Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 246 of 295
Found at i:79236497 original size:18 final size:18
Alignment explanation
Indices: 79236474--79236522 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
79236464 ATAAATTGTC
*
79236474 TTTTATTTTTTTACCTTT
1 TTTTATTTTTTTACCTTA
*
79236492 TTTTATTTTTTT-TCTTA
1 TTTTATTTTTTTACCTTA
79236509 TTTTATTTTGTTTA
1 TTTTATTTT-TTTA
79236523 TTTTTTCTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.12, C:0.06, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTTTACCTTA
Found at i:79236500 original size:17 final size:17
Alignment explanation
Indices: 79236474--79236517 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
79236464 ATAAATTGTC
*
79236474 TTTTATTTTTTTACCTTT
1 TTTTA-TTTTTTACCTTA
**
79236492 TTTTATTTTTTTTCTTA
1 TTTTATTTTTTACCTTA
79236509 TTTTATTTT
1 TTTTATTTT
79236518 GTTTATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.11, C:0.07, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTATTTTTTACCTTA
Found at i:79236501 original size:9 final size:9
Alignment explanation
Indices: 79236474--79236534 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
79236464 ATAAATTGTC
79236474 TTTTA-TTT
1 TTTTATTTT
*
79236482 TTTTACCTTT
1 TTTTA-TTTT
79236492 TTTTATTTT
1 TTTTATTTT
* *
79236501 TTTT-CTTA
1 TTTTATTTT
79236509 TTTTATTTT
1 TTTTATTTT
*
79236518 GTTTATTTT
1 TTTTATTTT
79236527 TTCTTATT
1 TT-TTATT
79236535 AACTTTAAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
8 11 0.26
9 18 0.43
10 13 0.31
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (9 bp):
TTTTATTTT
Found at i:79236582 original size:21 final size:22
Alignment explanation
Indices: 79236543--79236589 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
79236533 TTAACTTTAA
79236543 AAAATTTGTAATGTATATTTTT
1 AAAATTTGTAATGTATATTTTT
79236565 AAAATTT-TAAT-TATTATTTTT
1 AAAATTTGTAATGTA-TATTTTT
79236586 AAAA
1 AAAA
79236590 ATATTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 2 0.08
21 15 0.62
22 7 0.29
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
AAAATTTGTAATGTATATTTTT
Found at i:79236590 original size:22 final size:23
Alignment explanation
Indices: 79236542--79236591 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
79236532 ATTAACTTTA
79236542 AAAAATTTGTAATGTATATTTTT
1 AAAAATTTGTAATGTATATTTTT
79236565 -AAAATTT-TAAT-TATTATTTTT
1 AAAAATTTGTAATGTA-TATTTTT
79236586 AAAAAT
1 AAAAAT
79236592 ATTTTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 2 0.08
21 11 0.44
22 12 0.48
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (23 bp):
AAAAATTTGTAATGTATATTTTT
Found at i:79236689 original size:35 final size:34
Alignment explanation
Indices: 79236560--79236694 Score: 132
Period size: 35 Copynumber: 3.9 Consensus size: 34
79236550 GTAATGTATA
*
79236560 TTTTTAAAATTTTAATTATTATTTTTAAA--AAT
1 TTTTTAAAATTTTAAATATTATTTTTAAATTAAT
** * *
79236592 ATTTTTTTAATTTTAGATATATATTTGTGAAATTAA-
1 -TTTTTAAAATTTTAAATAT-TATTT-TTAAATTAAT
* *
79236628 TTTTTATATATTTTAAAAATGTATTTTTAAATTAAT
1 TTTTTA-AAATTTTAAATAT-TATTTTTAAATTAAT
79236664 TTTTTAAAATTTTAAATATTAATTTTTAAAT
1 TTTTTAAAATTTTAAATATT-ATTTTTAAAT
79236695 ATTAACCATA
Statistics
Matches: 81, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
33 15 0.19
34 6 0.07
35 38 0.47
36 20 0.25
37 2 0.02
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (34 bp):
TTTTTAAAATTTTAAATATTATTTTTAAATTAAT
Found at i:79236690 original size:14 final size:14
Alignment explanation
Indices: 79236673--79236699 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
79236663 TTTTTTAAAA
79236673 TTTTAAATATTAAT
1 TTTTAAATATTAAT
79236687 TTTTAAATATTAA
1 TTTTAAATATTAA
79236700 CCATATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTTAAATATTAAT
Found at i:79236706 original size:23 final size:23
Alignment explanation
Indices: 79236658--79236699 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
79236648 GTATTTTTAA
*
79236658 ATTAATTTTTTAAAATTTTAAAT
1 ATTAATTTTTTAAAATATTAAAT
79236681 ATTAA-TTTTT-AAATATTAA
1 ATTAATTTTTTAAAATATTAA
79236700 CCATATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 5 0.28
23 5 0.28
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTAATTTTTTAAAATATTAAAT
Found at i:79236964 original size:18 final size:18
Alignment explanation
Indices: 79236941--79236988 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
79236931 CTTTTTTAGG
*
79236941 TTTTATATTATTTCCTTA
1 TTTTATATTATTTACTTA
* *
79236959 TTTTATTTTATTTATTTA
1 TTTTATATTATTTACTTA
*
79236977 ATTTATATTATT
1 TTTTATATTATT
79236989 AATTTTAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTATATTATTTACTTA
Found at i:79237132 original size:36 final size:35
Alignment explanation
Indices: 79237030--79237138 Score: 111
Period size: 36 Copynumber: 3.2 Consensus size: 35
79237020 ATATTTTACA
79237030 ATTTTTTA-AAATTTTAATTAT-TA-TTTTAGAATT
1 ATTTTTTATAAATTTTAATTATATATTTTTA-AATT
* * *
79237063 ATTTTTT-T-AACTTTAGTTATATATTTGTGAAATT
1 ATTTTTTATAAATTTTAATTATATATTT-TTAAATT
*
79237097 ATTTTTTATAAATTTTAAATATATATTTTTCAAATT
1 ATTTTTTATAAATTTTAATTATATATTTTT-AAATT
*
79237133 AGTTTT
1 ATTTTT
79237139 GAAATTATTA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
32 10 0.16
33 9 0.15
34 13 0.21
35 4 0.07
36 25 0.41
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.60
Consensus pattern (35 bp):
ATTTTTTATAAATTTTAATTATATATTTTTAAATT
Found at i:79237378 original size:21 final size:23
Alignment explanation
Indices: 79237354--79237399 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 23
79237344 TTTAAATATT
79237354 ATTTTTAGAT-TAT-TTTTTAAA
1 ATTTTTAGATATATATTTTTAAA
*
79237375 A-TTTTAGATATATATTTTTGAA
1 ATTTTTAGATATATATTTTTAAA
79237397 ATT
1 ATT
79237400 ATTTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 8 0.38
21 4 0.19
22 8 0.38
23 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (23 bp):
ATTTTTAGATATATATTTTTAAA
Found at i:79237381 original size:20 final size:22
Alignment explanation
Indices: 79237356--79237399 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
79237346 TAAATATTAT
79237356 TTTTAGAT-TAT-TTTTTAAAA
1 TTTTAGATATATATTTTTAAAA
*
79237376 TTTTAGATATATATTTTTGAAA
1 TTTTAGATATATATTTTTAAAA
79237398 TT
1 TT
79237400 ATTTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.38
21 3 0.14
22 10 0.48
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (22 bp):
TTTTAGATATATATTTTTAAAA
Found at i:79237413 original size:36 final size:34
Alignment explanation
Indices: 79237331--79237466 Score: 165
Period size: 33 Copynumber: 4.0 Consensus size: 34
79237321 CTATAATATA
*
79237331 TATTTTTTAAAATTTTAAATAT-TATTTTTAGAT
1 TATTTTTTAAAATTTTAAATATATATTTTTAAAT
*
79237364 TATTTTTTAAAATTTTAGATATATATTTTTGAAAT
1 TATTTTTTAAAATTTTAAATATATATTTTT-AAAT
*
79237399 TATTTTTTATAAATTTTAAATGTATATTTTTTAAAT
1 TATTTTTTA-AAATTTTAAATATATA-TTTTTAAAT
79237435 TAATTTTTT---ATTTTAAATAT-TATTTTTTAAAT
1 T-ATTTTTTAAAATTTTAAATATATA-TTTTTAAAT
79237467 ATTAACCATA
Statistics
Matches: 93, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
32 12 0.13
33 31 0.33
34 7 0.08
35 12 0.13
36 19 0.20
37 12 0.13
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (34 bp):
TATTTTTTAAAATTTTAAATATATATTTTTAAAT
Found at i:79237415 original size:22 final size:22
Alignment explanation
Indices: 79237390--79237435 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
79237380 AGATATATAT
79237390 TTTTGAAAT-TAT-TTTTTATAAA
1 TTTT-AAATGTATATTTTT-TAAA
79237412 TTTTAAATGTATATTTTTTAAA
1 TTTTAAATGTATATTTTTTAAA
79237434 TT
1 TT
79237436 AATTTTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.18
22 13 0.59
23 5 0.23
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (22 bp):
TTTTAAATGTATATTTTTTAAA
Found at i:79237440 original size:13 final size:15
Alignment explanation
Indices: 79237412--79237444 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
79237402 TTTTTATAAA
79237412 TTTTAAATGTATATT
1 TTTTAAATGTATATT
79237427 TTTTAAAT-TA-ATT
1 TTTTAAATGTATATT
79237440 TTTTA
1 TTTTA
79237445 TTTTAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 8 0.44
14 2 0.11
15 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTTAAATGTATATT
Found at i:79237448 original size:69 final size:65
Alignment explanation
Indices: 79237331--79237466 Score: 166
Period size: 69 Copynumber: 2.0 Consensus size: 65
79237321 CTATAATATA
* *
79237331 TATTTTTTAAAATTTTAAATATTATTTTTAGATTATTTTTTAAAATTTTAGATATATATTTTTGA
1 TATTTTTTAAAATTTTAAATATTATTTTTAAATTATTTTTT--AATTTTAAATAT-TATTTTTGA
79237396 AAT
63 AAT
* *
79237399 TATTTTTTATAAATTTTAAATGTATATTTTTTAAATTAATTTTTT-ATTTTAAATATTATTTTTT
1 TATTTTTTA-AAATTTTAAATAT-TA-TTTTTAAATT-ATTTTTTAATTTTAAATATTATTTTTG
79237463 AAAT
62 AAAT
79237467 ATTAACCATA
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
68 20 0.33
69 22 0.37
70 2 0.03
71 9 0.15
72 7 0.12
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (65 bp):
TATTTTTTAAAATTTTAAATATTATTTTTAAATTATTTTTTAATTTTAAATATTATTTTTGAAAT
Found at i:79237450 original size:18 final size:19
Alignment explanation
Indices: 79237427--79237463 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
79237417 AATGTATATT
79237427 TTTTAAAT-TAATTTTTTA
1 TTTTAAATATAATTTTTTA
*
79237445 TTTTAAATATTATTTTTTA
1 TTTTAAATATAATTTTTTA
79237464 AATATTAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
TTTTAAATATAATTTTTTA
Found at i:79237462 original size:14 final size:14
Alignment explanation
Indices: 79237412--79237470 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
79237402 TTTTTATAAA
*
79237412 TTTTAAATGTATATT
1 TTTTAAATAT-TATT
*
79237427 TTTTAAATTAATTTTTT
1 TTTTAAA-T-A-TTATT
79237444 ATTTTAAATATTATT
1 -TTTTAAATATTATT
79237459 TTTTAAATATTA
1 TTTTAAATATTA
79237471 ACCATACTCT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
14 12 0.32
15 11 0.30
16 2 0.05
17 4 0.11
18 8 0.22
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
TTTTAAATATTATT
Found at i:79240841 original size:30 final size:29
Alignment explanation
Indices: 79240807--79240909 Score: 107
Period size: 30 Copynumber: 3.4 Consensus size: 29
79240797 GATTGCTCTA
* * *
79240807 GGTGAAATGGACTCGAACCGCCTATATCCG
1 GGTGATATGAACTCGAACC-CCTATGTCCG
* *
79240837 GGTGATATGAACTTGAACCACTCATGTCCG
1 GGTGATATGAACTCGAACCCCT-ATGTCCG
* *
79240867 GGTTATATGAACTCAAACCACCTATGTCCG
1 GGTGATATGAACTCGAACC-CCTATGTCCG
*
79240897 GGTTATATGAACT
1 GGTGATATGAACT
79240910 GCTCTGGGAC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
29 2 0.03
30 58 0.94
31 2 0.03
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.26
Consensus pattern (29 bp):
GGTGATATGAACTCGAACCCCTATGTCCG
Found at i:79247029 original size:19 final size:18
Alignment explanation
Indices: 79247000--79247036 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
79246990 ATTTTAAGTT
79247000 ATTGAATTTTTAAAATTA
1 ATTGAATTTTTAAAATTA
*
79247018 ATTGATATTTTTATAATTA
1 ATTGA-ATTTTTAAAATTA
79247037 GAGTTATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (18 bp):
ATTGAATTTTTAAAATTA
Found at i:79251331 original size:25 final size:25
Alignment explanation
Indices: 79251274--79251342 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
79251264 AAATAATTCT
*
79251274 ATTTTAAAATATTAAAATTTAATAA
1 ATTTTTAAATATTAAAATTTAATAA
*** * *
79251299 AAAATTAAATATTAATATTTAATAC
1 ATTTTTAAATATTAAAATTTAATAA
*
79251324 ATTTTTAATATATTTAAAT
1 ATTTTTAA-ATATTAAAAT
79251343 CTCATAATTT
Statistics
Matches: 32, Mismatches: 11, Indels: 1
0.73 0.25 0.02
Matches are distributed among these distances:
25 24 0.75
26 8 0.25
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (25 bp):
ATTTTTAAATATTAAAATTTAATAA
Found at i:79253819 original size:47 final size:45
Alignment explanation
Indices: 79253619--79253885 Score: 182
Period size: 47 Copynumber: 5.7 Consensus size: 45
79253609 TGGGATATAC
* * *
79253619 TGCCAATGCCATGTCCCAGACATGATCTTACACTAGCTCTCATATACGTA
1 TGCCGATG-CATGTCCCAGACATG-TCTTACACTAGCTCTC-TCT--GGA
* * * **
79253669 TGCTGATGCATGTCCCAGACATGTCTTACACTAGCACAACT-TTTA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC-TCTCTGGA
* * * * * *
79253714 -GCCGATGCGTGTCCTAGACACGTCTTACAATGGCTATCTCTGTCGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTG--GA
* *
79253760 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCCCTCGTCTGGA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCTGGA
* * *
79253806 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTAAT-G-
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC-T-CTGGA
* * *
79253853 TGGCCGAAGCATGTCCCAAACATTTCTTACACT
1 T-GCCGATGCATGTCCCAGACATGTCTTACACT
79253886 GGCACACAAA
Statistics
Matches: 177, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.01
44 29 0.16
45 2 0.01
46 19 0.11
47 60 0.34
48 42 0.24
49 17 0.10
50 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.28
Consensus pattern (45 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTGGA
Found at i:79258033 original size:8 final size:8
Alignment explanation
Indices: 79258013--79258043 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
79258003 AAAATAGAAT
79258013 AAATAAT-
1 AAATAATA
79258020 AAATAATA
1 AAATAATA
79258028 AAATAATA
1 AAATAATA
79258036 AAATAATA
1 AAATAATA
79258044 GGATAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (8 bp):
AAATAATA
Found at i:79263627 original size:174 final size:174
Alignment explanation
Indices: 79263316--79263629 Score: 425
Period size: 174 Copynumber: 1.8 Consensus size: 174
79263306 GGGTTACCAG
* * * *
79263316 AGTCCAACTATAGCCTTACACCTTATATTCCCCGTGTTTATTGTCCTGGTGGACTACTAGGATAC
1 AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCTGATAGACTACTAGGATAC
* * * * *
79263381 CATAACATCTTCCAACTATGGTTTTAGTCCTCTCTATCATGATTCCATGGCATCTTTTAGCCATG
66 CATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCATG
79263446 ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTAGGTTGTCAT
131 ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTAGGTTGTCAT
* * **
79263490 AGTCCAACTATAGTCTTACACCGTATATTTCTTGTGTTTACTGT-CTCGATAGACTACTAGGATA
1 AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCT-GATAGACTACTAGGATA
*** * * *
79263554 CCATAGTGTCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACTCCATAGCTTCTTTCAGCCAT
65 CCATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCAT
79263619 -AGTCTTACTCA
130 GA-TCTTACTCA
79263630 TTTCAGTCAT
Statistics
Matches: 119, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
173 3 0.03
174 116 0.97
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.37
Consensus pattern (174 bp):
AGTCCAACTATAGCCTTACACCGTATATTCCCCGTGTTTACTGTCCTGATAGACTACTAGGATAC
CATAACATCTTCCAACTATGGTCTTAGTCCTCTCTACCATGACTCCATAGCATCTTTCAGCCATG
ATCTTACTCAATTTAGTTATAGTCCTGTCCACCTAGGTTGTCAT
Found at i:79263672 original size:90 final size:91
Alignment explanation
Indices: 79263562--79263757 Score: 254
Period size: 90 Copynumber: 2.2 Consensus size: 91
79263552 TACCATAGTG
* * * * * * *
79263562 TCTTTCAACTATGGTCTTAGTCCTGTCTACCATGACT-CCAT-AGCTTCTTTCAGCCATAGTC-T
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCAT-AATGCCATGAG-GTATTTCAGCCACAGTCTT
79263624 TACTCATTTCAGTCATGATGCCATAGCA
64 TACTCATTTCAGTCATGATGCCATAGCA
*
79263652 TCTTTTAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
1 TCTTTCAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
* * *
79263717 CTCATTTTAGTCATGATGTCATATCA
66 CTCATTTCAGTCATGATGCCATAGCA
79263743 TCTTTCAGCTATGGT
1 TCTTTCAGCTATGGT
79263758 CTTACTCATT
Statistics
Matches: 91, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.02
90 47 0.52
91 42 0.46
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (91 bp):
TCTTTCAGCTATGGTATTAGTCCTATCTACCATAATGCCATGAGGTATTTCAGCCACAGTCTTTA
CTCATTTCAGTCATGATGCCATAGCA
Found at i:79263770 original size:45 final size:44
Alignment explanation
Indices: 79263607--79263770 Score: 123
Period size: 45 Copynumber: 3.6 Consensus size: 44
79263597 CTCCATAGCT
*
79263607 TCTTTCAGCCATAGTCTTACTCATTTCAGTCATGATGCCATAGCA
1 TCTTTCAGCCATAGTCTTACTCATTTTAGTCATGATGCCATA-CA
* * * * * * * * * **
79263652 TCTTTTAGCTATGGTATTAGTCCTATCTA-CCATAATGCCATGAGG
1 TCTTTCAGCCATAGTCTTACTCAT-TTTAGTCATGATGCCAT-ACA
* * *
79263697 TATTTCAGCCACAGTCTTTACTCATTTTAGTCATGATGTCATATCA
1 TCTTTCAGCCATAGTC-TTACTCATTTTAGTCATGATGCCATA-CA
* *
79263743 TCTTTCAGCTATGGTCTTACTCATTTTA
1 TCTTTCAGCCATAGTCTTACTCATTTTA
79263771 TAGCTTATAG
Statistics
Matches: 84, Mismatches: 30, Indels: 10
0.68 0.24 0.08
Matches are distributed among these distances:
45 54 0.64
46 30 0.36
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.40
Consensus pattern (44 bp):
TCTTTCAGCCATAGTCTTACTCATTTTAGTCATGATGCCATACA
Found at i:79268174 original size:21 final size:21
Alignment explanation
Indices: 79268150--79268193 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
79268140 CACTCCCATA
*
79268150 TGGAGTCCACACATGCCCGTG
1 TGGAGGCCACACATGCCCGTG
**
79268171 TGGAGGGGACACATGCCCGTG
1 TGGAGGCCACACATGCCCGTG
79268192 TG
1 TG
79268194 AGTAGCTCGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (21 bp):
TGGAGGCCACACATGCCCGTG
Found at i:79288291 original size:18 final size:18
Alignment explanation
Indices: 79288268--79288304 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
79288258 TTTAAAGGTG
79288268 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
79288286 TATGGTAAGTATATTTTC
1 TATGGTAAGTATATTTTC
79288304 T
1 T
79288305 GACTATGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.16, T:0.51
Consensus pattern (18 bp):
TATGGTAAGTATATTTTC
Found at i:79292542 original size:70 final size:69
Alignment explanation
Indices: 79292427--79292726 Score: 307
Period size: 70 Copynumber: 4.3 Consensus size: 69
79292417 AGAAGTGTGG
* * * * *
79292427 GCTCATGCTAATTGTTTTGGAGGCTGTGGTATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
1 GCTCGTGCTAACTATTTTGG-GGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
79292492 CTTGA
65 CTTGA
* * ** * * *
79292497 GCTCGTGCTAACTATTTTGGGCGATGCGATATTAAACCTATTAGCCTTAAACTTACAATTGGGAA
1 GCTCGTGCTAACTATTTTGGG-GCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAG
*
79292562 CTTAA
65 CTTGA
* ** * * * *
79292567 GCTTGCACTAACTATTTCGGGGCTGCGATATTGAACTTGCTATCCTTAAAATTATAGTTGGGAGC
1 GCTCGTGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAGC
79292632 TTGA
66 TTGA
* * * *
79292636 GCTCATGCTAACTAATTTGGGGGCTGCGCTATTGAA-CTGGCTAGCCTTAAAATTACAGTTGGAA
1 GCTCGTGCTAACT-ATTTTGGGGCTGCGATATTGAACCT-GCTAGCCTTAAAATTACAGTTGGGA
79292700 GCTTGA
64 GCTTGA
* *
79292706 GTTTAG-GCTAACTATTTTGGG
1 G-CTCGTGCTAACTATTTTGGG
79292727 AGGGAATATA
Statistics
Matches: 184, Mismatches: 42, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
69 55 0.30
70 128 0.70
71 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (69 bp):
GCTCGTGCTAACTATTTTGGGGCTGCGATATTGAACCTGCTAGCCTTAAAATTACAGTTGGGAGC
TTGA
Found at i:79304102 original size:46 final size:46
Alignment explanation
Indices: 79303957--79304125 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
79303947 GTGTGAGCTT
* *
79303957 GTGTAAGACATGTCTGGGACATGCATCGGCCAC-A-TTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-A-AGCCA
* * * *
79304003 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACGAGT--GCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA-TA-TAAGCCA
79304051 G-GTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
* *
79304096 GTGTAAGACGTATCTGGGACATGCATCGGC
1 GTGTAAGACATGTCTGGGACATGCATCGGC
79304126 TATGACATGT
Statistics
Matches: 102, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 17 0.17
46 48 0.47
47 20 0.20
48 12 0.12
49 1 0.01
51 1 0.01
52 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATAAGCCA
Found at i:79304168 original size:46 final size:44
Alignment explanation
Indices: 79303957--79304171 Score: 152
Period size: 46 Copynumber: 4.7 Consensus size: 44
79303947 GTGTGAGCTT
* * * * *
79303957 GTGTAAGACATGTCTGGGACATGCATCGGCCA-CATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTATGA-CAT--GTGCTA
79304003 GTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGA-GTGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-T--GAC-ATGTGCTA
* ** *
79304051 G-GTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATATAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGG-CT--ATGACATGTGCTA
* * *
79304096 GTGTAAGACGTATCTGGGACATGCATCGGCTATGACATGTGTTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTA
*
79304140 GTGTAAGACCATGTCTGGGATATGGCATCGGC
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC
79304172 ACCTTACCCC
Statistics
Matches: 135, Mismatches: 18, Indels: 32
0.73 0.10 0.17
Matches are distributed among these distances:
43 1 0.01
44 15 0.11
45 26 0.19
46 56 0.41
47 21 0.16
48 13 0.10
49 1 0.01
51 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCTATGACATGTGCTA
Found at i:79304339 original size:13 final size:13
Alignment explanation
Indices: 79304321--79304346 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79304311 TGTGAGCTCA
79304321 ATATATGCTATAT
1 ATATATGCTATAT
79304334 ATATATGCTATAT
1 ATATATGCTATAT
79304347 GTATTGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
ATATATGCTATAT
Found at i:79305330 original size:20 final size:21
Alignment explanation
Indices: 79305292--79305330 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
79305282 TTAAAATGGT
79305292 CACACAAGCGTGTTGCCCTTC
1 CACACAAGCGTGTTGCCCTTC
*
79305313 CACACAGGCGTG-TGCCCT
1 CACACAAGCGTGTTGCCCT
79305331 GTTTCAAAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (21 bp):
CACACAAGCGTGTTGCCCTTC
Found at i:79310520 original size:23 final size:24
Alignment explanation
Indices: 79310477--79310522 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
79310467 TTTGTGACAT
*
79310477 TGAAACAACGATTTTTGACACCAC
1 TGAAACAACGATTGTTGACACCAC
79310501 TGAAA-AACGAGTTGTT-ACACCA
1 TGAAACAACGA-TTGTTGACACCA
79310523 TGCCTCTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.55
24 9 0.45
ACGTcount: A:0.39, C:0.22, G:0.15, T:0.24
Consensus pattern (24 bp):
TGAAACAACGATTGTTGACACCAC
Found at i:79310960 original size:20 final size:21
Alignment explanation
Indices: 79310935--79310982 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
79310925 ATATTATCAT
*
79310935 TATTCATG-ATTTGACT-CCAC
1 TATTCATGTACTTGA-TGCCAC
79310955 TATTCATGTACTTGATGCCAC
1 TATTCATGTACTTGATGCCAC
79310976 TATTCAT
1 TATTCAT
79310983 AGGACTGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (21 bp):
TATTCATGTACTTGATGCCAC
Found at i:79312929 original size:16 final size:16
Alignment explanation
Indices: 79312908--79312939 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
79312898 GTTTGCTCTT
79312908 TGATCTAATGTAAAGG
1 TGATCTAATGTAAAGG
79312924 TGATCTAATGTAAAGG
1 TGATCTAATGTAAAGG
79312940 AATTAATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.25, T:0.31
Consensus pattern (16 bp):
TGATCTAATGTAAAGG
Found at i:79316018 original size:4 final size:4
Alignment explanation
Indices: 79316009--79316063 Score: 64
Period size: 4 Copynumber: 14.5 Consensus size: 4
79315999 ATAGAAAGGT
*
79316009 AATA AATA AATA AATA AAT- AAT- AAT- AATA AAGGA AA-A AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA-TA AATA AATA AATA
79316054 AATA AATA AA
1 AATA AATA AA
79316064 GATGCACAAT
Statistics
Matches: 47, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
3 12 0.26
4 32 0.68
5 3 0.06
ACGTcount: A:0.75, C:0.00, G:0.04, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:79317703 original size:89 final size:88
Alignment explanation
Indices: 79317548--79318261 Score: 500
Period size: 89 Copynumber: 8.0 Consensus size: 88
79317538 GGAATTGCTG
* * * * * * * * *
79317548 CTTCAATCTGCCCCACTACAACTTCAGGGAGATAAGGTTTATAGCTGTAATCTACTCTACTCCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTGCAA
*
79317613 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * *
79317637 CTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTAGCTATAATCTGCTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTGCAA
* *
79317702 CTTCAGGGAGATGAA-ACTCG-TAT
65 CTTCAGGGAGAT-AAGATTTGCTAT
* * * * * * **
79317725 CTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCACTTTAGCCTGCTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGT-ACTTTAATCTGCTCCACTGCAA
* * * *
79317790 CTCCAGGGAGATAAGGTTT-ATAG
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * ** * * * * * *
79317813 CTTTAATCTGCTCTACTGCAATTTCAAAGAAACAAGATTTGTTATTTTCAATCTGCACCACCGTA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TACTTT-AATCTGCTCCACTGCA
*
79317878 ACTTCAGGGAGATAGGATTTGCTAT
64 ACTTCAGGGAGATAAGATTTGCTAT
** * * * * * ** * *
79317903 CTTCAATCTGTTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTAATCTACTACAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTA-CTTTAATCTGCTCCACTGCAA
*
79317968 CTTCAGAGAGATAAGATTTGCTAT
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * * * *
79317992 CTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAAACTTGTAATTTCAACCTGTTCCACTGCAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTT-AATCTGCTCCACTGCAA
* * * *
79318057 CTTTAGGGAGATAAGGTTT-ATAG
65 CTTCAGGGAGATAAGATTTGCTAT
* * * * ** *
79318080 CTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATT-TGTA-CTTTAATCTGCTCCACTGCA
* * * *
79318145 ACTTCAAGAAGATAAGATTTGTGGTTTGTAG
64 ACTTCAGGGAGATAAGA-TT-T-G---CTAT
* * * * *
79318176 CTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGCA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTG-TA-CTTTAATCTGCTCCACTGCA
*
79318241 ACTTCAAGGAGATAAGATTTG
64 ACTTCAGGGAGATAAGATTTG
79318262 TAACTTGTAG
Statistics
Matches: 486, Mismatches: 120, Indels: 34
0.76 0.19 0.05
Matches are distributed among these distances:
87 2 0.00
88 140 0.29
89 220 0.45
90 42 0.09
91 1 0.00
93 1 0.00
94 1 0.00
95 2 0.00
96 77 0.16
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (88 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGTACTTTAATCTGCTCCACTGCAAC
TTCAGGGAGATAAGATTTGCTAT
Found at i:79318095 original size:133 final size:134
Alignment explanation
Indices: 79317566--79318159 Score: 522
Period size: 133 Copynumber: 4.5 Consensus size: 134
79317556 TGCCCCACTA
* * * * * * * * *
79317566 CAACTTCAGGGAGATAAGGTTT-ATAGCTGT-AATCTACTCTACTCCAACTTCAGAGAGATAAGA
1 CAACTTCAGAGAGATAAGATTTGCTATCT-TCAATCTGCTCCACTGCAACTTCAGGGAGATAAAA
* * ** * * * * ** * * *
79317629 TTTGCTATCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTAGCTATAATCTGCTC
65 CTTGCTATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTC
*
79317694 CACTG
130 TACTG
* * * * * * * *
79317699 CAACTTCAGGGAGATGAA-ACTCG-TATCTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGA
1 CAACTTCAGAGAGAT-AAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAA
* * * ** *
79317762 -TTAG-TCA-CTTTAGCCTGCTCCACTGCAACTCCAGGGAGATAAGGTTTATAGCTTTAATCTGC
65 CTT-GCT-ATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTAC
79317824 TCTACTG
128 TCTACTG
* * * * * * * * * ** *
79317831 CAATTTCAAAGAAACAAGATTTGTTATTTTCAATCTGCACCACCGTAACTTCAGGGAGATAGGAT
1 CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAAC
* * * *
79317896 TTGCTATCTTCAATCTGTTCCACTGCAACTTTAGAGAGATAAGGTTTATAGCTTTAATTTAATCT
66 TTGCTATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTCT
*
79317961 ACTA
131 ACTG
* **
79317965 CAACTTCAGAGAGATAAGATTTGCTATCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAAAC
1 CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAAC
79318030 TTG-TAAT-TTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTC
66 TTGCT-ATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTC
79318093 TACTG
130 TACTG
* ** * *
79318098 CAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAA
1 CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
79318160 GATTTGTGGT
Statistics
Matches: 372, Mismatches: 78, Indels: 22
0.79 0.17 0.05
Matches are distributed among these distances:
131 2 0.01
132 66 0.18
133 193 0.52
134 111 0.30
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (134 bp):
CAACTTCAGAGAGATAAGATTTGCTATCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAAAC
TTGCTATCTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATAGCTTTAATCTACTCT
ACTG
Found at i:79318196 original size:96 final size:96
Alignment explanation
Indices: 79318071--79318329 Score: 365
Period size: 96 Copynumber: 2.7 Consensus size: 96
79318061 AGGGAGATAA
* * * * *
79318071 GGTTTATAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
79318136 TCCACTGCAACTTCAAGAAGATAAGATTTGT
66 TCCACTGCAACTTCAAGAAGATAAGATTTGT
**
79318167 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
*
79318232 TCCACTGCAACTTCAAGGAGATAAGATTTGT
66 TCCACTGCAACTTCAAGAAGATAAGATTTGT
*** * * * * * *
79318263 AACTTGTAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCATTATCTTCAATCTGC
1 GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
79318328 TC
66 TC
79318330 TATTGTAAGT
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
96 145 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (96 bp):
GGTTTGTAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTAACTATCTTCAATCTGC
TCCACTGCAACTTCAAGAAGATAAGATTTGT
Found at i:79318211 original size:51 final size:49
Alignment explanation
Indices: 79318129--79318310 Score: 167
Period size: 51 Copynumber: 3.7 Consensus size: 49
79318119 AACTATCTTC
* *
79318129 AATCTGCTCCACTGCAACTTCA-AGAAGATAAGATTTGTGGTTTGTAGCTTT
1 AATCTGTTCCACTGCAACTTCAGGGAA-ATAAGATTTGT-G-TTGTAGCTTT
* * * * *
79318180 AATCTATTCCACTGCAACTTTAGGGAAATAAGA-TT-TG--CTATCTTC
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAGCTTT
* * * *
79318225 AATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGT--GTTGTAGCTTT
* *
79318276 AATCTGTTCCACTGCAACCTCAGGGAAATGAGATT
1 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATT
79318311 CATTATCTTC
Statistics
Matches: 103, Mismatches: 21, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
45 33 0.32
46 2 0.02
47 1 0.01
48 1 0.01
49 1 0.01
50 2 0.02
51 60 0.58
52 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (49 bp):
AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTGTTGTAGCTTT
Found at i:79318354 original size:96 final size:96
Alignment explanation
Indices: 79318077--79318402 Score: 326
Period size: 96 Copynumber: 3.5 Consensus size: 96
79318067 ATAAGGTTTA
* * * * * * *
79318077 TAGCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
* * ***
79318142 GCAACTTCAAGAAGATAAGATTTGTGGTTTG
66 GCAACTTCAAGGAGAAAAGATTTGTAACTTG
* * **
79318173 TAGCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
*
79318238 GCAACTTCAAGGAGATAAGATTTGTAACTTG
66 GCAACTTCAAGGAGAAAAGATTTGTAACTTG
* * * * *
79318269 TAGCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCATTATCTTCAATCTGCTCTATT
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
* * *
79318334 GTAAGTT-TAGAGAGAAAAGATTTG-----TG
66 GCAACTTCAAG-GAGAAAAGATTTGTAACTTG
* * * *
79318360 -A-CTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCAC
1 TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCAC
79318403 CATGATAACT
Statistics
Matches: 200, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
89 36 0.18
90 1 0.00
91 2 0.01
95 2 0.01
96 159 0.80
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (96 bp):
TAGCTTTAATCTATTCCACTGCAACCTCAGGGAAATAAGATTCACTATCTTCAATCTGCTCCACT
GCAACTTCAAGGAGAAAAGATTTGTAACTTG
Found at i:79318398 original size:44 final size:44
Alignment explanation
Indices: 79317547--79318681 Score: 566
Period size: 44 Copynumber: 24.9 Consensus size: 44
79317537 AGGAATTGCT
* * * * *
79317547 GCTTCAATCTGCCCCACTACAACTTCAGGGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * *
79317591 GCTGTAATCTACTCTACTCCAACTTCAGAGAGATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * *
79317636 TCTTCAATCTACTCCATTGTAACTTCAGGGAGATTAGACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * *
79317680 GCTATAATCTGCTCCACTGCAACTTCAGGGAGATGAA-ACTCGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGAT-AAGATTTGTA
* * * * * * *
79317724 TCTTCAATTTGCTCCACTGTAATTTTAGGGAGATAAGATTAGTCA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGT-A
** * * *
79317769 -CTTTAGCCTGCTCCACTGCAACTCCAGGGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * ** * *
79317812 GCTTTAATCTGCTCTACTGCAATTTCAAAGAAACAAGATTTGTTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * *
79317857 -TTTTCAATCTGCACCACCGTAACTTCAGGGAGATAGGATTTGCTA
1 GCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * * * * *
79317902 TCTTCAATCTGTTCCACTGCAACTTTAGAGAGATAAGGTTTATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* ** * * *
79317946 GCTTTAATTTAATCTACTACAACTTCAGAGAGATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * * ** * *
79317991 TCTTCAGTCTATTCCACTGCAACTTCAGGGAGATAAAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * * *
79318035 -ATTTCAACCTGTTCCACTGCAACTTTAGGGAGATAAGGTTTATA
1 GCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
* * * * **
79318079 GCTTTAATCTACTCTACTGCAACTTTAGAGAGATAAGATTAACTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-TGTA
* * * *
79318124 TCTTCAATCTGCTCCACTGCAACTTCAAGAAGATAAGATTTGTGGTTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-------TTTGTA
** * *
79318175 GCTTTAATCTATTCCACTGCAACTTTAGGGAAATAAGATTTGCTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-TA
* * *
79318220 TCTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATTTGTAACTTGTA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA----T---TTGTA
* * * *
79318271 GCTTTAATCTGTTCCACTGCAACCTCAGGGAAATGAGATTCAT-TA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT--TGTA
* * * * * * * * *
79318316 TCTTCAATCTGCTCTATTGTAAGTTTAGAGAGAAAAGATTTGT-
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
** *
79318359 GACTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCACCATGATA
1 G-CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* ** * * * * *
79318410 ACTTCGATCCG-TCCCACTGTAACTTTAGGG-GTATAGGATTTGTG
1 GCTTTAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* *
79318454 GCTTTAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCCATGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-----TG-TA
* ** * * *
79318504 ACTTCGATCTG-TCTCACTGTAACTTCAGGG-GTATAGGATTTGTG
1 GCTTTAATCTGCTC-CACTGCAACTTCAGGGAG-ATAAGATTTGTA
79318548 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATA
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T---T-TG-TA
* ** * * * *
79318598 ACTTCGATCTG-TCCCACTACAACTTCAGGG-GTATATGATTTATG
1 GCTTTAATCTGCT-CCACTGCAACTTCAGGGAG-ATAAGATTTGTA
* * * *
79318642 GCTTTAATATGCTCCATTGCAACTTTAAGGAGATAAGATT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
79318682 CACCATGGTA
Statistics
Matches: 806, Mismatches: 223, Indels: 124
0.70 0.19 0.11
Matches are distributed among these distances:
43 6 0.01
44 382 0.47
45 238 0.30
46 4 0.00
47 1 0.00
48 1 0.00
49 14 0.02
50 90 0.11
51 65 0.08
52 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (44 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTA
Found at i:79318459 original size:94 final size:94
Alignment explanation
Indices: 79318352--79318741 Score: 564
Period size: 94 Copynumber: 4.1 Consensus size: 94
79318342 AGAGAGAAAA
* ** *
79318352 GATTTGTGACTTTAATCTTTTCCACTACAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
*
79318417 TCCGTCCCACTGTAACTTTAGGGGTATAG
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
* * *
79318446 GATTTGTGGCTTTAATCTGCTCCACTGTAACTTCAGGGAAATAAGATTCGCCATGATAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* *
79318511 TCTGTCTCACTGTAACTTCAGGGGTATAG
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
* *
79318540 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATGATAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* ** *
79318605 TCTGTCCCACTACAACTTCAGGGGTATAT
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
* * * * * *
79318634 GATTTATGGCTTTAATATGCTCCATTGCAACTTTAAGGAGATAAGATTCACCATGGTAACTTCGA
1 GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
* *
79318699 TTCGTCCCACTGTAACTTCAGAGGTATAG
66 TCCGTCCCACTGTAACTTCAGGGGTATAG
79318728 GATTTGTGGCTTTA
1 GATTTGTGGCTTTA
79318742 CTGATCTGTT
Statistics
Matches: 264, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 264 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (94 bp):
GATTTGTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACCATGATAACTTCGA
TCCGTCCCACTGTAACTTCAGGGGTATAG
Found at i:79327519 original size:31 final size:28
Alignment explanation
Indices: 79327452--79327520 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 28
79327442 ATGCATGAAA
* * *
79327452 ACCAAATTGAACATGAAATAATTCAGGT
1 ACCAAATTGAACATGAAACAACTCAAGT
*
79327480 CCCAAATTGAACATGAAAACCAACCTCAAGT
1 ACCAAATTGAACATG-AAA-CAA-CTCAAGT
79327511 ACCAAATTGA
1 ACCAAATTGA
79327521 GATAAAAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
28 14 0.42
29 3 0.09
30 2 0.06
31 14 0.42
ACGTcount: A:0.46, C:0.22, G:0.12, T:0.20
Consensus pattern (28 bp):
ACCAAATTGAACATGAAACAACTCAAGT
Found at i:79329619 original size:74 final size:73
Alignment explanation
Indices: 79329501--79329768 Score: 308
Period size: 74 Copynumber: 3.6 Consensus size: 73
79329491 GTTTTCCCCG
* * * *
79329501 AAATCCCTACGTTCTTTTCCCAAATCCCTTTCTTTCTTCCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAGCT-TTTTCCCAAATCCCTTCCTTT-TTTCCCAATTTCTTTTCCCCAAATCAATT
79329566 CCCCTCCCTA
64 CCCCTCCCTA
*
79329576 AAATCCCTAAG-TTTTTCCTCTAATCCCTTCCCTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
1 AAATCCCTAAGCTTTTTCC-CAAATCCCTT-CCTTTTTTCCCAATTTCTTTTCCCCAAATCAATT
* *
79329640 ACCCTCCCCA
64 CCCCTCCCTA
* * * * * *
79329650 TAATCCCTAAGCTTTTTGCCAAATCCCTTTCTTTTTTCCCAACTTCTTTTCCCCAAATCAGTTCT
1 AAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTCCCAATTTCTTTTCCCCAAATCAATTCC
* *
79329715 CCT-CTTCG
66 CCTCCCT-A
*
79329723 AAATCCCTAA-CTTTTTCCCCAAATCCCCTCCTTTTTTCCCCAATTT
1 AAATCCCTAAGCTTTTT-CCCAAATCCCTTCCTTTTTT-CCCAATTT
79329769 TTGTTGCATT
Statistics
Matches: 165, Mismatches: 22, Indels: 13
0.82 0.11 0.06
Matches are distributed among these distances:
72 7 0.04
73 66 0.40
74 72 0.44
75 20 0.12
ACGTcount: A:0.20, C:0.38, G:0.02, T:0.40
Consensus pattern (73 bp):
AAATCCCTAAGCTTTTTCCCAAATCCCTTCCTTTTTTCCCAATTTCTTTTCCCCAAATCAATTCC
CCTCCCTA
Found at i:79332878 original size:29 final size:29
Alignment explanation
Indices: 79332843--79332901 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
79332833 ACTTGTATTT
79332843 TGCATTATCAATCAAGTGATAGATAAGTA
1 TGCATTATCAATCAAGTGATAGATAAGTA
79332872 TGCATTATCAATCAAGTGATAGATAAGTA
1 TGCATTATCAATCAAGTGATAGATAAGTA
79332901 T
1 T
79332902 TAAGAGGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (29 bp):
TGCATTATCAATCAAGTGATAGATAAGTA
Found at i:79333686 original size:32 final size:33
Alignment explanation
Indices: 79333630--79333692 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
79333620 AATTGATTTT
79333630 TATATTTTTAATAACTTTTAAATTTAAAAAAAA
1 TATATTTTTAATAACTTTTAAATTTAAAAAAAA
* *
79333663 TATATTTTTAA-AATTTTTAAATTTTAAAAA
1 TATATTTTTAATAACTTTTAAATTTAAAAAA
79333693 TTAAATCATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (33 bp):
TATATTTTTAATAACTTTTAAATTTAAAAAAAA
Found at i:79336551 original size:50 final size:50
Alignment explanation
Indices: 79336476--79336652 Score: 246
Period size: 50 Copynumber: 3.5 Consensus size: 50
79336466 CCATGGAAAC
*
79336476 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATTA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
79336526 AAGTGATAAGTAATAACTTCGGCTACACTTATCTGATTAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* *
79336576 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * * *
79336626 CAACTGAAAAGTGGTAGCTTCAGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
79336653 CTGATCAGTG
Statistics
Matches: 111, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
50 89 0.80
51 22 0.20
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:79336838 original size:31 final size:31
Alignment explanation
Indices: 79336630--79336831 Score: 314
Period size: 31 Copynumber: 6.5 Consensus size: 31
79336620 AAATGACAAC
79336630 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
79336661 TGAAAAGTGGTAGTTTCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
79336692 TGAAAAGTGGTAGCTTCTGCTACCTAATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
79336723 TGAAAAGTGGTAGCTTCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* *
79336754 TGAAAAGTGGTAGCTCCGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
* **
79336785 TGAAAAATGGTAGCACCAGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
*
79336816 TGAATAGTGGTAGCTT
1 TGAAAAGTGGTAGCTT
79336832 TGGCTACAAG
Statistics
Matches: 157, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 157 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCAGCTACCTGATCAG
Found at i:79336849 original size:7 final size:7
Alignment explanation
Indices: 79336837--79336865 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
79336827 AGCTTTGGCT
79336837 ACAAGTG
1 ACAAGTG
79336844 ACAAGTG
1 ACAAGTG
79336851 ACAAGTG
1 ACAAGTG
79336858 ACAAGTG
1 ACAAGTG
79336865 A
1 A
79336866 TTTCTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.28, T:0.14
Consensus pattern (7 bp):
ACAAGTG
Found at i:79342664 original size:40 final size:40
Alignment explanation
Indices: 79342627--79342851 Score: 312
Period size: 40 Copynumber: 5.6 Consensus size: 40
79342617 GCTACTCGTT
*
79342627 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
79342667 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
79342707 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
79342747 CAAATGCCTTCGAGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * * * *
79342787 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
*
79342828 CAAA-GCCTTCGGGACTCAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
79342852 ACATCATTCA
Statistics
Matches: 166, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 150 0.90
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:79346287 original size:48 final size:48
Alignment explanation
Indices: 79346216--79346311 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
79346206 CGAACCATGC
*
79346216 ATGTTGTTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
1 ATGTTGCTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
* *
79346264 ATGTTGCTGCAGAAGATCATGCTGCTGTTTTGTTACTTTCAAATGGAT
1 ATGTTGCTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
79346312 GTTTTGTTAC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.41
Consensus pattern (48 bp):
ATGTTGCTACAGAAGATCATGCTGCTATTTTGTTACTTTCAAATGGAT
Found at i:79349776 original size:3 final size:3
Alignment explanation
Indices: 79349770--79349795 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
79349760 AATAATAATA
79349770 ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG AT
79349796 AATAGTATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.31, T:0.35
Consensus pattern (3 bp):
ATG
Found at i:79350048 original size:21 final size:20
Alignment explanation
Indices: 79350024--79350064 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
79350014 TAAAATTTCA
*
79350024 GAATTATAAAAGGATATAAAT
1 GAATAATAAAAGGATA-AAAT
*
79350045 GAATAATAAAATGATAAAAT
1 GAATAATAAAAGGATAAAAT
79350065 CGCATAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (20 bp):
GAATAATAAAAGGATAAAAT
Found at i:79350090 original size:11 final size:11
Alignment explanation
Indices: 79350074--79350098 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79350064 TCGCATAAAA
79350074 TAAATATTAGG
1 TAAATATTAGG
79350085 TAAATATTAGG
1 TAAATATTAGG
79350096 TAA
1 TAA
79350099 TTAAACACGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:79352120 original size:23 final size:23
Alignment explanation
Indices: 79352067--79352112 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
79352057 ATTTGGACTG
*
79352067 TTTTAATTTAGATCTTATTTGGT
1 TTTTATTTTAGATCTTATTTGGT
79352090 TTTTATTTTA-ATC-TATTTGGT
1 TTTTATTTTAGATCTTATTTGGT
79352111 TT
1 TT
79352113 ATTTATTTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.45
22 3 0.14
23 9 0.41
ACGTcount: A:0.20, C:0.04, G:0.11, T:0.65
Consensus pattern (23 bp):
TTTTATTTTAGATCTTATTTGGT
Found at i:79352121 original size:13 final size:13
Alignment explanation
Indices: 79352103--79352133 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
79352093 TATTTTAATC
*
79352103 TATTTGGTTTATT
1 TATTTGGCTTATT
79352116 TATTTGGCTTATT
1 TATTTGGCTTATT
79352129 TATTT
1 TATTT
79352134 ATTGTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68
Consensus pattern (13 bp):
TATTTGGCTTATT
Found at i:79353764 original size:42 final size:42
Alignment explanation
Indices: 79353712--79353795 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
79353702 TTGTAAGTTA
79353712 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
*
79353754 GAACACGATCTTTTTTTAACTCTTGAGAATATTTAAAATTTT
1 GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
79353796 TACTTTAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.44
Consensus pattern (42 bp):
GAACACGATCTTTTTTTAACTCTCGAGAATATTTAAAATTTT
Found at i:79354063 original size:27 final size:27
Alignment explanation
Indices: 79354032--79354084 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
79354022 ATATAAGATA
79354032 AAAAATAAACAAGCCAAAAA-TAAAAAAG
1 AAAAAT-AACAAG-CAAAAACTAAAAAAG
*
79354060 AAAAATAACAAGTAAAAACTAAAAA
1 AAAAATAACAAGCAAAAACTAAAAA
79354085 TTTGAAACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 12 0.52
28 6 0.26
ACGTcount: A:0.75, C:0.09, G:0.06, T:0.09
Consensus pattern (27 bp):
AAAAATAACAAGCAAAAACTAAAAAAG
Found at i:79354076 original size:13 final size:13
Alignment explanation
Indices: 79354032--79354082 Score: 50
Period size: 15 Copynumber: 3.7 Consensus size: 13
79354022 ATATAAGATA
79354032 AAAAATAAACAAG
1 AAAAATAAACAAG
*
79354045 CCAAAAATAAAAAAG
1 --AAAAATAAACAAG
79354060 AAAAAT-AACAAG
1 AAAAATAAACAAG
79354072 TAAAAACTAAA
1 -AAAAA-TAAA
79354083 AATTTGAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 5 0.16
13 11 0.35
14 1 0.03
15 14 0.45
ACGTcount: A:0.75, C:0.10, G:0.06, T:0.10
Consensus pattern (13 bp):
AAAAATAAACAAG
Found at i:79355328 original size:21 final size:21
Alignment explanation
Indices: 79355286--79355328 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
79355276 TTTCATAATT
*
79355286 ATAAAAGGATATAAATGAATA
1 ATAAAAGGATATAAATCAATA
79355307 ATAAAAGGATA-AAATCACATA
1 ATAAAAGGATATAAATCA-ATA
79355328 A
1 A
79355329 AATAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.63, C:0.05, G:0.12, T:0.21
Consensus pattern (21 bp):
ATAAAAGGATATAAATCAATA
Found at i:79355347 original size:11 final size:11
Alignment explanation
Indices: 79355331--79355355 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
79355321 TCACATAAAA
79355331 TAAATATTAGG
1 TAAATATTAGG
79355342 TAAATATTAGG
1 TAAATATTAGG
79355353 TAA
1 TAA
79355356 CTAAATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (11 bp):
TAAATATTAGG
Found at i:79367469 original size:26 final size:26
Alignment explanation
Indices: 79367433--79367485 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
79367423 GCAAGCTTCG
79367433 ATAGCCACTATAAAACACAAAAAAGT
1 ATAGCCACTATAAAACACAAAAAAGT
*
79367459 ATAGCCACTATAAAACACAGAAAAGT
1 ATAGCCACTATAAAACACAAAAAAGT
79367485 A
1 A
79367486 AATAGAGTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.19, G:0.09, T:0.15
Consensus pattern (26 bp):
ATAGCCACTATAAAACACAAAAAAGT
Found at i:79373788 original size:44 final size:46
Alignment explanation
Indices: 79373645--79373892 Score: 180
Period size: 48 Copynumber: 5.3 Consensus size: 46
79373635 TTCCAAACCT
* * *
79373645 GGTCTTACATTGGCTCACATATCTAAG-TCGATGCCATGTCCCAGACA
1 GGTCTTACACT-GATCACATATC-AAGACCGATGCCATGTCCCAGACA
* * *
79373692 GGTCTTACACTGACTTTCATATATCATGACTGATGCCATGTCCCAGACA
1 GGTCTTACACTGA---TCACATATCAAGACCGATGCCATGTCCCAGACA
* *
79373741 GGTCTTACACTGA-CACATGTCAAG-CCGATGCCATGTCCCAGATA
1 GGTCTTACACTGATCACATATCAAGACCGATGCCATGTCCCAGACA
* * * * * *
79373785 GGTCTTACACTAGCTTGCATATCTCGAGGCTGATG-CATGTCCCAGACA
1 GGTCTTACACT-G-AT-CACATATCAAGACCGATGCCATGTCCCAGACA
* * * * * * **
79373833 TGTCTTACACTAGCTCTCATCTTAATATTGATGCCATGTCCCAGACA
1 GGTCTTACACT-GATCACATATCAAGACCGATGCCATGTCCCAGACA
79373880 CGGTCTTACACTG
1 -GGTCTTACACTG
79373893 GCTCTCATAA
Statistics
Matches: 163, Mismatches: 27, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
44 29 0.18
45 9 0.06
46 12 0.07
47 25 0.15
48 44 0.27
49 44 0.27
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GGTCTTACACTGATCACATATCAAGACCGATGCCATGTCCCAGACA
Found at i:79373838 original size:48 final size:47
Alignment explanation
Indices: 79373674--79373940 Score: 217
Period size: 48 Copynumber: 5.7 Consensus size: 47
79373664 TATCTAAGTC
*
79373674 GATGCCATGTCCCAGACAGGTCTTACACT-GACTTTCATATATCATGACT
1 GATGCCATGTCCCAGACAGGTCTTACACTAG-C-TTCATATATCA-GGCT
* * * * *
79373723 GATGCCATGTCCCAGACAGGTCTTACACT-G--ACACATGTCAAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATATATCAGGCT
* *
79373767 GATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTCGAGGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCTT-CATATATC-AGGCT
* * * ***
79373816 GATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCT-TAATATT
1 GATGCCATGTCCCAGACAGGTCTTACACTAGCT-TCATATATCAGGCT
* ** *
79373862 GATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATA-ATGTGGCC
1 GATGCCATGTCCCAGACA-GGTCTTACACTAGCT-TCATATATCAGGCT
* * *
79373910 GATG-CACGTCCCAGACATGTATTACACTAGC
1 GATGCCATGTCCCAGACAGGTCTTACACTAGC
79373941 ACACATCCAT
Statistics
Matches: 177, Mismatches: 32, Indels: 21
0.77 0.14 0.09
Matches are distributed among these distances:
44 29 0.16
45 8 0.05
46 17 0.10
47 26 0.15
48 59 0.33
49 38 0.21
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACAGGTCTTACACTAGCTTCATATATCAGGCT
Found at i:79374632 original size:20 final size:20
Alignment explanation
Indices: 79374607--79374645 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
79374597 AAAATTTCAA
79374607 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
79374627 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
79374646 AATAGCCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:79378348 original size:18 final size:18
Alignment explanation
Indices: 79378312--79378356 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
79378302 CAATTGGGTG
79378312 TGTGGG-CCACACAAGCA
1 TGTGGGCCCACACAAGCA
* *
79378329 TGTGGGCCCAGACGAGCA
1 TGTGGGCCCACACAAGCA
*
79378347 TGTTGGCCCA
1 TGTGGGCCCA
79378357 TTATGCTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.16
Consensus pattern (18 bp):
TGTGGGCCCACACAAGCA
Found at i:79380399 original size:12 final size:12
Alignment explanation
Indices: 79380382--79380407 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79380372 TCATGAGCAT
79380382 TTTTATTTATCC
1 TTTTATTTATCC
79380394 TTTTATTTATCC
1 TTTTATTTATCC
79380406 TT
1 TT
79380408 CATTAACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (12 bp):
TTTTATTTATCC
Found at i:79388201 original size:222 final size:222
Alignment explanation
Indices: 79387805--79388235 Score: 781
Period size: 222 Copynumber: 1.9 Consensus size: 222
79387795 TAAAGACATG
* * *
79387805 TTAAATCCCTACAAATTTAATTTTATTCTCTTATTTAAGATTAAGCTGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
79387870 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
* * *
79387935 TCAATAGGTCTTTTAAATAGGTTGTAGCATGGCTAGGCTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
79388000 TAGGCTAAAAACCCAATTTTATTTTAT
196 TAGGCTAAAAACCCAATTTTATTTTAT
79388027 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
1 TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
* *
79388092 TTATGCCTTCATATGTTGAACATTGCAATTTCTCTCCACTAGTGTAGGTAGCACAAAAACTTGAA
66 TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
*
79388157 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGTTAGGGGTAGGTAAAAGATAGATAAATT
131 CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
79388222 TAGGCTAAAAACCC
196 TAGGCTAAAAACCC
79388236 TAGACTCAGC
Statistics
Matches: 200, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
222 200 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.35
Consensus pattern (222 bp):
TTAAATCCCTAAAAATTTAATTTTATTCCCTTATTTAAGATTAAGCCGCAATCATTAAGTTTAAT
TTATGCCTTCATATGTTGAACATTGCAATTCCTCTCAACTAGTGTAGGTAGCACAAAAACTTGAA
CCAATAGGTCTTTTAAATAGGTTGTAGCATGGCCAAGCTAGGGGTAGGTAAAAGATAGATAAATT
TAGGCTAAAAACCCAATTTTATTTTAT
Found at i:79390732 original size:30 final size:30
Alignment explanation
Indices: 79390697--79390754 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
79390687 TAGACACTTC
79390697 CACACGGGT-GATCCACACGCCCGTGTGTGA
1 CACACGGGTAGAT-CACACGCCCGTGTGTGA
* *
79390727 CACACGGGTAGATCACATGCCTGTGTGT
1 CACACGGGTAGATCACACGCCCGTGTGT
79390755 CATGGCCGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (30 bp):
CACACGGGTAGATCACACGCCCGTGTGTGA
Found at i:79392128 original size:34 final size:34
Alignment explanation
Indices: 79392085--79392153 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
79392075 AGAAGAAGGG
*
79392085 TACGAGGACGATATTCACACCACAACCGAGGAGA
1 TACGAGGACGATATTCACACCACAACCAAGGAGA
79392119 TACGAGGACGATATTCACACCACAACCAAGGAGA
1 TACGAGGACGATATTCACACCACAACCAAGGAGA
79392153 T
1 T
79392154 GGCTGAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (34 bp):
TACGAGGACGATATTCACACCACAACCAAGGAGA
Found at i:79393700 original size:37 final size:37
Alignment explanation
Indices: 79393642--79393712 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
79393632 GCTCAGACGA
* *
79393642 AATCTCCACATGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
*
79393679 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGAAGTCATCGGGTCTTACCCGGA
79393713 ATATATTTCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGAAGTCATCGGGTCTTACCCGGACAT
Found at i:79393906 original size:46 final size:46
Alignment explanation
Indices: 79393854--79393990 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
79393844 TATATATACG
* * * *
79393854 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79393900 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79393946 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
79393991 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:79394025 original size:47 final size:47
Alignment explanation
Indices: 79393964--79394061 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
79393954 ACACATTTCG
* *
79393964 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
* * *
79394011 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
79394058 CATT
1 CATT
79394062 TAATCCTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
Found at i:79397957 original size:40 final size:40
Alignment explanation
Indices: 79397923--79398273 Score: 524
Period size: 40 Copynumber: 8.8 Consensus size: 40
79397913 CCAGCATGAT
* * *
79397923 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
79397963 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79398003 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
79398043 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
79398083 TGCTCTTC-GGACTTAGCCCGGATATATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79398122 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * * *
79398162 TGCTCTTCAGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
79398202 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
79398242 TGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
79398274 CTCAATTCTC
Statistics
Matches: 281, Mismatches: 29, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 37 0.13
40 244 0.87
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:79398145 original size:159 final size:159
Alignment explanation
Indices: 79397910--79398273 Score: 566
Period size: 159 Copynumber: 2.3 Consensus size: 159
79397900 CGAATACACG
* * * * * *
79397910 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGG
1 TCACTAGCATGAATGCTCTTC-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGA
* *
79397975 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAC
65 CTTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCAC
*
79398040 GAATGCTCTTCGGGACTTAGTCCGGATACA
130 GAATGCTCTTCGGGACTTAGCCCGGATACA
*
79398070 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTCGGGAC
1 TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
* * *
79398135 TTAGCCCGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGTCCGGATACATCACTAGCATG
66 TTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACG
*
79398200 AATGCTCTTCGGGACTTAGCCCGGATATA
131 AATGCTCTTCGGGACTTAGCCCGGATACA
* *
79398229 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATATATCACT
1 TCACTAGCATGAATGCTCTTCGG-ACTTAGCCCGGATATATCACT
79398274 CTCAATTCTC
Statistics
Matches: 187, Mismatches: 16, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
159 148 0.79
160 39 0.21
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (159 bp):
TCACTAGCATGAATGCTCTTCGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGGAC
TTAGCACGGATATATCACTAGCACGAATGCTCTTCAGAACTTAGCCCGGATACATCACTAGCACG
AATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:79399811 original size:46 final size:46
Alignment explanation
Indices: 79399758--79399891 Score: 119
Period size: 46 Copynumber: 2.9 Consensus size: 46
79399748 ATATATACGC
* * * * *
79399758 ATCTCATACATATCTCACATTTGCCATTTGGCTTTACCTCATATCT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * *
79399804 ATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATATAT
1 ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
* * * *
79399850 A-CAT-GTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
1 ATC-TCATACACA-TC-TCACATTAGCCATTCGGCCTTACCACA
79399892 CATACGCATG
Statistics
Matches: 71, Mismatches: 14, Indels: 5
0.79 0.16 0.06
Matches are distributed among these distances:
45 6 0.08
46 41 0.58
47 24 0.34
ACGTcount: A:0.26, C:0.30, G:0.09, T:0.35
Consensus pattern (46 bp):
ATCTCATACACATCTCACATTAGCCATTCGGCCTTACCACATATCT
Found at i:79399882 original size:47 final size:47
Alignment explanation
Indices: 79399821--79399918 Score: 151
Period size: 47 Copynumber: 2.1 Consensus size: 47
79399811 ACACATTTCG
* *
79399821 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
* * *
79399868 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
79399915 CATT
1 CATT
79399919 TAATCCTAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.31, G:0.10, T:0.32
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTACCACACATACACATGTTCACATTCATCA
Found at i:79404902 original size:28 final size:28
Alignment explanation
Indices: 79404860--79404919 Score: 86
Period size: 28 Copynumber: 2.1 Consensus size: 28
79404850 ACCTAAACCG
*
79404860 ACCAATTCATCCATACCCTTTCGATT-AT
1 ACCAATTCATCCATACCATTTCG-TTCAT
*
79404888 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATCCATACCATTTCGTTCAT
79404916 ACCA
1 ACCA
79404920 CTCTTACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 27 0.93
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (28 bp):
ACCAATTCATCCATACCATTTCGTTCAT
Found at i:79404903 original size:14 final size:14
Alignment explanation
Indices: 79404860--79404919 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
79404850 ACCTAAACCG
*
79404860 ACCAATTCATCCAT
1 ACCAATTCATTCAT
**
79404874 ACCCTTTCGATT-AT
1 ACCAATTC-ATTCAT
79404888 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
79404902 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
79404916 ACCA
1 ACCA
79404920 CTCTTACCAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
13 3 0.08
14 32 0.86
15 2 0.05
ACGTcount: A:0.30, C:0.32, G:0.03, T:0.35
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:79405310 original size:11 final size:11
Alignment explanation
Indices: 79405281--79405310 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
79405271 AAAAGTATAT
79405281 AAAAAAAATTC
1 AAAAAAAATTC
*
79405292 GAAAAAAATTC
1 AAAAAAAATTC
79405303 AAAAAAAA
1 AAAAAAAA
79405311 GGGTGTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.77, C:0.07, G:0.03, T:0.13
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:79405878 original size:84 final size:84
Alignment explanation
Indices: 79405737--79405906 Score: 340
Period size: 84 Copynumber: 2.0 Consensus size: 84
79405727 AATCACAACA
79405737 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
1 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
79405802 CGATAAATGGAGCGACTCC
66 CGATAAATGGAGCGACTCC
79405821 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
1 TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
79405886 CGATAAATGGAGCGACTCC
66 CGATAAATGGAGCGACTCC
79405905 TA
1 TA
79405907 AATTGAAGGC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 86 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (84 bp):
TAGAATATCGTCCGGCAAGACAACCCATTCGCAACGTCCCCAACTTAAACATGCAAGCCTTATTA
CGATAAATGGAGCGACTCC
Found at i:79411960 original size:28 final size:28
Alignment explanation
Indices: 79411920--79411979 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
79411910 ACCTAAACCG
*
79411920 ACCAATTCATTCATACCCCTTCGATCAT
1 ACCAATTCATTCATACCACTTCGATCAT
* *
79411948 ACCAATTCATTCATACCATTTCGTTCAT
1 ACCAATTCATTCATACCACTTCGATCAT
79411976 ACCA
1 ACCA
79411980 CTCTTACCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (28 bp):
ACCAATTCATTCATACCACTTCGATCAT
Found at i:79411961 original size:14 final size:14
Alignment explanation
Indices: 79411920--79411979 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
79411910 ACCTAAACCG
79411920 ACCAATTCATTCAT
1 ACCAATTCATTCAT
**
79411934 ACCCCTTCGA-TCAT
1 ACCAATTC-ATTCAT
79411948 ACCAATTCATTCAT
1 ACCAATTCATTCAT
* *
79411962 ACCATTTCGTTCAT
1 ACCAATTCATTCAT
79411976 ACCA
1 ACCA
79411980 CTCTTACCAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
13 1 0.03
14 36 0.95
15 1 0.03
ACGTcount: A:0.30, C:0.33, G:0.03, T:0.33
Consensus pattern (14 bp):
ACCAATTCATTCAT
Found at i:79415161 original size:46 final size:46
Alignment explanation
Indices: 79415094--79415269 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
79415084 TGTAACCCGC
79415094 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * *
79415140 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* *** * * *
79415186 ACATCTCTCGAACTTGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
*
79415233 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
79415270 TGCCCAAATA
Statistics
Matches: 105, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
46 72 0.69
47 33 0.31
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:79415207 original size:93 final size:93
Alignment explanation
Indices: 79415102--79415273 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
79415092 GCCCATAAGT
*
79415102 GAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
79415167 CAAGCTCGGATGCCTAGTTACATCTCTC
66 CAAGCTCGGATGCCTAGTTACATCTCTC
* *
79415195 GAACTTGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
79415260 CGAGTTCGGATGCC
66 CAAGCTCGGATGCC
79415274 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGCTCGGATGCCTAGTTACATCTCTC
Found at i:79420760 original size:46 final size:44
Alignment explanation
Indices: 79420617--79420760 Score: 107
Period size: 46 Copynumber: 3.1 Consensus size: 44
79420607 CCCGCCCATA
* * *
79420617 AGTGAACTCGGACTCAACTCAACGAGCTCGTATGCCTAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---A-ATC-CT
* * *
79420666 --CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC--ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAATCC-T
79420709 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AA-ATCCT
79420756 AGTGA
1 AGTGA
79420761 TATGTCACTT
Statistics
Matches: 76, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
42 1 0.01
43 4 0.05
44 4 0.05
46 33 0.43
47 27 0.36
48 4 0.05
49 3 0.04
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATCCT
Found at i:79438083 original size:27 final size:27
Alignment explanation
Indices: 79438046--79438107 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
79438036 GAAAAAATTA
* *
79438046 TTATAAATTAATTA-AAATTAAATATT
1 TTATAATTTAAGTACAAATTAAATATT
* *
79438072 TTAATAATTTAAGTACAATTTAATTATT
1 TT-ATAATTTAAGTACAAATTAAATATT
79438100 TTATAATT
1 TTATAATT
79438108 ATATTATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
26 2 0.07
27 16 0.53
28 12 0.40
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (27 bp):
TTATAATTTAAGTACAAATTAAATATT
Found at i:79439105 original size:21 final size:18
Alignment explanation
Indices: 79439062--79439116 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
79439052 ATCTACTAGA
79439062 TAATAATATTAAATATTT
1 TAATAATATTAAATATTT
*
79439080 TAATAATATTAAATCTTAT
1 TAATAATATTAAATATT-T
*
79439099 TAA-AATAATAAAATATTT
1 TAATAAT-ATTAAATATTT
79439117 ATCTACTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 20 0.62
19 12 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
TAATAATATTAAATATTT
Found at i:79439217 original size:37 final size:36
Alignment explanation
Indices: 79439148--79439239 Score: 96
Period size: 37 Copynumber: 2.4 Consensus size: 36
79439138 TTAAATTTAA
*
79439148 TATTAAAATAATCACTTGAATATTAAATTAATA-AAATAC
1 TATTAAAATAAT-A-TTAAAT-TTAAATTAATATAAA-AC
* * *
79439187 TATTAAGATAAGTATTAAATTTAATTTAATATTAAAC
1 TATTAAAATAA-TATTAAATTTAAATTAATATAAAAC
79439224 TATTAAAATAATATTA
1 TATTAAAATAATATTA
79439240 TTGTTGGAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
36 5 0.11
37 22 0.48
38 7 0.15
39 11 0.24
40 1 0.02
ACGTcount: A:0.52, C:0.04, G:0.03, T:0.40
Consensus pattern (36 bp):
TATTAAAATAATATTAAATTTAAATTAATATAAAAC
Found at i:79441499 original size:34 final size:34
Alignment explanation
Indices: 79441461--79441529 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
79441451 TAGTTTACAA
79441461 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
1 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
79441495 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
1 GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
79441529 G
1 G
79441530 CTCACCAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (34 bp):
GTTCATGCCTAAGCATTTAAATTTCTAACAGTGT
Found at i:79448761 original size:11 final size:11
Alignment explanation
Indices: 79448745--79448788 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
79448735 TTATATGGCA
79448745 AATAGCATGGT
1 AATAGCATGGT
*
79448756 AATAGCATTAGT
1 AATAGCA-TGGT
79448768 -ATGAGCATGGT
1 AAT-AGCATGGT
79448779 AATAGCATGG
1 AATAGCATGG
79448789 GGCGTTCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 19 0.68
12 9 0.32
ACGTcount: A:0.36, C:0.09, G:0.27, T:0.27
Consensus pattern (11 bp):
AATAGCATGGT
Found at i:79448883 original size:20 final size:20
Alignment explanation
Indices: 79448858--79448897 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
79448848 AATAATTAGT
79448858 AGAAAAATGA-AAATAATATG
1 AGAAAAATGAGAAA-AATATG
79448878 AGAAAAATGAGAAAAATATG
1 AGAAAAATGAGAAAAATATG
79448898 TATCAAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.65, C:0.00, G:0.17, T:0.17
Consensus pattern (20 bp):
AGAAAAATGAGAAAAATATG
Found at i:79449120 original size:19 final size:19
Alignment explanation
Indices: 79449096--79449133 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
79449086 GAAGGGGTAG
*
79449096 GAGAAAGAGAAGAGGAAGA
1 GAGAAAGAAAAGAGGAAGA
79449115 GAGAAAGAAAAGAGGAAGA
1 GAGAAAGAAAAGAGGAAGA
79449134 AAAGGTAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (19 bp):
GAGAAAGAAAAGAGGAAGA
Found at i:79450258 original size:20 final size:20
Alignment explanation
Indices: 79450233--79450275 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
79450223 AAAGAAGGTT
*
79450233 GTACCACATTATCAGTATTA
1 GTACCACATGATCAGTATTA
79450253 GTACCACATGATCAGTATTA
1 GTACCACATGATCAGTATTA
79450273 GTA
1 GTA
79450276 GTATGATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.33
Consensus pattern (20 bp):
GTACCACATGATCAGTATTA
Found at i:79455755 original size:29 final size:29
Alignment explanation
Indices: 79455701--79455763 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
79455691 ATACTTTTAT
* ** *
79455701 AAAATGTCTAATGTGGTATTTTTACTCTG
1 AAAATGTCCAATGTGGTACATGTACTCTG
*
79455730 AAAATGTCCAATGTGGTACATGTACTTTG
1 AAAATGTCCAATGTGGTACATGTACTCTG
79455759 AAAAT
1 AAAAT
79455764 CCTTATTGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.38
Consensus pattern (29 bp):
AAAATGTCCAATGTGGTACATGTACTCTG
Found at i:79455942 original size:17 final size:16
Alignment explanation
Indices: 79455919--79455966 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
79455909 ACATTTTGTA
79455919 AAAAAAAAACTAAATT
1 AAAAAAAAACTAAATT
**
79455935 AAACAAAAAGTTAAATT
1 AAA-AAAAAACTAAATT
79455952 AAAATAAAAAC-AAAT
1 AAAA-AAAAACTAAAT
79455967 AACTAAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 8 0.31
17 18 0.69
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAAAAAAACTAAATT
Found at i:79456759 original size:63 final size:62
Alignment explanation
Indices: 79456672--79456791 Score: 204
Period size: 63 Copynumber: 1.9 Consensus size: 62
79456662 ACAGTATTAG
*
79456672 CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAGGCTTATCAA
1 CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTTATCAA
* *
79456734 CACAACCCAAAAATCTAGGCTAATAAATTGTCATTAACTCAAATATGGACACAAGCTT
1 CACAACCC-AAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTT
79456792 TTTCGTCACA
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
62 8 0.15
63 46 0.85
ACGTcount: A:0.43, C:0.23, G:0.11, T:0.23
Consensus pattern (62 bp):
CACAACCCAAAATCTAGGCCAATAAATTGTCAATAACTCAAATATGGACACAAGCTTATCAA
Found at i:79459502 original size:20 final size:22
Alignment explanation
Indices: 79459470--79459535 Score: 68
Period size: 20 Copynumber: 3.2 Consensus size: 22
79459460 AAATATTTCA
**
79459470 ATAAATAAAAAATAAAAATA-T
1 ATAAATATTAAATAAAAATAGT
*
79459491 A-AAATATTAAATTAAAATAGT
1 ATAAATATTAAATAAAAATAGT
*
79459512 ATAAATATT-TA-AAAAATAGT
1 ATAAATATTAAATAAAAATAGT
79459532 ATAA
1 ATAA
79459536 TTGGTTTGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
20 27 0.71
21 4 0.11
22 7 0.18
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (22 bp):
ATAAATATTAAATAAAAATAGT
Found at i:79464108 original size:23 final size:23
Alignment explanation
Indices: 79464081--79464128 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
79464071 AGTACTAAAC
79464081 CTATTGGTCTAAATGACTCAAAA
1 CTATTGGTCTAAATGACTCAAAA
79464104 CTATTGGTCTAAATGACTCAAAA
1 CTATTGGTCTAAATGACTCAAAA
79464127 CT
1 CT
79464129 TAATACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (23 bp):
CTATTGGTCTAAATGACTCAAAA
Found at i:79465366 original size:54 final size:54
Alignment explanation
Indices: 79465284--79465400 Score: 173
Period size: 54 Copynumber: 2.2 Consensus size: 54
79465274 AAATATGGGT
* *
79465284 TGGTAATCCCGCCATTACTCAGTGAGCTTATGTTATAAGGGATTTAGCCTAGAC
1 TGGTAATCCCGACATTACTCAGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
**
79465338 TGGTAATCCCGACATTACTCTA-TGAGCTTATGTTATGGGGGATTTAGACTAGAC
1 TGGTAATCCCGACATTACTC-AGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
*
79465392 TAGTAATCC
1 TGGTAATCC
79465401 TGCCGTAAGA
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 56 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.22, T:0.32
Consensus pattern (54 bp):
TGGTAATCCCGACATTACTCAGTGAGCTTATGTTATAAGGGATTTAGACTAGAC
Found at i:79466693 original size:20 final size:20
Alignment explanation
Indices: 79466668--79466705 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
79466658 GACAGGGGCA
79466668 TGTCCCAAAGCACACGGGTG
1 TGTCCCAAAGCACACGGGTG
79466688 TGTCCCAAAGCACACGGG
1 TGTCCCAAAGCACACGGG
79466706 CTTGTACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.32, G:0.29, T:0.13
Consensus pattern (20 bp):
TGTCCCAAAGCACACGGGTG
Found at i:79468075 original size:15 final size:15
Alignment explanation
Indices: 79468043--79468071 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
79468033 ATTTTTTGTG
79468043 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
79468058 TTTATTA-GTGTGAA
1 TTTATTATGTGTGAA
79468072 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:79473952 original size:31 final size:31
Alignment explanation
Indices: 79473910--79473972 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
79473900 CTTTTCATAC
79473910 TTCATAATTCATAACACTGGGCCGAAGCCTT
1 TTCATAATTCATAACACTGGGCCGAAGCCTT
* **
79473941 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATAATTCATAACACTGGGCCGAAGCCTT
79473972 T
1 T
79473973 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (31 bp):
TTCATAATTCATAACACTGGGCCGAAGCCTT
Found at i:79474292 original size:23 final size:24
Alignment explanation
Indices: 79474184--79474307 Score: 205
Period size: 24 Copynumber: 5.2 Consensus size: 24
79474174 GGCCTAACCT
*
79474184 CTTTTAATAACTGGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
79474208 CTTTTAATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
79474232 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
79474256 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
79474280 C-TTTAATAACTGGGCCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
79474303 CTTTT
1 CTTTT
79474308 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 21 0.22
24 74 0.78
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:79474379 original size:9 final size:9
Alignment explanation
Indices: 79474365--79474421 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
79474355 ATCTCATGTG
79474365 CATATCATA
1 CATATCATA
*
79474374 CATATCATGTG
1 CATATCA--TA
79474385 CATATCATA
1 CATATCATA
* *
79474394 CATGTCATGTG
1 CATATCA--TA
79474405 CATATCATA
1 CATATCATA
79474414 CATATCAT
1 CATATCAT
79474422 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:79474381 original size:20 final size:20
Alignment explanation
Indices: 79474353--79474423 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
79474343 GCATTTATGA
*
79474353 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79474373 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
79474393 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
79474413 ACATATCATGT
1 ACATATCATGT
79474424 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:79474388 original size:11 final size:11
Alignment explanation
Indices: 79474358--79474412 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
79474348 TATGAACATC
79474358 TCATGTGCATA
1 TCATGTGCATA
*
79474369 TCA--TACATA
1 TCATGTGCATA
79474378 TCATGTGCATA
1 TCATGTGCATA
* *
79474389 TCA--TACATG
1 TCATGTGCATA
79474398 TCATGTGCATA
1 TCATGTGCATA
79474409 TCAT
1 TCAT
79474413 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:79477177 original size:57 final size:57
Alignment explanation
Indices: 79477040--79477196 Score: 192
Period size: 57 Copynumber: 2.8 Consensus size: 57
79477030 ATCATATAAC
* * ** *
79477040 AGGATTACCAGTTCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
* * *
79477097 AGGATTACCAGCCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
**
79477154 AGGATTACCAGTCCAGGAAAAAT-CTTAAT-TGTAACATATGCTC
1 AGGATTACCAGTCCAGGCTAAATCCTT--TCTGTAACATATGCTC
79477197 GAGAGGGATT
Statistics
Matches: 86, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
56 3 0.03
57 82 0.95
58 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.27
Consensus pattern (57 bp):
AGGATTACCAGTCCAGGCTAAATCCTTTCTGTAACATATGCTCACAAGAGCTCAATT
Found at i:79477245 original size:58 final size:57
Alignment explanation
Indices: 79477040--79477245 Score: 182
Period size: 57 Copynumber: 3.6 Consensus size: 57
79477030 ATCATATAAC
* * ** * * *
79477040 AGGATTACCAGTTCAGGCTAAATCCTATCTCCAACATATGCTCACAAGAGCTTAATT
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
** * * *
79477097 AGGATTACCAGCCCAAGCTAAATCCTTTCTGTAACATATGCTCAGAAGAGCTCAATT
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
* ** * * *
79477154 AGGATTACCAGTCCAGGAAAAATCTTAAT-TGTAACATATGCTC-GAGAGGGATTATATT
1 AGGATTACCAATCCAGGCTAAATCCT-ATCTGTAACATATGCTCAGA-AGAGATCA-ATT
***
79477212 AGGATTACCAATTTGGGCTAAATCCTATCTGTAA
1 AGGATTACCAATCCAGGCTAAATCCTATCTGTAA
79477246 TGATGTCAAT
Statistics
Matches: 121, Mismatches: 24, Indels: 7
0.80 0.16 0.05
Matches are distributed among these distances:
56 2 0.02
57 91 0.75
58 28 0.23
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (57 bp):
AGGATTACCAATCCAGGCTAAATCCTATCTGTAACATATGCTCAGAAGAGATCAATT
Found at i:79477418 original size:8 final size:8
Alignment explanation
Indices: 79477405--79477430 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
79477395 TCTCATATAT
79477405 TTATGCAA
1 TTATGCAA
79477413 TTATGCAA
1 TTATGCAA
79477421 TTATGCAA
1 TTATGCAA
79477429 TT
1 TT
79477431 CAAATGTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.42
Consensus pattern (8 bp):
TTATGCAA
Found at i:79483130 original size:18 final size:18
Alignment explanation
Indices: 79483109--79483152 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
79483099 GCATATAATG
79483109 CTTAGTAAGTCTGTATAA
1 CTTAGTAAGTCTGTATAA
79483127 CTTAGTAAGTCTGTATAA
1 CTTAGTAAGTCTGTATAA
*
79483145 CTTGGTAA
1 CTTAGTAA
79483153 TTAACTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (18 bp):
CTTAGTAAGTCTGTATAA
Found at i:79483338 original size:141 final size:141
Alignment explanation
Indices: 79483158--79483441 Score: 550
Period size: 141 Copynumber: 2.0 Consensus size: 141
79483148 GGTAATTAAC
79483158 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
1 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
79483223 ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
66 ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
79483288 GCCCAACAATA
131 GCCCAACAATA
79483299 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
1 TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
* *
79483364 ACATATATTCTCATCACCCTTGTTAGTAACTTATTTTATATAAACATCAAGAAACACATATATGA
66 ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
79483429 GCCCAACAATA
131 GCCCAACAATA
79483440 TT
1 TT
79483442 CGGATTCTCA
Statistics
Matches: 141, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (141 bp):
TTACCAACTATTCATATTAAAGATAAACATGTAAATCAGAATCAACCATTTGATCCCAAGCCCTA
ACACATATTCTCATCACCCTTGTTAGTAACTGATTTTATATAAACATCAAGAAACACATATATGA
GCCCAACAATA
Found at i:79501589 original size:32 final size:32
Alignment explanation
Indices: 79501553--79501617 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
79501543 CCTTTTCATA
79501553 TTTCATAT-TCCATAACACTGGGCCGAAGCCTT
1 TTTCATATCT-CATAACACTGGGCCGAAGCCTT
** *
79501585 TTTCATATCTCATATTACTGGGCTGAAGCCTT
1 TTTCATATCTCATAACACTGGGCCGAAGCCTT
79501617 T
1 T
79501618 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.15, T:0.37
Consensus pattern (32 bp):
TTTCATATCTCATAACACTGGGCCGAAGCCTT
Found at i:79501960 original size:20 final size:20
Alignment explanation
Indices: 79501935--79502001 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
79501925 TTATGAATAC
79501935 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
79501955 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
79501975 GTCATGTGCATATCGTATCA-
1 ATCATGTGCATATCATA-CAT
79501995 ATCATGT
1 ATCATGT
79502002 ATATCAAAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
20 41 0.95
21 2 0.05
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:79501966 original size:11 final size:11
Alignment explanation
Indices: 79501935--79501988 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
79501925 TTATGAATAC
79501935 ATCATGTGCAT
1 ATCATGTGCAT
*
79501946 ATCA--TACAT
1 ATCATGTGCAT
79501955 ATCATGTGCAT
1 ATCATGTGCAT
*
79501966 ATCA--TACAT
1 ATCATGTGCAT
*
79501975 GTCATGTGCAT
1 ATCATGTGCAT
79501986 ATC
1 ATC
79501989 GTATCAATCA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
9 15 0.45
11 18 0.55
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:79509571 original size:32 final size:32
Alignment explanation
Indices: 79509535--79509599 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
79509525 CCTTTTCATA
79509535 TTTCATAT-TCCATAACACTGGGCCGAAGCCTT
1 TTTCATATCT-CATAACACTGGGCCGAAGCCTT
**
79509567 TTTCATATCTCATATTACTGGGCCGAAGCCTT
1 TTTCATATCTCATAACACTGGGCCGAAGCCTT
79509599 T
1 T
79509600 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 29 0.97
33 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.15, T:0.35
Consensus pattern (32 bp):
TTTCATATCTCATAACACTGGGCCGAAGCCTT
Found at i:79511119 original size:27 final size:27
Alignment explanation
Indices: 79510748--79511237 Score: 596
Period size: 27 Copynumber: 18.2 Consensus size: 27
79510738 AAAGTACTCC
79510748 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
79510775 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
79510802 CGATTTTTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
79510829 CAATTTACA-AATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
79510855 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
79510882 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
79510909 C-AGTTTATAGAATTACCATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
79510936 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
79510963 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
79510990 CAATTTACAGAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
79511017 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
79511044 CGATTTACAGAATTATCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
79511071 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
79511098 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * *
79511125 CGATTTGTAAAATTACTGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* * *
79511152 TGATTTACAGAATTACTGGTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
79511179 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
79511206 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
79511233 TGATT
1 CGATT
79511238 GTGAAATTAC
Statistics
Matches: 401, Mismatches: 51, Indels: 22
0.85 0.11 0.05
Matches are distributed among these distances:
25 1 0.00
26 26 0.06
27 369 0.92
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:79511272 original size:27 final size:27
Alignment explanation
Indices: 79511242--79511392 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
79511232 TTGATTGTGA
* *
79511242 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
79511269 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
79511296 AATTACTAAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
* ** *
79511323 AAGTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
79511350 AA-AAATCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* *
79511377 AATTACCGAGATACCC
1 AATTACTGAAATACCC
79511393 TTGTGGGGTA
Statistics
Matches: 101, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 99 0.98
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Done.