Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 249 of 295
Found at i:80116666 original size:3 final size:3
Alignment explanation
Indices: 80116660--80117018 Score: 129
Period size: 3 Copynumber: 119.3 Consensus size: 3
80116650 AATATAGTAG
* * * *
80116660 TAA TAA TAA TAC T-A TAG TAA TAA TGA TAA TAA -AA -AA TTAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
** * * *
80116703 TAA TAA TAA -AA TAA TAA -AA T-A TAA TGG TGA CAG TAA TTAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
* * * * * * *
80116745 AAA TAT TAA TAG TGA TAA -AA TAA GGTGA TAA TAA TAA T-A TAT TGA
1 TAA TAA TAA TAA TAA TAA TAA TAA --TAA TAA TAA TAA TAA TAA TAA
* * * ** * *
80116790 TAA TAA CTAA TAA -AA GGAA TAA AAA TAA TAG TAA CGA TAA GAA TAT
1 TAA TAA -TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
80116836 TAA TAA TAA CAA TAA T-A TAAA TAA TAA TATA TACA TGAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A T-AA TAA TAA TAA
* * * * *
80116884 TAA TAA TAA T-A TAAA GAA TAGG GAA TAA TAA T-A TAC TAA TAA GAA
1 TAA TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* ** *
80116929 TAA TAA TAGGT TAA TAA TAA TAGGA GGA -AA TAA TAA TAA T-A TAT TAA
1 TAA TAA TA--A TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA
** *
80116976 TAA GGA TACA -AA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
80117019 GTTAAAATGG
Statistics
Matches: 257, Mismatches: 68, Indels: 62
0.66 0.18 0.16
Matches are distributed among these distances:
2 29 0.11
3 201 0.78
4 21 0.08
5 6 0.02
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:80116677 original size:20 final size:20
Alignment explanation
Indices: 80116650--80116711 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
80116640 TATAGATGAA
80116650 AATATAGTAGTAATAATAAT
1 AATATAGTAGTAATAATAAT
* * *
80116670 ACTATAGTAATAATGATAAT
1 AATATAGTAGTAATAATAAT
* * *
80116690 AAAAAATTAGTAATAATAAT
1 AATATAGTAGTAATAATAAT
80116710 AA
1 AA
80116712 AATAATAAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (20 bp):
AATATAGTAGTAATAATAAT
Found at i:80118504 original size:88 final size:88
Alignment explanation
Indices: 80118439--80118965 Score: 813
Period size: 88 Copynumber: 6.0 Consensus size: 88
80118429 CTTCAAGCAA
* * *
80118439 CTCCAATGCCATTTCAGGGAGAAGAAATTTGTAGCTTCGATCTACTCCACTAGAGCTTCAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* *
80118504 ATACGAATTATGGCTTTGAGCCT
66 ATACGAATTGTGGCTTCGAGCCT
* * * *
80118527 CTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAACTTTAAGGAT
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
*
80118592 ATACGAATTGTGGCTTTGAGCCT
66 ATACGAATTGTGGCTTCGAGCCT
* *
80118615 CT-CAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTTAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
*
80118679 ATACGAATTGTGGCTTCGAACCT
66 ATACGAATTGTGGCTTCGAGCCT
* * * *
80118702 CTCCAGTGCCATTTCATGGAGAAGAGATTTGTAGCTTCGATCTACTACGCTGGAACTTCAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
*
80118767 ATACGAATTTTGGCTTCGAGCCT
66 ATACGAATTGTGGCTTCGAGCCT
* **
80118790 CTTCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTGCTGGAACTTCAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
80118855 ATACGAATTGTGGCTTCGAGCCT
66 ATACGAATTGTGGCTTCGAGCCT
* *
80118878 CTCCAATGCCATTTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAA
1 CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
* * *
80118943 ATACGAATTATGGTTTCCAGCCT
66 ATACGAATTGTGGCTTCGAGCCT
80118966 GTTACCTTAC
Statistics
Matches: 406, Mismatches: 32, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
87 83 0.20
88 323 0.80
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.29
Consensus pattern (88 bp):
CTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAG
ATACGAATTGTGGCTTCGAGCCT
Found at i:80118862 original size:263 final size:264
Alignment explanation
Indices: 80118439--80118951 Score: 848
Period size: 263 Copynumber: 1.9 Consensus size: 264
80118429 CTTCAAGCAA
* *
80118439 CTCCAATGCCATTTCAGGGAGAAGAAATTTGTAGCTTCGATCTACTCCACTAGAGCTTCAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAAATTTGTAGCTTCGATCTACTACACTAGAACTTCAAGGAG
* *
80118504 ATACGAATTATGGCTTTGAGCCTCTCCAGTGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATC
66 ATACGAATTATGGCTTCGAGCCTCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATC
* * * * *
80118569 TACTCCGCTGGAACTTTAAGGATATACGAATTGTGGCTTTGAGCCTCT-CAGTGCCATTTCAGGG
131 TACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCTCTCCAATGCCATTTCAAGG
* *
80118633 AGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTTAAGGAGATACGAATTGTGGCTTCGA
196 AGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAAATACGAATTGTGGCTTCGA
80118698 ACCT
261 ACCT
* * * * *
80118702 CTCCAGTGCCATTTCATGGAGAAGAGATTTGTAGCTTCGATCTACTACGCTGGAACTTCAAGGAG
1 CTCCAATGCCATTTCAGGGAGAAGAAATTTGTAGCTTCGATCTACTACACTAGAACTTCAAGGAG
* *
80118767 ATACGAATTTTGGCTTCGAGCCTCTTCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATC
66 ATACGAATTATGGCTTCGAGCCTCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATC
*
80118832 TACTCTGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCTCTCCAATGCCATTTCAAGG
131 TACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCTCTCCAATGCCATTTCAAGG
80118897 AGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAAATACGAATT
196 AGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAAATACGAATT
80118952 ATGGTTTCCA
Statistics
Matches: 230, Mismatches: 19, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
263 163 0.71
264 67 0.29
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (264 bp):
CTCCAATGCCATTTCAGGGAGAAGAAATTTGTAGCTTCGATCTACTACACTAGAACTTCAAGGAG
ATACGAATTATGGCTTCGAGCCTCTCCAATGCCATTTCAGGGAGAAGAGATTTGTAGCTTCGATC
TACTCCGCTGGAACTTCAAGGAGATACGAATTGTGGCTTCGAGCCTCTCCAATGCCATTTCAAGG
AGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAACTTCAAGGAAATACGAATTGTGGCTTCGA
ACCT
Found at i:80118938 original size:44 final size:43
Alignment explanation
Indices: 80118451--80118941 Score: 277
Period size: 44 Copynumber: 11.2 Consensus size: 43
80118441 CCAATGCCAT
* * *
80118451 TTCAGGGAGAAGAAATTTGTAGCTTCGATCTACTCCACTAGAGC
1 TTCAAGGAGAAG-AATTTGTAGCTTCGATCTACTCCACTGGAAC
* * * ** *
80118495 TTCAAGGAGATACGAATTATG--GCTTTGAGCCT-CTCCAGTGCCAT
1 TTCAAGGAGA-A-GAATT-TGTAGCTTCGA-TCTACTCCACTGGAAC
* *
80118539 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCGCTGGAAC
1 TTCAAGGAGAAGA-ATTTGTAGCTTCGATCTACTCCACTGGAAC
* * * * * * ** *
80118583 TTTAAGGATATACGAA-TTGTGGCTTTGAGC--CTCTCAGTGCCAT
1 TTCAAGGAGA-A-GAATTTGTAGCTTCGATCTACTC-CACTGGAAC
*
80118626 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAAC
1 TTCAAGGAGAAGA-ATTTGTAGCTTCGATCTACTCCACTGGAAC
* * * * ** *
80118670 TTTAAGGAGATACGAA-TTGTGGCTTCGAACCT-CTCCAGTGCCAT
1 TTCAAGGAGA-A-GAATTTGTAGCTTCG-ATCTACTCCACTGGAAC
* * *
80118714 TTCATGGAGAAGAGATTTGTAGCTTCGATCTACTACGCTGGAAC
1 TTCAAGGAGAAGA-ATTTGTAGCTTCGATCTACTCCACTGGAAC
* * * * ** *
80118758 TTCAAGGAGATACGAATTT-TGGCTTCGAGCCT-CTTCAATGCCAT
1 TTCAAGGAGA-A-GAATTTGTAGCTTCGA-TCTACTCCACTGGAAC
* **
80118802 TTCAGGGAGAAGAGATTTGTAGCTTCGATCTACTCTGCTGGAAC
1 TTCAAGGAGAAGA-ATTTGTAGCTTCGATCTACTCCACTGGAAC
* * * ** *
80118846 TTCAAGGAGATACGAA-TTGTGGCTTCGAGCCT-CTCCAATGCCAT
1 TTCAAGGAGA-A-GAATTTGTAGCTTCGA-TCTACTCCACTGGAAC
80118890 TTCAAGGAGAAGAGATTTGTAGCTTCGATCTACTCCACTGGAAC
1 TTCAAGGAGAAGA-ATTTGTAGCTTCGATCTACTCCACTGGAAC
80118934 TTCAAGGA
1 TTCAAGGA
80118942 AATACGAATT
Statistics
Matches: 324, Mismatches: 90, Indels: 66
0.68 0.19 0.14
Matches are distributed among these distances:
41 2 0.01
42 15 0.05
43 44 0.14
44 224 0.69
45 28 0.09
46 11 0.03
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (43 bp):
TTCAAGGAGAAGAATTTGTAGCTTCGATCTACTCCACTGGAAC
Found at i:80130601 original size:17 final size:19
Alignment explanation
Indices: 80130576--80130612 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
80130566 AGTGATGATG
*
80130576 ATAATAATA-TGAAA-AAT
1 ATAACAATATTGAAATAAT
80130593 ATAACAATATTGAAATAAT
1 ATAACAATATTGAAATAAT
80130612 A
1 A
80130613 ATATAGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (19 bp):
ATAACAATATTGAAATAAT
Found at i:80130669 original size:16 final size:17
Alignment explanation
Indices: 80130643--80130675 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
80130633 ATACAATAAT
80130643 ATAGAAAATATAAATAG
1 ATAGAAAATATAAATAG
80130660 ATAG-AAATATAAATAG
1 ATAGAAAATATAAATAG
80130676 GTAAGTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
ATAGAAAATATAAATAG
Found at i:80130733 original size:20 final size:20
Alignment explanation
Indices: 80130706--80130767 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
80130696 TGTAGATGAA
80130706 AATATAGTAGTAATAATAAT
1 AATATAGTAGTAATAATAAT
* * *
80130726 ACTATAGTAATAATGATAAT
1 AATATAGTAGTAATAATAAT
* * *
80130746 AAAAAATTAGTAATAATAAT
1 AATATAGTAGTAATAATAAT
80130766 AA
1 AA
80130768 AATAAAAAAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (20 bp):
AATATAGTAGTAATAATAAT
Found at i:80130756 original size:23 final size:24
Alignment explanation
Indices: 80130730--80130776 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
80130720 AATAATACTA
*
80130730 TAGTAATAATGAT-AATAAAAAAT
1 TAGTAATAATAATAAATAAAAAAT
80130753 TAGTAATAATAATAAAATAAAAAA
1 TAGTAATAATAAT-AAATAAAAAA
80130777 ATATAATGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.57
25 9 0.43
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (24 bp):
TAGTAATAATAATAAATAAAAAAT
Found at i:80130838 original size:3 final size:3
Alignment explanation
Indices: 80130830--80131072 Score: 99
Period size: 3 Copynumber: 79.3 Consensus size: 3
80130820 AATAATGTGG
* * *
80130830 TAA TAA TAA TAA T-A TAT TAA TAA TAA CTAA TAA -AA GGAA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA -TAA TAA TAA
* ** * * *
80130875 TAA TAG TAA CGA TAA GAA TAT TAA TAA TAA CAA TAA T-A TAAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA
* *
80130920 TAA TATA TACA TGAA TAA TAA TAA CAA T-A TAAA GAA TAGGA -AA TAA
1 TAA TA-A TA-A T-AA TAA TAA TAA TAA TAA T-AA TAA TA--A TAA TAA
* * * **
80130966 TAA T-A TAC TAA TAA GAA TAA TAA TAGGT TAA TAA TAA TAGGA GGA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA--A TAA TAA TAA TA--A TAA TAA
* * ** * *
80131013 TAA TAG TAA T-A TAT TAA TAA GGA TACA -AA TAA TAA TGA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
80131057 TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA T
80131073 GGTAAAATGG
Statistics
Matches: 177, Mismatches: 41, Indels: 44
0.68 0.16 0.17
Matches are distributed among these distances:
2 15 0.08
3 140 0.79
4 17 0.10
5 5 0.03
ACGTcount: A:0.59, C:0.03, G:0.09, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:80136151 original size:20 final size:20
Alignment explanation
Indices: 80136126--80136163 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
80136116 TATTTTCCTC
80136126 TCTTTTCTTTCCTC-CTTTCT
1 TCTTTTC-TTCCTCTCTTTCT
80136146 TCTTTTCTTCCTCTCTTT
1 TCTTTTCTTCCTCTCTTT
80136164 TTCCTGGTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (20 bp):
TCTTTTCTTCCTCTCTTTCT
Found at i:80143809 original size:12 final size:12
Alignment explanation
Indices: 80143801--80143830 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
80143791 ATCTATAAAT
80143801 TATATTATATTA
1 TATATTATATTA
80143813 TATATTATATTA
1 TATATTATATTA
80143825 TATATT
1 TATATT
80143831 TTTCTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATTATATTA
Found at i:80144293 original size:14 final size:14
Alignment explanation
Indices: 80144274--80144303 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80144264 TCTATCTTTC
*
80144274 TTATATATTTTTTA
1 TTATATATTATTTA
80144288 TTATATATTATTTA
1 TTATATATTATTTA
80144302 TT
1 TT
80144304 TTGTTATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:80144374 original size:21 final size:22
Alignment explanation
Indices: 80144348--80144391 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
80144338 GCAAAATACT
80144348 TATTATA-TT-CTTATCATTTTA
1 TATTATATTTCCTTAT-ATTTTA
80144369 TATTATATTTCCTTATATTTTA
1 TATTATATTTCCTTATATTTTA
80144391 T
1 T
80144392 TCATATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.33
22 9 0.43
23 5 0.24
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTATATTTCCTTATATTTTA
Found at i:80153965 original size:206 final size:206
Alignment explanation
Indices: 80153443--80154201 Score: 1133
Period size: 206 Copynumber: 3.7 Consensus size: 206
80153433 GCAAATCTGG
* *
80153443 CTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGTACTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
80153508 GATTTGGCTTTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGACATCTCTATATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* *
80153573 AGAACAAATCAAAATTTGCCGTCTCCATATTCGATGGAGAGCAGACACATAGCAGATCTGGCCTT
130 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGACACATAGCAGATCTGGCCTT
80153638 CAGATTGTTTATA
195 CAGA-TGTTTATA
*
80153651 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATAGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
80153716 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
80153781 GAACAAATCAAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGCAGATCTGGCCTTC
131 GAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGACACATAGCAGATCTGGCCTTC
80153846 AGATGTTTATA
196 AGATGTTTATA
* * * *
80153857 CTGAATCAGATCCAAAATGATTTGGCATCCTTGTGTTTACAAGAAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGA-CATAGCT
* * * * *
80153921 GATTTAGCTTTCACGTGCTTACGCTGAAGCAAGTCTAAGATGATTTGGCCTTTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * **
80153986 AGAACAAATCGAAGTTTGGCATCTCCATATTCGATGGAGGGCAGACACATAACAGATCTAACCTT
130 AGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGACACATAGCAGATCTGGCCTT
* *
80154051 CAGATGATTAGA
195 CAGATGTTTATA
* * * * * *
80154063 CTAAAGCAAATCCAAGATGGTTTGGTATCCTTGGGCTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
* ** * * *
80154128 ATTTGGTTTTTGCGTGCTTATGCTGAAGCAAACCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
*
80154193 GGACAAATC
131 GAACAAATC
80154202 GAAGAAGCAG
Statistics
Matches: 501, Mismatches: 48, Indels: 6
0.90 0.09 0.01
Matches are distributed among these distances:
205 1 0.00
206 310 0.62
207 183 0.37
208 7 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGAGCAGACACATAGCAGATCTGGCCTTC
AGATGTTTATA
Found at i:80155861 original size:17 final size:17
Alignment explanation
Indices: 80155841--80155874 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
80155831 TATATTACTA
80155841 TTATTATCCAT-TATTTT
1 TTATTAT-CATATATTTT
80155858 TTATTATCATATATTTT
1 TTATTATCATATATTTT
80155875 ATCTATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATCATATATTTT
Found at i:80155911 original size:14 final size:14
Alignment explanation
Indices: 80155856--80155930 Score: 55
Period size: 14 Copynumber: 5.3 Consensus size: 14
80155846 ATCCATTATT
*
80155856 TTTTATTATCATATA
1 TTTTATT-TTATATA
* *
80155871 TTTTATCTATAAATTA
1 TTTTAT-TTTATA-TA
* *
80155887 TATTATATTATATA
1 TTTTATTTTATATA
80155901 TTTTATTTTATATA
1 TTTTATTTTATATA
*
80155915 -TTT-CTTTATATA
1 TTTTATTTTATATA
80155927 TTTT
1 TTTT
80155931 TTAAAATTGT
Statistics
Matches: 47, Mismatches: 10, Indels: 8
0.72 0.15 0.12
Matches are distributed among these distances:
12 8 0.17
13 6 0.13
14 14 0.30
15 11 0.23
16 8 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (14 bp):
TTTTATTTTATATA
Found at i:80156371 original size:14 final size:14
Alignment explanation
Indices: 80156352--80156381 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
80156342 TCTATCTTTC
*
80156352 TTATATATTTTTTA
1 TTATATATTATTTA
80156366 TTATATATTATTTA
1 TTATATATTATTTA
80156380 TT
1 TT
80156382 TTGTTATACT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATATATTATTTA
Found at i:80156449 original size:21 final size:22
Alignment explanation
Indices: 80156425--80156468 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
80156415 TGCAAATACT
80156425 TATTATA-TT-CTTATCATTTTA
1 TATTATATTTCCTTAT-ATTTTA
80156446 TATTATATTTCCTTATATTTTA
1 TATTATATTTCCTTATATTTTA
80156468 T
1 T
80156469 TCATATTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.33
22 9 0.43
23 5 0.24
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTATATTTCCTTATATTTTA
Found at i:80160573 original size:28 final size:29
Alignment explanation
Indices: 80160541--80160606 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
80160531 TTTTTAATGG
80160541 AAGGATAGCCTTTGTAGCGAACCTCT-AA
1 AAGGATAGCCTTTGTAGCGAACCTCTGAA
* * *
80160569 AAGGATAGCATTTGTGGGGAACCTCTGAA
1 AAGGATAGCCTTTGTAGCGAACCTCTGAA
80160598 AAGGA-AGCC
1 AAGGATAGCC
80160607 CTCTTGGTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.79
29 7 0.21
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (29 bp):
AAGGATAGCCTTTGTAGCGAACCTCTGAA
Found at i:80160647 original size:23 final size:23
Alignment explanation
Indices: 80160621--80160676 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
80160611 TGGTAAAATT
* *
80160621 TGAAAGAAAGAAATGGCGAACTC
1 TGAAAGAAAGAAATGGCAAACAC
*
80160644 TGAAAGAAAGAAATGGTAAACAC
1 TGAAAGAAAGAAATGGCAAACAC
80160667 TGAAA-AAAGA
1 TGAAAGAAAGA
80160677 GCACTCGTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 5 0.17
23 25 0.83
ACGTcount: A:0.55, C:0.09, G:0.23, T:0.12
Consensus pattern (23 bp):
TGAAAGAAAGAAATGGCAAACAC
Found at i:80166057 original size:21 final size:22
Alignment explanation
Indices: 80166033--80166079 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
80166023 ATTTTTAAAT
80166033 TTTTACAATG-AATTACCTA-GG
1 TTTT-CAATGTAATTACCTAGGG
* *
80166054 TTTTTATTGTAATTACCTAGGG
1 TTTTCAATGTAATTACCTAGGG
80166076 TTTT
1 TTTT
80166080 TATAGGGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 3 0.14
21 13 0.59
22 6 0.27
ACGTcount: A:0.26, C:0.11, G:0.15, T:0.49
Consensus pattern (22 bp):
TTTTCAATGTAATTACCTAGGG
Found at i:80166077 original size:22 final size:23
Alignment explanation
Indices: 80166042--80166112 Score: 94
Period size: 22 Copynumber: 3.2 Consensus size: 23
80166032 TTTTTACAAT
*
80166042 GAATTACCTA-GGTTTTTAT-TG
1 GAATTACCTAGGGTTTTTATAGG
*
80166063 TAATTACCTAGGGTTTTTATAGG
1 GAATTACCTAGGGTTTTTATAGG
*
80166086 GAATTA-CTTGGGTTTTTATAGG
1 GAATTACCTAGGGTTTTTATAGG
80166108 GAATT
1 GAATT
80166113 GAGTTACTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
21 9 0.20
22 29 0.66
23 6 0.14
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.45
Consensus pattern (23 bp):
GAATTACCTAGGGTTTTTATAGG
Found at i:80166911 original size:36 final size:35
Alignment explanation
Indices: 80166836--80166918 Score: 84
Period size: 37 Copynumber: 2.4 Consensus size: 35
80166826 AATAATTTTC
80166836 GGAAAATA--TTTTTAAAAATTGAATTGATTTTAT
1 GGAAAATATTTTTTTAAAAATTGAATTGATTTTAT
* *
80166869 GGAAAATTGATTTTTTTAATATTTGAA-TGATTTTGA-
1 GGAAAA-T-ATTTTTTTAAAAATTGAATTGATTTT-AT
*
80166905 GTAAAATATTTTTT
1 GGAAAATATTTTTT
80166919 ATTGTTTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
33 6 0.14
34 8 0.19
35 2 0.05
36 12 0.29
37 14 0.33
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.49
Consensus pattern (35 bp):
GGAAAATATTTTTTTAAAAATTGAATTGATTTTAT
Found at i:80167188 original size:23 final size:21
Alignment explanation
Indices: 80167162--80167215 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
80167152 CAAGATAAAC
*
80167162 AAATACTAGTATTTATATTATTA
1 AAATACTA-TATTTATACTA-TA
*
80167185 AAATATTCATATTTATACTATA
1 AAATACT-ATATTTATACTATA
*
80167207 AAAAACTAT
1 AAATACTAT
80167216 CAAACAACAG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 7 0.27
23 16 0.62
24 1 0.04
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (21 bp):
AAATACTATATTTATACTATA
Found at i:80168078 original size:422 final size:421
Alignment explanation
Indices: 80167281--80172076 Score: 2631
Period size: 422 Copynumber: 11.0 Consensus size: 421
80167271 TTAAAAAAAA
* *
80167281 TATTCACTAATTATGTGGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGA-
1 TATTGACTAATTA-GTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
*
80167345 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGTAA
65 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
*
80167410 AGCAAAAGGCAAAAAATGAAACATGAAACATATGGTACATAAAAATACATTAAAGTGAAAGAAAA
130 AGCAAAAGGC-----A--AAACATGAAACATATGGTACAT-AAAATACATTAAAGTAAAAGAAAA
* *
80167475 AGTGGTAAAGTAGGAAGGCAATTATAAAGGAAGATGTTGTAAAATGTCTTCACTTATGGTCTTTG
187 AGTGGTAAAGTAGGAAGGCAATTATAGAGGAAGATGCTGT-AAATGTCTTCACTTATGGTCTTTG
*
80167540 GTCTTTCTTTATTACTAATATTCAGTTAAAGCTGATATTTTATCCTAAAAAAGAATAATAGTACG
251 GTCTTTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACG
* *
80167605 TAAGATAGACTTATTAATCGTTTAAAGCCAATT-ATTTCTTTTGACTTCATAACTGATGAGATTC
316 TAAGATAGACTTATTAATCGTTTAAAGCAAATTAATTTC-TTTGACTTCATAACTGATAAGATTC
80167669 ATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
380 ATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
80167711 TATTGACTAATTGAGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
1 TATTGACTAATT-AGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
80167776 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
65 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
80167841 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
130 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
80167906 AGTAGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
195 AGTAGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
80167971 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
260 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
80168036 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
325 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
* * * *
80168101 TTTTACAGGTTAAAATAGTGAGATGCTTGTTT
390 TTTGACAGGTTAAAATAGTAAGATGTTTATTT
* * * * * ** * *
80168133 TATTAAGAATAATT-TTCG--GA-AAATATTTTTAAAAATTGAATTGATTTTATGGAAAATTGAT
1 TATT--GACTAATTAGTAGTTTATACATATTTTT-AATCTT-AATT--TTCT-TGG-ACA--GA-
* * ** * * * * ***** * * *
80168194 TTTTTTAATATTTGAATGATTTTGAGTAAAATATTTTTATTGTTTGACAA-AACTT---TCTAAA
55 TATTGT-GGATTTGATTCA-TTTAAAT-AAATCCAAATATCG-TT--CAATTA-TTAAGGC-AAA
** * * *** * * *** * ** **
80168255 A-GTTATTTTTAAT-G-AAA-CAAAATATTATAA-ATGCATTTTCTTTTGACA-ACCGAAATTGA
112 ATG-GGTTTTGATTGGAAAAGCAAAA-GGCAAAACATGAAACATATGGT-ACATA---AAATACA
* * * ** ** * ** * *
80168314 TTTTATGATAAAATAAAATTTTATAACAACTA--ATA-GC--TTATAGACTTAAGAATAAC--CA
171 -TTAAAG-TAAAAGAAAAAGTGGT-A-AAGTAGGA-AGGCAATTATAGA-GGAAG-AT-GCTGTA
* ** * * * * * * *
80168372 AA-GTCTATTA-AAAT-TTAATTTGGAGC-TACATATATTA-T-ATATATGAGAGTAGATAG-TG
228 AATGTCT-TCACTTATGGT-CTTTGG-TCTTTC-TTTATTACTAATAT-TCAG-TTA-A-AGATG
* ** * * * * * * * * **
80168430 ACACATTA-CAGT-TAGAAGACATATACGAAGCTAAACAAGATAAACAAATACTAGTATTTATAT
285 ATATTTTATC-CTAAAAAAGA-ATA-A--TAG-T--AC--G-T-AAGATAGACT--TATTAATCG
* * * * ** *
80168493 TATTAAA--ATATTCATATTT-TAT-ACTATAAAAAACT-ATCAA-ACAACAGTGTTATATTTGA
336 T-TTAAAGCAAATT-A-ATTTCTTTGACT-T-CATAACTGAT-AAGA-TTCA-TG--ACA--TG-
* ** * ** * ** * ***
80168552 AAATTTT-TCATTTTTAATTACCAAAACAAAAACTTAAAAAAA
388 --ATTTTGACA-GGTTAA--A--ATAGTAAGATGTT--TATTT
* *
80168594 TATTCACTAATTATGTGGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGA-
1 TATTGACTAATTA-GTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
*
80168658 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGTAA
65 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
*
80168723 AGCAAAAGGCAAAAAATGAAACATGAAACATATGGTACATAAAAATACATTAAAGTGAAAGAAAA
130 AGCAAAAGGC-----A--AAACATGAAACATATGGTACAT-AAAATACATTAAAGTAAAAGAAAA
* *
80168788 AGTGGTAAAGTAGGAAGGCAATTATAAAGGAAGATGTTGTAAAATGTCTTCACTTATGGTCTTTG
187 AGTGGTAAAGTAGGAAGGCAATTATAGAGGAAGATGCTGT-AAATGTCTTCACTTATGGTCTTTG
*
80168853 GTCTTTCTTTATTACTAATATTCAGTTAAAGCTGATATTTTATCCTAAAAAAGAATAATAGTACG
251 GTCTTTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACG
* *
80168918 TAAGATAGACTTATTAATCGTTTAAAGCCAATT-ATTTCTTTTGACTTCATAACTGATGAGATTC
316 TAAGATAGACTTATTAATCGTTTAAAGCAAATTAATTTC-TTTGACTTCATAACTGATAAGATTC
80168982 ATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
380 ATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
80169024 TATTGACTAATTGAGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
1 TATTGACTAATT-AGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
80169089 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
65 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
80169154 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
130 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
*
80169219 AGTGGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
195 AGTAGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
80169284 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
260 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
80169349 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
325 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
* * * *
80169414 TTTTACAGGTTAAAATAGTGAGATGCTTGTTT
390 TTTGACAGGTTAAAATAGTAAGATGTTTATTT
* * * * * ** * *
80169446 TATTAAGAATAATT-TTCG--GA-AAATATTTTTAAAAATTGAATTGATTTTATGGAAAATTGAT
1 TATT--GACTAATTAGTAGTTTATACATATTTTT-AATCTT-AATT--TTCT-TGG-ACA--GA-
* * ** * * * * ***** * * *
80169507 TTTTTTAATATTTGAATGATTTTGAGTAAAATATTTTTATTGTTTGACAA-AACTT---TCTAAA
55 TATTGT-GGATTTGATTCA-TTTAAAT-AAATCCAAATATCG-TT--CAATTA-TTAAGGC-AAA
** * * *** * * *** * ** **
80169568 A-GTTATTTTTAAT-G-AAA-CAAAATATTATAA-ATGCATTTTCTTTTGACA-ACCGAAATTGA
112 ATG-GGTTTTGATTGGAAAAGCAAAA-GGCAAAACATGAAACATATGGT-ACATA---AAATACA
* * * ** ** * ** * *
80169627 TTTTATGATAAAATAAAATTTTATAACAACTA--ATA-GC--TTATAGACTTAAGAATAAC--CA
171 -TTAAAG-TAAAAGAAAAAGTGGT-A-AAGTAGGA-AGGCAATTATAGA-GGAAG-AT-GCTGTA
* ** * * * * * * *
80169685 AA-GTCTATTA-AAAT-TTAATTTGGAGC-TACATATATTA-T-ATATATGAGAGTAGATAG-TG
228 AATGTCT-TCACTTATGGT-CTTTGG-TCTTTC-TTTATTACTAATAT-TCAG-TTA-A-AGATG
* ** * * * * * * * * **
80169743 ACACATTA-CAGT-TAGAAGACATATACGAAGCTAAACAAGATAAACAAATACTAGTATTTATAT
285 ATATTTTATC-CTAAAAAAGA-ATA-A--TAG-T--AC--G-T-AAGATAGACT--TATTAATCG
* * * * ** *
80169806 TATTAAA--ATATTCATATTT-TAT-ACTATAAAAAACT-ATCAA-ACAACAGTGTTATATTTGA
336 T-TTAAAGCAAATT-A-ATTTCTTTGACT-T-CATAACTGAT-AAGA-TTCA-TG--ACA--TG-
* ** * * ** ***** **
80169865 AAATTTT-TCATTTTTAATTACCAA-AACAAAAACT
388 --ATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
*** ** * * * *** *** * * * * * * *
80169899 TAAAAAAAATATTCACTAATTATGTGGTTTATACATATTTTTAATCTTAATTTTCTTG-GACAGA
1 TATTGACTA-ATT-AGTAGTT-TAT-ACATATTTTTAATCTTAA--TT--TTCT-TGGACAGATA
**
80169963 TAT-TGTGGATTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTT
57 T-TGTG-GATTTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTT
*
80170027 TGATTGGTAAAGCAAAAGGCAAAAAATGAAACATGAAACATATGGTACATAAAAATACATTAAAG
120 TGATTGGAAAAGCAAAAGGC-----A--AAACATGAAACATATGGTACAT-AAAATACATTAAAG
* * *
80170092 TGAAAGAAAAAGTGGTAAAGTAGGAAGGCAATTATAAAGGAAGATGTTGTAAAATGTCTTCACTT
177 TAAAAGAAAAAGTGGTAAAGTAGGAAGGCAATTATAGAGGAAGATGCTGT-AAATGTCTTCACTT
*
80170157 ATGGTCTTTGGTCTTTCTTTATTACTAATATTCAGTTAAAGCTGATATTTTATCCTAAAAAAGAA
241 ATGGTCTTTGGTCTTTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAA
*
80170222 TAATAGTACGTAAGATAGACTTATTAATCGTTTAAAGCCAATT-ATTTCTTTTGACTTCATAACT
306 TAATAGTACGTAAGATAGACTTATTAATCGTTTAAAGCAAATTAATTTC-TTTGACTTCATAACT
*
80170286 GATGAGATTCATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
370 GATAAGATTCATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
80170338 TATTGACTAATTGAGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
1 TATTGACTAATT-AGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
80170403 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
65 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
80170468 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
130 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
*
80170533 AGTGGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
195 AGTAGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
80170598 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
260 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
80170663 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
325 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
* * * *
80170728 TTTTACAGGTTAAAATAGTGAGATGCTTGTTT
390 TTTGACAGGTTAAAATAGTAAGATGTTTATTT
* * * * * * ** * *
80170760 TATTAAGAATAATT-TTCG--GA-AAATATTTTAAAAATTGAATTGATTTTATGGAAAATTGATT
1 TATT--GACTAATTAGTAGTTTATACATATTTTTAATCTT-AATT--TTCT-TGG-ACA--GA-T
* * ** * * * * ***** * * *
80170821 TTTTTAATATTTGAATGATTTTGAGTAAAATATTTTTTATTGTTTGACAA-AACTT---TCTAAA
56 ATTGT-GGATTTGATTCA-TTTAAAT-AAAT-CCAAATATCG-TT--CAATTA-TTAAGGC-AAA
** * * *** * * *** * ** **
80170882 A-GTTATTTTTAAT-G-AAA-CAAAATATTATAA-ATGCATTTTCTTTTGACA-ACCGAAATTGA
112 ATG-GGTTTTGATTGGAAAAGCAAAA-GGCAAAACATGAAACATATGGT-ACATA---AAATACA
* * * ** ** * ** * *
80170941 TTTTATGATAAAATAAAATTTTATAACAACTA--ATA-GC--TTATAGACTTAAGAATAAC--CA
171 -TTAAAG-TAAAAGAAAAAGTGGT-A-AAGTAGGA-AGGCAATTATAGA-GGAAG-AT-GCTGTA
* ** * * * * * * *
80170999 AA-GTCTATTA-AAAT-TTAATTTGGAGC-TACATATATTA-T-ATATATGAGAGTAGATAG-TG
228 AATGTCT-TCACTTATGGT-CTTTGG-TCTTTC-TTTATTACTAATAT-TCAG-TTA-A-AGATG
* ** * * * * * * * * **
80171057 ACACATTA-CAGT-TAGAAGACATATACGAAGCTAAACAAGATAAACAAATACTAGTATTTATAT
285 ATATTTTATC-CTAAAAAAGA-ATA-A--TAG-T--AC--G-T-AAGATAGACT--TATTAATCG
* * * * ** *
80171120 TATTAAA--ATATTCATATTT-TAT-ACTATAAAAAACT-ATCAA-ACAACAGTGTTATATTTGA
336 T-TTAAAGCAAATT-A-ATTTCTTTGACT-T-CATAACTGAT-AAGA-TTCA-TG--ACA--TG-
* ** * * ** ***** **
80171179 AAATTTT-TCATTTTTAATTACCAA-AACAAAAACT
388 --ATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
*** ** * * * *** *** * * * * * * *
80171213 TAAAAAAAATATTCACTAATTATGTGGTTTATACATATTTTTAATCTTAATTTTCTTG-GACAGA
1 TATTGACTA-ATT-AGTAGTT-TAT-ACATATTTTTAATCTTAA--TT--TTCT-TGGACAGATA
**
80171277 TAT-TGTGGATTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTT
57 T-TGTG-GATTTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTT
*
80171341 TGATTGGTAAAGCAAAAGGCAAAAAATGAAACATGAAACATATGGTACATAAAAATACATTAAAG
120 TGATTGGAAAAGCAAAAGGC-----A--AAACATGAAACATATGGTACAT-AAAATACATTAAAG
* * *
80171406 TGAAAGAAAAAGTGGTAAAGTAGGAAGGCAATTATAAAGGAAGATGTTGTAAAATGTCTTCACTT
177 TAAAAGAAAAAGTGGTAAAGTAGGAAGGCAATTATAGAGGAAGATGCTGT-AAATGTCTTCACTT
*
80171471 ATGGTCTTTGGTCTTTCTTTATTACTAATATTCAGTTAAAGCTGATATTTTATCCT-AAAAAGAA
241 ATGGTCTTTGGTCTTTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAA
*
80171535 TAATAGTACGTAAGATAGACTTATTAATCGTTTAAAGCCAATT-ATTTCTTTTGACTTCATAACT
306 TAATAGTACGTAAGATAGACTTATTAATCGTTTAAAGCAAATTAATTTC-TTTGACTTCATAACT
*
80171599 GATGAGATTCATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
370 GATAAGATTCATGACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
80171651 TATTGACTAATTGAGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
1 TATTGACTAATT-AGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
80171716 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
65 TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAA
80171781 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
130 AGCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAA
*
80171846 AGTGGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
195 AGTAGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTT
80171911 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
260 TATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGA
*
80171976 CTTATTAATCATTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
325 CTTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGAT
* * * *
80172041 TTTTACAGGTTAAAATAGTGAGATGCTTGTTT
390 TTTGACAGGTTAAAATAGTAAGATGTTTATTT
80172073 TATT
1 TATT
80172077 AAGAATAATT
Statistics
Matches: 3232, Mismatches: 745, Indels: 786
0.68 0.16 0.17
Matches are distributed among these distances:
419 30 0.01
420 15 0.00
421 77 0.02
422 742 0.23
423 232 0.07
424 95 0.03
425 5 0.00
426 5 0.00
427 8 0.00
428 16 0.00
429 60 0.02
430 240 0.07
431 281 0.09
432 139 0.04
433 86 0.03
434 102 0.03
435 28 0.01
436 36 0.01
437 33 0.01
438 28 0.01
439 11 0.00
440 8 0.00
441 4 0.00
442 5 0.00
443 15 0.00
444 53 0.02
445 60 0.02
446 67 0.02
447 74 0.02
448 20 0.01
449 14 0.00
450 21 0.01
451 45 0.01
452 40 0.01
453 36 0.01
454 55 0.02
455 45 0.01
456 27 0.01
457 62 0.02
458 81 0.03
459 112 0.03
460 68 0.02
461 31 0.01
462 6 0.00
463 5 0.00
464 9 0.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (421 bp):
TATTGACTAATTAGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGATT
TGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAAA
GCAAAAGGCAAAACATGAAACATATGGTACATAAAATACATTAAAGTAAAAGAAAAAGTGGTAAA
GTAGGAAGGCAATTATAGAGGAAGATGCTGTAAATGTCTTCACTTATGGTCTTTGGTCTTTCTTT
ATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGATAGAC
TTATTAATCGTTTAAAGCAAATTAATTTCTTTGACTTCATAACTGATAAGATTCATGACATGATT
TTGACAGGTTAAAATAGTAAGATGTTTATTT
Found at i:80170851 original size:36 final size:35
Alignment explanation
Indices: 80170785--80170858 Score: 80
Period size: 37 Copynumber: 2.1 Consensus size: 35
80170775 TCGGAAAATA
80170785 TTTTAAAAATTGAATTGATTTTATGGAAAATTGATTT
1 TTTTAAAAATTGAATTGATTTTATGGAAAA-T-ATTT
* * *
80170822 TTTTAATATTTGAA-TGATTTTGA-GTAAAATATTT
1 TTTTAAAAATTGAATTGATTTT-ATGGAAAATATTT
80170856 TTT
1 TTT
80170859 ATTGTTTGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
34 7 0.21
35 1 0.03
36 12 0.36
37 13 0.39
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (35 bp):
TTTTAAAAATTGAATTGATTTTATGGAAAATATTT
Found at i:80172127 original size:33 final size:31
Alignment explanation
Indices: 80172079--80172170 Score: 85
Period size: 36 Copynumber: 2.8 Consensus size: 31
80172069 GTTTTATTAA
* *
80172079 GAATAATTTTCGGAAAATATTTTTAAAAATT
1 GAATGATTTTGGGAAAATATTTTTAAAAATT
* * *
80172110 GAATTGATTTTATGGAAAATTGATTTTTTAATATTT
1 GAA-TGATTTT-GGGAAAA-T-A-TTTTTAAAAATT
80172146 GAATGATTTTGGGTAAAATATTTTT
1 GAATGATTTTGGG-AAAATATTTTT
80172171 TATTGTTTGA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
31 3 0.06
32 11 0.22
33 7 0.14
34 4 0.08
35 12 0.24
36 13 0.26
ACGTcount: A:0.37, C:0.01, G:0.14, T:0.48
Consensus pattern (31 bp):
GAATGATTTTGGGAAAATATTTTTAAAAATT
Found at i:80172164 original size:35 final size:34
Alignment explanation
Indices: 80172090--80172172 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 34
80172080 AATAATTTTC
*
80172090 GGAAAATA-TTTTTAAAAATTGAATTGATTTTAT
1 GGAAAATATTTTTTAAAAATTGAATTGATTTTAG
* *
80172123 GGAAAATTGATTTTTTAATATTTGAA-TGATTTT-G
1 GGAAAA-T-ATTTTTTAAAAATTGAATTGATTTTAG
80172157 GGTAAAATATTTTTTA
1 GG-AAAATATTTTTTA
80172173 TTGTTTGACA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
33 14 0.33
34 4 0.09
35 12 0.28
36 13 0.30
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.48
Consensus pattern (34 bp):
GGAAAATATTTTTTAAAAATTGAATTGATTTTAG
Found at i:80172441 original size:23 final size:23
Alignment explanation
Indices: 80172415--80172465 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
80172405 CAAGATAAAC
*
80172415 AAATACTAATA-TTTATATTATTA
1 AAATACTAATATTTTATACTA-TA
* *
80172438 AAATATTCATATTTTATACTATA
1 AAATACTAATATTTTATACTATA
80172461 AAATA
1 AAATA
80172466 TTTCTAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATACTAATATTTTATACTATA
Found at i:80179176 original size:29 final size:28
Alignment explanation
Indices: 80179121--80179177 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 28
80179111 TTTTAAAGAT
*
80179121 AAATAATTTTAGAAGTATATATGAATAA
1 AAATAATTTTAGAAGTATAGATGAATAA
*
80179149 AAATAAATTTTAGAATTAATAGAT-AATAA
1 AAAT-AATTTTAGAAGT-ATAGATGAATAA
80179178 TTTTAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.16
29 16 0.64
30 5 0.20
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (28 bp):
AAATAATTTTAGAAGTATAGATGAATAA
Found at i:80186023 original size:40 final size:40
Alignment explanation
Indices: 80185958--80186222 Score: 340
Period size: 40 Copynumber: 6.7 Consensus size: 40
80185948 GGATATAACC
* * * * *
80185958 ACTCGCAC-AAGGCCTTCGGGTCTTAGTCCGG-ATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
* *
80185997 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
*
80186037 ACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
80186077 ACTCGCACAAATGTCTTCGAGG-CTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCG-GGACTTAGCCCGGAATTAGTA
80186117 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
80186157 ACTCACACAAATGCCTTCGGGACTTAGCCCGGAATTAATC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
80186197 ACTAGCACAAATGTCTTTGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
80186223 ACCCCGTTAG
Statistics
Matches: 204, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 9 0.04
40 191 0.94
41 4 0.02
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:80189561 original size:43 final size:43
Alignment explanation
Indices: 80189505--80189634 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 43
80189495 CTCACATGTT
* * *
80189505 ATCACATATCGATGCCACTATCCCAGACAAGGTCTTACACG-AA-
1 ATCA-ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGTAAC
*
80189548 ATCAATTAACGATGCCAATGTCCCAAACATGGTCTTACACGTAAC
1 ATCAA-T-ACGATGCCAATGTCCCAGACATGGTCTTACACGTAAC
* * *
80189593 CTCAATACAATGCCAATGTCCCAGACATGGTCTTACATGTAA
1 ATCAATACGATGCCAATGTCCCAGACATGGTCTTACACGTAA
80189635 TCACAATTTG
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.01
43 66 0.88
44 4 0.05
45 4 0.05
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.24
Consensus pattern (43 bp):
ATCAATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAC
Found at i:80191958 original size:60 final size:62
Alignment explanation
Indices: 80191844--80192015 Score: 178
Period size: 60 Copynumber: 2.8 Consensus size: 62
80191834 TCAAGCTTTA
** * *
80191844 CTGGGCC-TAAGCCCTATT-CAAAAATCAGAGCTA-ACTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATTACAAGTATCAGAG-TATACTGGGTC-TAGCCCATATCAATATCAAT
*
80191906 CTGGGCCATAGCCC-CTTACAA-TATCAGAGTATACTGGGTCTAGCCCATATCAATATCAAT
1 CTGGGCCATAGCCCTATTACAAGTATCAGAGTATACTGGGTCTAGCCCATATCAATATCAAT
* * * * *
80191966 CTGGGTCGTAGCCCTATTACAAGT-TGAGA-TATATTGGGTCTTGCCCATAT
1 CTGGGCCATAGCCCTATTACAAGTATCAGAGTATACTGGGTCTAGCCCATAT
80192016 TAACACAGTT
Statistics
Matches: 95, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
60 52 0.55
61 26 0.27
62 16 0.17
63 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (62 bp):
CTGGGCCATAGCCCTATTACAAGTATCAGAGTATACTGGGTCTAGCCCATATCAATATCAAT
Found at i:80200670 original size:30 final size:30
Alignment explanation
Indices: 80200634--80200705 Score: 101
Period size: 30 Copynumber: 2.4 Consensus size: 30
80200624 GTCCTTTTTT
80200634 AAAATTAAATTTGA-CACTCAACCTTTTAAA
1 AAAATTAAATTTGATCA-TCAACCTTTTAAA
*
80200664 AAAATTAATTTTGATCATCAACCTTTTAAA
1 AAAATTAAATTTGATCATCAACCTTTTAAA
*
80200694 AAGAATTGAATT
1 AA-AATTAAATT
80200706 GATTTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
30 28 0.76
31 9 0.24
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (30 bp):
AAAATTAAATTTGATCATCAACCTTTTAAA
Found at i:80202307 original size:23 final size:22
Alignment explanation
Indices: 80202255--80202298 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
80202245 TTTTGCCTCG
80202255 ATTTTTTAGGGTTAGGGTTTTT
1 ATTTTTTAGGGTTAGGGTTTTT
80202277 ATTATTTTAGGGTTAGGGTTTT
1 ATT-TTTTAGGGTTAGGGTTTT
80202299 AGTGTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57
Consensus pattern (22 bp):
ATTTTTTAGGGTTAGGGTTTTT
Found at i:80203318 original size:7 final size:7
Alignment explanation
Indices: 80203306--80203340 Score: 52
Period size: 7 Copynumber: 4.7 Consensus size: 7
80203296 AAAAATACTA
80203306 AAACCCT
1 AAACCCT
80203313 AAACCCT
1 AAACCCT
80203320 AAACCCT
1 AAACCCT
80203327 AAAAGCCCT
1 -AAA-CCCT
80203336 AAACC
1 AAACC
80203341 ATTGAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 16 0.62
8 6 0.23
9 4 0.15
ACGTcount: A:0.46, C:0.40, G:0.03, T:0.11
Consensus pattern (7 bp):
AAACCCT
Found at i:80203337 original size:16 final size:14
Alignment explanation
Indices: 80203306--80203340 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
80203296 AAAAATACTA
80203306 AAACCCTAAACCCT
1 AAACCCTAAACCCT
80203320 AAACCCTAAAAGCCCT
1 AAACCCT-AAA-CCCT
80203336 AAACC
1 AAACC
80203341 ATTGAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.37
15 3 0.16
16 9 0.47
ACGTcount: A:0.46, C:0.40, G:0.03, T:0.11
Consensus pattern (14 bp):
AAACCCTAAACCCT
Found at i:80205820 original size:20 final size:19
Alignment explanation
Indices: 80205740--80205822 Score: 60
Period size: 20 Copynumber: 4.1 Consensus size: 19
80205730 TATATAAATT
* *
80205740 ATTTTTAAAAAATCATTGAA
1 ATTTTAAAAAAATAATT-AA
*
80205760 ATTATTTAAAAAACT-ATTAA
1 A-T-TTTAAAAAAATAATTAA
* *
80205780 CATTATAAAAAAATATTTTAA
1 -ATTTTAAAAAAATA-ATTAA
80205801 ATTTTAAAAAAATTAATTAA
1 ATTTTAAAAAAA-TAATTAA
80205821 AT
1 AT
80205823 GCTTACATGC
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
19 9 0.18
20 21 0.42
21 11 0.22
22 9 0.18
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (19 bp):
ATTTTAAAAAAATAATTAA
Found at i:80207158 original size:15 final size:15
Alignment explanation
Indices: 80207140--80207169 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80207130 AAATTTTAAT
*
80207140 TTTTTATAGTTTATA
1 TTTTTATAATTTATA
80207155 TTTTTATAATTTATA
1 TTTTTATAATTTATA
80207170 AAGGATTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:80208149 original size:22 final size:22
Alignment explanation
Indices: 80208124--80208176 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
80208114 AACAACTATA
* **
80208124 TTATTTTTTATATCTCTCTTTT
1 TTATTTTTTATATCTATAATTT
* * *
80208146 TTATATTTAATTTCTATAATTT
1 TTATTTTTTATATCTATAATTT
80208168 TTATTTTTT
1 TTATTTTTT
80208177 TAAAAGATAA
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.21, C:0.08, G:0.00, T:0.72
Consensus pattern (22 bp):
TTATTTTTTATATCTATAATTT
Found at i:80210047 original size:35 final size:35
Alignment explanation
Indices: 80209992--80210068 Score: 95
Period size: 35 Copynumber: 2.2 Consensus size: 35
80209982 ATCAGTCAGT
* *
80209992 TACAGATTTGGGCTTAAGCCCAT-TATGGATACAGA
1 TACAGATTCGGGCTTAAGCCCATCT-TAGATACAGA
*
80210027 TATAGATTCGGGCCTT-AGCCCATCTTAGATACAGA
1 TACAGATTCGGG-CTTAAGCCCATCTTAGATACAGA
80210062 TACAGAT
1 TACAGAT
80210069 GTGCAAATCA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
35 32 0.89
36 4 0.11
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (35 bp):
TACAGATTCGGGCTTAAGCCCATCTTAGATACAGA
Found at i:80217288 original size:35 final size:34
Alignment explanation
Indices: 80217220--80217293 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 34
80217210 AGTAAGTTAT
*
80217220 AGATTCGGGCTTAAGCCCATTACGGATATAGATAC
1 AGATTCGGGCTTAAGCCCATTAC-GATACAGATAC
80217255 AGATTCGGGCCTT-AGCCCATATTA-GATACAGATAC
1 AGATTCGGG-CTTAAGCCC--ATTACGATACAGATAC
80217290 AGAT
1 AGAT
80217294 ACAGATGTGC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
35 28 0.80
36 3 0.09
37 4 0.11
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (34 bp):
AGATTCGGGCTTAAGCCCATTACGATACAGATAC
Found at i:80222315 original size:9 final size:9
Alignment explanation
Indices: 80222301--80222333 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
80222291 ATCTATATAC
80222301 AAGCATTTT
1 AAGCATTTT
80222310 AAGCATTTT
1 AAGCATTTT
80222319 AAGCATTTT
1 AAGCATTTT
80222328 AAGCAT
1 AAGCAT
80222334 GTTATCTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.39
Consensus pattern (9 bp):
AAGCATTTT
Found at i:80239696 original size:22 final size:22
Alignment explanation
Indices: 80239671--80239720 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
80239661 AAATTTTGAA
80239671 TTTTTACAATGAATTACCTA-GG
1 TTTTTACAAT-AATTACCTAGGG
* *
80239693 TTTTTCCTATAATTACCTAGGG
1 TTTTTACAATAATTACCTAGGG
80239715 TTTTTA
1 TTTTTA
80239721 TAGGGAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.48
Consensus pattern (22 bp):
TTTTTACAATAATTACCTAGGG
Found at i:80239729 original size:23 final size:22
Alignment explanation
Indices: 80239703--80239751 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
80239693 TTTTTCCTAT
*
80239703 AATTACCTAGGGTTTTTATAGGG
1 AATTA-CTAGAGTTTTTATAGGG
*
80239726 AATTACTTGAGTTTTTATAGGG
1 AATTACTAGAGTTTTTATAGGG
80239748 AATT
1 AATT
80239752 GAGTTACTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.29, C:0.06, G:0.22, T:0.43
Consensus pattern (22 bp):
AATTACTAGAGTTTTTATAGGG
Found at i:80240838 original size:422 final size:425
Alignment explanation
Indices: 80240041--80240896 Score: 1472
Period size: 422 Copynumber: 2.0 Consensus size: 425
80240031 TTAAAAAAAA
*
80240041 TATTCACTAATTATGTGGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
1 TATTCACTAATTATGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
*
80240106 TGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGTAAA
66 TGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAAA
*
80240171 GCAAAAGGCAAAAAATGAAACATGAAACATATGGTACATAAAAATACATTAAAGTGAAAGAAAAA
131 GCAAAAGGC----AA-GAAACATGAAACATATGGTACATAAAAATACATTAAAGTAAAAGAAAAA
*
80240236 GTGGTAAAGTAGGAAGGCAATTATAAAGGAAGATGTTGTAAAATGTCTTCACTTATGGTCTTTGG
191 GTGGTAAAGTAGGAAGGCAATTATAAAGGAAGATGCTGTAAAATGTCTTCACTTATGGTCTTTGG
*
80240301 TCTTTCTTTATTACTAATATTCAGTTAAAGCTGATATTTTATCCTAAAAAAGAATAATAGTACGT
256 TCTTTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGT
* *
80240366 AAGATAGACTTATTAATCGTTTAAAGCCAATTATTTCTTTTGACTTCATAACTGATGAGATTCAT
321 AAGATAGACTTATTAATCGTTTAAAGCAAATTATTTCTTTTGACTTCATAACTGATAAGATTCAT
*
80240431 GACATGATTTTGACAGGTTAAAATAGTAAGATGTTTATTT
386 GACATGATTTTGACAGGTTAAAATAGTAAGATGCTTATTT
*
80240471 TATTGACTAATTGA-GTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGA
1 TATTCACTAATT-ATGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGA
80240535 TTTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAA
65 -TTGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAA
80240600 AAGCAAAAGGC-A-AAACATGAAACATATGGTACAT-AAAATACATTAAAGTAAAAGAAAAAGTG
129 AAGCAAAAGGCAAGAAACATGAAACATATGGTACATAAAAATACATTAAAGTAAAAGAAAAAGTG
* *
80240662 GTAAAGTGGGAAGGCAATTATAGAGGAAGATGCTGT-AAATGTCTTCACTTATGGTCTTTGGTCT
194 GTAAAGTAGGAAGGCAATTATAAAGGAAGATGCTGTAAAATGTCTTCACTTATGGTCTTTGGTCT
80240726 TTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAG
259 TTCTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAG
80240791 ATAGACTTATTAATCGTTTAAAGCAAATTAATTTC-TTTGACTTCATAACTGATAAGATTCATGA
324 ATAGACTTATTAATCGTTTAAAGCAAATT-ATTTCTTTTGACTTCATAACTGATAAGATTCATGA
* * *
80240855 CATGATTTTTACAGGTTAAAATAGTGAGATGCTTGTTT
388 CATGATTTTGACAGGTTAAAATAGTAAGATGCTTATTT
80240893 TATT
1 TATT
80240897 AAGAATAATT
Statistics
Matches: 409, Mismatches: 14, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
422 186 0.45
423 65 0.16
424 22 0.05
426 1 0.00
430 60 0.15
431 75 0.18
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (425 bp):
TATTCACTAATTATGTAGTTTATACATATTTTTAATCTTAATTTTCTTGGACAGATATTGTGGAT
TGATTCATTTAAATAAATCCAAATATCGTTCAATTATTAAGGCAAAATGGGTTTTGATTGGAAAA
GCAAAAGGCAAGAAACATGAAACATATGGTACATAAAAATACATTAAAGTAAAAGAAAAAGTGGT
AAAGTAGGAAGGCAATTATAAAGGAAGATGCTGTAAAATGTCTTCACTTATGGTCTTTGGTCTTT
CTTTATTACTAATATTCAGTTAAAGATGATATTTTATCCTAAAAAAGAATAATAGTACGTAAGAT
AGACTTATTAATCGTTTAAAGCAAATTATTTCTTTTGACTTCATAACTGATAAGATTCATGACAT
GATTTTGACAGGTTAAAATAGTAAGATGCTTATTT
Found at i:80240985 original size:36 final size:35
Alignment explanation
Indices: 80240910--80240992 Score: 84
Period size: 37 Copynumber: 2.4 Consensus size: 35
80240900 AATAATTTTC
*
80240910 GGAAAATA--TTTTTAAAAATTGAATTGATTTTAT
1 GGAAAATATTTTTTTAAAAATTGAATTGATTTTAG
* *
80240943 GGAAAATTGATTTTTTTAATATTTGAA-TGATTTT-G
1 GGAAAA-T-ATTTTTTTAAAAATTGAATTGATTTTAG
80240978 GGTAAAATATTTTTT
1 GG-AAAATATTTTTT
80240993 ATTGTTTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
33 6 0.14
34 8 0.19
35 4 0.10
36 11 0.26
37 13 0.31
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.49
Consensus pattern (35 bp):
GGAAAATATTTTTTTAAAAATTGAATTGATTTTAG
Found at i:80241262 original size:23 final size:23
Alignment explanation
Indices: 80241236--80241286 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
80241226 CAAGATAAAC
*
80241236 AAATACTAATA-TTTATATTATTA
1 AAATACTAATATTTTATACTA-TA
* *
80241259 AAATATTCATATTTTATACTATA
1 AAATACTAATATTTTATACTATA
80241282 AAATA
1 AAATA
80241287 TTTCTAACTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 16 0.67
24 8 0.33
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATACTAATATTTTATACTATA
Found at i:80249414 original size:17 final size:15
Alignment explanation
Indices: 80249392--80249425 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 15
80249382 ATTCCATTGC
80249392 TTCTTCTTCCGTTTTCT
1 TTCTTCTT-C-TTTTCT
80249409 TTCTTCTTCTTTTCT
1 TTCTTCTTCTTTTCT
80249424 TT
1 TT
80249426 TTGCTCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.71
Consensus pattern (15 bp):
TTCTTCTTCTTTTCT
Found at i:80264722 original size:42 final size:40
Alignment explanation
Indices: 80264676--80264757 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 40
80264666 CTTGTTCACC
*
80264676 ATAAATGA-ACTTAACAATCTTTATTCATGTTCAGTTTGTTTA
1 ATAAATGAGACTTAA-AATC-TTATTCATGTTCA-TTTATTTA
*
80264718 ATAAATGAGCCTTAAAATCTTATTCATGTTCATTTATTTA
1 ATAAATGAGACTTAAAATCTTATTCATGTTCATTTATTTA
80264758 GCTTGATAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
40 7 0.19
41 13 0.35
42 12 0.32
43 5 0.14
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (40 bp):
ATAAATGAGACTTAAAATCTTATTCATGTTCATTTATTTA
Found at i:80266163 original size:147 final size:147
Alignment explanation
Indices: 80265896--80266190 Score: 527
Period size: 147 Copynumber: 2.0 Consensus size: 147
80265886 TAAGATCTGC
* *
80265896 TAATTTTCCCTGAAACTATACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTTGGTTTAG
1 TAATTTTCCCTAAAACTATACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTGGGTTTAG
* *
80265961 GCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTATTCTGCGGTCTGACAGTTTCGACCCTTCT
66 GCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTATTCTGCGATCTGACAGTTTCGACCATTCT
80266026 TCACTAAGAATTAATTA
131 TCACTAAGAATTAATTA
80266043 TAATTTTCCCTAAAACTATACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTGGGTTTAG
1 TAATTTTCCCTAAAACTATACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTGGGTTTAG
* * *
80266108 GCAATAAGTATAGTTTATTCTTTAAATTTGCCCCTATTCTGCTATCTGACAGTTTCGACCATTCT
66 GCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTATTCTGCGATCTGACAGTTTCGACCATTCT
80266173 TCACTAAGAATTAATTA
131 TCACTAAGAATTAATTA
80266190 T
1 T
80266191 CTCATAGTAC
Statistics
Matches: 141, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
147 141 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (147 bp):
TAATTTTCCCTAAAACTATACTCATATATCTTCTTACCATAAAATTTTCAGAATTTTGGGTTTAG
GCAATAAGTATAGTTTATTCTTTAAAGTTACCCCTATTCTGCGATCTGACAGTTTCGACCATTCT
TCACTAAGAATTAATTA
Found at i:80271148 original size:48 final size:49
Alignment explanation
Indices: 80271081--80271225 Score: 163
Period size: 48 Copynumber: 3.0 Consensus size: 49
80271071 CGGATACTCA
* * *
80271081 GAAGTCTCGCACACTAAGTGCCAATATCATGGCCCTAAGCCAACTCAAT
1 GAAGTCTCGCACCCAAAGTGCCAATATCATGGCCCTAAGCCAAATCAAT
* * * *
80271130 -ATGTCTCGCACCCGAAGTGCTAATATCATGG-CCTAAATCCAAATCAAT
1 GAAGTCTCGCACCCAAAGTGCCAATATCATGGCCCT-AAGCCAAATCAAT
* * *
80271178 GAAG-CTCTCA-CTAAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT
1 GAAGTCTCGCACCCAAAGTGCCAATATCATGGCCCTAAGCCAAATCAAT
80271225 G
1 G
80271226 TATTCCCTAA
Statistics
Matches: 80, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
47 33 0.41
48 45 0.56
49 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (49 bp):
GAAGTCTCGCACCCAAAGTGCCAATATCATGGCCCTAAGCCAAATCAAT
Found at i:80273649 original size:5 final size:5
Alignment explanation
Indices: 80273639--80273693 Score: 67
Period size: 5 Copynumber: 10.6 Consensus size: 5
80273629 TGAAAATAAT
*
80273639 AAATA AAATA ATAATA AGATA AAAT- AAATAA AAATAA AAATA AAATA
1 AAATA AAATA A-AATA AAATA AAATA AAAT-A AAAT-A AAATA AAATA
80273686 AAATA AAA
1 AAATA AAA
80273694 ATTGGGTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
4 4 0.09
5 26 0.58
6 15 0.33
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:80273662 original size:16 final size:15
Alignment explanation
Indices: 80273633--80273693 Score: 72
Period size: 16 Copynumber: 3.9 Consensus size: 15
80273623 AATATCTGAA
80273633 AATAATAAATAAAAT
1 AATAATAAATAAAAT
80273648 AATAATAAGATAAAAT
1 AATAATAA-ATAAAAT
80273664 AAATAA-AAATAAAAAT
1 -AATAATAAAT-AAAAT
80273680 AA-AATAAAATAAAA
1 AATAAT-AAATAAAA
80273694 ATTGGGTTGC
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
14 2 0.05
15 16 0.39
16 18 0.44
17 5 0.12
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (15 bp):
AATAATAAATAAAAT
Found at i:80273680 original size:26 final size:25
Alignment explanation
Indices: 80273636--80273692 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
80273626 ATCTGAAAAT
* *
80273636 AATAAATAAAATAATAATAAGATAA
1 AATAAATAAAATAAAAATAAAATAA
80273661 AATAAATAAAAATAAAAATAAAATAA
1 AATAAAT-AAAATAAAAATAAAATAA
80273687 AATAAA
1 AATAAA
80273693 AATTGGGTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (25 bp):
AATAAATAAAATAAAAATAAAATAA
Found at i:80289837 original size:231 final size:230
Alignment explanation
Indices: 80289426--80289885 Score: 875
Period size: 231 Copynumber: 2.0 Consensus size: 230
80289416 ACACTTTTAA
80289426 AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
1 AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
80289491 AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
66 AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
*
80289556 CACAAATTCATTTAAAAATTTACATCATGCATGATAACTTAAAAAACATACAAATATAAAAGAAT
131 CACAAATTCATTTAAAAATTGACATCATGCATGATAACTTAAAAAACATACAAATATAAAAGAAT
80289621 AATAAAACACATGATAAGATATAATTTATAAAGGG
196 AATAAAACACATGATAAGATATAATTTATAAAGGG
80289656 AATTAATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
1 AATT-ATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATA
*
80289721 TAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
65 CAATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAA
* *
80289786 GCACAAATTCATTTAAAAATTGACATCATGCATGATAGCTTAAATAACATACAAATATAAAAGAA
130 GCACAAATTCATTTAAAAATTGACATCATGCATGATAACTTAAAAAACATACAAATATAAAAGAA
80289851 TAATAAAACACATGATAAGATATAATTTATAAAGG
195 TAATAAAACACATGATAAGATATAATTTATAAAGG
80289886 TAAAAACTAT
Statistics
Matches: 225, Mismatches: 4, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
230 4 0.02
231 221 0.98
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.31
Consensus pattern (230 bp):
AATTATGATGAATTAATGGACACATAATATAAGTTGACAAGTTTGTATAAAAACTAGGGATATAC
AATTATTTGAAATAAATATTGTAGAATAAAACATTTGAATTGAATAATATGCAAAATATTTTAAG
CACAAATTCATTTAAAAATTGACATCATGCATGATAACTTAAAAAACATACAAATATAAAAGAAT
AATAAAACACATGATAAGATATAATTTATAAAGGG
Found at i:80291714 original size:16 final size:16
Alignment explanation
Indices: 80291695--80291726 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
80291685 TTTATCTTAA
*
80291695 TTTATTTTTGTTTTTG
1 TTTATTTTGGTTTTTG
80291711 TTTATTTTGGTTTTTG
1 TTTATTTTGGTTTTTG
80291727 GTTTTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.00, G:0.16, T:0.78
Consensus pattern (16 bp):
TTTATTTTGGTTTTTG
Found at i:80294342 original size:512 final size:512
Alignment explanation
Indices: 80293360--80299028 Score: 9222
Period size: 512 Copynumber: 11.1 Consensus size: 512
80293350 ACCCTTTGTC
* * * * *
80293360 CAATCCTCATGGTCAAAACTTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTT-TTACGG
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAAC-G
* *
80293424 CCATAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCTGGTGAAAGCTAGGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
80293489 TCGGGTTTACTAGTCATTTCTTTAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
*
80293553 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATTAATTTTATGGTTTTAAATATTTTTTGGTT
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
*
80293618 AAAATAAATATTTTATTGAAAAATAAATT-AAATGGGGTTTCATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
*
80293682 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAAAAAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
*
80293747 ATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* *
80293812 CTTCTTTCCTTTCCAGACCAACAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
80293870 TAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
*
80293935 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTCGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
80294000 CGGGTTTACTACTCATTTGTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
*
80294065 ATATTCCAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* *
80294130 AAATAAATAATTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAAAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* * * * *
80294195 AAAATAGGTATATAATATTTCGAAAAAGAAAAATATTTTTACAAAAATATCACGAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
* * * *
80294260 TACTACTACCCCCATCCTTTTAAGCTGATACAAATTCTTCCACGGGAGTATCACCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
* *
80294325 CTCTTTCCATTCCAGACCACCAAATTCTACTTATCTTTGATAGAAGCTCCTCGATCA
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
** * *
80294382 CAATCCTAATTGTCCAAACCTACTTGTAATCATAAATTTTCCAAAGTATGTTGTGTTTGGAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* * *
80294447 CCTAAAAATAGGTCTACAAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAATTAAA
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
80294512 CGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
131 CGGGTTTACTAGTCATTTCTTT-AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* * * *
80294577 TATATTCTGGAAGATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* * *
80294642 AAAAAAAATATTTTATTGAAAAATAAAATAAAATGGGGTTTAATTAAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* ** *
80294707 CTAAATAGGTATACAATATTAAGGAAAATAAAAATATTTTTAAAAAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
**
80294772 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCATAGGAGTATCGCCCAATATTTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTT
* * * ** * *
80294837 CTTCTTTCCTTTCCAGACCACAAAATTCTGCCTATCTTTGATAGTTGCTCCGCGATCC
455 CCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
80294895 CAATCCTAAATGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGCTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
*
80294960 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCAGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
80295025 CGGGTTTACTACTCACTTCTTTAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATTGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
* * *
80295089 ATATTCCGAAAAATAACAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTGTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
*
80295154 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTTAGAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
80295219 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
* *
80295284 TACTAATACCCCTATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
* *
80295349 CTTTTTCCTTTCCAGACCACCAAATTCTGCTGATCTTTGATAGAAGCTCCTCGATCA
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * * *
80295406 CAATCCTAATTGTCCAAGCCTACTTCTAATCGCAAATTTTTCAAA-TAATGTTGTGTTTCTGAA-
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGT-ATGTTGTGTTTGT-AAC
* * *
80295469 GCCCTAAAAATAGGTTTACTAGTTTTGAGTAAGTTTATCGGGTTCGGGGCGAAAGCTAGGAGTTA
64 GCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTA
* * * *
80295534 ATCGAGTTTACTACTCATTTCTTTAAAAATATTAGTTAGCTTAATTTCATTTGAAAATCGGTAAA
129 ATCGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* *
80295599 TAATATTCCGGAATAT-AAAATA--TTTAGAGAAATAAATTTTATGGTTTTAAATATTTTTTGGT
194 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
*
80295661 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATACTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
*
80295726 ACTAAATAGGTATATAATATT-CTGAAAGATAAAAATATTTTTAGAAAAATATCACGAATATCAT
324 ACTAAATAGGTATATAATATTCCGGAAA-ATAAAAATATTTTTAGAAAAATATCACGAATATCAT
80295790 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
388 GAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATT
* *
80295855 TTCCTCTCTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAACCTCCTCGATCA
453 TTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
** *
80295915 CAATCCTAATTGTCCAAACCTACTTGTAATCTTAAATTTTCCAAAGTATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
80295980 CCTAAAAATAGGTCTACTGGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTATGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * *
80296045 CGGGTTTACAAGTCATTT-TTAAAAAAAAAATTAGTTAGCTTAATTTCATTTGAAAATCGGTAAA
131 CGGGTTTACTAGTCATTTCTT--TAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* * * * *
80296109 TAATATTCCGGAATATAAAAATATATTTATATAAATCAATTTTATGCTTTTAAATATTTTTTGGT
194 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
* *
80296174 AAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGATACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* *
80296239 ACTAAATAGGTATATAATATTCCAGAAAATAAAAATA-TTTTAGAAAAATATCATGAATATCATG
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
80296303 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
* *
80296368 TCCTTTTTCCTTTCAAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
*
80296427 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGCGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
*
80296492 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCTGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* *
80296557 CGGGTTTACTACTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATTGGTAAAT
131 CGGGTTTACTAGTCATTTCTTT-AAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* * * *
80296622 AATATTCCGGAAAATAACAATATTTATAGAGAAAACAATTTTATGGTTTTAAATATTTTTTGGTA
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
*
80296687 AAAATAAATATTTTATTGAAAAATAAATTGAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
*
80296752 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAAAATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
*
80296817 ATGCTAATACCCCCATCCTTTTAGGCTGACAC-AATTCCTTCCACGGGAGTATCGCCCAATATTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATT-CTTCCACGGGAGTATCGCCCAATATTT
* *
80296881 TCCTCTTTCCTTTCCAGACGATCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * *
80296940 CAATCCTAAATGTCCAAACCTACTTGTAATCACAAATTTTCCAAAGAATGTTGTGTTTGTGAA-G
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGT-AACG
* * * *
80297004 CCCTAAAAATAAGTCTACTAGTTTTGACTAAGTTTATC-GGTTCTGGGTGAAAACTAGGAGTTAA
65 CCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAA
* * * * * *
80297068 CCGAGTTTACTAGTCATTTCTTTAAAAAAAATAGTTAGCTTCATTTCATTCAAAAATTGGTAAAT
130 TCGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAAT
* * *
80297133 AATATTCCAGAATATAAAAATATTTTTAGCGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
195 AATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT
* *
80297198 AAAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGAGAAAAGTTACAATATTAA
260 AAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAA
* * **
80297262 CTAAAGAGGTATATAATATTCCAGAAAATGCAAATATTTTTAGAAAAATATCACGAATATCATGA
325 CTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGA
* *
80297327 ATACTAATACCCCCATCCTTTTAGGTTCACACAAATTCTTCCACGGGAGTATC-CCTCAATATTT
390 ATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCC-CAATATTT
80297391 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* * *
80297450 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCATAGTATGTTGTGTTTCTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
80297515 ACTGAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* **
80297580 CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCCTTTAAAAATTAGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
80297645 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTT-
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* *
80297709 AAA-AAATATTTTACTGAAAAATAAATTAAAATGGGGTTTCATTGAGAGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* * *
80297773 TAAAGAGGTATATAATATTCCGG--AA-AAAAATATATTTAGAAAAATATCACGAATATAATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
* * *
80297835 TACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCACGGGAGTATCCCCCAATATTTTT
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
** *
80297900 CTCTTTCCTTTCTGGACCACTAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
80297957 CAATCCTAATTGTCCAAACCTACTTCTAATCGCAAATTTTCCAAAGTATGTTATGTTTGTAACGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
80298022 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
*
80298087 CGGGTTTACTAGTCATTTTTTTAAAAAAA-TAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
131 CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
*
80298151 ATATTCCGGAAAATAACAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATA-TTTTTGGTTA
196 ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
* * *
80298215 AAATAAATATTTTAATGAAAAATAAATTAAAATGGGGTTTCATTGAGTGAAGTTACAATATTAAC
261 AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
* *
80298280 TAAATAGGTATATAATATTCTGGAAAATAAAAATA-TTTTAAAAAAATATCACGAATATCATGAA
326 TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
80298344 TACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
391 TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
* *
80298408 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATTTTTGATAGAAGCTCCTCAATCA
456 CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
** * * *
80298465 CAATCCTAATTGTCCAAACCTACTTGTAATCTTAAAATTTCCAAAGAATGTTGTGTTTGTAATGC
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
* *
80298530 CTTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTATGAGTTAAT
66 CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
* * * * * * *
80298595 CGGGTTTACAAGTCATTT-TTAAAAAAAAAATTAGTTAGCTTAATTTCATGTGAAAACCGATACA
131 CGGGTTTACTAGTCATTTCTT--TAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAA
* *
80298659 TAATATTCCGGAATATAAAAATATATTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
194 TAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGT
80298724 T-AAA-AAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
259 TAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTA
* *
80298787 ACTAAATAGGTATATAATATTCCGGAAAATAAAATTTTTTTTA-AAAAATATCACGAATATCATG
324 ACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATG
*
80298851 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATA-GT
389 AATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTT
*
80298915 TCCTTCTTTCCTTTCCAGAACACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
454 TCC-TCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
* *
80298975 CAATCCTAATTGTCCAAACCTACTTCTAATCGCAAACTTTCCAAAGTATGTTGT
1 CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGT
80299029 AACACCCCGA
Statistics
Matches: 4793, Mismatches: 328, Indels: 76
0.92 0.06 0.01
Matches are distributed among these distances:
505 9 0.00
506 88 0.02
507 380 0.08
508 256 0.05
509 578 0.12
510 852 0.18
511 862 0.18
512 931 0.19
513 830 0.17
514 7 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (512 bp):
CAATCCTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAGTATGTTGTGTTTGTAACGC
CCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGGGTGAAAGCTAGGAGTTAAT
CGGGTTTACTAGTCATTTCTTTAAAAAAATTAGTTAGCTTAATTTCATTTAAAAATCGGTAAATA
ATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGGTTTTAAATATTTTTTGGTTA
AAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTAATTGAGAGAAGTTACAATATTAAC
TAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAAATATCACGAATATCATGAA
TACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGGAGTATCGCCCAATATTTTC
CTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAGCTCCTCGATCA
Found at i:80296184 original size:20 final size:19
Alignment explanation
Indices: 80296159--80296202 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
80296149 TTTATGCTTT
80296159 TAAATATTTT-TTGGTAAAAA
1 TAAATATTTTATT-G-AAAAA
80296179 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
80296198 TAAAT
1 TAAAT
80296203 TAAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:80296188 original size:19 final size:20
Alignment explanation
Indices: 80296159--80296202 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
80296149 TTTATGCTTT
80296159 TAAATATTTTT-TGGTAAAAA
1 TAAATATTTTTATGG-AAAAA
*
80296179 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATGGAAAAA
80296198 TAAAT
1 TAAAT
80296203 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTATGGAAAAA
Found at i:80296696 original size:20 final size:19
Alignment explanation
Indices: 80296671--80296714 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
80296661 TTTATGGTTT
80296671 TAAATATTTT-TTGGTAAAAA
1 TAAATATTTTATT-G-AAAAA
80296691 TAAATATTTTATTGAAAAA
1 TAAATATTTTATTGAAAAA
80296710 TAAAT
1 TAAAT
80296715 TGAAATGGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.43
20 11 0.48
21 2 0.09
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (19 bp):
TAAATATTTTATTGAAAAA
Found at i:80296700 original size:19 final size:20
Alignment explanation
Indices: 80296671--80296714 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
80296661 TTTATGGTTT
80296671 TAAATATTTTT-TGGTAAAAA
1 TAAATATTTTTATGG-AAAAA
*
80296691 TAAATA-TTTTATTGAAAAA
1 TAAATATTTTTATGGAAAAA
80296710 TAAAT
1 TAAAT
80296715 TGAAATGGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (20 bp):
TAAATATTTTTATGGAAAAA
Found at i:80300082 original size:27 final size:27
Alignment explanation
Indices: 80300052--80300143 Score: 114
Period size: 27 Copynumber: 3.4 Consensus size: 27
80300042 ATTACCAAAG
* * *
80300052 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTACAAAATTATCATTT
* *
80300079 TACCCTCGATTTGCAAAATTACCATTT
1 TACCCTCGATTTACAAAATTATCATTT
80300106 TACCCTC-AGTTTACAAAATTATCATTT
1 TACCCTCGA-TTTACAAAATTATCATTT
*
80300133 TACGCTCGATT
1 TACCCTCGATT
80300144 GTGAAATTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.02
27 53 0.96
28 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTATCATTT
Found at i:80300097 original size:54 final size:54
Alignment explanation
Indices: 80300025--80300143 Score: 132
Period size: 54 Copynumber: 2.2 Consensus size: 54
80300015 ATTACTGAAA
* * * * * *
80300025 TACCCTTGACTTGTAAAATTACCAAAGTACCCTC-GATTTATAGAATTATCGTTT
1 TACCCTCGATTTGCAAAATTACCAAAGTACCCTCAG-TTTACAAAATTATCATTT
***
80300079 TACCCTCGATTTGCAAAATTACCATTTTACCCTCAGTTTACAAAATTATCATTT
1 TACCCTCGATTTGCAAAATTACCAAAGTACCCTCAGTTTACAAAATTATCATTT
*
80300133 TACGCTCGATT
1 TACCCTCGATT
80300144 GTGAAATTAC
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
54 53 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTGCAAAATTACCAAAGTACCCTCAGTTTACAAAATTATCATTT
Found at i:80300205 original size:27 final size:27
Alignment explanation
Indices: 80300175--80300270 Score: 81
Period size: 27 Copynumber: 3.6 Consensus size: 27
80300165 TGTAGGATAG
***
80300175 AATTACCAAAATACCACTGGTTTG-AGA
1 AATTACCAAAATACCACCAATTTGTA-A
* *
80300202 AATTACCGAAATACCCCCAATTTGTAA
1 AATTACCAAAATACCACCAATTTGTAA
**
80300229 AATTACCAAAATACC-CCTAATTTACAA
1 AATTACCAAAATACCACC-AATTTGTAA
80300256 AATTA-CAGAAATACC
1 AATTACCA-AAATACC
80300271 CTTGACTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 4 0.07
27 53 0.91
28 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCACCAATTTGTAA
Found at i:80300271 original size:27 final size:27
Alignment explanation
Indices: 80300201--80300271 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
80300191 CTGGTTTGAG
* **
80300201 AAATTACCGAAATACCCCCAATTTGTA
1 AAATTACAGAAATACCCCCAATTTACA
*
80300228 AAATTACCA-AAATACCCCTAATTTACA
1 AAATTA-CAGAAATACCCCCAATTTACA
80300255 AAATTACAGAAATACCC
1 AAATTACAGAAATACCC
80300272 TTGACTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 2 0.05
27 35 0.92
28 1 0.03
ACGTcount: A:0.46, C:0.25, G:0.04, T:0.24
Consensus pattern (27 bp):
AAATTACAGAAATACCCCCAATTTACA
Found at i:80301293 original size:25 final size:24
Alignment explanation
Indices: 80301257--80301326 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
80301247 AGGAAGTGCT
80301257 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTCTGCCCCAGTTTACC
* * *
80301281 GAAAAGGGATCTGCCACAGTTTATC
1 -AAAAGGGCTCTGCCCCAGTTTACC
*
80301306 AGAAAGGGCTTTGCCCCAGTT
1 A-AAAGGGCTCTGCCCCAGTT
80301327 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTCTGCCCCAGTTTACC
Found at i:80301339 original size:24 final size:24
Alignment explanation
Indices: 80301308--80301353 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
80301298 AGTTTATCAG
**
80301308 AAAGGGCTTTGCC-CCAGTTATTA
1 AAAGGGCTAGGCCTCCAGTTATTA
80301331 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTAGGCCTCCAGTTAT
80301354 ATGATAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 7 0.37
25 8 0.42
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (24 bp):
AAAGGGCTAGGCCTCCAGTTATTA
Found at i:80301533 original size:42 final size:42
Alignment explanation
Indices: 80301474--80301565 Score: 141
Period size: 42 Copynumber: 2.2 Consensus size: 42
80301464 TAGTCTCCCC
** *
80301474 AAATGGGCTTGCATACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATGTGATATTG
80301516 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
80301558 AAATGGGC
1 AAATGGGC
80301566 CTAAGGGCCA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 45 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATGTGATATTG
Found at i:80301624 original size:31 final size:31
Alignment explanation
Indices: 80301589--80301700 Score: 161
Period size: 31 Copynumber: 3.6 Consensus size: 31
80301579 CGTTTATAAT
*
80301589 AAAGGCTTCGACCCAGTAATATGATTTATGA
1 AAAGGCTTCGACCCAGTAATTTGATTTATGA
* *
80301620 AAAGGCTTCGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGACCCAGTAATTTGATTTATGA
* * * *
80301651 AATGGCTTTGGCCCAGTGATTTGATTTATGA
1 AAAGGCTTCGACCCAGTAATTTGATTTATGA
80301682 AAAGGCTTCGACCCAGTAA
1 AAAGGCTTCGACCCAGTAA
80301701 CCGTTAAACG
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 72 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATTTGATTTATGA
Found at i:80303641 original size:512 final size:512
Alignment explanation
Indices: 80302454--80306428 Score: 6499
Period size: 512 Copynumber: 7.8 Consensus size: 512
80302444 GGGTGTTACA
* * * *
80302454 TATGTTGTGTTTGTAAAGCCCTAAAAATAGGTCTCCTAGTTTTGGGTAAGTTTATCGGGTTCCGA
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
80302519 GCGAAAGCTAGGAGTTAATCGGGTTTACTAGTAATTTCTTT-AAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* *
80302583 AATTTAAAAATCGGTAAATAATATTCCGGAATATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* ***
80302648 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAAGTAAAATGTTTTTTCATTG
196 TTTT-AATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
80302713 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTACGGAAAATAAAAATATTTTTAAAAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
*
80302778 AATATCACGAATATCATGAATACTAATACCCCAATCCTTTTAGGCTGACACAAATTCTTCCACGG
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
*
80302843 GAGTATCGCCCAATATTTTCCTCTTTCCATTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
390 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
*
80302908 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATTACAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* *
80302966 TATGTTGTGTTTATAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTA-CTGGGTTACG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATC-GGGTTCCG
* *
80303030 GGTGAAAGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAATTAATTAGCTTAATT
65 GGTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATT
* *
80303095 TCATTTAAAAATCTGTAAATAATATTCCGGAAAATAAAAATATTTTTTGAGAAATCAATTTTATG
130 TCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATG
* * * *
80303160 GTTTTAATTTTTTTTGGTTAAAATAAATATTTCATTGAAAAAAAAATTAAAATGGGGTTTCATTA
195 GTTTTAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* * *
80303225 AGGGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGAAATTAAAAATATTTTTAGAAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* * * *
80303290 AATATCATGAACATCATGAATACTAATA-CCCCATCCTTTTAGGCTGACACAAATTCTTCCAAGC
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* * *
80303354 GAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTTTGCTTATCTTTGATAAAA
390 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
80303419 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * * *
80303477 TATGTAGTGTTTGTAATGCCTTAAAAATAGGTCTACTAGTTTTGCGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
80303542 GTGAATGCTAGGAGTTAATCGGGTTTACTACTCATTTCTTTAAAAAAAAATTAGTTAGCTTAATT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTT-AAAAAAAATTAGTTAGCTTAATT
* *
80303607 TCATTTAAAAATCGATAAATAATATTCCGGAAAATAAAAATATATTTAGAGAAATCAATTTTATG
130 TCATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATG
* * *
80303672 GTTTTAAATATTTTTTGGTTAAAATAAATATTTTATTCAAAAATAAATTAAACTAGGGTTTCATT
195 GTTTT-AATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATT
80303737 --GA-AAG--A-AATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
259 GAGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAA
* * *
80303796 AGATATCACAAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCAAG
324 AAATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACG
*
80303861 GGAGTATCGCCCAATATTTTTCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
389 GGAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGA
* * * *
80303926 AGCTCCTAGATCACAATCCTAATTGTCTAAACCTTCTTGTAAT-AGCAAATTTTCCAATG
454 AGCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCA-CAAATTTTCCAAAG
* * *
80303985 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGCTCTGT
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
80304050 GTGAAAACTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
80304115 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* *
80304180 TTTTAA-ATATTTTTGGTTAAAATAAATATTTTATTGAAAATTAAATTAAAATGGAGTTTCATTG
196 TTTTAATAT-TTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
*
80304244 AGAGAAGTTACAATATTAACTAAATAGATATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* * *
80304309 AATATAACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCACGA
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* * *
80304374 GAGTATAGCCCAATATTTTTCTCTTTCCTTTTCAGACCACCAAATTCTGCTTATCTTTGATAGAA
390 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
*
80304439 GCTCCTCGATCACAATCCTAACTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* * * *
80304497 AATGTTGTGTTTGTAAAGCCCTAAAAATTGGTCTACTAGTTTTGAGTAATTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* *
80304562 GTGAAAGCTAGCAGTTAATCGGGATTACTAGTCATTTCTTT-AAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * * *
80304626 CATTTAAAAATCGGTAAATAATATTCCAGAAGATAAAAATATTTTTAGAGATATCAATTCTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
*
80304691 TTTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAATTAAATTAAAATGGGGTTTCATTG
196 TTTT-AATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
80304756 AGAGAAGTTACAATATTAACTAAATTGGTATATAATATTCCTGAAAATAAAAATATTTTTAGAAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* * *
80304821 AATATCACGAATATCAGGAATACTAATACCCCCATCCTTTTAGGCTCACACAAATTCTTCCAGGG
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
80304886 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
390 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* *
80304951 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCATAAATTTTCCATAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
80305009 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
80305074 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTT-TTTAAAAAAAAATAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
*
80305138 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAACAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
*
80305203 TTTTAA-ATATTTTTGGTTAAAATAAATATTTTGTTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAATAT-TTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* *
80305267 AGTGAAGTTACAATATTAACTAAATAGGTATATAATATTCTGGAAAATAAAAATA-TTTTA-AAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
*
80305330 AATATCACGAATATCATGAATACTAATA-CCCCATCCTTTTAGGCTCACACAAATTCTTCCACGG
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
*
80305394 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCA-ACCACCAAATTCTGCTTAT-TTTTATAGAA
390 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
**
80305457 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCTTAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* *
80305515 TATGTTGTGTTTGTAATGCCTTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
* * *
80305580 GTGAAAGCTATGAGTTAATCGGGTTTACAAGTCATTT-TTAAAAAAAAATTAGTTAGCTTAATTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * * *
80305644 CATTTAAAAATTGGTAAATTATATTACAGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
80305709 TTTTAA-ATATTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
196 TTTTAATAT-TTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
* * * *
80305773 AGAGAAGTTGCAATATTAACTAATTAGGTATATAAAATTACGGAAAATAAAAATATTTTTAGAAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
*
80305838 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACATAAATTCTTCCACGG
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
* * *
80305903 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCATATTTTTTATAGAA
390 GAGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAA
* * *
80305968 GCCCCTCGATCACAATCTTAATTGTCCAAACCTACTTGTAATCGCAAATTTTCCAAAG
455 GCTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
* *
80306026 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTAGTAGTTTTGAGTAAGTTTATCAGGTTCCGG
1 TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
*
80306091 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCA--T-TTTAAAAAAAA-TAGTTAGCTTACTTT
66 GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
* * * *
80306152 CGTTTAAAAATCGATAAATAATATTCCGAAAAATAAAAATATTTTTAGATAAATCAATTTTATGG
131 CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
* * * * *
80306217 ATTTAAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAGTAAAAATGAGGTTTAATTG
196 -TTTTAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTG
80306282 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
260 AGAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAA
* *
80306347 AATATCACAAATATCATGAATACTAATACCCCCATCCTTTTAGGCTAACACAAATTCTTCCAC-G
325 AATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGG
80306411 GAGTATCGCCCAATATTT
390 GAGTATCGCCCAATATTT
80306429 CCTATTAGTT
Statistics
Matches: 3232, Mismatches: 205, Indels: 56
0.93 0.06 0.02
Matches are distributed among these distances:
505 2 0.00
506 411 0.13
507 192 0.06
508 439 0.14
509 289 0.09
510 30 0.01
511 605 0.19
512 1121 0.35
513 143 0.04
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.36
Consensus pattern (512 bp):
TATGTTGTGTTTGTAACGCCCTAAAAATAGGTCTACTAGTTTTGAGTAAGTTTATCGGGTTCCGG
GTGAAAGCTAGGAGTTAATCGGGTTTACTAGTCATTTCTTTAAAAAAAATTAGTTAGCTTAATTT
CATTTAAAAATCGGTAAATAATATTCCGGAAAATAAAAATATTTTTAGAGAAATCAATTTTATGG
TTTTAATATTTTTTGGTTAAAATAAATATTTTATTGAAAAATAAATTAAAATGGGGTTTCATTGA
GAGAAGTTACAATATTAACTAAATAGGTATATAATATTCCGGAAAATAAAAATATTTTTAGAAAA
ATATCACGAATATCATGAATACTAATACCCCCATCCTTTTAGGCTGACACAAATTCTTCCACGGG
AGTATCGCCCAATATTTTCCTCTTTCCTTTCCAGACCACCAAATTCTGCTTATCTTTGATAGAAG
CTCCTCGATCACAATCCTAATTGTCCAAACCTACTTGTAATCACAAATTTTCCAAAG
Found at i:80305234 original size:18 final size:19
Alignment explanation
Indices: 80305206--80305248 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
80305196 TTTATGGTTT
80305206 TAAATATTTTTGGTT-AAAA
1 TAAATATTTTT-GTTAAAAA
80305225 TAAATA-TTTTGTTGAAAAA
1 TAAATATTTTTGTT-AAAAA
80305244 TAAAT
1 TAAAT
80305249 TAAAATGGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.14
18 4 0.18
19 15 0.68
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (19 bp):
TAAATATTTTTGTTAAAAA
Found at i:80308064 original size:37 final size:37
Alignment explanation
Indices: 80308023--80308096 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
80308013 ACAGGGGCTG
80308023 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
80308060 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
80308097 CAATTTGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.35
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:80308267 original size:50 final size:50
Alignment explanation
Indices: 80308206--80308313 Score: 162
Period size: 50 Copynumber: 2.2 Consensus size: 50
80308196 TACCTAAATG
* * * *
80308206 ATGTGCTCAACTCTGCTCAGTTCAACAGCCTTTCGGATTTATTTTGACTA
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
* *
80308256 ATGTGCTCAACTCTACTTAGTTCAACAGCCTTTCAGATTTATTCTAACTG
1 ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
80308306 ATGTGCTC
1 ATGTGCTC
80308314 CGTTTTGATT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (50 bp):
ATGTGCTCAACTCTACTCAGTTCAACAGCCTTTCAGATTTATTCTAACTA
Found at i:80317010 original size:19 final size:19
Alignment explanation
Indices: 80316986--80317064 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
80316976 AATCTTTAAG
80316986 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80317005 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80317024 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
80317041 GATATGTAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
80317062 GAT
1 GAT
80317065 CTTGTAATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 29 0.53
21 9 0.16
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80317032 original size:36 final size:37
Alignment explanation
Indices: 80316992--80317064 Score: 121
Period size: 36 Copynumber: 2.0 Consensus size: 37
80316982 TAAGGATATG
80316992 CAATCTTAGATATGATATGCAATCTT-AGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAAGATATGATA
*
80317028 CAATCTTAGATATGATATGTAATCTTGAAGATATGAT
1 CAATCTTAGATATGATATGCAATCTT-AAGATATGAT
80317065 CTTGTAATCT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 25 0.74
38 9 0.26
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (37 bp):
CAATCTTAGATATGATATGCAATCTTAAGATATGATA
Found at i:80317073 original size:22 final size:21
Alignment explanation
Indices: 80316986--80317081 Score: 82
Period size: 19 Copynumber: 4.9 Consensus size: 21
80316976 AATCTTTAAG
*
80316986 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
80317005 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
*
80317024 GATA--CAATCTT--AGATAT
1 GATATGTAATCTTGAAGATAT
80317041 GATATGTAATCTTGAAGATAT
1 GATATGTAATCTTGAAGATAT
* *
80317062 GATCTTGTAATCTTGGAGAT
1 GAT-ATGTAATCTTGAAGAT
80317082 TTAATTTGTA
Statistics
Matches: 69, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.25
19 29 0.42
21 9 0.13
22 14 0.20
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (21 bp):
GATATGTAATCTTGAAGATAT
Found at i:80318091 original size:22 final size:22
Alignment explanation
Indices: 80318039--80318083 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
80318029 AGATTTCAAA
80318039 ACATAGTGTCCTAACTTACTGG
1 ACATAGTGTCCTAACTTACTGG
80318061 ACATAGTGTCCTAACTTACTGG
1 ACATAGTGTCCTAACTTACTGG
80318083 A
1 A
80318084 TATGGTGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (22 bp):
ACATAGTGTCCTAACTTACTGG
Found at i:80322700 original size:15 final size:14
Alignment explanation
Indices: 80322680--80322727 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 14
80322670 CTATTTCAAA
80322680 AAAAAAAGAAAAAGG
1 AAAAAAA-AAAAAGG
80322695 AAAAAAAATAAAA-G
1 AAAAAAAA-AAAAGG
80322709 AAAAAGAAAAAAATGG
1 AAAAA-AAAAAAA-GG
80322725 AAA
1 AAA
80322728 GGCCAAGGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 11 0.38
15 14 0.48
16 4 0.14
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAAAAGG
Found at i:80322728 original size:20 final size:21
Alignment explanation
Indices: 80322677--80322721 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
80322667 CTTCTATTTC
80322677 AAAAAA-AAAAGAAAAAGGAA
1 AAAAAATAAAAGAAAAAGGAA
80322697 AAAAAATAAAAGAAAAA-GAA
1 AAAAAATAAAAGAAAAAGGAA
80322717 AAAAA
1 AAAAA
80322722 TGGAAAGGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (21 bp):
AAAAAATAAAAGAAAAAGGAA
Found at i:80323745 original size:84 final size:84
Alignment explanation
Indices: 80323604--80324226 Score: 911
Period size: 84 Copynumber: 7.4 Consensus size: 84
80323594 AAAATTCAGT
80323604 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
80323669 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
80323688 GCCTTAATCCCCTAAGTAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAACAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
80323753 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
*
80323772 GCCTTAATCCCCTAAGCGGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
80323837 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * *
80323856 ACCTTAATCCCTTAAGCGGTAGGGTAACAGGTTAGATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
80323921 TAGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * * *
80323940 GCCTTAATACCCTAAACAGTAGGGTAATAGG-----TTCGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
80324000 CGAAGCAGATCGACGACGACTC
66 TGGAGCAGATCGA--A-GACTC
* *
80324022 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAGATCTTATCTCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
80324087 TGGAGCAGATCGAAGACCC
66 TGGAGCAGATCGAAGACTC
* * *
80324106 GTCTTAATCCCCTAAACAGTAGGGTAACAGGTTAAATTTGCAAATCTTA--TCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
80324169 CGGAGTAGATCAAAGAAGA-TGC
66 TGGAGCAGATC---GAAGACT-C
* *
80324191 TCCTTAACCCCCTAAGCAGTAGGGTAACAGGTTAAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
80324227 GTAAAACAGA
Statistics
Matches: 487, Mismatches: 40, Indels: 23
0.89 0.07 0.04
Matches are distributed among these distances:
79 38 0.08
81 1 0.00
82 55 0.11
84 317 0.65
85 39 0.08
87 37 0.08
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:80326344 original size:19 final size:19
Alignment explanation
Indices: 80326317--80326414 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
80326307 AATCTTTAAG
*
80326317 GATAAGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80326336 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80326355 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80326372 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
80326391 GATATGAAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
80326412 GAT
1 GAT
80326415 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 17 0.23
19 47 0.64
21 9 0.12
ACGTcount: A:0.40, C:0.09, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80326347 original size:36 final size:36
Alignment explanation
Indices: 80326323--80326394 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
80326313 TAAGGATAAG
*
80326323 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATAGGATA
*
80326359 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATAGGATA
80326395 TGAAATCTTG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATAGGATA
Found at i:80326353 original size:14 final size:15
Alignment explanation
Indices: 80326336--80326392 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
80326326 TCTTAGATAT
80326336 GATATG-CAATCTTA
1 GATATGACAATCTTA
80326350 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
80326367 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
80326386 GATATGA
1 GATATGA
80326393 TATGAAATCT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:80331661 original size:16 final size:15
Alignment explanation
Indices: 80331630--80331681 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
80331620 CTTCTATTTC
*
80331630 AAAAAAAAG-GAAA-
1 AAAAAAAAGAAAAAG
*
80331643 AAAGAAAAGAAAAAG
1 AAAAAAAAGAAAAAG
*
80331658 AAAAAAAAATAAAAAG
1 -AAAAAAAAGAAAAAG
80331674 AAAAAAAA
1 AAAAAAAA
80331682 AAATGGAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 8 0.25
14 3 0.09
15 8 0.25
16 13 0.41
ACGTcount: A:0.87, C:0.00, G:0.12, T:0.02
Consensus pattern (15 bp):
AAAAAAAAGAAAAAG
Found at i:80331682 original size:16 final size:16
Alignment explanation
Indices: 80331641--80331682 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
80331631 AAAAAAAGGA
80331641 AAAAAGAAAAGAAAAAG
1 AAAAA-AAAAGAAAAAG
*
80331658 AAAAAAAAATAAAAAG
1 AAAAAAAAAGAAAAAG
80331674 AAAAAAAAA
1 AAAAAAAAA
80331683 AATGGAGAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.88, C:0.00, G:0.10, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAGAAAAAG
Found at i:80331683 original size:11 final size:11
Alignment explanation
Indices: 80331630--80331683 Score: 65
Period size: 11 Copynumber: 4.8 Consensus size: 11
80331620 CTTCTATTTC
*
80331630 AAAAAAAAGGA
1 AAAAAAAAAGA
80331641 AAAAAGAAAAGA
1 AAAAA-AAAAGA
80331653 AAAAGAAAAA-A
1 AAAA-AAAAAGA
*
80331664 AAATAAAAAGA
1 AAAAAAAAAGA
80331675 AAAAAAAAA
1 AAAAAAAAA
80331684 ATGGAGAGGC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
10 5 0.14
11 18 0.49
12 13 0.35
13 1 0.03
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:80332748 original size:43 final size:44
Alignment explanation
Indices: 80332576--80332886 Score: 237
Period size: 43 Copynumber: 7.1 Consensus size: 44
80332566 CAAAGAAACA
80332576 AGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGC
* * * * **
80332621 AGATCT-G-ATACTCCTGTGCTTACAGCGAACAGATCGAAGATTTC
1 AGATTTGGCAT-C-CCTGTGTTTATAGGGAACAGATCGAAGATAGC
* *
80332665 AGCA--TGGCATCCCTGTGTTTATAAGGAACA-AGTTGAAGATAG-
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
80332707 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * * * ***
80332751 AGATCTGACGT-TCT-TGCTTACAGCGAAACAAATCAAAGATTTT
1 AGATTTGGCATCCCTGTGTTTATAG-GGAACAGATCGAAGATAGC
** * *
80332794 A-ACATGGCATCCCTATGTTTATAGGGAAC-GAGTTGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
* *
80332837 AGATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGC
80332883 AGAT
1 AGAT
80332887 CTGATTTTCG
Statistics
Matches: 201, Mismatches: 47, Indels: 35
0.71 0.17 0.12
Matches are distributed among these distances:
41 1 0.00
42 16 0.08
43 88 0.44
44 66 0.33
45 21 0.10
46 9 0.04
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:80332855 original size:130 final size:128
Alignment explanation
Indices: 80332576--80332890 Score: 461
Period size: 130 Copynumber: 2.4 Consensus size: 128
80332566 CAAAGAAACA
80332576 AGATTTGGCATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTGATACTCCTGTGCT
1 AGATTTGGCATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGCAGATCTG--ACTCCTGTGCT
* * * *
80332641 TACAGCGAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAAGGAACAAGTTGAAGATA
63 TACAGCGAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGATA
80332706 G
128 G
*
80332707 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACGTTCT-TGCTTA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGAC-TCCTGTGCTTA
* * *
80332771 CAGCGAAACAAATCAAAGATTTTAACATGGCATCCCTATGTTTATAGGGAACGAGTTGAAGATAG
65 CAGCG-AACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGATAG
* *
80332836 CAGATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCTGA
1 -AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAG--ATAGCAGATCTGA
80332891 TTTTCGGATG
Statistics
Matches: 169, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
128 13 0.08
129 55 0.33
130 61 0.36
131 27 0.16
132 13 0.08
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (128 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGCAGATCTGACTCCTGTGCTTAC
AGCGAACAAATCAAAGATTTCAACATGGCATCCCTATGTTTATAAGGAACAAGTTGAAGATAG
Found at i:80333253 original size:86 final size:87
Alignment explanation
Indices: 80333153--80333428 Score: 262
Period size: 86 Copynumber: 3.2 Consensus size: 87
80333143 TCTCACACCA
* * *
80333153 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGGTCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAAGTACATAGCAGATCT
80333218 AACCTTCAGATG-TTTATACTG
66 AACCTTCAGATGATTTATACTG
* *** * *
80333239 AAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGGAACAAATCGAAG-ACATAG
1 AAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG-A-GAA-C-AAGTACATAG
* * * * * * **
80333298 CAGATTTGACTTTCGGATGTTCTTACACCA
59 CAGATCTAACCTTCAGATGAT-TTATACTG
*
80333328 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAAATACATAGCAGATCT
1 AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAAGTACATAGCAGATCT
80333393 AACCTTCAGATGATTT-TACTG
66 AACCTTCAGATGATTTATACTG
80333414 AAGCAGATCCAAGAT
1 AAGCAGATCCAAGAT
80333429 GATTTGGCAT
Statistics
Matches: 144, Mismatches: 31, Indels: 30
0.70 0.15 0.15
Matches are distributed among these distances:
82 8 0.06
83 2 0.01
84 7 0.05
85 2 0.01
86 33 0.23
87 25 0.17
88 26 0.18
89 22 0.15
90 2 0.01
91 7 0.05
92 2 0.01
93 8 0.06
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (87 bp):
AAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAACAAGTACATAGCAGATCT
AACCTTCAGATGATTTATACTG
Found at i:80333318 original size:87 final size:87
Alignment explanation
Indices: 80333047--80333525 Score: 329
Period size: 87 Copynumber: 5.5 Consensus size: 87
80333037 AACTCTAACA
*
80333047 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
** *
80333112 TGAAGACATAGTAGATTTGACT
66 CAAAGACATAGCAGATTTGACT
* ** * *** *
80333134 TTCGGATGTTCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG
1 TTCAGATGTT-T-ACACTGAAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGG
* * * * * * *
80333196 ---AGAGC-AGGTACATAGCAGGTCTAACC
59 AACAAATCAAAG-ACATAGCAGATTTGACT
*
80333222 TTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
*
80333287 CGAAGACATAGCAGATTTGACT
66 CAAAGACATAGCAGATTTGACT
* ** * *** *
80333309 TTCGGATGTTCTTACACCAAAGCAGATCCAAGATAACAGATCTGGCA-TC-TCCATTT-CGACGG
1 TTCAGATG-T-TTACACTGAAGCAGATCCAAGAT----GATTTGGCATTCTTGTGTTTAC-AAGG
* * * * *
80333371 -A-GAA-CAAATACATAGCAGATCTAACC
59 AACAAATCAAAGACATAGCAGATTTGACT
* * * *
80333397 TTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAGGAGCAAA
1 TTCAGATG-TTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAA
*
80333461 TCAAAGACATAGCAGATTTGGCT
65 TCAAAGACATAGCAGATTTGACT
* * * *
80333484 TTCACATGTTTACGCTGAAACAGATCTAAGATGATTTGGCAT
1 TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCAT
80333526 CTCTGTATTG
Statistics
Matches: 290, Mismatches: 73, Indels: 58
0.69 0.17 0.14
Matches are distributed among these distances:
82 16 0.06
83 3 0.01
84 13 0.04
85 2 0.01
86 40 0.14
87 87 0.30
88 52 0.18
89 40 0.14
90 3 0.01
91 14 0.05
92 4 0.01
93 16 0.06
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (87 bp):
TTCAGATGTTTACACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGGAACAAAT
CAAAGACATAGCAGATTTGACT
Found at i:80333338 original size:175 final size:175
Alignment explanation
Indices: 80333040--80333486 Score: 761
Period size: 175 Copynumber: 2.6 Consensus size: 175
80333030 CAGAAAGAAC
*
80333040 TCTAACATTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
1 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
* *
80333105 AACAAATTGAAGACATAGTAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
66 AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
* ** *
80333170 CAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACATAGCAGG
131 CAGATCTGGCATCTCCATTTCGACGGAGAACAAATACATAGCAGA
80333215 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
1 TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
*
80333280 AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTTACACCAAAGCAGATCCAAGATAA
66 AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
80333345 CAGATCTGGCATCTCCATTTCGACGGAGAACAAATACATAGCAGA
131 CAGATCTGGCATCTCCATTTCGACGGAGAACAAATACATAGCAGA
* *
80333390 TCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTCACAAG
1 TCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAG
* * *
80333454 GAGCAAATCAAAGACATAGCAGATTTGGCTTTC
65 GAACAAATCGAAGACATAGCAGATTTGACTTTC
80333487 ACATGTTTAC
Statistics
Matches: 258, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
175 255 0.99
176 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (175 bp):
TCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTACAAGG
AACAAATCGAAGACATAGCAGATTTGACTTTCGGATGTTCTCACACCAAAGCAGATCCAAGATAA
CAGATCTGGCATCTCCATTTCGACGGAGAACAAATACATAGCAGA
Found at i:80334003 original size:19 final size:19
Alignment explanation
Indices: 80333956--80334015 Score: 88
Period size: 17 Copynumber: 3.2 Consensus size: 19
80333946 AATCTTTAAG
80333956 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80333975 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
80333992 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
80334013 GAT
1 GAT
80334016 CTTGTAATCT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.46
19 11 0.30
21 9 0.24
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:80340312 original size:43 final size:42
Alignment explanation
Indices: 80340265--80340363 Score: 137
Period size: 42 Copynumber: 2.3 Consensus size: 42
80340255 TCTCAGACGT
*
80340265 GGTCTTACATGTAATCAAATATCGATGCC-ACTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATA-CGATGCCGA-TGTCCCAGACAG
** *
80340308 GGTCTTACACAAAATCAAATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATACGATGCCGATGTCCCAGACAG
80340350 GGTCTTACACGTAA
1 GGTCTTACACGTAA
80340364 ATCATAAGTT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
42 30 0.61
43 19 0.39
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATACGATGCCGATGTCCCAGACAG
Found at i:80340366 original size:43 final size:42
Alignment explanation
Indices: 80340258--80340403 Score: 145
Period size: 43 Copynumber: 3.4 Consensus size: 42
80340248 GCCAACATCT
* *
80340258 CAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACTGTCC
1 CAGACATGGTCTTACACGTAAATCAAATA-CGATGCCA-TGTCC
* *
80340301 CAGACAGGGTCTTACAC-AAAATCAAATACGATGCCGATGTCC
1 CAGACATGGTCTTACACGTAAATCAAATACGATGCC-ATGTCC
* *
80340343 CAGACATGGTCTTACACGTAAATCATAAGT-TGATGCCAACGTCC
1 CAGACATGGTCTTACACGTAAATCA-AA-TACGATGCC-ATGTCC
* *
80340387 CAAACCTGGTCTTACAC
1 CAGACATGGTCTTACAC
80340404 AATAACTCAT
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
42 28 0.32
43 30 0.34
44 28 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (42 bp):
CAGACATGGTCTTACACGTAAATCAAATACGATGCCATGTCC
Found at i:80356455 original size:18 final size:17
Alignment explanation
Indices: 80356422--80356460 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
80356412 TTGTATAAAT
80356422 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
80356440 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
80356457 TGTG
1 TGTG
80356461 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:80356592 original size:8 final size:8
Alignment explanation
Indices: 80356579--80356607 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
80356569 CACTAGAGAC
80356579 CAGTGTTA
1 CAGTGTTA
80356587 CAGTGTTA
1 CAGTGTTA
80356595 CAGTGTTA
1 CAGTGTTA
80356603 CAGTG
1 CAGTG
80356608 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:80356721 original size:23 final size:23
Alignment explanation
Indices: 80356694--80356766 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
80356684 AGTGTTATTG
80356694 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
80356717 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
80356740 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
80356763 ATCA
1 ATCA
80356767 ATGTGGCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:80360356 original size:5 final size:5
Alignment explanation
Indices: 80360346--80360384 Score: 53
Period size: 5 Copynumber: 8.0 Consensus size: 5
80360336 ATAGAAGATA
* *
80360346 TTATT TTATT TTGTT TTATT AT-TT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT TTATT TTATT TTATT
80360385 ATTTTAGGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
4 3 0.10
5 26 0.90
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:80360373 original size:19 final size:19
Alignment explanation
Indices: 80360344--80360389 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
80360334 AAATAGAAGA
*
80360344 TATTA-TTTTATTTTGTTT
1 TATTATTTTTATTTTATTT
80360362 TATTATTTTTATTTTATTT
1 TATTATTTTTATTTTATTT
80360381 TATTATTTT
1 TATTATTTT
80360390 AGGATTAACC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (19 bp):
TATTATTTTTATTTTATTT
Found at i:80362241 original size:8 final size:8
Alignment explanation
Indices: 80362228--80362256 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
80362218 CACTAGAGAC
80362228 CAGTGTTA
1 CAGTGTTA
80362236 CAGTGTTA
1 CAGTGTTA
80362244 CAGTGTTA
1 CAGTGTTA
80362252 CAGTG
1 CAGTG
80362257 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:80362370 original size:23 final size:23
Alignment explanation
Indices: 80362343--80362415 Score: 128
Period size: 23 Copynumber: 3.2 Consensus size: 23
80362333 AGTGTTATTG
80362343 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
80362366 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
80362389 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
80362412 ATCA
1 ATCA
80362416 ATGTGGCACT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:80367123 original size:11 final size:11
Alignment explanation
Indices: 80367107--80367133 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
80367097 ACTACTTAGT
80367107 AAGCTTTCGTA
1 AAGCTTTCGTA
80367118 AAGCTTTCGTA
1 AAGCTTTCGTA
80367129 AAGCT
1 AAGCT
80367134 AAACATGTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (11 bp):
AAGCTTTCGTA
Found at i:80368608 original size:17 final size:17
Alignment explanation
Indices: 80368576--80368610 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
80368566 ATTAAAAATT
*
80368576 AAAAATTGTTAATTACA
1 AAAAATTGTGAATTACA
*
80368593 AAAAATTGTGATTTACA
1 AAAAATTGTGAATTACA
80368610 A
1 A
80368611 GCCTAATAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.51, C:0.06, G:0.09, T:0.34
Consensus pattern (17 bp):
AAAAATTGTGAATTACA
Found at i:80378231 original size:24 final size:26
Alignment explanation
Indices: 80378181--80378232 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
80378171 ATAGTTATAA
* * *
80378181 TAAAAAAATTATAATAATTAATGTTT
1 TAAAAAAATTATAAAAACTAATATTT
80378207 TAAAAAAATTA-AAAAACT-ATATTT
1 TAAAAAAATTATAAAAACTAATATTT
80378231 TA
1 TA
80378233 GATTATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 7 0.30
25 5 0.22
26 11 0.48
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (26 bp):
TAAAAAAATTATAAAAACTAATATTT
Found at i:80380953 original size:92 final size:92
Alignment explanation
Indices: 80380812--80380996 Score: 361
Period size: 92 Copynumber: 2.0 Consensus size: 92
80380802 TTGGTCACGG
*
80380812 TCTCTTCAGCAATATCTTTTTTTATATTTTTTTAATTTTTATTTTCAATGCACTATATTTTCTTT
1 TCTCTTCAGCAATATCTTTTTATATATTTTTTTAATTTTTATTTTCAATGCACTATATTTTCTTT
80380877 GAAGACTGTAATGGTTCTTGTTTTAGT
66 GAAGACTGTAATGGTTCTTGTTTTAGT
80380904 TCTCTTCAGCAATATCTTTTTATATATTTTTTTAATTTTTATTTTCAATGCACTATATTTTCTTT
1 TCTCTTCAGCAATATCTTTTTATATATTTTTTTAATTTTTATTTTCAATGCACTATATTTTCTTT
80380969 GAAGACTGTAATGGTTCTTGTTTTAGT
66 GAAGACTGTAATGGTTCTTGTTTTAGT
80380996 T
1 T
80380997 TAGTTTGTTT
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.56
Consensus pattern (92 bp):
TCTCTTCAGCAATATCTTTTTATATATTTTTTTAATTTTTATTTTCAATGCACTATATTTTCTTT
GAAGACTGTAATGGTTCTTGTTTTAGT
Found at i:80386678 original size:13 final size:13
Alignment explanation
Indices: 80386652--80386686 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
80386642 TGGGCCCACA
*
80386652 TGCCCGTATGGGT
1 TGCCCGTGTGGGT
*
80386665 TGCTCGTGTGGGT
1 TGCCCGTGTGGGT
80386678 TGCCCGTGT
1 TGCCCGTGT
80386687 AGGCCCATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.03, C:0.23, G:0.40, T:0.34
Consensus pattern (13 bp):
TGCCCGTGTGGGT
Found at i:80394800 original size:40 final size:41
Alignment explanation
Indices: 80394727--80394820 Score: 131
Period size: 40 Copynumber: 2.3 Consensus size: 41
80394717 AGCTACTCGT
*
80394727 TCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 TCAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCA
* *
80394768 -CAAATGCCTTCGGGACTTAACCTGGATT-TAGTAACTCGCA
1 TCAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCA
80394808 TC-AATGCCTTCGG
1 TCAAATGCCTTCGG
80394821 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
40 45 0.94
41 3 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.27
Consensus pattern (41 bp):
TCAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCA
Found at i:80405789 original size:3 final size:3
Alignment explanation
Indices: 80405781--80405805 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
80405771 GCCACGACTG
80405781 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
80405806 TCAATCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:80407478 original size:3 final size:3
Alignment explanation
Indices: 80407472--80407572 Score: 52
Period size: 3 Copynumber: 34.3 Consensus size: 3
80407462 TGTTTTTTTA
* *
80407472 TAT TAT TAC TAT TAT TAT TA- TACT TA- TAT ATATT TAT T-T TAT T-C
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT -TA-T TAT TAT TAT TAT
* * * * *
80407516 TAT TAT CAT TAC TAT TAC TACT T-C TAT TAT TAT TAT TAT T-T TGT
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT
*
80407560 TAC TAT TAT TAT T
1 TAT TAT TAT TAT T
80407573 TTTCATACAC
Statistics
Matches: 73, Mismatches: 15, Indels: 20
0.68 0.14 0.19
Matches are distributed among these distances:
2 10 0.14
3 55 0.75
4 7 0.10
5 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.01, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:80407489 original size:12 final size:12
Alignment explanation
Indices: 80407472--80407712 Score: 93
Period size: 12 Copynumber: 20.7 Consensus size: 12
80407462 TGTTTTTTTA
80407472 TATTATTACTAT
1 TATTATTACTAT
80407484 TATTATTA-TACT
1 TATTATTACTA-T
*
80407496 TA-TATATATTTAT
1 TATTAT-TA-CTAT
80407509 T-TTATT-CTAT
1 TATTATTACTAT
*
80407519 TATCATTACTAT
1 TATTATTACTAT
*
80407531 TACTACTT-CTAT
1 TATTA-TTACTAT
*
80407543 TATTATTATTAT
1 TATTATTACTAT
*
80407555 T-TTGTTACTAT
1 TATTATTACTAT
80407566 TATTATT--T-T
1 TATTATTACTAT
*
80407575 TCA-TA-CAC-AT
1 T-ATTATTACTAT
*
80407585 ATATTATTA-TTT
1 -TATTATTACTAT
80407597 ATATTATTACTAT
1 -TATTATTACTAT
* *** **
80407610 TACTAACGCCCT
1 TATTATTACTAT
80407622 TATTA-TAGCTAT
1 TATTATTA-CTAT
* * *
80407634 CATTATTCCTTT
1 TATTATTACTAT
*
80407646 TACTATTACTAT
1 TATTATTACTAT
80407658 TATTATTACTAT
1 TATTATTACTAT
*
80407670 TATTACTATCT-T
1 TATTATTA-CTAT
80407682 T-TTATT-CTTAT
1 TATTATTAC-TAT
* *
80407693 TTTTATTAATAT
1 TATTATTACTAT
80407705 TATTATTA
1 TATTATTA
80407713 TAATCTTACT
Statistics
Matches: 167, Mismatches: 36, Indels: 52
0.65 0.14 0.20
Matches are distributed among these distances:
9 5 0.03
10 9 0.05
11 29 0.17
12 110 0.66
13 12 0.07
14 2 0.01
ACGTcount: A:0.30, C:0.12, G:0.01, T:0.57
Consensus pattern (12 bp):
TATTATTACTAT
Found at i:80407670 original size:9 final size:9
Alignment explanation
Indices: 80407645--80407678 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
80407635 ATTATTCCTT
80407645 TTACTATTA
1 TTACTATTA
* *
80407654 CTATTATTA
1 TTACTATTA
80407663 TTACTATTA
1 TTACTATTA
80407672 TTACTAT
1 TTACTAT
80407679 CTTTTTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (9 bp):
TTACTATTA
Found at i:80407713 original size:6 final size:6
Alignment explanation
Indices: 80407649--80407713 Score: 53
Period size: 6 Copynumber: 11.0 Consensus size: 6
80407639 TTCCTTTTAC
* * * * *
80407649 TATTAC TATTAT TATTAC TATTAT TACTAT CT-TT-T TATTCT TATTTT
1 TATTAT TATTAT TATTAT TATTAT TATTAT -TATTAT TATTAT TATTAT
*
80407696 TATTAA TATTAT TATTAT
1 TATTAT TATTAT TATTAT
80407714 AATCTTACTT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
4 1 0.02
5 3 0.06
6 42 0.89
7 1 0.02
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (6 bp):
TATTAT
Found at i:80407807 original size:3 final size:3
Alignment explanation
Indices: 80407801--80407857 Score: 80
Period size: 3 Copynumber: 19.3 Consensus size: 3
80407791 AATATTTTCG
* * *
80407801 TTA TTA TTA TTA TCA CTA TT- GTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80407848 TTA TTA TTA T
1 TTA TTA TTA T
80407858 ATTTTCTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
2 1 0.02
3 46 0.98
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:80408044 original size:3 final size:3
Alignment explanation
Indices: 80408023--80408256 Score: 102
Period size: 3 Copynumber: 77.0 Consensus size: 3
80408013 TAAACTTTAG
* * **
80408023 ATT ATTT ATT ATT -TGT ATT ATT GTT ATT ACT ATT -TGT ATTT ACC ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT AT-T A-TT ATT ATT
* * * *
80408070 ATT ATT ACT ATT ATT -TT CACTT -TT ATT ACT ATT ACT ATT ATC ATT
1 ATT ATT ATT ATT ATT ATT -A-TT ATT ATT ATT ATT ATT ATT ATT ATT
* * * * * * *
80408115 TTT TTT ATT TTCT ATT ACT ATT ATC ATT ATT ATT GA-T ACT AAT ATT
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
* * * *
80408161 AAT ATT CTT ATT ATT ACTT -TT ATT ATT ATC ATT AGT ATT ATT ATT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * ** * * **
80408206 TTT ACT ACC ACT ATT ATT ATT ATC AAC ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
80408254 ATT
1 ATT
80408257 TTCATCATTA
Statistics
Matches: 172, Mismatches: 44, Indels: 30
0.70 0.18 0.12
Matches are distributed among these distances:
2 9 0.05
3 149 0.87
4 11 0.06
5 3 0.02
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.59
Consensus pattern (3 bp):
ATT
Found at i:80408137 original size:28 final size:27
Alignment explanation
Indices: 80408090--80408142 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
80408080 TTATTTTCAC
80408090 TTTTATTACTATTACTATTATCATTTT
1 TTTTATTACTATTACTATTATCATTTT
*
80408117 TTTTATTTTCTATTACTATTATCATT
1 TTTTA-TTACTATTACTATTATCATT
80408143 ATTATTGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 5 0.21
28 19 0.79
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (27 bp):
TTTTATTACTATTACTATTATCATTTT
Found at i:80408236 original size:15 final size:15
Alignment explanation
Indices: 80408218--80408267 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
80408208 TACTACCACT
*
80408218 ATTATTATTATCAAC
1 ATTATTATTATCATC
* *
80408233 ATTATTATTATTATT
1 ATTATTATTATCATC
*
80408248 ATTATTATTTTCATC
1 ATTATTATTATCATC
80408263 ATTAT
1 ATTAT
80408268 CGTCATTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTATTATTATCATC
Found at i:80418473 original size:13 final size:13
Alignment explanation
Indices: 80418457--80418497 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
80418447 AGAAATTAAT
80418457 TTAGTTAATTTGA
1 TTAGTTAATTTGA
* *
80418470 TTAGTTAAATTAA
1 TTAGTTAATTTGA
80418483 TTTAGTTAATTTGA
1 -TTAGTTAATTTGA
80418497 T
1 T
80418498 AAATTAATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (13 bp):
TTAGTTAATTTGA
Found at i:80418487 original size:14 final size:14
Alignment explanation
Indices: 80418449--80418491 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
80418439 TTTAATTGAG
80418449 AAATTAATTTAGTT
1 AAATTAATTTAGTT
* *
80418463 AATTTGA-TTAGTT
1 AAATTAATTTAGTT
80418476 AAATTAATTTAGTT
1 AAATTAATTTAGTT
80418490 AA
1 AA
80418492 TTTGATAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (14 bp):
AAATTAATTTAGTT
Done.