Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 244 of 295
Found at i:78509441 original size:19 final size:20
Alignment explanation
Indices: 78509408--78509452 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
78509398 TGATTCAACG
78509408 GACAT-AAAACTCTTGACAT
1 GACATGAAAACTCTTGACAT
*
78509427 GACATGAAAAC-CTTGAGAT
1 GACATGAAAACTCTTGACAT
*
78509446 GAAATGA
1 GACATGA
78509453 TAATGACTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.44, C:0.16, G:0.18, T:0.22
Consensus pattern (20 bp):
GACATGAAAACTCTTGACAT
Found at i:78515134 original size:13 final size:13
Alignment explanation
Indices: 78515116--78515145 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
78515106 ATAAAAATTA
78515116 TAAAAACTAAAAT
1 TAAAAACTAAAAT
*
78515129 TAAAAACTAATAT
1 TAAAAACTAAAAT
78515142 TAAA
1 TAAA
78515146 GGAAAATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (13 bp):
TAAAAACTAAAAT
Found at i:78515183 original size:6 final size:6
Alignment explanation
Indices: 78515172--78515216 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
78515162 GTACTTAATT
* * *
78515172 AATAAA AATAAA GATAAA AGTGAA AATAAA AATAAAA AATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AAT-AAA AATAAA AA
78515217 GTTTTTAAAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
6 26 0.81
7 6 0.19
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:78517228 original size:27 final size:27
Alignment explanation
Indices: 78517187--78517240 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
78517177 TGTCATGTGA
* *
78517187 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
78517214 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
78517241 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:78517566 original size:49 final size:49
Alignment explanation
Indices: 78517494--78517670 Score: 237
Period size: 49 Copynumber: 3.6 Consensus size: 49
78517484 TGAGGTCACG
* *
78517494 TGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
** * * *
78517543 TGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTTCGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT-GGTCGCA
* *
78517594 TGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAATTGGTCGCT
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
* *
78517643 TGTGCAGTACTAAGTGCAGGATACTATG
1 TGTGTAGTACTAAGTGCAGGCTACTATG
78517671 CATACCAGAT
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 64 0.59
50 4 0.04
51 41 0.38
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
Found at i:78517668 original size:100 final size:100
Alignment explanation
Indices: 78517489--78517683 Score: 309
Period size: 100 Copynumber: 1.9 Consensus size: 100
78517479 TATTGTGAGG
* * *
78517489 TCACGTGTGTAGTACTAAGTGCATGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACT
* * *
78517554 AAGTGCAGGCTACTATACGTACCCGATAACTTCGA
66 AAGTGCAGGATACTATACATACCAGATAACTTCGA
* *
78517589 TCACATGTGTAGTACTAAGTGCAAGCTACTATGTGTACCGGATAATTGGTCGCTTGTGCAGTACT
1 TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACT
*
78517654 AAGTGCAGGATACTATGCATACCAGATAAC
66 AAGTGCAGGATACTATACATACCAGATAAC
78517684 CTTGTCTACA
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 86 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCATGTGCAGTACT
AAGTGCAGGATACTATACATACCAGATAACTTCGA
Found at i:78533867 original size:19 final size:19
Alignment explanation
Indices: 78533835--78533872 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
78533825 ATTTCGTACG
78533835 TTGGCCCAGTTTCTCCGTTT
1 TTGGCCCAGTTTCT-CGTTT
78533855 TTGGCCC-GTTTCTCGTTT
1 TTGGCCCAGTTTCTCGTTT
78533873 CTTTCGCTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 6 0.33
20 7 0.39
ACGTcount: A:0.03, C:0.29, G:0.21, T:0.47
Consensus pattern (19 bp):
TTGGCCCAGTTTCTCGTTT
Found at i:78545160 original size:19 final size:20
Alignment explanation
Indices: 78545126--78545170 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
78545116 TGATTCAACG
78545126 GACAT-AAAACTCTTGACAT
1 GACATGAAAACTCTTGACAT
*
78545145 GACATGAAAACT-TTGAGAT
1 GACATGAAAACTCTTGACAT
*
78545164 GAAATGA
1 GACATGA
78545171 TAATGAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.24
Consensus pattern (20 bp):
GACATGAAAACTCTTGACAT
Found at i:78547218 original size:40 final size:40
Alignment explanation
Indices: 78547125--78547412 Score: 312
Period size: 40 Copynumber: 7.5 Consensus size: 40
78547115 AAACCAAGTA
* * *
78547125 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
78547163 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78547203 CCTTCCGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
** * * *
78547243 CCCCCGGGACTTAGCCCGGATGTAATAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78547283 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
78547323 CCCTCGGGACTTAGCCCGAATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78547363 ----C----CTT-GCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78547394 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78547413 TTATCATCCG
Statistics
Matches: 211, Mismatches: 27, Indels: 22
0.81 0.10 0.08
Matches are distributed among these distances:
31 26 0.12
32 3 0.01
35 1 0.00
36 1 0.00
38 12 0.06
39 20 0.09
40 148 0.70
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78547377 original size:31 final size:31
Alignment explanation
Indices: 78547336--78547397 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
78547326 TCGGGACTTA
78547336 GCCCGAATGTAATAACTCGCACAAATGCCTT
1 GCCCGAATGTAATAACTCGCACAAATGCCTT
*
78547367 GCCCGGATGTAATAACTCGCACAAATGCCTT
1 GCCCGAATGTAATAACTCGCACAAATGCCTT
78547398 CGGGACTTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (31 bp):
GCCCGAATGTAATAACTCGCACAAATGCCTT
Found at i:78554837 original size:40 final size:40
Alignment explanation
Indices: 78554749--78555036 Score: 312
Period size: 40 Copynumber: 7.5 Consensus size: 40
78554739 AAGCCAAGTA
* * *
78554749 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
78554787 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
78554827 CCTTCCGGACATAGCCCGGATATAGTAGCTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** *
78554867 CCCTCGGGACTTAGCCCGGACGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
78554907 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
78554947 CCCTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
78554987 ----C----CTT-GCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
78555018 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78555037 TTATCATCCG
Statistics
Matches: 213, Mismatches: 25, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
31 27 0.13
32 3 0.01
35 1 0.00
36 1 0.00
38 12 0.06
39 20 0.09
40 149 0.70
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:78554998 original size:31 final size:31
Alignment explanation
Indices: 78554960--78555021 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
78554950 TCGGGACTTA
78554960 GCCCGGATGTAATAACTCGCACAAATGCCTT
1 GCCCGGATGTAATAACTCGCACAAATGCCTT
78554991 GCCCGGATGTAATAACTCGCACAAATGCCTT
1 GCCCGGATGTAATAACTCGCACAAATGCCTT
78555022 CGGGACTTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (31 bp):
GCCCGGATGTAATAACTCGCACAAATGCCTT
Found at i:78557465 original size:12 final size:12
Alignment explanation
Indices: 78557450--78557475 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
78557440 TCCACATCTC
78557450 TTTTCTTTTTTT
1 TTTTCTTTTTTT
78557462 TTTTCTTTTTTT
1 TTTTCTTTTTTT
78557474 TT
1 TT
78557476 CTTTCGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTTCTTTTTTT
Found at i:78557701 original size:15 final size:15
Alignment explanation
Indices: 78557683--78557723 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
78557673 TTTAGTAGTT
*
78557683 TTATTATTGTTAGAA
1 TTATTATTATTAGAA
*
78557698 TTATTATTATTAGAT
1 TTATTATTATTAGAA
78557713 TTAGTTATTAT
1 TTA-TTATTAT
78557724 ATTATTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.70
16 7 0.30
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (15 bp):
TTATTATTATTAGAA
Found at i:78557704 original size:33 final size:33
Alignment explanation
Indices: 78557648--78557710 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
78557638 CCCCTCCTTT
* * *
78557648 TTTTATTTTTATTATAATAATTATTTTTAGTAG
1 TTTTATTATTATTAGAATAATTATTATTAGTAG
* *
78557681 TTTTATTATTGTTAGAATTATTATTATTAG
1 TTTTATTATTATTAGAATAATTATTATTAG
78557711 ATTTAGTTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (33 bp):
TTTTATTATTATTAGAATAATTATTATTAGTAG
Found at i:78562150 original size:3 final size:3
Alignment explanation
Indices: 78562142--78562191 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
78562132 AAGTAAATCT
* *
78562142 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA AAA GAA GAA GAA GAA AAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
78562190 GA
1 GA
78562192 CATTAGTACT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:78567456 original size:50 final size:50
Alignment explanation
Indices: 78567352--78567457 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
78567342 ATAAAAGAGT
* * *
78567352 TATTAATTAAAAAGATGAATTAAAAATAAAAAAATTGAAAACAATATATT
1 TATTAATTAAAAACATGAATTAAAAATAAAAAAATTGAAAACAATAAATA
* * *
78567402 TATTAATTATAAACATTAATTAAATATAAAAAAATATGAAATA-AA-AAATA
1 TATTAATTAAAAACATGAATTAAAAATAAAAAAAT-TGAAA-ACAATAAATA
78567452 TATTAA
1 TATTAA
78567458 AATACTTATA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
50 40 0.83
51 7 0.15
52 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (50 bp):
TATTAATTAAAAACATGAATTAAAAATAAAAAAATTGAAAACAATAAATA
Found at i:78567460 original size:17 final size:16
Alignment explanation
Indices: 78567420--78567461 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
78567410 ATAAACATTA
78567420 ATTAAATATAAAAAAAT
1 ATTAAA-ATAAAAAAAT
*
78567437 A-TGAAATAAAAAATAT
1 ATTAAAATAAAAAA-AT
78567453 ATTAAAATA
1 ATTAAAATA
78567462 CTTATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
15 8 0.38
16 6 0.29
17 7 0.33
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (16 bp):
ATTAAAATAAAAAAAT
Found at i:78572394 original size:24 final size:24
Alignment explanation
Indices: 78572359--78572406 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
78572349 AGTTTAACAC
78572359 TTCATCCAATTCTCTATACTAGCA
1 TTCATCCAATTCTCTATACTAGCA
*
78572383 TTCATCCGATTCTCTATACTAGCA
1 TTCATCCAATTCTCTATACTAGCA
78572407 CCAGTCCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.29, G:0.06, T:0.38
Consensus pattern (24 bp):
TTCATCCAATTCTCTATACTAGCA
Found at i:78573322 original size:31 final size:31
Alignment explanation
Indices: 78573284--78573345 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
78573274 GATCACAATG
78573284 CCAATGTATCTATTTATACACACAATCATTC
1 CCAATGTATCTATTTATACACACAATCATTC
78573315 CCAATGTATCTATTTATACACACAATCATTC
1 CCAATGTATCTATTTATACACACAATCATTC
78573346 ATTATTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.26, G:0.03, T:0.35
Consensus pattern (31 bp):
CCAATGTATCTATTTATACACACAATCATTC
Found at i:78575985 original size:20 final size:18
Alignment explanation
Indices: 78575935--78575986 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
78575925 CTACAAGATA
78575935 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
78575952 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
78575972 AATATTAAATTAATA
1 AATATTAAATTAATA
78575987 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:78576081 original size:14 final size:14
Alignment explanation
Indices: 78576064--78576091 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
78576054 TCAACCACTG
78576064 ATGACCAACCGCTA
1 ATGACCAACCGCTA
78576078 ATGACCAACCGCTA
1 ATGACCAACCGCTA
78576092 CCAGCCATCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.36, G:0.14, T:0.14
Consensus pattern (14 bp):
ATGACCAACCGCTA
Found at i:78593267 original size:22 final size:22
Alignment explanation
Indices: 78593242--78593283 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
78593232 AAAAATTAAT
78593242 TCCAAAAT-AAAATCAATAATAC
1 TCCAAAATAAAAAT-AATAATAC
*
78593264 TCCAAATTAAAAATAATAAT
1 TCCAAAATAAAAATAATAAT
78593284 TTCAATGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (22 bp):
TCCAAAATAAAAATAATAATAC
Found at i:78594577 original size:17 final size:17
Alignment explanation
Indices: 78594555--78594587 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
78594545 AATTAAGTTA
*
78594555 TTTTTAAAGTATTTTAT
1 TTTTTAAAATATTTTAT
78594572 TTTTTAAAATATTTTA
1 TTTTTAAAATATTTTA
78594588 AAATATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTAAAATATTTTAT
Found at i:78597573 original size:10 final size:10
Alignment explanation
Indices: 78597558--78597607 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
78597548 TAATTTTAGG
78597558 ATTTAT-TTT
1 ATTTATCTTT
78597567 CATTTATCTTT
1 -ATTTATCTTT
*
78597578 AATTATCTTT
1 ATTTATCTTT
78597588 ATTTAT-TTGT
1 ATTTATCTT-T
78597598 ATTTATCTTT
1 ATTTATCTTT
78597608 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:78601340 original size:21 final size:23
Alignment explanation
Indices: 78601304--78601369 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 23
78601294 GCAACCCAAT
*
78601304 TTTTATTTCTCTTTATTTTTTTA
1 TTTTATTTCTCTTTATTATTTTA
78601327 TTTT-TTTC-CTTTATTATTTTA
1 TTTTATTTCTCTTTATTATTTTA
* *
78601348 TTTTA-AT-TATTTATTATTTTA
1 TTTTATTTCTCTTTATTATTTTA
78601369 T
1 T
78601370 CTTAATGATT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
21 30 0.79
22 4 0.11
23 4 0.11
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (23 bp):
TTTTATTTCTCTTTATTATTTTA
Found at i:78601374 original size:21 final size:21
Alignment explanation
Indices: 78601336--78601384 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
78601326 ATTTTTTTCC
* *
78601336 TTTATTATTTTATTTTAATTA
1 TTTATTATTTTATCTTAATGA
78601357 TTTATTATTTTATCTTAATGA
1 TTTATTATTTTATCTTAATGA
78601378 TTTATTA
1 TTTATTA
78601385 CTTAATTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTATTATTTTATCTTAATGA
Found at i:78603124 original size:10 final size:10
Alignment explanation
Indices: 78603109--78603158 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
78603099 TAATTTTCGG
78603109 ATTTAT-TTT
1 ATTTATCTTT
78603118 CATTTATCTTT
1 -ATTTATCTTT
*
78603129 AATTATCTTT
1 ATTTATCTTT
78603139 ATTTAT-TTGT
1 ATTTATCTT-T
78603149 ATTTATCTTT
1 ATTTATCTTT
78603159 TAGAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:78603908 original size:17 final size:18
Alignment explanation
Indices: 78603877--78603910 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
78603867 TATTCTCTAT
*
78603877 TTTAATTTTCTCAATTTA
1 TTTAATTTTCACAATTTA
78603895 TTTAA-TTTCACAATTT
1 TTTAATTTTCACAATTT
78603911 CAATACGACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTAATTTTCACAATTTA
Found at i:78606701 original size:20 final size:20
Alignment explanation
Indices: 78606676--78606715 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
78606666 TGACATAAGA
78606676 ACATTATTTAATCAATTTGG
1 ACATTATTTAATCAATTTGG
78606696 ACATTATTTAATCAATTTGG
1 ACATTATTTAATCAATTTGG
78606716 TACCCATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45
Consensus pattern (20 bp):
ACATTATTTAATCAATTTGG
Found at i:78606724 original size:20 final size:20
Alignment explanation
Indices: 78606681--78606724 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
78606671 TAAGAACATT
**
78606681 ATTTAATCAATTTGGACATT
1 ATTTAATCAATTTGGACACC
78606701 ATTTAATCAATTTGGTAC-CC
1 ATTTAATCAATTTGG-ACACC
78606721 ATTT
1 ATTT
78606725 TGGGTGTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (20 bp):
ATTTAATCAATTTGGACACC
Found at i:78617942 original size:17 final size:17
Alignment explanation
Indices: 78617920--78617966 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
78617910 CAGAGAGCAG
* *
78617920 GGGAAAGAAAGAAGGAA
1 GGGAAAAAAAGAAAGAA
78617937 GGGAAAAAAAGAAAGAA
1 GGGAAAAAAAGAAAGAA
*
78617954 -GGAAAAAAGGAAA
1 GGGAAAAAAAGAAA
78617967 AATTTGGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (17 bp):
GGGAAAAAAAGAAAGAA
Found at i:78620115 original size:25 final size:25
Alignment explanation
Indices: 78620087--78620137 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
78620077 CATGGCAACC
78620087 TGATATGAAATGTGTAAGACCATGG
1 TGATATGAAATGTGTAAGACCATGG
78620112 TGATATGAAATGTGTAAGACCATGG
1 TGATATGAAATGTGTAAGACCATGG
78620137 T
1 T
78620138 TGAAAGATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.08, G:0.27, T:0.29
Consensus pattern (25 bp):
TGATATGAAATGTGTAAGACCATGG
Found at i:78620157 original size:71 final size:71
Alignment explanation
Indices: 78620041--78620183 Score: 277
Period size: 71 Copynumber: 2.0 Consensus size: 71
78620031 GTGTGCTCTC
*
78620041 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
78620106 CCATGG
66 CCATGG
78620112 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
78620177 CCATGG
66 CCATGG
78620183 T
1 T
78620184 TGAAAGATAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 71 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (71 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGA
CCATGG
Found at i:78620164 original size:46 final size:46
Alignment explanation
Indices: 78620112--78620424 Score: 390
Period size: 46 Copynumber: 7.0 Consensus size: 46
78620102 AAGACCATGG
**
78620112 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* **
78620158 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* ** *
78620204 TAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
*
78620250 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* * * *
78620296 TGACATGAAAAGAATAAGACCATGATTAAAAGATACCATGGCAACC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* * **
78620342 --AT-T----T-CATAAGACCATGGTTGAAAGATACCGTGGCAATG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
* *
78620380 TGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
78620425 ATGACAGAAA
Statistics
Matches: 236, Mismatches: 23, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
38 28 0.12
40 1 0.00
41 1 0.00
43 1 0.00
44 1 0.00
46 204 0.86
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACC
Found at i:78620412 original size:84 final size:84
Alignment explanation
Indices: 78620263--78620424 Score: 288
Period size: 84 Copynumber: 1.9 Consensus size: 84
78620253 TATGAAATGA
78620263 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
78620328 ATACCATGGCAACCATTTC
66 ATACCATGGCAACCATTTC
* * * *
78620347 ATAAGACCATGGTTGAAAGATACCGTGGCAATGTGACATGAAAAGAATAAGACCATGGTTGAAAG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
78620412 ATACCATGGCAAC
66 ATACCATGGCAAC
78620425 ATGACAGAAA
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 74 1.00
ACGTcount: A:0.42, C:0.17, G:0.22, T:0.20
Consensus pattern (84 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAG
ATACCATGGCAACCATTTC
Found at i:78620420 original size:130 final size:134
Alignment explanation
Indices: 78620126--78620440 Score: 415
Period size: 130 Copynumber: 2.4 Consensus size: 134
78620116 ATGAAATGTG
* * * * ** * *
78620126 TAAGACCATGGTTGAAAGATACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGATTAAAAGA
** *
78620191 TACCATGGCAACCTAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
66 TACCATGGCAACC-AATAT---ATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACAT
*
78620256 GAAATGAA
127 GAAAAGAA
*
78620264 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGATTAAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGATTAAAAGA
* *
78620329 TACCATGGCAACC-AT-T-T-CATAAGACCATGGTTGAAAGATACCGTGGCAATGTGACATGAAA
66 TACCATGGCAACCAATATATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
78620390 AGAA
131 AGAA
78620394 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAT
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAA-GAAT
78620441 GAGTAAGACC
Statistics
Matches: 161, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
129 5 0.03
130 82 0.51
131 1 0.01
135 1 0.01
136 2 0.01
138 70 0.43
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (134 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAAAGAATAAGACCATGATTAAAAGA
TACCATGGCAACCAATATATGCATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAA
AGAA
Found at i:78620430 original size:46 final size:48
Alignment explanation
Indices: 78620347--78620477 Score: 151
Period size: 46 Copynumber: 2.7 Consensus size: 48
78620337 CAACCATTTC
* **
78620347 ATAAGACCATGGTTGAAAGATACCGTGGCAATGTGACATGAAAA-G-A-
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAAG
78620393 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAATG
1 ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAA-G
* * * *
78620442 AGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 A-TAAGACCATGGTTGAAAGATACCATGGCAACATG
78620478 TCAAAGATAA
Statistics
Matches: 73, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
45 5 0.07
46 36 0.49
47 1 0.01
49 1 0.01
50 30 0.41
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (48 bp):
ATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAAG
Found at i:78623466 original size:46 final size:45
Alignment explanation
Indices: 78623413--78623588 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
78623403 TATTTGGGCA
78623413 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
78623459 TCCGAACTCATTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
78623506 TCCGAGCTCGTTAAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
78623552 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
78623589 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 63 0.60
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:78623568 original size:93 final size:93
Alignment explanation
Indices: 78623409--78623580 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
78623399 AGGATATTTG
* *
78623409 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAG
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
*
78623474 TTGAGTCTGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * *
78623502 GGCATCCGAGCTCGTTAAGTTGAGTCTGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGA
78623566 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
78623581 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:78625434 original size:177 final size:177
Alignment explanation
Indices: 78625121--78626254 Score: 1229
Period size: 177 Copynumber: 6.5 Consensus size: 177
78625111 AATTCACAGG
* * * * *
78625121 TCTTGTCTCCCTAAGCAA-TAGTGGAACAGATCAAAGACGACAAATCTTATCTCCATGTATCGGC
1 TCTTATCTCCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGC
* * * * * * * * * * * * *
78625185 AATATAGCAGATTTAAGTCACCAGCCTTATCTCCCTGAAGTTGTAGTGGAA-TAGGCT--CAATA
65 AATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCA-AGAAAGCAGGTTGGCGAT-
** * * * *
78625247 TACAAGTCTTATCTCCCTGAGGTTG-TAGTGGAGCAGACTGAAAATT-ATAGA
128 T-GTAGTCTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAAAATTGA-AGA
* *
78625298 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCAGCA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * * * * *
78625363 ATGGAGAAGATTTAAGCCACCAGCCTTATCTTTTTGAGGTAGCAAGAGAGCAGGTTGGCAATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCGATTGT
* *
78625428 AGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAAATTGAATA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* *
78625475 TCTTATCTCCCTAAGCAA-TAGTGGAGTAGATCGAAGATGGCAAATCTTATCTCCATGTATCGAC
1 TCTTATCTCCCTAAG-AAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGC
* *
78625539 AATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAAAAAGTAGGTTGGCGATTG
65 AATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCGATTG
* * *
78625604 TAGTCTTATCTTCCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAAGA
130 TAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* * * * ** * *
78625652 TCTTATCTCCCTAGGCAGTTGTAGAGCAGATC----ATGGTGAATCTTATCTTCATGTATTGGCA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * * * *
78625713 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAAGTAGCAAGAAAACAGGCTGGCAATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCGATTGT
* *
78625778 AGTCTTATCTTCCTGAGGCAGCAAGGAAGCAGACT-AAAGGTTGAAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAA-ATTGAAGA
* * *
78625825 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* *
78625890 ATAGAGCATATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGGCGATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCGATTGT
* *
78625955 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGATTGAAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* * * * * * *
78626002 TCTTATCTCCCTAGGTAGTTGTGGAGCAGATC----ATGGCGAATCTTATCTCTATGTATTGGTA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * * *
78626063 ATGGAGCAGATTTTAGCCACTAGTTTTATCTCTCTGAGATAGCAAGAGAGCAGGTTGGCGATTAT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCGATTGT
* * * * ** *
78626128 AATTTTGTATTCCTGAGGTAGCAAGGAAGCAGACCAAAAATTGCAGA
131 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
* * * * * * * *
78626175 TATTTTCTCCCTAAGTAGTAGTGAAGCAGAACGAAGATAGTAAATCTTATCTCCATGTATCGGTA
1 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
78626240 ATAGAGCAGATTTAA
66 ATAGAGCAGATTTAA
78626255 AGATGCAGTG
Statistics
Matches: 811, Mismatches: 128, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
172 2 0.00
173 295 0.36
176 5 0.01
177 497 0.61
178 8 0.01
179 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (177 bp):
TCTTATCTCCCTAAGAAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCATGTATCGGCA
ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGCAGGTTGGCGATTGT
AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGA
Found at i:78625647 original size:44 final size:45
Alignment explanation
Indices: 78625560--78625659 Score: 123
Period size: 44 Copynumber: 2.2 Consensus size: 45
78625550 TTTAAGCCAC
** **
78625560 TAGTCTTATC-TCTCTGAGGTAGCAAAAAAGTAGGTTGGCGATTG
1 TAGTCTTATCTTCTCTGAGGTAGCAAAAAAGTAGACTGAAGATTG
*
78625604 TAGTCTTATCTTC-CTGAGGTAGCAAGAAAGTAGACTGAAGATTG
1 TAGTCTTATCTTCTCTGAGGTAGCAAAAAAGTAGACTGAAGATTG
*
78625648 AAGATCTTATCT
1 TAG-TCTTATCT
78625660 CCCTAGGCAG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 38 0.79
45 10 0.21
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.32
Consensus pattern (45 bp):
TAGTCTTATCTTCTCTGAGGTAGCAAAAAAGTAGACTGAAGATTG
Found at i:78625864 original size:350 final size:348
Alignment explanation
Indices: 78625121--78626254 Score: 1389
Period size: 350 Copynumber: 3.2 Consensus size: 348
78625111 AATTCACAGG
* * * *
78625121 TCTTGTCTCCCTAAGCAATAGTGGAACAGATCAAAGACGACAAATCTTATCTCCATGTATCGGCA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * * * * * * * * * * *
78625186 ATATAGCAGATTTAAGTCACCAGCCTTATCTCCCTGAAGTTGTAGTGGAA-TAGGCT--CAATAT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCA-AGAAAGTAGGTTGGCGAT-T
** * * * * * *
78625248 ACAAGTCTTATCTCCCTGAGGTTGTAGTGGAGCAGACTGAAAATT-ATAGATCTTATCTCCCTAA
129 -GTAGTCTTATCTTCCTGAGGTAGAAG-GAAGCAGACTGAAGATTGA-AGATCTTATCTCCCTAG
* * ** * *
78625312 GAAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCAGCAATGGAGAAGATTTA
191 GAAGTTGTGGAGCAGATC----ATGGCGAATCTTATCTTCATGTATTGGCAATGGAGCAGATTTT
* * * *
78625377 AGCCACCAGCCTTATCTTTTTGAGGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCT
252 AGCCACTAGCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCT
* *
78625442 AAGGTAGCAAGGAAGCAGACTGAAAATTGAATA
317 GAGGTAGCAAGGAAGCAGACT-AAAATTGAAGA
* * *
78625475 TCTTATCTCCCTAAGCAATAGTGGAGTAGATCGAAGATGGCAAATCTTATCTCCATGTATCGACA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCA
*
78625540 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAAAAAGTAGGTTGGCGATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGTAGGTTGGCGATTGT
* * *
78625605 AGTCTTATCTTCCTGAGGTAGCAAGAAAGTAGACTGAAGATTGAAGATCTTATCTCCCTAGGCAG
131 AGTCTTATCTTCCTGAGGTAG-AAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGAAG
* *
78625670 TTGTAGAGCAGATCATGGTGAATCTTATCTTCATGTATTGGCAATGGAGCAGATTTTAGCCACTA
195 TTGTGGAGCAGATCATGGCGAATCTTATCTTCATGTATTGGCAATGGAGCAGATTTTAGCCACTA
* * * *
78625735 GCCTTATCTCTCTGAAGTAGCAAGAAAACAGGCTGGCAATTGTAGTCTTATCTTCCTGAGGCAGC
260 GCCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCTGAGGTAGC
*
78625800 AAGGAAGCAGACTAAAGGTTGAAGA
325 AAGGAAGCAGACTAAA-ATTGAAGA
* *
78625825 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATTGGCA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCA
* * *
78625890 ATAGAGCATATTTAAGCCACTAGTCTTATCTCTCTAAGGTAGCAAGAAAGCAGGTTGGCGATTGT
66 ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGTAGGTTGGCGATTGT
*
78625955 AGTCTTATCTTCCTGAGGTAGTAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGTAG
131 AGTCTTATCTTCCTGAGGTAG-AAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGAAG
*
78626020 TTGTGGAGCAGATCATGGCGAATCTTATC-TCTATGTATTGGTAATGGAGCAGATTTTAGCCACT
195 TTGTGGAGCAGATCATGGCGAATCTTATCTTC-ATGTATTGGCAATGGAGCAGATTTTAGCCACT
** * * * * * *
78626084 AGTTTTATCTCTCTG-AGATAGCAAGAGAGCAGGTTGGCGATTATAATTTTGTATTCCTGAGGTA
259 AGCCTTATCTCTCTGAAG-TAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCTGAGGTA
* *
78626148 GCAAGGAAGCAGACCAAAAATTGCAGA
323 GCAAGGAAGCAGA-CTAAAATTGAAGA
* * * * * * * * * *
78626175 TATTTTCTCCCTAAGTAGTAGTGAAGCAGAACGAAGATAGTAAATCTTATCTCCATGTATCGGTA
1 TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCA
78626240 ATAGAGCAGATTTAA
66 ATAGAGCAGATTTAA
78626255 AGATGCAGTG
Statistics
Matches: 679, Mismatches: 92, Indels: 22
0.86 0.12 0.03
Matches are distributed among these distances:
349 7 0.01
350 497 0.73
351 4 0.01
353 2 0.00
354 162 0.24
355 4 0.01
356 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.29
Consensus pattern (348 bp):
TCTTATCTCCCTAAGCAATAGTGGAGCAGATCAAAGATGGCAAATCTTATCTCCATGTATCGGCA
ATAGAGCAGATTTAAGCCACTAGTCTTATCTCTCTGAGGTAGCAAGAAAGTAGGTTGGCGATTGT
AGTCTTATCTTCCTGAGGTAGAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAGGAAGT
TGTGGAGCAGATCATGGCGAATCTTATCTTCATGTATTGGCAATGGAGCAGATTTTAGCCACTAG
CCTTATCTCTCTGAAGTAGCAAGAGAGCAGGTTGGCAATTGTAGTCTTATCTTCCTGAGGTAGCA
AGGAAGCAGACTAAAATTGAAGA
Found at i:78629399 original size:21 final size:21
Alignment explanation
Indices: 78629378--78629455 Score: 63
Period size: 21 Copynumber: 3.7 Consensus size: 21
78629368 CTTAAAATAA
*
78629378 TATAAATGTATTAATATCTAAT
1 TATAAATAT-TTAATATCTAAT
78629400 TATAAATATTTAATAGT-TATAT
1 TATAAATATTTAATA-TCTA-AT
* *
78629422 T-TAAATATTTAAAATATAAT
1 TATAAATATTTAATATCTAAT
*
78629442 T-TATATATTCTAAT
1 TATAAATATT-TAAT
78629456 TAAATTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
20 11 0.23
21 25 0.52
22 12 0.25
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (21 bp):
TATAAATATTTAATATCTAAT
Found at i:78630966 original size:9 final size:9
Alignment explanation
Indices: 78630954--78631012 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
78630944 TTTACGATTT
78630954 TTTTTATAA
1 TTTTTATAA
78630963 TTTTTA-AA
1 TTTTTATAA
*
78630971 GTATTTT-TTA
1 -T-TTTTATAA
*
78630981 TTATTATAA
1 TTTTTATAA
*
78630990 TTTTTACTAT
1 TTTTTA-TAA
78631000 TTTTTATAA
1 TTTTTATAA
78631009 TTTT
1 TTTT
78631013 AATATTAAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
8 5 0.13
9 21 0.54
10 13 0.33
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (9 bp):
TTTTTATAA
Found at i:78631000 original size:25 final size:26
Alignment explanation
Indices: 78630957--78631015 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
78630947 ACGATTTTTT
* *
78630957 TTATAATTTTTAAAGTATTTTTTATTA
1 TTATAATTTTT-AACTATTTTTTATAA
78630984 TTATAATTTTT-ACTATTTTTTATAA
1 TTATAATTTTTAACTATTTTTTATAA
*
78631009 TTTTAAT
1 TTATAAT
78631016 ATTAAATGCC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 18 0.62
27 11 0.38
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (26 bp):
TTATAATTTTTAACTATTTTTTATAA
Found at i:78631929 original size:26 final size:26
Alignment explanation
Indices: 78631878--78631929 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
78631868 TAGTTTGTTC
* * *
78631878 TAAATTACATGATATATATATATATA
1 TAAATAACATAATATAAATATATATA
78631904 TAAATAACATAATATAAAGTAT-TATA
1 TAAATAACATAATATAAA-TATATATA
78631930 AACTTTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (26 bp):
TAAATAACATAATATAAATATATATA
Found at i:78642819 original size:48 final size:48
Alignment explanation
Indices: 78642761--78643028 Score: 258
Period size: 48 Copynumber: 5.6 Consensus size: 48
78642751 TGTGTACTAC
* *
78642761 TGTAAGACCATGTCTGGGACATGGCGTCGGCCATGATATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCTAG
* * *** * * *
78642809 TGTAAAACCATGTCTGGTACATGGCATCGATGTTGATATGTGCGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCTAG
* *
78642857 TGTAAGACCATGTCTGGGACATGGCATCGACCA-CATCATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCATGAT-ATGAGAGCTAG
* * * *
78642905 TGTAAGACTATGTCTGGGACATGGCATC-AACATTGAGAAGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCA-TGATATGAGAGCTAG
* * * *
78642953 TGTAAGACCATGTTTGGGACATGGCATC-AGCC-TCGACATGTGAG-TCAA
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CCAT-GATATGAGAGCT-AG
* *
78643001 TGTAAGACCATGTTTGGAACATGGCATC
1 TGTAAGACCATGTCTGGGACATGGCATC
78643029 TGCAATTCGC
Statistics
Matches: 180, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
47 7 0.04
48 171 0.95
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCATGATATGAGAGCTAG
Found at i:78642918 original size:96 final size:96
Alignment explanation
Indices: 78642761--78643028 Score: 290
Period size: 96 Copynumber: 2.8 Consensus size: 96
78642751 TGTGTACTAC
* * * * *
78642761 TGTAAGACCATGTCTGGGACATGGCGTCGGCCATGAT-ATGAGAGCTAGTGTAAAACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCA-CATCATGAGAGCCAGTGTAAGACCATGTCTG
* * ** * * * * *
78642825 GTACATGGCATCGATGTTGATATGTGCGTTAG
65 GAACATGGCATCAACATTGAGAAGAGAGCTAG
*
78642857 TGTAAGACCATGTCTGGGACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACTATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGTCTGG
*
78642922 GACATGGCATCAACATTGAGAAGAGAGCTAG
66 AACATGGCATCAACATTGAGAAGAGAGCTAG
* * * * * *
78642953 TGTAAGACCATGTTTGGGACATGGCATC-AGCCTCGA-CATGTGAGTCAATGTAAGACCATGTTT
1 TGTAAGACCATGTCTGGGACATGGCATCGA-CCAC-ATCATGAGAGCCAGTGTAAGACCATGTCT
78643016 GGAACATGGCATC
64 GGAACATGGCATC
78643029 TGCAATTCGC
Statistics
Matches: 146, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
95 3 0.02
96 142 0.97
97 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (96 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACCACATCATGAGAGCCAGTGTAAGACCATGTCTGG
AACATGGCATCAACATTGAGAAGAGAGCTAG
Found at i:78643023 original size:144 final size:144
Alignment explanation
Indices: 78642761--78643028 Score: 344
Period size: 144 Copynumber: 1.9 Consensus size: 144
78642751 TGTGTACTAC
* ** * *
78642761 TGTAAGACCATGTCTGGGACATGGCGTCGGCCATGATATGAGAGCTAGTGTAAAACCATGTCTGG
1 TGTAAGACCATGTCTGGGACATGGCATCGAACATGAGAAGAGAGCTAGTGTAAAACCATGTCTGG
* * * * * * *
78642826 TACATGGCATCGATGTTGATATGTGCGTTAGTGTAAGACCATGTCTGGGACATGGCATCGACCAC
66 GACATGGCATCGATGTCGACATGTGAGTCAATGTAAGACCATGTCTGGAACATGGCATCGACCAC
78642891 ATCATGAGAGCCAG
131 ATCATGAGAGCCAG
* * *
78642905 TGTAAGACTATGTCTGGGACATGGCATC-AACATTGAGAAGAGAGCTAGTGTAAGACCATGTTTG
1 TGTAAGACCATGTCTGGGACATGGCATCGAACA-TGAGAAGAGAGCTAGTGTAAAACCATGTCTG
*
78642969 GGACATGGCATC-A-GCCTCGACATGTGAGTCAATGTAAGACCATGTTTGGAACATGGCATC
65 GGACATGGCATCGATG--TCGACATGTGAGTCAATGTAAGACCATGTCTGGAACATGGCATC
78643029 TGCAATTCGC
Statistics
Matches: 105, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
142 1 0.01
143 3 0.03
144 101 0.96
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (144 bp):
TGTAAGACCATGTCTGGGACATGGCATCGAACATGAGAAGAGAGCTAGTGTAAAACCATGTCTGG
GACATGGCATCGATGTCGACATGTGAGTCAATGTAAGACCATGTCTGGAACATGGCATCGACCAC
ATCATGAGAGCCAG
Found at i:78646509 original size:50 final size:50
Alignment explanation
Indices: 78646391--78646780 Score: 354
Period size: 51 Copynumber: 7.7 Consensus size: 50
78646381 GTTGTGAGAA
* * *** *
78646391 CACATGTGTAGTACTACGTGTAGGCTACTATGTGTTTAAAATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG--TTAGGT
* *
78646443 CACATGTGTGGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
* * * * * *
78646493 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTTGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGT
* * * * * **
78646544 CACATGTGTGGTACTAAGTGTAGGCCAGTACGTGTAAGAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG--TTAGGT
* * *
78646596 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
* * * * * * *
78646646 CGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT-GGTTAGGT
* * ** *
78646697 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGG-TTAGGT
*
78646748 CACA-GATGTGGTACTAAGTGCAGG-TA-TATGTGT
1 CACATG-TGTAGTACTAAGTGCAGGCTACTATGTGT
78646781 GTGAAAATTT
Statistics
Matches: 273, Mismatches: 59, Indels: 15
0.79 0.17 0.04
Matches are distributed among these distances:
49 7 0.03
50 88 0.32
51 102 0.37
52 76 0.28
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTTAGGT
Found at i:78646576 original size:101 final size:102
Alignment explanation
Indices: 78646442--78646771 Score: 306
Period size: 101 Copynumber: 3.2 Consensus size: 102
78646432 TGGTTTTAGG
* * *
78646442 TCACATGTGTGGTACTAAGTGCAGGCTACTACGTGTACCAGATGG-TTAGGTCGCATGTGTAGTA
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGGTTTAGGTCACATGTGTAGTA
78646506 CTAAGTGCAGGCTACTATGCGTACCTGATAGCTTTGA
66 CTAAGTGCAGGCTACTATGCGTACCTGATAGCTTTGA
* * * *
78646543 TCACATGTGTGGTACTAAGTGTAGGCCAGTACGTGTAAGAGATGGTTTTAGGTCACGTGTGTAGT
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGG-TTTAGGTCACATGTGTAGT
* * ** * * *
78646608 ACTAAGTGCAGGCTACTACGTGTACCAAAT-GGTTAGG
65 ACTAAGTGCAGGCTACTATGCGTACCTGATAGCTTTGA
* * * * * * * * * * * * *
78646645 TCGCATGTGTAGTACTAAGTGCAAGCTACTATGCGTACCCGATAGCTTCGATCACATGTGTGGTA
1 TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGGTTTAGGTCACATGTGTAGTA
* * *** * * *
78646710 CTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTTGG
66 CTAAGTGCAGGCTACTATGCGTACCTGATAGCTTTGA
78646747 TCACA-GATGTGGTACTAAGTGCAGG
1 TCACATG-TGTGGTACTAAGTGCAGG
78646772 TATATGTGTG
Statistics
Matches: 184, Mismatches: 41, Indels: 7
0.79 0.18 0.03
Matches are distributed among these distances:
101 80 0.43
102 62 0.34
103 42 0.23
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (102 bp):
TCACATGTGTGGTACTAAGTGCAGGCCACTACGTGTAACAGATGGTTTAGGTCACATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCTGATAGCTTTGA
Found at i:78646673 original size:153 final size:152
Alignment explanation
Indices: 78646391--78646771 Score: 581
Period size: 153 Copynumber: 2.5 Consensus size: 152
78646381 GTTGTGAGAA
* * * *
78646391 CACATGTGTAGTACTACGTGTAGGCTACTATGTGTTTAA-A-ATGGTTTTAGGTCACATGTGTGG
1 CACATGTGTGGTACTAAGTGTAGGCCACTATGTG--TAAGAGATGGTTTTAGGTCACGTGTGT-G
* *
78646454 TACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCGCATGTGTAGTACTAAGTGCAGGCT
63 TACTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCT
* *
78646519 ACTATGCGTACCTGATAGCTTTGAT
128 ACTATGCGTACCCGATAGCTTCGAT
* *
78646544 CACATGTGTGGTACTAAGTGTAGGCCAGTACGTGTAAGAGATGGTTTTAGGTCACGTGTGTAGTA
1 CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTAGGTCACGTGTGT-GTA
78646609 CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTAC
65 CTAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTAC
78646674 TATGCGTACCCGATAGCTTCGAT
130 TATGCGTACCCGATAGCTTCGAT
*
78646697 CACATGTGTGGTACTAAGTGCAGGCCACTATGTGTAAGAGATGGTTTT-GGTCACAGATGTG-GT
1 CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTAGGTCAC-G-TGTGTGT
78646760 ACTAAGTGCAGG
64 ACTAAGTGCAGG
78646772 TATATGTGTG
Statistics
Matches: 210, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
151 3 0.01
152 21 0.10
153 182 0.87
154 4 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (152 bp):
CACATGTGTGGTACTAAGTGTAGGCCACTATGTGTAAGAGATGGTTTTAGGTCACGTGTGTGTAC
TAAGTGCAGGCTACTACGTGTACCAAATGGTTAGGTCGCATGTGTAGTACTAAGTGCAAGCTACT
ATGCGTACCCGATAGCTTCGAT
Found at i:78653528 original size:17 final size:17
Alignment explanation
Indices: 78653506--78653538 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
78653496 TGAAACTACT
78653506 ATGCTACCTAACTTATA
1 ATGCTACCTAACTTATA
78653523 ATGCTACCTAACTTAT
1 ATGCTACCTAACTTAT
78653539 CTCTTAAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.36
Consensus pattern (17 bp):
ATGCTACCTAACTTATA
Found at i:78658449 original size:20 final size:20
Alignment explanation
Indices: 78658426--78658484 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
78658416 TAAACATGGT
78658426 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* *
78658446 ATGTATGCTATGCACATGAT
1 ATGTATGATATGCACATGAC
78658466 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
78658485 GGTATTCATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:78658566 original size:23 final size:23
Alignment explanation
Indices: 78658536--78658584 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
78658526 AGGAAGTGCA
78658536 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
78658559 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
78658582 AAA
1 AAA
78658585 AGAGGCTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:78658601 original size:25 final size:23
Alignment explanation
Indices: 78658536--78658605 Score: 88
Period size: 23 Copynumber: 3.0 Consensus size: 23
78658526 AGGAAGTGCA
*
78658536 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
*
78658559 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTAGGCCCCAGTTATT
78658582 AAAAGAGGC-TAGGCCTCCAGTTAT
1 -AAAG-GGCTTAGGCC-CCAGTTAT
78658606 ACGATAAAGC
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
23 23 0.53
24 9 0.21
25 11 0.26
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (23 bp):
AAAGGGCTTAGGCCCCAGTTATT
Found at i:78658831 original size:31 final size:31
Alignment explanation
Indices: 78658796--78658858 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
78658786 CGTTTACAGT
*
78658796 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
**
78658827 AAAGGCTTCAGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
78658858 A
1 A
78658859 CTATGAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:78666330 original size:40 final size:40
Alignment explanation
Indices: 78666246--78666469 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
78666236 TTGAATGATG
* * * *
78666246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78666286 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78666326 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
78666365 TCCGGGTTAAGTCCCGAAAGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78666405 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
78666446 -CCGAGCTATGT-CCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78666470 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 18, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
39 47 0.29
40 104 0.65
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78666382 original size:79 final size:79
Alignment explanation
Indices: 78666246--78666469 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 79
78666236 TTGAATGATG
* * * * *
78666246 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGCTAAG-TCCGAAGGCATT
*
78666310 TGTGCGAGATACTAAT
64 TGTGCGAGATACTAAA
* * *
78666326 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAAGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGT-CCGAAGGCATTT
*
78666390 GTGCGAGTTACTAAA
65 GTGCGAGATACTAAA
* * *
78666405 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGAGCTATGTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCGAAGGCATTT
78666469 G
65 G
78666470 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 71 0.57
80 50 0.40
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:78666461 original size:119 final size:119
Alignment explanation
Indices: 78666246--78666467 Score: 279
Period size: 119 Copynumber: 1.9 Consensus size: 119
78666236 TTGAATGATG
* *
78666246 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAAGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* *
78666311 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
* * * * **
78666365 TCCGGGTTAAGTCCCGAAAGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAAGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
78666428 TTGTGCGAGTTACT-ATAACCGAGCTATGTCCGAAGGCATT
64 TTGTGCGAGATACTAAT-ACCGAGCTAAGCCCGAAGGCATT
78666468 TGAACGAGGA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
118 3 0.03
119 77 0.89
120 7 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAAGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
Found at i:78666487 original size:119 final size:119
Alignment explanation
Indices: 78666246--78666492 Score: 261
Period size: 119 Copynumber: 2.1 Consensus size: 119
78666236 TTGAATGATG
* * *
78666246 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAAGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
78666311 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
78666365 TCCGGGTTAAGTCCCGAAAGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAAGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
78666428 TTGTGCGAGTTACT-ATAACCGAGCTATGTCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGAGCTAAGCCCGAAGGCATTGGAACGAGTGA-CTAAA
78666484 TCC-GGTTAA
1 TCCGGGTTAA
78666493 ATTCCGAAGG
Statistics
Matches: 106, Mismatches: 18, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
118 10 0.09
119 89 0.84
120 7 0.07
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAAGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:78667444 original size:25 final size:26
Alignment explanation
Indices: 78667409--78667457 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
78667399 TCTCCAATTC
*
78667409 TTAAACTTGATTTTGA-AATAAAAAA
1 TTAAACATGATTTTGATAATAAAAAA
*
78667434 TTAAACATGATTTTTATAATAAAA
1 TTAAACATGATTTTGATAATAAAA
78667458 CTTATTCTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.67
26 7 0.33
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TTAAACATGATTTTGATAATAAAAAA
Found at i:78667521 original size:45 final size:46
Alignment explanation
Indices: 78667472--78667562 Score: 139
Period size: 46 Copynumber: 2.0 Consensus size: 46
78667462 TTCTTCACAG
*
78667472 AATTAAA-TTCCTACTATAAAATTTTTAAAAAATACAACCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
* * *
78667517 AATTAAATTTCCTACTTTGAAATTTTCAAAAAATACAATCACTATA
1 AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
78667563 GACATATTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 7 0.17
46 34 0.83
ACGTcount: A:0.48, C:0.15, G:0.01, T:0.35
Consensus pattern (46 bp):
AATTAAATTTCCTACTATAAAATTTTCAAAAAATACAACCACTATA
Found at i:78672722 original size:120 final size:120
Alignment explanation
Indices: 78672521--78673741 Score: 2266
Period size: 120 Copynumber: 10.2 Consensus size: 120
78672511 TTTTCAAGTT
78672521 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78672586 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
78672641 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78672706 TAATATAAGAACATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
78672760 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78672825 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
78672880 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78672945 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
78673000 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATACTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
78673065 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
78673120 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78673185 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
78673240 ATACATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
78673305 TAATATAAGAATATTAATTATTAAGAATTTCATT-AATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
78673359 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78673424 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
78673479 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
* *
78673544 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
*
78673599 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78673664 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
78673719 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
78673742 TAAATATGAT
Statistics
Matches: 1080, Mismatches: 19, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
119 233 0.22
120 847 0.78
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATAGTTTAATTAAA
Found at i:78673343 original size:16 final size:17
Alignment explanation
Indices: 78673302--78673343 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
78673292 GATTTGAGTA
78673302 AATTAATATAAGAATATT
1 AATTAAT-TAAGAATATT
78673320 AATT-ATTAAGAAT-TT
1 AATTAATTAAGAATATT
*
78673335 CATTAATTA
1 AATTAATTA
78673344 TATATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 5 0.23
16 11 0.50
17 2 0.09
18 4 0.18
ACGTcount: A:0.50, C:0.02, G:0.05, T:0.43
Consensus pattern (17 bp):
AATTAATTAAGAATATT
Found at i:78673423 original size:479 final size:480
Alignment explanation
Indices: 78672521--78673741 Score: 2284
Period size: 479 Copynumber: 2.5 Consensus size: 480
78672511 TTTTCAAGTT
78672521 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
** *
78672586 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
78672651 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
*
78672716 ACATTAATTATTAAGAA-TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
78672780 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
261 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
**
78672845 TTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
326 TTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
*
78672910 ATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
391 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
*
78672975 TTTTAAATTATATAGTTTAATTAAA
456 TATTAAATTATATAGTTTAATTAAA
*
78673000 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATACTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
78673065 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
78673130 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
*
78673195 ATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATACATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
78673260 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
261 GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
*
78673325 TTAAGAATTTCATT-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
326 TTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
78673389 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
391 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
*
78673454 TATTAAATTATATATTTTAATTAAA
456 TATTAAATTATATAGTTTAATTAAA
*
78673479 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
78673544 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
78673609 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
* *
78673674 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
196 ATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
78673739 GTT
261 GTT
78673742 TAAATATGAT
Statistics
Matches: 723, Mismatches: 18, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
479 600 0.83
480 123 0.17
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (480 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
ATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
GTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTA
TTAAGAATTTCATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
TATTAAATTATATAGTTTAATTAAA
Found at i:78673478 original size:18 final size:17
Alignment explanation
Indices: 78673450--78673484 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78673440 ATTATTAAGA
*
78673450 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
78673467 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
78673485 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:78673663 original size:599 final size:599
Alignment explanation
Indices: 78672521--78673741 Score: 2300
Period size: 599 Copynumber: 2.0 Consensus size: 599
78672511 TTTTCAAGTT
78672521 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
*
78672586 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATACATTTAA
78672651 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
*
78672716 ACATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 ACATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
*
78672781 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
*
78672846 TAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
326 TAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
* *
78672911 TTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTT
391 TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTC
*
78672976 TTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
456 ATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
*
78673041 TCATATACTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTAT
521 TCATATACTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTAT
78673106 ATATTTTAATTAAA
586 ATATTTTAATTAAA
78673120 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
78673185 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATACATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATACATTTAA
78673250 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
* *
78673315 ATATTAATTATTAAGAATTTCATT-AATTATATATTTTAATTAAAATATATTTAATAATAATTAT
196 ACATTAATTATTAAGAATTT-ATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTAT
78673379 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
260 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
*
78673444 TTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
325 TTAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTAT
78673509 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
390 ATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTT
*
78673574 CATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGT
455 CATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGT
* *
78673639 ATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTTATTAAATTA
520 ATCATATACTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTA
78673704 TATATTTTAATTAAA
585 TATATTTTAATTAAA
78673719 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
78673742 TAAATATGAT
Statistics
Matches: 607, Mismatches: 14, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
599 605 1.00
600 2 0.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (599 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATACATTTAA
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
ACATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
TAAGAATTTTATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATA
TTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTC
ATTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTA
TCATATACTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAGAATTTCATTAAATTAT
ATATTTTAATTAAA
Found at i:78673718 original size:18 final size:17
Alignment explanation
Indices: 78673690--78673724 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
78673680 ATTATTAAGA
*
78673690 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
78673707 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
78673725 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:78673995 original size:17 final size:16
Alignment explanation
Indices: 78673960--78674028 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
78673950 GATTAGCTAT
*
78673960 TACACCTCTAATTCAA
1 TACACCTCTAATCCAA
78673976 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
78673993 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
* *
78674009 TACGCCTCTAATCTAA
1 TACACCTCTAATCCAA
78674025 TACA
1 TACA
78674029 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
16 33 0.69
17 15 0.31
ACGTcount: A:0.36, C:0.35, G:0.01, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:78682898 original size:40 final size:40
Alignment explanation
Indices: 78682814--78683038 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
78682804 TTGAATGATG
* * * *
78682814 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
78682854 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78682894 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78682933 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
78682973 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
78683014 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
78683039 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:78685266 original size:42 final size:42
Alignment explanation
Indices: 78685153--78685317 Score: 109
Period size: 43 Copynumber: 3.8 Consensus size: 42
78685143 AAAGCTCGTA
* ** ***
78685153 CAATGCCAACGTCCCAGATGTGGTCTTACATGTAATCA-AATAT
1 CAATGCCAACATCCCAGACATGGTCTTACACAAAAT-ATAA-AT
* ** * *
78685196 CGATGCCATTATCCCATACAGGGTCTTACACAAAAT-TAAAT
1 CAATGCCAACATCCCAGACATGGTCTTACACAAAATATAAAT
* * ** * *
78685237 ACAATGTCGATGTCCCAGACATGGTCTTACAGATAAATCATAAGT
1 -CAATGCCAACATCCCAGACATGGTCTTACACA-AAAT-ATAAAT
78685282 CAATGCCAACATCCCAGACATGGTCTTACACGAAAA
1 CAATGCCAACATCCCAGACATGGTCTTACAC-AAAA
78685318 CACATATATC
Statistics
Matches: 91, Mismatches: 25, Indels: 11
0.72 0.20 0.09
Matches are distributed among these distances:
41 2 0.02
42 26 0.29
43 29 0.32
44 29 0.32
45 5 0.05
ACGTcount: A:0.36, C:0.24, G:0.15, T:0.25
Consensus pattern (42 bp):
CAATGCCAACATCCCAGACATGGTCTTACACAAAATATAAAT
Found at i:78690185 original size:18 final size:18
Alignment explanation
Indices: 78690162--78690196 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
78690152 GAATTGAGTC
*
78690162 GATAAAATAATTTAATTA
1 GATAAAATAATTAAATTA
*
78690180 GATAAATTAATTAAATT
1 GATAAAATAATTAAATT
78690197 TATTTGAAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (18 bp):
GATAAAATAATTAAATTA
Found at i:78690221 original size:24 final size:24
Alignment explanation
Indices: 78690181--78690247 Score: 61
Period size: 23 Copynumber: 2.9 Consensus size: 24
78690171 ATTTAATTAG
* *
78690181 ATAAATTAATTAA-ATTTATTTGAA
1 ATAAA-TAAATAATATTTATTGGAA
*
78690205 ATAAATAAATAATATTT-TGGGAA
1 ATAAATAAATAATATTTATTGGAA
*
78690228 ATAGA-AAA-AATATTTATTGG
1 ATAAATAAATAATATTTATTGG
78690248 GTTGGATGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
21 7 0.19
22 6 0.17
23 14 0.39
24 9 0.25
ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39
Consensus pattern (24 bp):
ATAAATAAATAATATTTATTGGAA
Found at i:78691362 original size:33 final size:33
Alignment explanation
Indices: 78691323--78691388 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
78691313 ACACAAAAAA
78691323 CATAGAATGCTATTTAGGGCCTCTTAGTGTTTT
1 CATAGAATGCTATTTAGGGCCTCTTAGTGTTTT
78691356 CATAGAATGCTATTTAGGGCCTCTTAGTGTTTT
1 CATAGAATGCTATTTAGGGCCTCTTAGTGTTTT
78691389 AGGCAAGGCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.42
Consensus pattern (33 bp):
CATAGAATGCTATTTAGGGCCTCTTAGTGTTTT
Found at i:78699843 original size:25 final size:26
Alignment explanation
Indices: 78699794--78699845 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
78699784 ATTTTTGAAG
*
78699794 ACTTTTATTTATTATTTATTATTTTT
1 ACTTTTATCTATTATTTATTATTTTT
78699820 ACTTTTATCT-TTATTTATCT-TTTTT
1 ACTTTTATCTATTATTTAT-TATTTTT
78699845 A
1 A
78699846 AATTACTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.71
Consensus pattern (26 bp):
ACTTTTATCTATTATTTATTATTTTT
Found at i:78705049 original size:23 final size:23
Alignment explanation
Indices: 78704973--78705049 Score: 86
Period size: 22 Copynumber: 3.3 Consensus size: 23
78704963 TTGATAAACA
* *
78704973 GTAAGCTCTATTGAGCAGAAAACG
1 GTAAGCTCTATTGAGCTG-AATCG
*
78704997 GTAAGCTCTATTGAGCTGAAT-A
1 GTAAGCTCTATTGAGCTGAATCG
*
78705019 GTAAGCTCT-TTCGAGTTGAATCG
1 GTAAGCTCTATT-GAGCTGAATCG
78705042 GTAAGCTC
1 GTAAGCTC
78705050 CGATGAGCTG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.04
22 17 0.37
23 10 0.22
24 17 0.37
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAATCG
Found at i:78707264 original size:36 final size:36
Alignment explanation
Indices: 78707217--78707289 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
78707207 TATTTCCCAT
* *
78707217 CTTTCTTACCTTTCA-CCAGGAGCTTTCACTATTCAC
1 CTTTCTTACCTTTCAGCAAGGA-CTTTCACTATCCAC
78707253 CTTTCTTACCTTTCAGCAAGGACTTTCACTATCCAC
1 CTTTCTTACCTTTCAGCAAGGACTTTCACTATCCAC
78707289 C
1 C
78707290 ACTTTTCTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
36 29 0.85
37 5 0.15
ACGTcount: A:0.21, C:0.34, G:0.08, T:0.37
Consensus pattern (36 bp):
CTTTCTTACCTTTCAGCAAGGACTTTCACTATCCAC
Found at i:78713603 original size:9 final size:9
Alignment explanation
Indices: 78713591--78713645 Score: 65
Period size: 9 Copynumber: 5.7 Consensus size: 9
78713581 ATAAGAAAAG
78713591 TAAATTAAA
1 TAAATTAAA
*
78713600 TAAATTTAA
1 TAAATTAAA
78713609 TAAATTTTATCAA
1 TAAA--TTA--AA
78713622 TAAATTAAA
1 TAAATTAAA
78713631 TAAATTAAA
1 TAAATTAAA
78713640 TAAATT
1 TAAATT
78713646 TTATCCCTCC
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 29 0.73
11 5 0.12
13 6 0.15
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (9 bp):
TAAATTAAA
Found at i:78713626 original size:31 final size:31
Alignment explanation
Indices: 78713591--78713650 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
78713581 ATAAGAAAAG
*
78713591 TAAATTAAATAAATTTAATAAATTTTATCAA
1 TAAATTAAATAAATTAAATAAATTTTATCAA
78713622 TAAATTAAATAAATTAAATAAATTTTATC
1 TAAATTAAATAAATTAAATAAATTTTATC
78713651 CCTCCAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (31 bp):
TAAATTAAATAAATTAAATAAATTTTATCAA
Found at i:78732082 original size:47 final size:47
Alignment explanation
Indices: 78732001--78732164 Score: 167
Period size: 47 Copynumber: 3.5 Consensus size: 47
78731991 GCCGATGCCG
* * * *
78732001 TGTCCCAGACACGGTCTTACACAGGCTTAT-ATCTCAAGTTGAAGCCA
1 TGTCCCAGACATGGTCTTACACTGAC-TATCATCTCAAGTCGAAGCCA
* *
78732048 TGTCCAAGACATGGTCTTACACTGACTATCATCTCATAGTCGACG-CA
1 TGTCCCAGACATGGTCTTACACTGACTATCATCTCA-AGTCGAAGCCA
* *
78732095 TGTCCCAGACAT-GTCTTACACT-AGC-ACTCGTCTCAATGTCGATGCCA
1 TGTCCCAGACATGGTCTTACACTGA-CTA-TCATCTCAA-GTCGAAGCCA
*
78732142 TGTCCTAGACATGGTCTTACACT
1 TGTCCCAGACATGGTCTTACACT
78732165 AGCTCTCACA
Statistics
Matches: 100, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
45 3 0.03
46 27 0.27
47 54 0.54
48 16 0.16
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
TGTCCCAGACATGGTCTTACACTGACTATCATCTCAAGTCGAAGCCA
Found at i:78743039 original size:37 final size:37
Alignment explanation
Indices: 78742989--78743071 Score: 148
Period size: 37 Copynumber: 2.2 Consensus size: 37
78742979 CAGCCACAAT
*
78742989 AAACAACATTCCATTTGTGTATTTTACTCATCTATGA
1 AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
78743026 AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
1 AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
*
78743063 AAATAACAT
1 AAACAACAT
78743072 CTTGGTATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.36, C:0.19, G:0.07, T:0.37
Consensus pattern (37 bp):
AAACAACATTCCATTTGTGCATTTTACTCATCTATGA
Found at i:78753414 original size:72 final size:71
Alignment explanation
Indices: 78753278--78753436 Score: 171
Period size: 72 Copynumber: 2.3 Consensus size: 71
78753268 CTAGCCAATT
* * * * * *
78753278 TATCTCGTAGCTCTCTTGTCTACATGGTATCCTTCACTTGGAATCACACATGTGACCTAGCTACA
1 TATCCCGTAGCTCTCTTGTCTACATGGGATACATCAC-TCGAATCACACATGCGACCTAGCTACA
78753343 TTTATCC
65 TTTATCC
* *
78753350 TATCCCGTAGCTCTCTTGTCTACATGGGATACATC-C-CGTATCTCACATGCGACCTAGCTAC-T
1 TATCCCGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGCGACCTAGCTACAT
** **
78753412 ACATAG
66 TTATCC
*
78753418 TATCTCGTAGCTCTCTTGT
1 TATCCCGTAGCTCTCTTGT
78753437 ACACATGATG
Statistics
Matches: 74, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
68 21 0.28
69 21 0.28
71 1 0.01
72 31 0.42
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (71 bp):
TATCCCGTAGCTCTCTTGTCTACATGGGATACATCACTCGAATCACACATGCGACCTAGCTACAT
TTATCC
Found at i:78765315 original size:42 final size:43
Alignment explanation
Indices: 78765219--78765317 Score: 121
Period size: 42 Copynumber: 2.3 Consensus size: 43
78765209 GCCAACTTCT
* * *
78765219 CAGACGTGGTCTTACATGTAATCAAACATCGATACCACTGTCC
1 CAGACATGGTCTTACATGAAATCAAACATCGATACCAATGTCC
* * *
78765262 CAGACAAGGTCTTACATGAAATCATATA-CGA-AGCCAATGTCC
1 CAGACATGGTCTTACATGAAATCAAACATCGATA-CCAATGTCC
78765304 CAGACATGGTCTTA
1 CAGACATGGTCTTA
78765318 TATGTAAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 1 0.02
42 24 0.50
43 23 0.48
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
CAGACATGGTCTTACATGAAATCAAACATCGATACCAATGTCC
Found at i:78767893 original size:12 final size:12
Alignment explanation
Indices: 78767870--78767910 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
78767860 GTCAGGCTTT
78767870 ACACGG-CTAGC
1 ACACGGCCTAGC
78767881 ACACGGCCTAGC
1 ACACGGCCTAGC
*
78767893 ACACGGCCTAAC
1 ACACGGCCTAGC
78767905 ACACGG
1 ACACGG
78767911 GAGTGTGAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
11 6 0.21
12 22 0.79
ACGTcount: A:0.29, C:0.39, G:0.24, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:78776742 original size:2 final size:2
Alignment explanation
Indices: 78776735--78776760 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
78776725 AGCTTTCTTT
78776735 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
78776761 AAGTCATCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:78777109 original size:29 final size:29
Alignment explanation
Indices: 78777075--78777149 Score: 132
Period size: 29 Copynumber: 2.6 Consensus size: 29
78777065 TCATATTACA
78777075 TTTTAGTCACTTATGTTTGAAATGCTATG
1 TTTTAGTCACTTATGTTTGAAATGCTATG
*
78777104 TTTTAGTCACTTATGTTTGAAATGTTATG
1 TTTTAGTCACTTATGTTTGAAATGCTATG
*
78777133 ATTTAGTCACTTATGTT
1 TTTTAGTCACTTATGTT
78777150 ATCGTTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.24, C:0.09, G:0.16, T:0.51
Consensus pattern (29 bp):
TTTTAGTCACTTATGTTTGAAATGCTATG
Found at i:78781614 original size:12 final size:13
Alignment explanation
Indices: 78781597--78781625 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
78781587 TTGTGAAAAT
78781597 AAAAT-AAAATAA
1 AAAATAAAAATAA
78781609 AAAATAAAAATAA
1 AAAATAAAAATAA
78781622 AAAA
1 AAAA
78781626 CACAAAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:78790368 original size:23 final size:23
Alignment explanation
Indices: 78790342--78790386 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
78790332 TGGGTATGTG
* * *
78790342 ATGACGTTATTTTATAAATATGC
1 ATGAAGTTATCTTAAAAATATGC
*
78790365 ATGAATTTATCTTAAAAATATG
1 ATGAAGTTATCTTAAAAATATG
78790387 TTGAATTGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (23 bp):
ATGAAGTTATCTTAAAAATATGC
Found at i:78793425 original size:40 final size:37
Alignment explanation
Indices: 78793341--78793432 Score: 103
Period size: 40 Copynumber: 2.4 Consensus size: 37
78793331 ACCAGCTCCG
* * * *
78793341 ACCAACCCAACACACCATGTGGGGATAGAATCGACTC
1 ACCAACCCTACACACCATATGGGGATAGAATCAACCC
*
78793378 ACTCAACCCTACACACCAAGTATGGGGATATAATCAACCC
1 AC-CAACCCTACACACC-A-TATGGGGATAGAATCAACCC
78793418 ATCCAACCCTACACA
1 A-CCAACCCTACACA
78793433 TCAAAAGGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
37 2 0.04
38 13 0.28
39 1 0.02
40 29 0.63
41 1 0.02
ACGTcount: A:0.37, C:0.35, G:0.13, T:0.15
Consensus pattern (37 bp):
ACCAACCCTACACACCATATGGGGATAGAATCAACCC
Found at i:78795247 original size:18 final size:19
Alignment explanation
Indices: 78795220--78795270 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
78795210 GTCGAAAATT
78795220 GTATCGATACTTACT-CAA
1 GTATCGATACTTACTACAA
* *
78795238 GTATCAATACATTTCTAACAA
1 GTATCGATAC-TTACT-ACAA
78795259 GTATCGATACTT
1 GTATCGATACTT
78795271 TTGTATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 9 0.33
19 4 0.15
20 2 0.07
21 12 0.44
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (19 bp):
GTATCGATACTTACTACAA
Found at i:78802033 original size:33 final size:33
Alignment explanation
Indices: 78801991--78802057 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
78801981 GTGTTTTGGT
78801991 ACAAGTAAACTTAAACCATTTATACACAAAATG
1 ACAAGTAAACTTAAACCATTTATACACAAAATG
* *
78802024 ACAAGTAAACTTAAACCATTTGTGCACAAAATG
1 ACAAGTAAACTTAAACCATTTATACACAAAATG
78802057 A
1 A
78802058 AGTTTGTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.24
Consensus pattern (33 bp):
ACAAGTAAACTTAAACCATTTATACACAAAATG
Found at i:78803544 original size:14 final size:15
Alignment explanation
Indices: 78803525--78803554 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
78803515 TGGAAAATTT
78803525 AATAATTTTAA-AAA
1 AATAATTTTAATAAA
78803539 AATAATTTTAATAAA
1 AATAATTTTAATAAA
78803554 A
1 A
78803555 GTTCAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
AATAATTTTAATAAA
Found at i:78805980 original size:13 final size:13
Alignment explanation
Indices: 78805962--78805988 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
78805952 CCACCTTAGA
78805962 AATCCAACCATAT
1 AATCCAACCATAT
78805975 AATCCAACCATAT
1 AATCCAACCATAT
78805988 A
1 A
78805989 CTTTTATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (13 bp):
AATCCAACCATAT
Found at i:78806869 original size:16 final size:16
Alignment explanation
Indices: 78806848--78806893 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
78806838 TTATTAAATT
78806848 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
78806864 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
*
78806879 AT-TATGTTAAATTAT
1 ATATAT-TTTAATTAT
78806894 CTATATTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 2 0.08
15 11 0.44
16 12 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:78806902 original size:107 final size:108
Alignment explanation
Indices: 78806788--78806998 Score: 379
Period size: 107 Copynumber: 2.0 Consensus size: 108
78806778 TATAGTATTA
* * *
78806788 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
*
78806853 TTTTAATTATAATATATTTAATAATAATTATG-TTAAATTATC
66 TTTTAATTACAATATATTTAATAATAATTATGTTTAAATTATC
78806895 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
1 TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
78806960 TTTTAATTACAATATATTTAATAATAATTATGTTTAAAT
66 TTTTAATTACAATATATTTAATAATAATTATGTTTAAAT
78806999 ATGATTAAAT
Statistics
Matches: 99, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
107 93 0.94
108 6 0.06
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (108 bp):
TATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAAAATTTTATTAAATTATATA
TTTTAATTACAATATATTTAATAATAATTATGTTTAAATTATC
Found at i:78807222 original size:45 final size:44
Alignment explanation
Indices: 78807122--78807231 Score: 133
Period size: 45 Copynumber: 2.6 Consensus size: 44
78807112 TTTTCCATTA
78807122 TGCTATTACACCTCTATT-C----CATTCAACCAAACATAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
* * *
78807161 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGT-TGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACA-TAAGA-T
78807206 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
78807232 CCTCTAATCC
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
39 16 0.27
40 1 0.02
44 16 0.27
45 26 0.44
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACATAAGAT
Found at i:78807231 original size:16 final size:16
Alignment explanation
Indices: 78807212--78807279 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
78807202 GATTTGCTAT
* *
78807212 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
78807228 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
78807244 TACACCTCCAATCCAA
1 TACACCTCTAATCCAA
78807260 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
78807276 TACA
1 TACA
78807280 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.38, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:78829132 original size:15 final size:15
Alignment explanation
Indices: 78829112--78829141 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
78829102 CTTAATTTAC
78829112 CCACTTTTTTAAGAA
1 CCACTTTTTTAAGAA
78829127 CCACTTTTTTAAGAA
1 CCACTTTTTTAAGAA
78829142 TGATTATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.07, T:0.40
Consensus pattern (15 bp):
CCACTTTTTTAAGAA
Found at i:78833348 original size:11 final size:11
Alignment explanation
Indices: 78833323--78833357 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
78833313 GGTAAAACGG
78833323 TAAATAAATAAT
1 TAAATAAA-AAT
*
78833335 TAAATATAAAT
1 TAAATAAAAAT
78833346 TAAATAAAAAT
1 TAAATAAAAAT
78833357 T
1 T
78833358 TAGTTGTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 14 0.67
12 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
TAAATAAAAAT
Found at i:78834627 original size:20 final size:20
Alignment explanation
Indices: 78834590--78834628 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
78834580 TTGTACGGGA
* * *
78834590 TTGCACTTCGGTGTCTCTAT
1 TTGCACTTAGATGCCTCTAT
78834610 TTGCACTTAGATGCCTCTA
1 TTGCACTTAGATGCCTCTA
78834629 ATTACACAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.15, C:0.26, G:0.18, T:0.41
Consensus pattern (20 bp):
TTGCACTTAGATGCCTCTAT
Found at i:78836994 original size:27 final size:29
Alignment explanation
Indices: 78836963--78837037 Score: 77
Period size: 27 Copynumber: 2.7 Consensus size: 29
78836953 AAGATAAATG
78836963 TTAAATTAAATTTAATATTAAATC-T-TA
1 TTAAATTAAATTTAATATTAAATCTTGTA
* ** * *
78836990 TTAAAAT-AATAGAATGTT-TATCTTGTA
1 TTAAATTAAATTTAATATTAAATCTTGTA
78837017 TTAAATTAAATTTAATATTAA
1 TTAAATTAAATTTAATATTAA
78837038 GATAATCACT
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
25 3 0.09
26 9 0.26
27 14 0.41
28 8 0.24
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.47
Consensus pattern (29 bp):
TTAAATTAAATTTAATATTAAATCTTGTA
Found at i:78843843 original size:47 final size:47
Alignment explanation
Indices: 78843765--78844255 Score: 766
Period size: 47 Copynumber: 10.3 Consensus size: 47
78843755 CCCTTCAGGA
* * * * * *
78843765 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78843812 CCTGTCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78843859 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78843906 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78843953 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78844002 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78844049 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78844098 CTTATCACATCTATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
78844145 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
78844194 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
78844241 CTTATCACATATATA
1 CTTATCACATATATA
78844256 TATACACTTT
Statistics
Matches: 412, Mismatches: 26, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
47 277 0.67
49 135 0.33
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78843999 original size:96 final size:96
Alignment explanation
Indices: 78843765--78844271 Score: 815
Period size: 96 Copynumber: 5.3 Consensus size: 96
78843755 CCCTTCAGGA
* * * * * * *
78843765 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78843828 ACTTTCACATTCATCACATCGGCTATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
78843859 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
78843922 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
78843953 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78844018 ACTTTCACATTCATCACATCGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
78844049 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATCTATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78844114 ACTTTCACATTCATCATATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
78844145 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
78844210 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
78844241 CTTATCACATATATATATACACTTTCACATT
1 CTTATCAC--ATATATATACACTTTCACATT
78844272 TATTCAAATA
Statistics
Matches: 384, Mismatches: 23, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
93 1 0.00
94 89 0.23
96 273 0.71
98 21 0.05
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:78844021 original size:143 final size:141
Alignment explanation
Indices: 78843765--78844255 Score: 775
Period size: 143 Copynumber: 3.4 Consensus size: 141
78843755 CCCTTCAGGA
* * * * * * * *
78843765 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
78843830 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
* * *
78843895 AGCTATTAGGC
131 GGCCATTCGGC
78843906 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
78843971 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
78844036 TCGGCCATTCGGC
129 TCGGCCATTCGGC
* *
78844049 CTTATCACATATATATACACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATCTATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
78844114 ACTTTCACATTCATCATATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
*
78844179 CATTGGCCATTCGGC
127 CATCGGCCATTCGGC
*
78844194 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
78844256 TATACACTTT
Statistics
Matches: 325, Mismatches: 19, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
141 47 0.14
143 186 0.57
145 92 0.28
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTCGGC
Found at i:78861637 original size:29 final size:29
Alignment explanation
Indices: 78861578--78861658 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
78861568 GTTGTGAGAT
* * *
78861578 TGGCACTAGGTGTGCGAACTTGAAATGCA
1 TGGCACTAAGTGTGCGAAGTTGAAATACA
*
78861607 TGGCACTAAGTGTGCG-AGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAAGTTGAAA-TACA
* *
78861636 TGGCACTAAGCGTGCGCAGTTGA
1 TGGCACTAAGTGTGCGAAGTTGA
78861659 TTATTAAGCA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
28 6 0.14
29 33 0.75
30 5 0.11
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAAGTTGAAATACA
Found at i:78866303 original size:10 final size:10
Alignment explanation
Indices: 78866253--78866304 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
78866243 AAATCTGTCG
*
78866253 AAAA-TAATC
1 AAAATTAATT
*
78866262 AAAATTAATC
1 AAAATTAATT
78866272 AAAATTAAATAT
1 AAAATT-AAT-T
*
78866284 ATAATTAATT
1 AAAATTAATT
78866294 AAAATTAATT
1 AAAATTAATT
78866304 A
1 A
78866305 TGTTAATAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.11
10 22 0.59
11 6 0.16
12 5 0.14
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTAATT
Found at i:78868612 original size:19 final size:19
Alignment explanation
Indices: 78868577--78868614 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
78868567 GACATACGAG
*
78868577 TTAATATTTTATTATTTAT
1 TTAATATTTTATAATTTAT
78868596 TTAATA-TTTATGAATTTAT
1 TTAATATTTTAT-AATTTAT
78868615 ATTAGGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (19 bp):
TTAATATTTTATAATTTAT
Found at i:78873411 original size:40 final size:40
Alignment explanation
Indices: 78873367--78873628 Score: 310
Period size: 39 Copynumber: 6.7 Consensus size: 40
78873357 GCTCCTCGTT
* *
78873367 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
78873407 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78873447 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
78873486 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
**
78873525 CAAATGCCTTCGGG-CTTAGCCTAGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
78873564 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
78873605 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78873629 CATCATTCAA
Statistics
Matches: 199, Mismatches: 15, Indels: 17
0.86 0.06 0.07
Matches are distributed among these distances:
38 2 0.01
39 124 0.62
40 62 0.31
41 11 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:78881492 original size:79 final size:78
Alignment explanation
Indices: 78881390--78881612 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
78881380 GCTCCTCGTT
* *
78881390 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
78881455 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
78881470 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
78881533 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
78881548 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
78881611 GA
63 GA
78881613 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:78881507 original size:39 final size:40
Alignment explanation
Indices: 78881390--78881612 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
78881380 GCTCCTCGTT
* *
78881390 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
78881430 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78881470 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78881509 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
78881548 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
78881589 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78881613 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:78887290 original size:37 final size:37
Alignment explanation
Indices: 78887231--78887413 Score: 321
Period size: 37 Copynumber: 4.9 Consensus size: 37
78887221 AGCTCAGACG
* *
78887231 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
*
78887268 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
78887305 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
*
78887342 AAATATCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
*
78887379 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
78887414 ATATATTTCC
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
Found at i:78887857 original size:53 final size:47
Alignment explanation
Indices: 78887622--78887912 Score: 411
Period size: 47 Copynumber: 6.1 Consensus size: 47
78887612 ACACGTTTCG
* * * **
78887622 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* * *
78887669 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
78887716 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
78887763 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
* ***
78887810 CATTGGCCATTCGGCCTTATCACGCATATATATATATAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATACGCAT--GTTCACATTCATCA
*
78887863 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
78887910 CAT
1 CAT
78887913 AAAATCCTAA
Statistics
Matches: 222, Mismatches: 16, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
47 172 0.77
49 7 0.03
51 7 0.03
53 36 0.16
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
Found at i:78887894 original size:147 final size:141
Alignment explanation
Indices: 78887622--78887912 Score: 447
Period size: 147 Copynumber: 2.0 Consensus size: 141
78887612 ACACGTTTCG
* **
78887622 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
78887687 ATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
66 ATCGCATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
*
78887752 CACATTCATCA
131 CACATCCATCA
* *
78887763 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
78887828 ATCACGCATATATATATATAGGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
66 AT--CGC--ATATATACAT--GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACG
78887893 CATGTTCACATCCATCA
125 CATGTTCACATCCATCA
78887910 CAT
1 CAT
78887913 AAAATCCTAA
Statistics
Matches: 135, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
141 62 0.46
143 2 0.01
145 8 0.06
147 63 0.47
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (141 bp):
CATTAGCCATTCGGCCTTACCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCGCATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACGCATGTT
CACATCCATCA
Found at i:78889982 original size:85 final size:85
Alignment explanation
Indices: 78889853--78890031 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
78889843 TATTTTATTG
*
78889853 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
78889918 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
78889938 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
78890003 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
78890023 CCCATGCTC
1 CCCATGCTC
78890032 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:78896781 original size:17 final size:19
Alignment explanation
Indices: 78896751--78896787 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
78896741 TTAACAATAA
78896751 TTTTATCTCAAAAA-TATT
1 TTTTATCTCAAAAAGTATT
*
78896769 TTTTAT-TCTAAAAGTATT
1 TTTTATCTCAAAAAGTATT
78896787 T
1 T
78896788 CTGAAAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (19 bp):
TTTTATCTCAAAAAGTATT
Found at i:78899151 original size:18 final size:17
Alignment explanation
Indices: 78899121--78899154 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
78899111 CTGATTATCT
78899121 AATTAAATTTTAAATAA
1 AATTAAATTTTAAATAA
*
78899138 AATTTAATTATTAAATA
1 AATTAAATT-TTAAATA
78899155 TAATAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTAAATTTTAAATAA
Found at i:78900594 original size:39 final size:40
Alignment explanation
Indices: 78900549--78900629 Score: 130
Period size: 39 Copynumber: 2.0 Consensus size: 40
78900539 TATTTAACAC
*
78900549 AATAAAATATTTATTATATTTATTTGTA-T-TTTTTAATAT
1 AATAAAATATTTATTATATTTA-TGGTAGTGTTTTTAATAT
78900588 AATAAAATATTTATTATATTTATGGTAGTGTTTTTAATAT
1 AATAAAATATTTATTATATTTATGGTAGTGTTTTTAATAT
78900628 AA
1 AA
78900630 ATACTTTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
38 4 0.10
39 23 0.59
40 12 0.31
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (40 bp):
AATAAAATATTTATTATATTTATGGTAGTGTTTTTAATAT
Found at i:78901280 original size:20 final size:20
Alignment explanation
Indices: 78901255--78901294 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
78901245 AAATTTACTA
78901255 AAATAATATTACA-TATTTTT
1 AAATAA-ATTACATTATTTTT
*
78901275 AAATAAGTTACATTATTTTT
1 AAATAAATTACATTATTTTT
78901295 TTAACAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (20 bp):
AAATAAATTACATTATTTTT
Done.