAAAA
TTATCAAAAGTCGAGCAAAGAACATACCTAAATCAAGATTTAAAGGTGCCAAAATTCACCAAGCT
TCAAACCTTATTTCTTTTCAAGCTTATTTCAAACCTTATTTTAAGCTTCAAA
Found at i:77913052 original size:30 final size:30
Alignment explanation
Indices: 77913018--77913078 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
77913008 TCCTTAACTC
77913018 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
77913048 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
77913078 A
1 A
77913079 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:77915747 original size:27 final size:27
Alignment explanation
Indices: 77915714--77915777 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
77915704 TTGGGATTTA
* *
77915714 TGGGCCATAAGGGTGTGTGGGCCCACT
1 TGGGCCACAAGGGCGTGTGGGCCCACT
*
77915741 TGGGCCACAAGGGCGTGTGGGCCCATT
1 TGGGCCACAAGGGCGTGTGGGCCCACT
*
77915768 TGGCCCACAA
1 TGGGCCACAA
77915778 AATGGGCCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.17, C:0.27, G:0.38, T:0.19
Consensus pattern (27 bp):
TGGGCCACAAGGGCGTGTGGGCCCACT
Found at i:77916232 original size:59 final size:59
Alignment explanation
Indices: 77916140--77916272 Score: 203
Period size: 59 Copynumber: 2.3 Consensus size: 59
77916130 GCTGCGATAT
* * * * *
77916140 TGGTGTGTTTGCTGAGTGGGTTAACTTTGTCCCCACATGGTGTGTTGGTTGGTATGGAG
1 TGGTGTGTTGGCTGGGTGGGTCAACTTTGTCCCCACATGGTGTGTTGGTTGGTACGAAG
*
77916199 TGGTGTGTTGGCTGGGTGGGTCGACTTTGTCCCCACATGGTGTGTTGGTTGGTACGAAG
1 TGGTGTGTTGGCTGGGTGGGTCAACTTTGTCCCCACATGGTGTGTTGGTTGGTACGAAG
*
77916258 TAGTGTGTTGGCTGG
1 TGGTGTGTTGGCTGG
77916273 TTTGGGTTGG
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 67 1.00
ACGTcount: A:0.11, C:0.13, G:0.40, T:0.37
Consensus pattern (59 bp):
TGGTGTGTTGGCTGGGTGGGTCAACTTTGTCCCCACATGGTGTGTTGGTTGGTACGAAG
Found at i:77919317 original size:28 final size:28
Alignment explanation
Indices: 77919249--77919430 Score: 276
Period size: 28 Copynumber: 6.5 Consensus size: 28
77919239 CATGAGATTG
* * * * *
77919249 GCACTAAGTGTACGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
77919278 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77919306 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77919334 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
77919362 GCACTAAGTGTGCAAGTTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
77919390 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
77919417 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
77919431 GACTTAATAT
Statistics
Matches: 143, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
27 23 0.16
28 103 0.72
29 17 0.12
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:77919935 original size:198 final size:199
Alignment explanation
Indices: 77919592--77919993 Score: 788
Period size: 198 Copynumber: 2.0 Consensus size: 199
77919582 GTGACAATTA
77919592 TAACTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTG
1 TAACTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTG
77919657 TAACGAAAATACAATGATGTATGAAAATGCCTCAAATATCCTATTGATTAGTATATGGAATGTGA
66 TAACGAAAATACAATGATGTATGAAAATGCCTCAAATATCCTATTGATTAGTATATGGAATGTGA
77919722 ATGCATGACTTGGTATGAGATTGAACCGATAGGTCTAAGGAACTATGGTATGGTTCGGTATGGAT
131 ATGCATGACTTGGTATGAGATTGAACCGATAGGTCTAAGGAACTATGGTATGGTTCGGTATGGAT
77919787 GGAG
196 GGAG
77919791 TAAC-GAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTG
1 TAACTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTG
77919855 TAACGAAAATACAATGATGTATGAAAATGCCTCAAATATCCTATTGATTAGTATATGGAATGTGA
66 TAACGAAAATACAATGATGTATGAAAATGCCTCAAATATCCTATTGATTAGTATATGGAATGTGA
*
77919920 ATGCATGACTTGGTATGAGATTGAACCGATAGGTTTAAGGAACTATGGTATGGTTCGGTATGGAT
131 ATGCATGACTTGGTATGAGATTGAACCGATAGGTCTAAGGAACTATGGTATGGTTCGGTATGGAT
77919985 GGAG
196 GGAG
77919989 TAACT
1 TAACT
77919994 AGCCTCATTC
Statistics
Matches: 201, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
198 197 0.98
199 4 0.02
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.31
Consensus pattern (199 bp):
TAACTGAAGTCACGTACATAAGATTTATCGTGGAATAGGTGAAAGGTCGTTTAGTTGTATGATTG
TAACGAAAATACAATGATGTATGAAAATGCCTCAAATATCCTATTGATTAGTATATGGAATGTGA
ATGCATGACTTGGTATGAGATTGAACCGATAGGTCTAAGGAACTATGGTATGGTTCGGTATGGAT
GGAG
Found at i:77927335 original size:26 final size:26
Alignment explanation
Indices: 77927306--77927386 Score: 126
Period size: 26 Copynumber: 3.1 Consensus size: 26
77927296 TTGGCCACAT
77927306 ATACTGATATTGGCAGCTTTGCTGCG
1 ATACTGATATTGGCAGCTTTGCTGCG
* *
77927332 ATACTGTTATTGGCAGCTTTACTGCG
1 ATACTGATATTGGCAGCTTTGCTGCG
* *
77927358 TTACTGATACTGGCAGCTTTGCTGCG
1 ATACTGATATTGGCAGCTTTGCTGCG
77927384 ATA
1 ATA
77927387 TTATTACTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.36
Consensus pattern (26 bp):
ATACTGATATTGGCAGCTTTGCTGCG
Found at i:77927394 original size:26 final size:26
Alignment explanation
Indices: 77927316--77927414 Score: 92
Period size: 26 Copynumber: 3.8 Consensus size: 26
77927306 ATACTGATAT
* * *
77927316 TGGCAGCTTTGCTGCGATACTGTTAT
1 TGGCAGCTTTGCTGCGATATTATTAC
* * *
77927342 TGGCAGCTTTACTGCGTTACTGA-TAC
1 TGGCAGCTTTGCTGCGATA-TTATTAC
77927368 TGGCAGCTTTGCTGCGATATTATTAC
1 TGGCAGCTTTGCTGCGATATTATTAC
* * **
77927394 TTGTAGCTTTGCCACGATATT
1 TGGCAGCTTTGCTGCGATATT
77927415 GGTGTGTTGG
Statistics
Matches: 58, Mismatches: 13, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
25 2 0.03
26 56 0.97
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.38
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCGATATTATTAC
Found at i:77930495 original size:25 final size:25
Alignment explanation
Indices: 77930441--77930498 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
77930431 AGTTGTAAAT
* *
77930441 GGTAAGCTCCTCTGAATTGAATAAT
1 GGTAAGCTCCTCCGAATTGAATAAC
* *
77930466 AGTAAGGTCCTCCG-ATCTGAATAAC
1 GGTAAGCTCCTCCGAAT-TGAATAAC
77930491 GGTAAGCT
1 GGTAAGCT
77930499 TGCGAGCTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAATTGAATAAC
Found at i:77942214 original size:28 final size:28
Alignment explanation
Indices: 77942183--77942252 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
77942173 ATATATGTAT
*
77942183 ATGGCACTTAGTGTGTAAAATATTAAGA
1 ATGGCACTTAGTGTGCAAAATATTAAGA
* * * *
77942211 ATGGCACTTGGTGTGCAAGATATTGAGT
1 ATGGCACTTAGTGTGCAAAATATTAAGA
*
77942239 ATGGTACTTAGTGT
1 ATGGCACTTAGTGT
77942253 ATGAGACATC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.30, C:0.09, G:0.27, T:0.34
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCAAAATATTAAGA
Found at i:77943996 original size:26 final size:26
Alignment explanation
Indices: 77943961--77944012 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
77943951 TTTATTTGAA
77943961 TGAAATTTTATGGCCCGATTTTATGT
1 TGAAATTTTATGGCCCGATTTTATGT
*
77943987 TGAAATTTTATGGCTCGATTTTATGT
1 TGAAATTTTATGGCCCGATTTTATGT
77944013 GCTTGTGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.10, G:0.19, T:0.48
Consensus pattern (26 bp):
TGAAATTTTATGGCCCGATTTTATGT
Found at i:77945884 original size:27 final size:27
Alignment explanation
Indices: 77945828--77945886 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
77945818 TACGTCTCAA
* *
77945828 AGGGGCATATCAGTCATTTTACCATGT
1 AGGGGCATATCAGTCATTTCACAATGT
*
77945855 AGGGGCATTTCAGTCATTTCATCAAT-T
1 AGGGGCATATCAGTCATTTCA-CAATGT
77945882 AGGGG
1 AGGGG
77945887 GTCTAGATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.32
Consensus pattern (27 bp):
AGGGGCATATCAGTCATTTCACAATGT
Found at i:77947187 original size:30 final size:30
Alignment explanation
Indices: 77947151--77947210 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
77947141 TTCACCTTCT
*
77947151 CCTTTTGTCACTGGTCGAATACCCTCTTTC
1 CCTTTTGTCACTGGCCGAATACCCTCTTTC
77947181 CCTTTTGTCACTGGCCGAATACCCTCTTTC
1 CCTTTTGTCACTGGCCGAATACCCTCTTTC
77947211 TTCTTTCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.13, C:0.35, G:0.13, T:0.38
Consensus pattern (30 bp):
CCTTTTGTCACTGGCCGAATACCCTCTTTC
Found at i:77951187 original size:29 final size:29
Alignment explanation
Indices: 77951114--77951193 Score: 90
Period size: 29 Copynumber: 2.7 Consensus size: 29
77951104 CACTATGTGT
*
77951114 CGGTGATTATATTTATCAGATACTACGTAC
1 CGGTGATCATA-TTATCAGATACTACGTAC
* * *
77951144 CGATGA-CTATTTTATCAGATACTATGTAC
1 CGGTGATC-ATATTATCAGATACTACGTAC
*
77951173 TGGTGATCATATTATCAGATA
1 CGGTGATCATATTATCAGATA
77951194 GTTTGTATCG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
29 33 0.80
30 8 0.20
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (29 bp):
CGGTGATCATATTATCAGATACTACGTAC
Found at i:77958383 original size:40 final size:41
Alignment explanation
Indices: 77958331--77958414 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 41
77958321 AGTAATAGTG
*
77958331 ACAATATCTGTTTGGGCTTTAGCCCATCT-CAAT-ACAG-AA
1 ACAATATCTGTTTGGGCCTTAGCCCAT-TGCAATAACAGTAA
* *
77958370 ACAATCATGTGTTTGGGCCTTGGCCCATTGCAATAACAGTAA
1 ACAAT-ATCTGTTTGGGCCTTAGCCCATTGCAATAACAGTAA
77958412 ACA
1 ACA
77958415 GCGTAGTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
39 6 0.16
40 23 0.61
41 4 0.11
42 5 0.13
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (41 bp):
ACAATATCTGTTTGGGCCTTAGCCCATTGCAATAACAGTAA
Found at i:77958982 original size:27 final size:27
Alignment explanation
Indices: 77958832--77958974 Score: 223
Period size: 27 Copynumber: 5.3 Consensus size: 27
77958822 GGAGCATTTT
*
77958832 AGTCATTTTACCATATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
* *
77958859 AGTTATTTTACCTCATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
* *
77958886 AGTCATTTTACCTCATAGGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
*
77958913 AGTCATTTTACCACTTAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
*
77958940 AGTCATTTCACCACATAAGGGCAAAAC
1 AGTCATTTTACCACATAAGGGCAAAAC
77958967 AGTCATTT
1 AGTCATTT
77958975 CATCACATTG
Statistics
Matches: 106, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 106 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.27
Consensus pattern (27 bp):
AGTCATTTTACCACATAAGGGCAAAAC
Found at i:77959213 original size:17 final size:18
Alignment explanation
Indices: 77959191--77959226 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
77959181 AACACGTCCG
77959191 TGTGGGGCCCACA-GGCC
1 TGTGGGGCCCACACGGCC
77959208 TGTGGGGCCCACACGGCC
1 TGTGGGGCCCACACGGCC
77959226 T
1 T
77959227 ATTTCTGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.11, C:0.36, G:0.39, T:0.14
Consensus pattern (18 bp):
TGTGGGGCCCACACGGCC
Found at i:77961040 original size:46 final size:47
Alignment explanation
Indices: 77960987--77961203 Score: 223
Period size: 46 Copynumber: 4.6 Consensus size: 47
77960977 GTTGTTGGCT
*
77960987 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAGAGCC
* *
77961033 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CAC-TGA-GACAAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATGATG--AAGAGCC
* * * *
77961081 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAGAGCC
* * *
77961127 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAAGAGCC
*
77961173 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
77961204 ACTTGAGATG
Statistics
Matches: 146, Mismatches: 13, Indels: 22
0.81 0.07 0.12
Matches are distributed among these distances:
45 2 0.01
46 68 0.47
47 46 0.32
48 29 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAAGAGCC
Found at i:77961055 original size:47 final size:46
Alignment explanation
Indices: 77960987--77961252 Score: 245
Period size: 47 Copynumber: 5.7 Consensus size: 46
77960977 GTTGTTGGCT
* *
77960987 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCACA-GATGAGAGCC
** *
77961033 AGTGTAAGACCATGTCTAGGACATGGCATCGG-CACTGAGACAAGAGCT
1 AGTGTAAGA-CATGTCTAGGACATGGCATCGGCCAC--AGATGAGAGCC
* * *
77961081 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCAAGACGTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCAC-AGATG-AGAGCC
* * * *
77961127 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTAGGACATGGCATCGGCCAC-AGATGAGAGCC
* *** *
77961173 AGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGAGCC
1 AGTGTAAGA-CATGTCTAGGACATGGCATCGGCCACAGATGAGAGCC
* *
77961220 AATGTAAGACCGTGTCTAGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTAGGACATGGCATCGGC
77961253 ACCTTACCCA
Statistics
Matches: 186, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
45 1 0.01
46 71 0.38
47 83 0.45
48 30 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGGCATCGGCCACAGATGAGAGCC
Found at i:77961202 original size:94 final size:94
Alignment explanation
Indices: 77960984--77961254 Score: 320
Period size: 94 Copynumber: 2.9 Consensus size: 94
77960974 GTTGTTGTTG
* **
77960984 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATG-AGAGCCAGTGTAAGACCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTA-AGCCAGTGTAAGACCATGT
77961048 CTAGGACATGGCATCGGCACTGAGACAAGA
65 CTAGGACATGGCATCGGCACTGAGACAAGA
*
77961078 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGACGTAAGCCAGTGTAAGA-CATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGCCAGTGTAAGACCATGTC
* ** *
77961142 TGGGACAT-GCATCGGCTAC-GAGATGATA
66 TAGGACATGGCATCGGC-ACTGAGACAAGA
* * ** * * *
77961170 G-TCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGAGATGTGAGCCAATGTAAGACCGT
1 GCT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCAAGATGTAAGCCAGTGTAAGACCAT
77961233 GTCTAGGACATGGCATCGGCAC
63 GTCTAGGACATGGCATCGGCAC
77961255 CTTACCCACA
Statistics
Matches: 153, Mismatches: 17, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
91 1 0.01
92 24 0.16
93 48 0.31
94 71 0.46
95 9 0.06
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCAAGATGTAAGCCAGTGTAAGACCATGTC
TAGGACATGGCATCGGCACTGAGACAAGA
Found at i:77961242 original size:140 final size:141
Alignment explanation
Indices: 77960987--77961252 Score: 378
Period size: 140 Copynumber: 1.9 Consensus size: 141
77960977 GTTGTTGGCT
*
77960987 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTAG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
* * *
77961052 GACATGGCATCGGCACTGAGACAAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCA
66 GACATGGCATCGGCACTGAGACAAGAGCCAATGTAAGACATGTCTAGGACATGGCATCGGCCTCA
77961116 AGACGTAAGCC
131 AGACGTAAGCC
* * *
77961127 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCATGTCTA
*** *
77961191 GGACATGGCATC-G-ACTTGAGATGTGAGCCAATGTAAGACCGTGTCTAGGACATGGCATCGGC
65 GGACATGGCATCGGCAC-TGAGACAAGAGCCAATGTAAGA-CATGTCTAGGACATGGCATCGGC
77961253 ACCTTACCCA
Statistics
Matches: 111, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
138 2 0.02
139 18 0.16
140 82 0.74
141 9 0.08
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (141 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGGCACTGAGACAAGAGCCAATGTAAGACATGTCTAGGACATGGCATCGGCCTCA
AGACGTAAGCC
Found at i:77968311 original size:19 final size:19
Alignment explanation
Indices: 77968260--77968311 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
77968250 ATGCATTATT
*
77968260 ATTTATGCTTT-AATTGTG
1 ATTTATTCTTTGAATTGTG
* * *
77968278 TTATTATTGTATGAATTGTG
1 AT-TTATTCTTTGAATTGTG
77968298 ATTTATTCTTTGAA
1 ATTTATTCTTTGAA
77968312 CGAATTTGAA
Statistics
Matches: 25, Mismatches: 7, Indels: 3
0.71 0.20 0.09
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 8 0.32
ACGTcount: A:0.25, C:0.04, G:0.15, T:0.56
Consensus pattern (19 bp):
ATTTATTCTTTGAATTGTG
Found at i:77968458 original size:42 final size:42
Alignment explanation
Indices: 77968399--77968520 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 42
77968389 TAGGGTTAGT
*
77968399 TGAGATTACGTGTAAGACCATATCTAGGATATGGTATCGATA
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
* * *
77968441 TGAGATTTCGTGTAAGACCATAGT-TGGGCTATTGGCATCGATA
1 TGAGATTACGTGTAAGACCATA-TCTAGGATA-TGGCATCGATA
** * *
77968484 TGAGATCCCATGTAAGACCATATCTAGGATATAGCAT
1 TGAGATTACGTGTAAGACCATATCTAGGATATGGCAT
77968521 TGGTATGATA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTAGGATATGGCATCGATA
Found at i:77979750 original size:37 final size:37
Alignment explanation
Indices: 77979700--77979774 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
77979690 TTATTACGAA
* *
77979700 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
77979737 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
77979774 G
1 G
77979775 CCTTTAGAGC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:77979975 original size:47 final size:47
Alignment explanation
Indices: 77979897--77980103 Score: 288
Period size: 47 Copynumber: 4.4 Consensus size: 47
77979887 CCCTTCGGGA
* * * * * * *
77979897 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77979944 CCTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77979991 CTTATCACATATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77980038 CTTATCACACATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77980085 CTTATCACATATATACACT
1 CTTATCACATATATACACT
77980104 GTCTTGGCTG
Statistics
Matches: 142, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 142 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:77983923 original size:40 final size:40
Alignment explanation
Indices: 77983773--77983969 Score: 177
Period size: 40 Copynumber: 4.9 Consensus size: 40
77983763 CCGAATACAC
* * * ** *
77983773 GTCACCAGCATGATTGCTCTTCGGGGTTTAGCACGGATATA
1 GTCACTAGCACGAATGC-CTTCGGGACTTAGCCCGGATATA
* * *
77983814 -TCACTAGAATGAATGCTCCTCGGGACTTAGCCCGGATATA
1 GTCACTAGCACGAATGC-CTTCGGGACTTAGCCCGGATATA
* *
77983854 -TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATTTA
1 GTCACTAGCACGAATGC-CTTCGGGACTTAGCCCGGATATA
* * * *
77983894 GTAACTCGCACGAATGCCTTC-GGATCTTAGTCCGGATATG
1 GTCACTAGCACGAATGCCTTCGGGA-CTTAGCCCGGATATA
*
77983934 GTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
1 GTCAC-TAGCACGAATGCCTTCGGGACTTAGCCCGGA
77983970 CATCATTCGA
Statistics
Matches: 132, Mismatches: 20, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 3 0.02
40 107 0.81
41 22 0.17
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
GTCACTAGCACGAATGCCTTCGGGACTTAGCCCGGATATA
Found at i:77984319 original size:29 final size:29
Alignment explanation
Indices: 77984279--77984357 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
77984269 CTTAATAATC
*
77984279 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
**
77984309 AACTTGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
77984338 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
77984358 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.07
29 36 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:77984400 original size:43 final size:43
Alignment explanation
Indices: 77984339--77984441 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
77984329 TGCATTTCAA
77984339 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
77984382 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
77984425 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
77984442 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:77986381 original size:37 final size:37
Alignment explanation
Indices: 77986308--77986382 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
77986298 TTATTACGAA
* **
77986308 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGCCATCGG
*
77986345 GTCTTACCCGGACAAAAT-TCCCACACGTAGCCATCGG
1 GTCTTACCCGGACAAAATCT-CCACACGAAGCCATCGG
77986382 G
1 G
77986383 CCTTTAGAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
36 1 0.03
37 32 0.97
ACGTcount: A:0.27, C:0.32, G:0.20, T:0.21
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGCCATCGG
Found at i:77986583 original size:47 final size:47
Alignment explanation
Indices: 77986505--77986805 Score: 476
Period size: 47 Copynumber: 6.4 Consensus size: 47
77986495 CCCTTCGGGA
* * * * * * *
77986505 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
77986552 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
77986599 CTTATCACATATATAGACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77986646 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77986693 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
77986740 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
77986787 CTTATCACATATATACACT
1 CTTATCACATATATACACT
77986806 GTCTTGGCTG
Statistics
Matches: 235, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 235 1.00
ACGTcount: A:0.28, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78000509 original size:46 final size:46
Alignment explanation
Indices: 78000442--78000545 Score: 181
Period size: 46 Copynumber: 2.3 Consensus size: 46
78000432 TTGTAATTCA
*
78000442 TTTACCTCATATCCATCTCATACACGTTTCACATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACATTTCACATTAGCCATTCGGC
*
78000488 TTTACCTCATATCCATCTCATACACATTTCGCATTAGCCATTCGGC
1 TTTACCTCATATCCATCTCATACACATTTCACATTAGCCATTCGGC
*
78000534 TTTACCACATAT
1 TTTACCTCATAT
78000546 ATACACATCC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.25, C:0.32, G:0.08, T:0.36
Consensus pattern (46 bp):
TTTACCTCATATCCATCTCATACACATTTCACATTAGCCATTCGGC
Found at i:78000590 original size:47 final size:47
Alignment explanation
Indices: 78000559--78001177 Score: 1107
Period size: 47 Copynumber: 13.2 Consensus size: 47
78000549 CACATCCATG
*
78000559 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
78000606 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
78000653 TTCATCACATTGGCCATTCGGCCTTATCAC--ACATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
78000698 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
78000745 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
78000792 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
78000839 TTCATCACATTGGCCAGTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
78000886 TTCATCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
78000933 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCATA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
78000980 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGGTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
78001027 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
*
78001074 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
78001121 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATATTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
78001168 TTCATCACAT
1 TTCATCACAT
78001178 AAAATCCTAA
Statistics
Matches: 549, Mismatches: 21, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
45 43 0.08
47 506 0.92
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:78011386 original size:38 final size:38
Alignment explanation
Indices: 78011344--78011464 Score: 152
Period size: 38 Copynumber: 3.1 Consensus size: 38
78011334 ATATGCTAGA
78011344 ATTATATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGT
1 ATTATATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGT
* * * * *
78011382 ATTATATCCGGGTTAAATCCCGCAGGCCTAGTGCTAGT
1 ATTATATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGT
* *
78011420 ATTATATCTAAGTTTAAAGTCCCGTAGGCTTCGTGCTGGT
1 ATTATATCT-GGGTTAAA-TCCCGTAGGCTTCGTGCTGGT
*
78011460 GTTAT
1 ATTAT
78011465 GTTCGGGTTT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 41 0.60
39 6 0.09
40 21 0.31
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (38 bp):
ATTATATCTGGGTTAAATCCCGTAGGCTTCGTGCTGGT
Found at i:78013070 original size:43 final size:43
Alignment explanation
Indices: 78013009--78013187 Score: 304
Period size: 43 Copynumber: 4.2 Consensus size: 43
78012999 GCATGAAACT
*
78013009 CGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
*
78013052 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTTGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
78013095 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
* * **
78013138 CGGTGATGTGTATTCGGGTCTTCGTGCCTAGCAGGTTTAATGC
1 CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
78013181 CGGTGAT
1 CGGTGAT
78013188 TCGAGCAAGG
Statistics
Matches: 129, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.11, C:0.22, G:0.35, T:0.32
Consensus pattern (43 bp):
CGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGC
Found at i:78013405 original size:58 final size:58
Alignment explanation
Indices: 78013337--78013505 Score: 286
Period size: 58 Copynumber: 2.9 Consensus size: 58
78013327 CAAATGATTA
*
78013337 GAGGCACTGTGTGTGCAAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
*
78013395 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCAGTAATT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
* * *
78013453 GAGGCACTGTGTGTGCGAGTT-ATTCAACCGAGCACTATGTGTGCGAGATCGGT
1 GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGT
78013506 CAGTGGGCAC
Statistics
Matches: 105, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
57 29 0.28
58 76 0.72
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (58 bp):
GAGGCACTGTGTGTGCGAATTCCTTTAACCGAGCACTATGTGTGCGAGATCGGTAATT
Found at i:78013440 original size:29 final size:28
Alignment explanation
Indices: 78013340--78013498 Score: 115
Period size: 29 Copynumber: 5.5 Consensus size: 28
78013330 ATGATTAGAG
* *
78013340 GCACTGTGTGTGCAAATTCCTTTAACCGA
1 GCACTATGTGTGCGAATT-CTTTAACCGA
** **
78013369 GCACTATGTGTGCGAGA-TCGGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
*
78013397 GGCACTGTGTGTGCGAATTCCTTTAACCGA
1 -GCACTATGTGTGCGAATT-CTTTAACCGA
** **
78013427 GCACTATGTGTGCGAGA-TCAGTAATTGA
1 GCACTATGTGTGCGA-ATTCTTTAACCGA
* * * *
78013455 GGCACTGTGTGTGCGAGTTATTCAACCGA
1 -GCACTATGTGTGCGAATTCTTTAACCGA
78013484 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
78013499 GATCGGTCAG
Statistics
Matches: 98, Mismatches: 25, Indels: 15
0.71 0.18 0.11
Matches are distributed among these distances:
28 27 0.28
29 63 0.64
30 8 0.08
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.29
Consensus pattern (28 bp):
GCACTATGTGTGCGAATTCTTTAACCGA
Found at i:78017135 original size:37 final size:37
Alignment explanation
Indices: 78017086--78017214 Score: 132
Period size: 37 Copynumber: 3.4 Consensus size: 37
78017076 ATATGCTAGA
78017086 ATTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
1 ATTATAT-CGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * *
78017124 ATTATATCGGGTTAAATCCCGCAGGCCTAGTGCTAGT
1 ATTATATCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
* * * *
78017161 ATTATATCTAAGTTTAAAGTCCCGTAGGCTTCGTGTTGGT
1 ATTATATC--GGGTTAAA-TCCCGCAGGCTTCGTGCTGGT
* *
78017201 GTTATGTTCGGGTT
1 ATTAT-ATCGGGTT
78017215 TTATACCTGG
Statistics
Matches: 73, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 35 0.48
38 7 0.10
39 9 0.12
40 20 0.27
41 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.26, T:0.36
Consensus pattern (37 bp):
ATTATATCGGGTTAAATCCCGCAGGCTTCGTGCTGGT
Found at i:78020470 original size:58 final size:58
Alignment explanation
Indices: 78020398--78020516 Score: 229
Period size: 58 Copynumber: 2.1 Consensus size: 58
78020388 TATGAATAAT
*
78020398 AATCAAATTTATACAAATGTAAATTTGTTATTTATTTCTCAAGTTTCTATTATAAAAA
1 AATCAAATTCATACAAATGTAAATTTGTTATTTATTTCTCAAGTTTCTATTATAAAAA
78020456 AATCAAATTCATACAAATGTAAATTTGTTATTTATTTCTCAAGTTTCTATTATAAAAA
1 AATCAAATTCATACAAATGTAAATTTGTTATTTATTTCTCAAGTTTCTATTATAAAAA
78020514 AAT
1 AAT
78020517 TAACTATCAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (58 bp):
AATCAAATTCATACAAATGTAAATTTGTTATTTATTTCTCAAGTTTCTATTATAAAAA
Found at i:78022798 original size:15 final size:14
Alignment explanation
Indices: 78022778--78022807 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
78022768 AAATCTGGTG
78022778 GTGTTGTTGTGTAGA
1 GTGTTGTTG-GTAGA
78022793 GTGTTGTTGGTAGA
1 GTGTTGTTGGTAGA
78022807 G
1 G
78022808 CTTTTCCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.13, C:0.00, G:0.43, T:0.43
Consensus pattern (14 bp):
GTGTTGTTGGTAGA
Found at i:78032277 original size:3 final size:3
Alignment explanation
Indices: 78032269--78032302 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
78032259 GTATGTCCAT
*
78032269 TTC TTC TTC TTC TTC TTC TTC TTC AT- TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
78032303 TTTTGCTACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 1 0.04
3 27 0.96
ACGTcount: A:0.03, C:0.29, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:78033963 original size:18 final size:18
Alignment explanation
Indices: 78033933--78033974 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
78033923 TTATCCTGGT
78033933 TATA-ATAAATTAATATA
1 TATATATAAATTAATATA
* * *
78033950 TATATATAATTTAATTTT
1 TATATATAAATTAATATA
78033968 TATATAT
1 TATATAT
78033975 TTATTAACCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TATATATAAATTAATATA
Found at i:78035357 original size:17 final size:18
Alignment explanation
Indices: 78035335--78035381 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
78035325 AATTAAAAAA
*
78035335 ATATTTTTTAAA-ATTTT
1 ATATTTTTAAAATATTTT
78035352 ATATTTTTAAAATATTTT
1 ATATTTTTAAAATATTTT
78035370 AATGATTTTTAA
1 -AT-ATTTTTAA
78035382 TTTTAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 11 0.42
18 5 0.19
19 2 0.08
20 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (18 bp):
ATATTTTTAAAATATTTT
Found at i:78056261 original size:40 final size:40
Alignment explanation
Indices: 78056203--78056427 Score: 274
Period size: 40 Copynumber: 5.6 Consensus size: 40
78056193 AAACCAAGTA
* * * *
78056203 CCTTTGGGATTTAG-CCGGATATCGCAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
78056242 CCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* * *
78056282 CCTTCGGGTCTTAGCCCGGAAATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTCGCACAAATG
* *
78056322 CCTTCGGGGCTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATG
* *
78056365 CCTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
78056405 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
78056428 CATCCGAATA
Statistics
Matches: 159, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 12 0.08
40 111 0.70
42 1 0.01
43 35 0.22
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:78056381 original size:83 final size:80
Alignment explanation
Indices: 78056228--78056427 Score: 274
Period size: 83 Copynumber: 2.5 Consensus size: 80
78056218 CGGATATCGC
* * * * * *
78056228 AACTCGCAAAAATGCCTTCGGGACTTAACCCGGATATAGTAACTCGCACACATGCCTTCGGGTCT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACT
78056293 TAGCCCGGAAATAGT
66 TAGCCCGGAAATAGT
* * *
78056308 CACTAGCACAAATGCCTTCGGGGCTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGG
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG-AA--ACTCGCACAAATGCCTTCGGG
*
78056373 ACTTAGCCCGGATATAGT
63 ACTTAGCCCGGAAATAGT
*
78056391 AACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
78056428 CATCCGAATA
Statistics
Matches: 103, Mismatches: 14, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
80 33 0.32
81 1 0.01
83 69 0.67
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACT
TAGCCCGGAAATAGT
Found at i:78063101 original size:16 final size:16
Alignment explanation
Indices: 78063076--78063107 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
78063066 ATGTGATCCA
78063076 AAAATCATATTTTTGC
1 AAAATCATATTTTTGC
*
78063092 AAAATTATATTTTTGC
1 AAAATCATATTTTTGC
78063108 CCCAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (16 bp):
AAAATCATATTTTTGC
Found at i:78074545 original size:51 final size:51
Alignment explanation
Indices: 78074489--78074611 Score: 167
Period size: 50 Copynumber: 2.4 Consensus size: 51
78074479 ATGAGTCACT
**
78074489 TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGGGAGTTACA
1 TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGAAAGTTACA
* * * *
78074540 TAATGCATGCCATAATTT-ATGATGCAAACTTAACTTACATGAAAGTTACA
1 TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGAAAGTTACA
* *
78074590 TAATGCATGACTTTATTAAATG
1 TAATGCATGACTTAATTTAATG
78074612 CAGAACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 42 0.69
51 19 0.31
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (51 bp):
TAATGCATGACTTAATTTAATGATGAAAACTTAACTAACATGAAAGTTACA
Found at i:78076603 original size:27 final size:27
Alignment explanation
Indices: 78076546--78076615 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 27
78076536 TGAAGTATTC
78076546 AAAAAAAAAAGAAATACGAAATTTAAA
1 AAAAAAAAAAGAAATACGAAATTTAAA
*
78076573 AAAAAAGAAGAGAAATACGAAATTTATAA
1 AAAAAA-AAAAGAAATACGAAATTTA-AA
78076602 AAAATAAAAAAGAA
1 AAAA-AAAAAAGAA
78076616 GTGAAGTGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
27 6 0.16
28 18 0.47
29 12 0.32
30 2 0.05
ACGTcount: A:0.73, C:0.03, G:0.10, T:0.14
Consensus pattern (27 bp):
AAAAAAAAAAGAAATACGAAATTTAAA
Found at i:78080648 original size:18 final size:19
Alignment explanation
Indices: 78080625--78080671 Score: 71
Period size: 17 Copynumber: 2.5 Consensus size: 19
78080615 CCATTCAAGA
78080625 GAAAAAAGAAAAG-AAAAT
1 GAAAAAAGAAAAGAAAAAT
78080643 G-AAAAAGAAAAGAAAAAT
1 GAAAAAAGAAAAGAAAAAT
78080661 GAGAAAAAGAA
1 GA-AAAAAGAA
78080672 TGCAAAATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 11 0.42
18 7 0.27
20 8 0.31
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (19 bp):
GAAAAAAGAAAAGAAAAAT
Found at i:78080730 original size:21 final size:22
Alignment explanation
Indices: 78080683--78080734 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
78080673 GCAAAATACC
78080683 AAAAGAAAAAAAGAACAAGTGAG
1 AAAAGAAAAAAAGAACAAG-GAG
*
78080706 AAAAGAAAAAGAAGAGCAA-GA-
1 AAAAGAAAAA-AAGAACAAGGAG
78080727 AAAAGAAA
1 AAAAGAAA
78080735 TTAGAAGAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
22 2 0.07
23 10 0.37
24 7 0.26
ACGTcount: A:0.73, C:0.04, G:0.21, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAAAAGAACAAGGAG
Found at i:78087081 original size:46 final size:46
Alignment explanation
Indices: 78086935--78087198 Score: 184
Period size: 47 Copynumber: 5.6 Consensus size: 46
78086925 ATCGTTGGCT
* * * *
78086935 AGTGTAAGAGATGTCCGGGACATGCATCGGCCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGATCAAAGCC
* *
78086981 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGATCAAAGCC
* *
78087029 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGA-CATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATCA-AAGCC
* * * * *
78087075 AATGTAAGACATGTCTAGGACATGCATCAGCTACA---AGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGAGATCAAAGCC
* * * *
78087121 AGTGTAAGACCATGTCTGAGACATGGCATTGAC-TTGTGATCTAAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATTGAGATCAAAGCC
* *
78087168 AGTGTAAGACCATGTCTAGGACGTGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
78087199 GCACCTTACC
Statistics
Matches: 175, Mismatches: 28, Indels: 29
0.75 0.12 0.12
Matches are distributed among these distances:
45 8 0.05
46 66 0.38
47 75 0.43
48 25 0.14
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGATCAAAGCC
Found at i:78087171 original size:47 final size:46
Alignment explanation
Indices: 78086977--78087184 Score: 162
Period size: 46 Copynumber: 4.5 Consensus size: 46
78086967 ACATTATGAG
*
78086977 AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GACATTGAGA-TGAA
1 AGCCAGTGTAAGACCATGTCTGAGACAT-GCATCAGAC-TTGAGACT--A
* * * *
78087025 AGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTTGAGACATA
1 AGCCAGTGTAAGACCATGTCTGAGACATGCATCAGACTTGAGAC-TA
* **
78087071 AGCCAATGTAAGA-CATGTCT-AGGACATGCATCAG-CTACAAGA-TGA
1 AGCCAGTGTAAGACCATGTCTGA-GACATGCATCAGACT-TGAGACT-A
* * *
78087116 TAGTCAGTGTAAGACCATGTCTGAGACATGGCAT-TGACTTGTGATCTA
1 -AGCCAGTGTAAGACCATGTCTGAGACAT-GCATCAGACTTGAGA-CTA
78087164 AGCCAGTGTAAGACCATGTCT
1 AGCCAGTGTAAGACCATGTCT
78087185 AGGACGTGGC
Statistics
Matches: 132, Mismatches: 15, Indels: 27
0.76 0.09 0.16
Matches are distributed among these distances:
44 1 0.01
45 3 0.02
46 55 0.42
47 51 0.39
48 21 0.16
49 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACCATGTCTGAGACATGCATCAGACTTGAGACTA
Found at i:78090167 original size:46 final size:46
Alignment explanation
Indices: 78090114--78090285 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
78090104 TGAGCATCCA
78090114 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
78090160 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
* * *
78090207 AACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* *
78090253 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78090286 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.55
47 28 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:78090266 original size:93 final size:93
Alignment explanation
Indices: 78090107--78090278 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
78090097 CGATGGTTGA
* *
78090107 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78090172 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
78090200 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
78090265 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
78090279 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:78097811 original size:19 final size:20
Alignment explanation
Indices: 78097774--78097811 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
78097764 ATAAGGTGGT
78097774 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
78097794 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
78097812 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:78115714 original size:18 final size:18
Alignment explanation
Indices: 78115691--78115725 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
78115681 TACACCATAT
*
78115691 CAGTAACAGTAACGGTAA
1 CAGTAACAATAACGGTAA
78115709 CAGTAACAATAACGGTA
1 CAGTAACAATAACGGTA
78115726 CACTAAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.17, G:0.20, T:0.17
Consensus pattern (18 bp):
CAGTAACAATAACGGTAA
Found at i:78116377 original size:30 final size:30
Alignment explanation
Indices: 78116343--78116399 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
78116333 AAAATCATAT
*
78116343 TTTGTCAAAATTACAATTTTGCCCCTAAAC
1 TTTGTCAAAAATACAATTTTGCCCCTAAAC
* *
78116373 TTTGTCAAAAATACATTTTTTCCCCTA
1 TTTGTCAAAAATACAATTTTGCCCCTA
78116400 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.05, T:0.40
Consensus pattern (30 bp):
TTTGTCAAAAATACAATTTTGCCCCTAAAC
Found at i:78118404 original size:21 final size:19
Alignment explanation
Indices: 78118370--78118431 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
78118360 TAAGTTATGT
78118370 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
78118392 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
78118414 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
78118432 GTATTTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:78118492 original size:22 final size:22
Alignment explanation
Indices: 78118456--78118505 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
78118446 AAAATATGGT
* *
78118456 AAAATAATTAGTATA-AAAAAA
1 AAAATAAATAATATATAAAAAA
*
78118477 CAAAATAAATAATATATAAGAAA
1 -AAAATAAATAATATATAAAAAA
78118500 AAAATA
1 AAAATA
78118506 TATGAGAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (22 bp):
AAAATAAATAATATATAAAAAA
Found at i:78118563 original size:18 final size:18
Alignment explanation
Indices: 78118540--78118580 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
78118530 GAATATTGAA
78118540 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
78118558 TAATAAAAATATAGTATG
1 TAATAAAAATATAGTATG
*
78118576 AAATA
1 TAATA
78118581 TAATATGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (18 bp):
TAATAAAAATATAGTATG
Found at i:78118925 original size:20 final size:21
Alignment explanation
Indices: 78118891--78118930 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
78118881 ATTTTCCATT
*
78118891 TACAAATTTAGTAAATAATAA
1 TACAAATTTAGTAAAAAATAA
*
78118912 TACAATTTTA-TAAAAAATA
1 TACAAATTTAGTAAAAAATA
78118931 TATAAAGAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.57, C:0.05, G:0.03, T:0.35
Consensus pattern (21 bp):
TACAAATTTAGTAAAAAATAA
Found at i:78122447 original size:17 final size:17
Alignment explanation
Indices: 78122425--78122467 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
78122415 AATCTGGGCT
* *
78122425 TGTGGGCCACACAGACG
1 TGTGGGCCACACAAACA
*
78122442 TGTGGGCCATACAAACA
1 TGTGGGCCACACAAACA
78122459 TGTGGGCCA
1 TGTGGGCCA
78122468 ACATGGGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.33, T:0.16
Consensus pattern (17 bp):
TGTGGGCCACACAAACA
Found at i:78127754 original size:27 final size:27
Alignment explanation
Indices: 78127724--78127899 Score: 201
Period size: 27 Copynumber: 6.5 Consensus size: 27
78127714 ATATTGAGTC
* * * *
78127724 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78127751 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78127778 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78127806 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78127833 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78127860 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78127887 CGCACACTTAGTG
1 CGCACACTTAGTG
78127900 TTGTACAATT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 105 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78127863 original size:82 final size:81
Alignment explanation
Indices: 78127745--78127899 Score: 231
Period size: 82 Copynumber: 1.9 Consensus size: 81
78127735 TGCTATATAA
* *
78127745 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78127810 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78127827 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78127891 CACTTAGTG
65 CACTTAGTG
78127900 TTGTACAATT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.23
82 51 0.77
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78149728 original size:27 final size:27
Alignment explanation
Indices: 78149698--78149875 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
78149688 ATATTGAGTC
* * * *
78149698 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
78149725 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78149752 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
78149780 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
78149807 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
78149834 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
78149861 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
78149876 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:78149837 original size:82 final size:81
Alignment explanation
Indices: 78149719--78149874 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
78149709 TGCTATATAA
* *
78149719 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
78149784 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
78149801 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
78149865 CACTTAGTGC
65 CACTTAGTGC
78149875 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:78155264 original size:110 final size:110
Alignment explanation
Indices: 78155066--78155285 Score: 404
Period size: 110 Copynumber: 2.0 Consensus size: 110
78155056 ATCAAACATG
*
78155066 CTTGCATTGAAGCAAATAAATCATTATCCTATCACATACAACTTCATCATCAAAGTTAGTCAAGC
1 CTTGCATTCAAGCAAATAAATCATTATCCTATCACATACAACTTCATCATCAAAGTTAGTCAAGC
*
78155131 AATTACACATAATATCATCACATAGATGAGCTCATCATATCATAA
66 AATTACACATAATATCATAACATAGATGAGCTCATCATATCATAA
*
78155176 CTTGCATTCAAGCAAATAAATCATTATCCTATCACCTACAACTTCATCATCAAAGTTAGTCAAGC
1 CTTGCATTCAAGCAAATAAATCATTATCCTATCACATACAACTTCATCATCAAAGTTAGTCAAGC
*
78155241 AATTACACATAATATCATAACATAGATTAGCTCATCATATCATAA
66 AATTACACATAATATCATAACATAGATGAGCTCATCATATCATAA
78155286 TTTATACTTG
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
110 106 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (110 bp):
CTTGCATTCAAGCAAATAAATCATTATCCTATCACATACAACTTCATCATCAAAGTTAGTCAAGC
AATTACACATAATATCATAACATAGATGAGCTCATCATATCATAA
Found at i:78155563 original size:57 final size:58
Alignment explanation
Indices: 78155475--78155584 Score: 188
Period size: 57 Copynumber: 1.9 Consensus size: 58
78155465 CATATACTTT
78155475 GATGCTCACACAGAGCTACGGTAGTCCACAACTTATGC-GAATTACTACCAATACATC
1 GATGCTCACACAGAGCTACGGTAGTCCACAACTTATGCGGAATTACTACCAATACATC
*
78155532 GATGCTCACACAGAGCTACGGTAG-CTCACAACTTATGCGGAATTGCTACCAAT
1 GATGCTCACACAGAGCTACGGTAGTC-CACAACTTATGCGGAATTACTACCAAT
78155585 CACTATATTT
Statistics
Matches: 50, Mismatches: 1, Indels: 3
0.93 0.02 0.06
Matches are distributed among these distances:
56 1 0.02
57 36 0.72
58 13 0.26
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (58 bp):
GATGCTCACACAGAGCTACGGTAGTCCACAACTTATGCGGAATTACTACCAATACATC
Found at i:78156612 original size:24 final size:23
Alignment explanation
Indices: 78156580--78156650 Score: 83
Period size: 24 Copynumber: 3.0 Consensus size: 23
78156570 CATTTATTTT
78156580 ACATATATATATAATAATAATATA
1 ACATATATA-ATAATAATAATATA
*
78156604 ACATATATAAT-GTAATAATATA
1 ACATATATAATAATAATAATATA
*
78156626 ATA-ATATAATAATATAATAATATA
1 ACATATATAAT-A-ATAATAATATA
78156650 A
1 A
78156651 ATTAATATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 7 0.17
22 12 0.29
23 2 0.05
24 20 0.49
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (23 bp):
ACATATATAATAATAATAATATA
Found at i:78156662 original size:8 final size:8
Alignment explanation
Indices: 78156593--78156650 Score: 84
Period size: 8 Copynumber: 7.5 Consensus size: 8
78156583 TATATATATA
78156593 ATAATAAT
1 ATAATAAT
*
78156601 ATAA-CAT
1 ATAATAAT
78156608 AT-ATAAT
1 ATAATAAT
*
78156615 GTAATAAT
1 ATAATAAT
78156623 ATAATAAT
1 ATAATAAT
78156631 ATAATAAT
1 ATAATAAT
78156639 ATAATAAT
1 ATAATAAT
78156647 ATAA
1 ATAA
78156651 ATTAATATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
6 1 0.02
7 7 0.16
8 36 0.82
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (8 bp):
ATAATAAT
Done.