Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 25 of 295
Found at i:7522799 original size:40 final size:40
Alignment explanation
Indices: 7522755--7522926 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
7522745 GGACTAAGAT
*
7522755 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
7522795 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
7522835 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
7522875 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
7522914 CCGAAGGCATTTG
1 CCGAAGGCATTTG
7522927 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:7522944 original size:79 final size:80
Alignment explanation
Indices: 7522782--7522959 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
7522772 AGATACAAAT
* * * *
7522782 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
7522847 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
7522862 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
7522926 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
7522941 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
7522960 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:7528137 original size:15 final size:15
Alignment explanation
Indices: 7528117--7528146 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7528107 AACGTCGCTA
*
7528117 CCTTTCTTGATAATG
1 CCTTTCGTGATAATG
7528132 CCTTTCGTGATAATG
1 CCTTTCGTGATAATG
7528147 AGAGGCATTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (15 bp):
CCTTTCGTGATAATG
Found at i:7531496 original size:15 final size:16
Alignment explanation
Indices: 7531466--7531498 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7531456 AAGCTGTGTA
*
7531466 AACACAAACGCAACAC
1 AACACAAACACAACAC
7531482 AACAC-AACACAACAC
1 AACACAAACACAACAC
7531497 AA
1 AA
7531499 ATGTGTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.61, C:0.36, G:0.03, T:0.00
Consensus pattern (16 bp):
AACACAAACACAACAC
Found at i:7533476 original size:3 final size:3
Alignment explanation
Indices: 7533468--7533501 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7533458 GAATTAGTCC
* *
7533468 TAT TAT TAT TAT TAT TAC TAT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7533502 TATTTATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:7533483 original size:12 final size:12
Alignment explanation
Indices: 7533468--7533501 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7533458 GAATTAGTCC
*
7533468 TATTATTATTAT
1 TATTACTATTAT
7533480 TATTACTATTAT
1 TATTACTATTAT
7533492 TATTACTATT
1 TATTACTATT
7533502 TATTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:7533859 original size:21 final size:22
Alignment explanation
Indices: 7533819--7533859 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7533809 TTTCGTATTC
*
7533819 CATAGTTTTATACACTATATGA
1 CATAGTTTTATACACGATATGA
*
7533841 CATA-TTTTATATACGATAT
1 CATAGTTTTATACACGATAT
7533860 TATTTATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (22 bp):
CATAGTTTTATACACGATATGA
Found at i:7546232 original size:46 final size:42
Alignment explanation
Indices: 7545995--7546368 Score: 189
Period size: 46 Copynumber: 8.8 Consensus size: 42
7545985 TTATAAAAGG
* * * *
7545995 TCTTAT-TCCCCTGAGATTACGGTGGAACAGACCAAAGAATTGCAGA
1 TCTTATCT-CCCTGAGATTACAGTGGAGCAGATCAAAG-A---CAAA
* * * **
7546041 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAATATAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGA-TCAA-AGACAAA
* * * *
7546085 TCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAAG---GA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGACAAA
* * ** * **
7546124 TCTTATCTCTCTGA-AGTTACAGTAGAGCAGATCGCA-CCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGACAAA
* * *
7546165 TCTTATTTCCCTGAGATTACAGTGGAACAGA-CTAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATC-AAAG-A---CAAA
*
7546211 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGACAAA
* ** *
7546253 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGA-GAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGACAAA
* * * *
7546294 TCCTATCT-CCTGA-AGTTACAGTGGAGCGGATTAAA-ATAAAGA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGA-CAA-A
* *
7546336 TCTTATCTCTCTGA-AGTTACAGTAGAGCAGATC
1 TCTTATCTCCCTGAGA-TTACAGTGGAGCAGATC
7546369 GATGAAGATA
Statistics
Matches: 260, Mismatches: 48, Indels: 43
0.74 0.14 0.12
Matches are distributed among these distances:
39 32 0.12
40 23 0.09
41 37 0.14
42 49 0.19
43 24 0.09
44 27 0.10
45 1 0.00
46 61 0.23
47 5 0.02
48 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (42 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCAGATCAAAGACAAA
Found at i:7546403 original size:87 final size:86
Alignment explanation
Indices: 7546252--7546459 Score: 282
Period size: 87 Copynumber: 2.4 Consensus size: 86
7546242 TCGAAGACAA
* **
7546252 ATCTTATCTCCCTG-AGATTACAGCGGAGCAGAT--TGAAGAGAATCCTATCTCCTGAAGTTACA
1 ATCTTATCTCTCTGAAG-TTACAGTAGAGCAGATCGTGAAGAGAATCCTATCTCCTGAAGTTACA
7546314 GTGGAGCGGATTAAAATAAA-G
65 GTGGAGCGGATTAAAATAAAGG
*
7546335 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGATGAAGATATATCCTATCTCCTGAAGTTAC
1 ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCG-TGAAGAGA-ATCCTATCTCCTGAAGTTAC
*
7546400 AGTGGAGTGGATTAAAATAAAGG
64 AGTGGAGCGGATTAAAATAAAGG
* *
7546423 ATCTTATCTCT-TTAAGGTTACAGTAGAGGAGATCGTG
1 ATCTTATCTCTCTGAA-GTTACAGTAGAGCAGATCGTG
7546460 TCAGGTCCTA
Statistics
Matches: 111, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
83 27 0.24
84 2 0.02
86 7 0.06
87 45 0.41
88 30 0.27
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.29
Consensus pattern (86 bp):
ATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCGTGAAGAGAATCCTATCTCCTGAAGTTACAG
TGGAGCGGATTAAAATAAAGG
Found at i:7547909 original size:12 final size:12
Alignment explanation
Indices: 7547880--7547914 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
7547870 GAATTAGTCC
*
7547880 TATTATTATTAT
1 TATTACTATTAT
7547892 TATTACTATTAT
1 TATTACTATTAT
7547904 TATTACCTATT
1 TATTA-CTATT
7547915 TATTTATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 16 0.76
13 5 0.24
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (12 bp):
TATTACTATTAT
Found at i:7549997 original size:27 final size:27
Alignment explanation
Indices: 7549965--7550016 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
7549955 TAAATATTTG
* *
7549965 AATCTTACATTCTAGCTAAATGAATTA
1 AATCTTACATTCCAACTAAATGAATTA
7549992 AATCTTACATTCCAACTAAATGAAT
1 AATCTTACATTCCAACTAAATGAAT
7550017 CAAAGAATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.17, G:0.06, T:0.35
Consensus pattern (27 bp):
AATCTTACATTCCAACTAAATGAATTA
Found at i:7558969 original size:2 final size:2
Alignment explanation
Indices: 7558962--7559040 Score: 112
Period size: 2 Copynumber: 41.5 Consensus size: 2
7558952 AGTTATGAAA
7558962 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
* *
7559004 AG AG AG GG AG GG AG AG AG A- AG AG A- AG A- AG A- AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7559041 AAAAAAAGAA
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
1 4 0.06
2 65 0.94
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7559125 original size:3 final size:3
Alignment explanation
Indices: 7559113--7559190 Score: 113
Period size: 3 Copynumber: 26.3 Consensus size: 3
7559103 GTATCTCCAT
*
7559113 TTC TTC -TC TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
* * *
7559160 ATC TTC ATC TTC ATC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
7559191 ACCGCTCAGC
Statistics
Matches: 66, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
2 2 0.03
3 64 0.97
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:7559479 original size:30 final size:30
Alignment explanation
Indices: 7559403--7559488 Score: 86
Period size: 30 Copynumber: 2.9 Consensus size: 30
7559393 TTCAGCTCAC
*
7559403 GAGCTAAACCTTAGCTCAACTTCAGCTTAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTTAG
* * * *
7559433 GAGTTTAATCTCAGCTCAACTTTAGCTTAAG
1 GAGCTAAACCTTAGCTCAACTTTAGCTT-AG
* *
7559464 G-GCTAAAGCTTAGCTC-ATTTTAGCT
1 GAGCTAAACCTTAGCTCAACTTTAGCT
7559489 CAAACCCGGT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
29 8 0.18
30 34 0.76
31 3 0.07
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (30 bp):
GAGCTAAACCTTAGCTCAACTTTAGCTTAG
Found at i:7564474 original size:22 final size:22
Alignment explanation
Indices: 7564449--7564491 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7564439 TATCCAAACA
7564449 ATAACAACAAAATAG-TAGCAAC
1 ATAACAACAAAAT-GTTAGCAAC
* *
7564471 ATAATAATAAAATGTTAGCAA
1 ATAACAACAAAATGTTAGCAA
7564492 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.58, C:0.12, G:0.09, T:0.21
Consensus pattern (22 bp):
ATAACAACAAAATGTTAGCAAC
Found at i:7567495 original size:22 final size:22
Alignment explanation
Indices: 7567429--7567495 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
7567419 AGGAAAACAG
* **
7567429 ACTTTTAGCGGCGCTTTTTTTA
1 ACTTTTAGCGGCGCTTTCTAAA
* * **
7567451 GCCTTTAGCGGCGC-CACTAAA
1 ACTTTTAGCGGCGCTTTCTAAA
7567472 ACTTTTAGCGGCGCTTTCTAAA
1 ACTTTTAGCGGCGCTTTCTAAA
7567494 AC
1 AC
7567496 GCCGTAAAAA
Statistics
Matches: 33, Mismatches: 11, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
21 14 0.42
22 19 0.58
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.34
Consensus pattern (22 bp):
ACTTTTAGCGGCGCTTTCTAAA
Found at i:7573657 original size:9 final size:9
Alignment explanation
Indices: 7573643--7573868 Score: 143
Period size: 9 Copynumber: 24.6 Consensus size: 9
7573633 TATTTAAGTA
7573643 TTATGTAAG
1 TTATGTAAG
*
7573652 TTATGTAAT
1 TTATGTAAG
*
7573661 TTATGATATG
1 TTATG-TAAG
* * *
7573671 ATATAT-AT
1 TTATGTAAG
*
7573679 TTATGTAAA
1 TTATGTAAG
* *
7573688 TTATAT-AT
1 TTATGTAAG
*
7573696 TTATCTAAG
1 TTATGTAAG
*
7573705 TTATATAAG
1 TTATGTAAG
7573714 TTATGTAAG
1 TTATGTAAG
*
7573723 TTATGTAAA
1 TTATGTAAG
*
7573732 TTATGATATAAAA
1 TTATG---T-AAG
*
7573745 TATATTTAAG
1 T-TATGTAAG
7573755 TATTATGTAAG
1 --TTATGTAAG
7573766 TTATGTAAG
1 TTATGTAAG
* *
7573775 TTATAT-AT
1 TTATGTAAG
*
7573783 TTATCTAAG
1 TTATGTAAG
*
7573792 TTATATAAG
1 TTATGTAAG
*
7573801 TTATATAAG
1 TTATGTAAG
*
7573810 TTATGTATG
1 TTATGTAAG
*
7573819 TTATATAAG
1 TTATGTAAG
7573828 TTATGTAAG
1 TTATGTAAG
* *
7573837 TTATATATG
1 TTATGTAAG
*
7573846 TTATATAAG
1 TTATGTAAG
*
7573855 TTATGTAAA
1 TTATGTAAG
7573864 TTATG
1 TTATG
7573869 ATATCAAATA
Statistics
Matches: 171, Mismatches: 35, Indels: 22
0.75 0.15 0.10
Matches are distributed among these distances:
8 16 0.09
9 131 0.77
10 7 0.04
11 8 0.05
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Found at i:7573722 original size:18 final size:18
Alignment explanation
Indices: 7573643--7573868 Score: 161
Period size: 18 Copynumber: 12.3 Consensus size: 18
7573633 TATTTAAGTA
* *
7573643 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
7573661 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
7573679 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
7573696 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
7573714 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
7573732 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
*
7573755 TATTATGTAAGTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
7573775 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
7573792 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
7573810 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
*
7573828 TTATGTAAGTTATATATG
1 TTATGTAAGTTATATAAG
* * *
7573846 TTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
7573864 TTATG
1 TTATG
7573869 ATATCAAATA
Statistics
Matches: 167, Mismatches: 31, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
17 37 0.22
18 97 0.58
19 7 0.04
20 7 0.04
21 4 0.02
22 4 0.02
23 6 0.04
25 5 0.03
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:7573735 original size:27 final size:27
Alignment explanation
Indices: 7573696--7573868 Score: 159
Period size: 27 Copynumber: 6.2 Consensus size: 27
7573686 AATTATATAT
*
7573696 TTATCTAAGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
7573723 TTATGTAAATTATGATATAAAATATATTTAAG
1 TTATGT-AAGT-T-ATAT-AAGT-TATGTAAG
* * *
7573755 TATTATGTAAGTTATGTAAGTTATAT-AT
1 --TTATGTAAGTTATATAAGTTATGTAAG
* *
7573783 TTATCTAAGTTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
*
7573810 TTATGTATGTTATATAAGTTATGTAAG
1 TTATGTAAGTTATATAAGTTATGTAAG
* * *
7573837 TTATATATGTTATATAAGTTATGTAAA
1 TTATGTAAGTTATATAAGTTATGTAAG
7573864 TTATG
1 TTATG
7573869 ATATCAAATA
Statistics
Matches: 120, Mismatches: 18, Indels: 16
0.78 0.12 0.10
Matches are distributed among these distances:
26 22 0.18
27 59 0.49
28 4 0.03
29 5 0.04
30 7 0.06
31 6 0.05
32 8 0.07
33 3 0.03
34 6 0.05
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.47
Consensus pattern (27 bp):
TTATGTAAGTTATATAAGTTATGTAAG
Found at i:7573752 original size:114 final size:114
Alignment explanation
Indices: 7573619--7573840 Score: 313
Period size: 114 Copynumber: 1.9 Consensus size: 114
7573609 ACTCGTTATG
* * * *
7573619 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* *
7573683 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
* *
7573733 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * *
7573798 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTAT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTAT
7573841 ATATGTTATA
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
112 4 0.04
113 18 0.19
114 73 0.77
ACGTcount: A:0.39, C:0.01, G:0.13, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
Found at i:7575755 original size:745 final size:745
Alignment explanation
Indices: 7574325--7575979 Score: 3231
Period size: 745 Copynumber: 2.2 Consensus size: 745
7574315 GAAACATACA
7574325 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
7574390 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7574455 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7574520 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
7574585 AAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
261 AAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
*
7574650 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGGTTCATC
326 TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATC
7574715 ATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCG
391 ATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCG
7574780 TCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCA
456 TCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCA
7574845 GGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAATTTAAAAATATTAAATAT
521 GGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAATTTAAAAATATTAAATAT
7574910 TAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAAAATCAAAAAAGAATCG
586 TAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAAAATCAAAAAAGAATCG
*
7574975 TAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGA
651 TAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGA
7575040 GCTCGATAGAACTTTTTTCAAGTCTTTTTG
716 GCTCGATAGAACTTTTTTCAAGTCTTTTTG
7575070 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
*
7575135 TCGATATAAGGCAACTCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7575200 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7575265 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAAT
7575330 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
260 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
7575395 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCAT
325 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCAT
7575460 CATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
390 CATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCC
7575525 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTC
455 GTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTC
7575590 AGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAATTTAAAAATATTAAATA
520 AGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAATTTAAAAATATTAAATA
*
7575655 TTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAATAAAATCAAAAAAGAATT
585 TTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAAAATCAAAAAAGAATC
7575719 GTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
650 GTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATG
7575784 AGCTCGATAGAACTTTTTTCAAGTCTTTTTG
715 AGCTCGATAGAACTTTTTTCAAGTCTTTTTG
7575815 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
*
7575880 TCGATTTAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
* *
7575945 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTT
7575980 AATGGACAAG
Statistics
Matches: 901, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
745 530 0.59
746 371 0.41
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (745 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAATAGTAATTTGAATATAATA
AAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAAA
TATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAATTTTTTAAGATTCATC
ATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGCTCGATATAAGGCAACCCG
TCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGAAGGTCA
GGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAATTTAAAAATATTAAATAT
TAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAATAAAATCAAAAAAGAATCG
TAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAAATATTCAATAGTAAATGA
GCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:7575895 original size:372 final size:373
Alignment explanation
Indices: 7574325--7575979 Score: 3233
Period size: 373 Copynumber: 4.4 Consensus size: 373
7574315 GAAACATACA
7574325 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
7574390 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7574455 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7574520 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
7574584 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
261 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
7574649 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
326 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
7574697 AATTTTTTAAGGTTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
7574762 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7574827 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7574892 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
7574957 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
261 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
7575022 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
326 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
7575070 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
*
7575135 TCGATATAAGGCAACTCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7575200 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7575265 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
7575330 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
261 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
7575395 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
326 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
7575443 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
7575508 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
7575573 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
7575638 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATAT-AAAAAATAGTAATTTGAATATAAT
196 TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
* *
7575702 AAAATCAAAAAAGAATTGTAGTTTAATTTTTATAAGTAAATTAGAAATAAATTAAGGTTATATAA
261 AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
7575767 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
326 ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
7575815 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
*
7575880 TCGATTTAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
* *
7575945 AGGTTGGAGAGAAAGTCAGCTATTGTTGTAATTTT
131 AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTT
7575980 AATGGACAAG
Statistics
Matches: 1273, Mismatches: 9, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
372 531 0.42
373 742 0.58
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (373 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTGCAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATA
AGGTTGGAGAGAAGGTCAGGTATTGTTGTAATTTTGATAAAAAGTAGTTATAACTTTTAAAGAAA
TTTAAAAATATTAAATATTAAAATAAAACATTATTAATATAAAAAAATAGTAATTTGAATATAAT
AAAATCAAAAAAGAATCGTAGTTTAATTTTTATAAGTAAATTGGAAATAAATTAAGGTTATATAA
ATATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:7580229 original size:15 final size:15
Alignment explanation
Indices: 7580209--7580240 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7580199 AAATAATAAT
*
7580209 TTATATATATTTATC
1 TTATATACATTTATC
7580224 TTATATACATTTATC
1 TTATATACATTTATC
7580239 TT
1 TT
7580241 CTACATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:7581040 original size:41 final size:41
Alignment explanation
Indices: 7580995--7581186 Score: 141
Period size: 41 Copynumber: 4.6 Consensus size: 41
7580985 TTACTTTTTT
*
7580995 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGGCCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
*
7581036 GCGGCATTTTTCCAAAA--G-CGC-----C-TCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
*
7581068 GTGGCGTTTTTCCAAAAGCGCCGCTAAAACGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAA-----C----A--TCGACCTATA
* * * *
7581120 GCAGCGTTTTTCTAGAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
* *
7581161 GCGGCATTTTTCCAAAAGCGTCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
7581187 TTGTACAGTT
Statistics
Matches: 117, Mismatches: 14, Indels: 40
0.68 0.08 0.23
Matches are distributed among these distances:
32 24 0.21
33 1 0.01
34 1 0.01
35 3 0.03
38 3 0.03
39 1 0.01
41 47 0.40
45 1 0.01
47 1 0.01
52 35 0.30
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACATCGACCTATA
Found at i:7581217 original size:41 final size:41
Alignment explanation
Indices: 7581182--7581291 Score: 186
Period size: 41 Copynumber: 2.7 Consensus size: 41
7581172 CCAAAAGCGT
7581182 CGCTATTG-TACAGTTTTTAGCGGCGTTTGGGCCAAAAACAC
1 CGCTATTGCT-CAGTTTTTAGCGGCGTTTGGGCCAAAAACAC
7581223 CGCTATTGCTCAGTTTTTAGCGGCGTTTGGGCCAAAAACAC
1 CGCTATTGCTCAGTTTTTAGCGGCGTTTGGGCCAAAAACAC
* *
7581264 CGCTATTGCTCTGTTTTTTGCGGCGTTT
1 CGCTATTGCTCAGTTTTTAGCGGCGTTT
7581292 TACTGCAAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
41 65 0.98
42 1 0.02
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.35
Consensus pattern (41 bp):
CGCTATTGCTCAGTTTTTAGCGGCGTTTGGGCCAAAAACAC
Found at i:7582555 original size:26 final size:26
Alignment explanation
Indices: 7582504--7582555 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
7582494 TGTATATAAT
** *
7582504 TTTTAAGAATTTAGTTTTTTTTTTAA
1 TTTTAAGAATTTAGTTTAATTGTTAA
7582530 TTTTAA-AATTTAAGTTTAATTGTTAA
1 TTTTAAGAATTT-AGTTTAATTGTTAA
7582556 CTTTGTTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.60
Consensus pattern (26 bp):
TTTTAAGAATTTAGTTTAATTGTTAA
Found at i:7590068 original size:8 final size:8
Alignment explanation
Indices: 7590057--7590081 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
7590047 ATATAGACTA
7590057 AATAAAAT
1 AATAAAAT
7590065 AATAAAAT
1 AATAAAAT
7590073 AATAAAAT
1 AATAAAAT
7590081 A
1 A
7590082 TCTTATTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:7591054 original size:54 final size:52
Alignment explanation
Indices: 7590974--7591163 Score: 195
Period size: 53 Copynumber: 3.6 Consensus size: 52
7590964 CCATGGCAAC
* *
7590974 AAGTGATAAGCGATATACGTACAAGACCATAGCTTGGCTATGGCATCGGAAAA
1 AAGTGATAAGCGAT-TCCGTATAAGACCATAGCTTGGCTATGGCATCGGAAAA
* * * **
7591027 CAAGTGATAAGTGATTCCCGTATAAGACCATAGCTGGGCTATGGCTTCGGATTA
1 -AAGTGATAAGCGATT-CCGTATAAGACCATAGCTTGGCTATGGCATCGGAAAA
* *
7591081 AAGTGATACAAGCGA-TCCATATAAGACCATAG-TTGGGCTATGGCATCGGAGAA
1 AAGTGAT--AAGCGATTCCGTATAAGACCATAGCTT-GGCTATGGCATCGGAAAA
* * * *
7591134 AAGTGATAAGTGCTTTCGTTTAAGACCATA
1 AAGTGATAAGCGATTCCGTATAAGACCATA
7591164 ACCGGGATAT
Statistics
Matches: 113, Mismatches: 18, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
51 4 0.04
52 14 0.12
53 45 0.40
54 45 0.40
55 5 0.04
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAGTGATAAGCGATTCCGTATAAGACCATAGCTTGGCTATGGCATCGGAAAA
Found at i:7591201 original size:32 final size:32
Alignment explanation
Indices: 7591158--7591222 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
7591148 TTCGTTTAAG
7591158 ACCATAACCGGGATATGGCATCGATATGATAT
1 ACCATAACCGGGATATGGCATCGATATGATAT
* *
7591190 ACCATATCCGGGATATGGCATCGGTATGATAT
1 ACCATAACCGGGATATGGCATCGATATGATAT
7591222 A
1 A
7591223 TGACTCATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (32 bp):
ACCATAACCGGGATATGGCATCGATATGATAT
Found at i:7592526 original size:23 final size:22
Alignment explanation
Indices: 7592414--7592527 Score: 65
Period size: 23 Copynumber: 5.0 Consensus size: 22
7592404 ATATATATGT
*
7592414 ATATATA-ATAATAT-TTAAGA
1 ATATATACATAATATATTAAAA
*
7592434 ATATATACATAAGATGA-TATAAA
1 ATATATACATAATAT-ATTA-AAA
* * *
7592457 ATACATACATGGAATAGTATGAGAA
1 ATATATACAT--AATA-TATTAAAA
**
7592482 ATATATA-ACTAATGGCATTAAAA
1 ATATATACA-TAAT-ATATTAAAA
7592505 ATATATACATAATATATATAAAA
1 ATATATACATAATATAT-TAAAA
7592528 TGCATATAAT
Statistics
Matches: 69, Mismatches: 13, Indels: 21
0.67 0.13 0.20
Matches are distributed among these distances:
20 7 0.10
21 6 0.09
22 4 0.06
23 35 0.51
24 2 0.03
25 13 0.19
26 2 0.03
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (22 bp):
ATATATACATAATATATTAAAA
Found at i:7593264 original size:13 final size:13
Alignment explanation
Indices: 7593216--7593266 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
7593206 AAAGGTAAAA
7593216 TTTTTT-TTATAT
1 TTTTTTATTATAT
*
7593228 TTGTTTTGTATATAT
1 TT-TTTTAT-TATAT
*
7593243 ATTTTTATTATAT
1 TTTTTTATTATAT
7593256 TTTTTTATTAT
1 TTTTTTATTAT
7593267 GATGTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
12 2 0.06
13 19 0.58
14 6 0.18
15 6 0.18
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (13 bp):
TTTTTTATTATAT
Found at i:7593339 original size:17 final size:17
Alignment explanation
Indices: 7593319--7593357 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7593309 AAATAAAATA
*
7593319 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
7593336 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
7593353 AAAAT
1 AAAAT
7593358 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:7594542 original size:30 final size:30
Alignment explanation
Indices: 7594506--7594563 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
7594496 TTTTGAAAAA
7594506 CAGAAATT-AAAAGACTCAACTCAACTCTAG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTAG
*
7594536 CAGAAATTAAAAAGCTCAACTCACCTCT
1 CAGAAATTAAAAAGCTCAACTCAACTCT
7594564 CGCAATATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.45, C:0.26, G:0.09, T:0.21
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTAG
Found at i:7594660 original size:24 final size:24
Alignment explanation
Indices: 7594633--7594681 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7594623 CCAAGGCTCA
7594633 ACTCACTTCTCGCAATATGAGTTG
1 ACTCACTTCTCGCAATATGAGTTG
7594657 ACTCACTTCTCGCAATATGAGTTG
1 ACTCACTTCTCGCAATATGAGTTG
7594681 A
1 A
7594682 TTTTGAAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.33
Consensus pattern (24 bp):
ACTCACTTCTCGCAATATGAGTTG
Found at i:7594704 original size:14 final size:14
Alignment explanation
Indices: 7594683--7594717 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7594673 ATGAGTTGAT
7594683 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
7594696 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
7594710 TTTGAAAA
1 TTTGAAAA
7594718 TACCTCGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:7594906 original size:76 final size:76
Alignment explanation
Indices: 7594739--7594947 Score: 235
Period size: 77 Copynumber: 2.7 Consensus size: 76
7594729 GTGACCCGAG
* * * * *
7594739 GCTCAACTCACATCTCGCAATGTGCGTTGATTTTTTGAAA-ATACAAATTGAAAAAATACATCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGAAAGAAATTG--AAAATACATCAG
* * * *
7594803 TGTGTGATCTGAA
64 CGCGTGAGCTCAA
7594816 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGAAAGAAATTGAAAATAGC-TCAGC
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGAAAGAAATTGAAAATA-CATCAGC
7594880 GCGTGAGC-CAA
65 GCGTGAGCTCAA
* * **
7594891 GGTTCAACTCACCTCTCGCAATATGAGTCGATTTTTTTGAAAGGCAGAAATTGAAAA
1 -GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGAAAGAAATTGAAAA
7594948 ACGGAAATTG
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
75 2 0.02
76 44 0.38
77 61 0.53
78 8 0.07
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (76 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGAAAGAAATTGAAAATACATCAGCG
CGTGAGCTCAA
Found at i:7595199 original size:90 final size:89
Alignment explanation
Indices: 7595029--7595203 Score: 255
Period size: 92 Copynumber: 1.9 Consensus size: 89
7595019 TTGACAACAG
*
7595029 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
7595094 TTGAAAGGTAGAAATTGAAAAACGA
66 TTGAAA-GCAGAAATTGAAAAACGA
* * *
7595119 AAATTGAAAATACCTCGGCGTGTGACCTGAGGCTTAACTCGCCTCTCGCAATATGAGTTGA-TTT
1 AAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
7595183 TTTTGACAA-CAGAAATTGAAA
64 TTTTGA-AAGCAGAAATTGAAA
7595204 TTACCTCAGC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
90 32 0.42
91 9 0.12
92 36 0.47
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (89 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
TTGAAAGCAGAAATTGAAAAACGA
Found at i:7595263 original size:167 final size:166
Alignment explanation
Indices: 7594804--7595261 Score: 688
Period size: 167 Copynumber: 2.7 Consensus size: 166
7594794 ATACATCAGT
* * * * *
7594804 GTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAGAAAGAAATTGA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTGACA-ACAGAAATTGA
* * * * * *
7594868 AAATAGCTCAGCGCGTGAGCC-AAGGTTCAACTCACCTCTCGCAATATGAGTCGA-TTTTTTTGA
65 AATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGA
*
7594931 AAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGC
127 AAGGCAGAAATTGAAAAACGAAAATTGAAAATACCTCGGC
* * *
7594971 ATGTGACCTGAGGCTCCACTCGCCTCTCGCAATACGAGTTGATTTTTTTTGACAACAGAAATTGA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGA-TTTTTTTGACAACAGAAATTGA
7595036 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAG
65 AATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAG
*
7595101 GTAGAAATTGAAAAACGAAAATTGAAAATACCTCGGC
130 GCAGAAATTGAAAAACGAAAATTGAAAATACCTCGGC
*
7595138 GTGTGACCTGAGGCTTAACTCGCCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAA
1 GTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAA
*
7595203 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCACTATGAGTTGATTTTTTTT
66 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTT
7595262 TGGAAAATAC
Statistics
Matches: 266, Mismatches: 21, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
165 2 0.01
166 116 0.44
167 121 0.45
168 18 0.07
169 9 0.03
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (166 bp):
GTGTGACCTGAGGCTCAACTCGCCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAA
ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAAGG
CAGAAATTGAAAAACGAAAATTGAAAATACCTCGGC
Found at i:7595306 original size:64 final size:64
Alignment explanation
Indices: 7595200--7595322 Score: 210
Period size: 64 Copynumber: 1.9 Consensus size: 64
7595190 AACAGAAATT
* * * *
7595200 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCACTATGAGTTGATTTTTTTTTG
1 GAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTG
7595264 GAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
1 GAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTT
7595323 GAAACATACG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 55 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.33
Consensus pattern (64 bp):
GAAAATACCTCAGCGCGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTG
Found at i:7595743 original size:17 final size:18
Alignment explanation
Indices: 7595718--7595751 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7595708 ATATCACTCT
7595718 TTTGCCCTTG-GTTGAGC
1 TTTGCCCTTGCGTTGAGC
*
7595735 TTTGTCCTTGCGTTGAG
1 TTTGCCCTTGCGTTGAG
7595752 GCTCTTGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.06, C:0.21, G:0.29, T:0.44
Consensus pattern (18 bp):
TTTGCCCTTGCGTTGAGC
Found at i:7607574 original size:12 final size:12
Alignment explanation
Indices: 7607559--7607588 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7607549 ATATGTACAA
7607559 ATATATATATGT
1 ATATATATATGT
7607571 ATATATATATGT
1 ATATATATATGT
*
7607583 ACATAT
1 ATATAT
7607589 GTACGTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (12 bp):
ATATATATATGT
Found at i:7607818 original size:13 final size:13
Alignment explanation
Indices: 7607800--7607846 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
7607790 GGCATTAAAA
7607800 ATATATACATAAT
1 ATATATACATAAT
*
7607813 ATATATATATAAT
1 ATATATACATAAT
**
7607826 GCATATA-ATATAT
1 ATATATACATA-AT
7607839 ATATATAC
1 ATATATAC
7607847 GTATTAGAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
12 3 0.11
13 24 0.89
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.40
Consensus pattern (13 bp):
ATATATACATAAT
Found at i:7608558 original size:13 final size:13
Alignment explanation
Indices: 7608516--7608564 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
7608506 GGTAAAAAAA
7608516 TTTT-TTATATTT
1 TTTTATTATATTT
* *
7608528 GTTTTGTATATATAT
1 -TTTTAT-TATATTT
7608543 TTTTATTATATTT
1 TTTTATTATATTT
7608556 TTTTATTAT
1 TTTTATTAT
7608565 GATGTATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 19 0.61
14 6 0.19
15 6 0.19
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.73
Consensus pattern (13 bp):
TTTTATTATATTT
Found at i:7608635 original size:17 final size:17
Alignment explanation
Indices: 7608615--7608653 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7608605 AAATAAAATA
*
7608615 AAAATAA-AAATAAGAGT
1 AAAATAATAAAGAAGA-T
7608632 AAAATAATAAAGAAGAT
1 AAAATAATAAAGAAGAT
7608649 AAAAT
1 AAAAT
7608654 CACCTTTAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.72, C:0.00, G:0.10, T:0.18
Consensus pattern (17 bp):
AAAATAATAAAGAAGAT
Found at i:7609714 original size:41 final size:41
Alignment explanation
Indices: 7609657--7609746 Score: 171
Period size: 41 Copynumber: 2.2 Consensus size: 41
7609647 TGTGTCTAGG
7609657 CCGTGTGTGACACACGGTAGCCCCACGAGCGTGTGATATGA
1 CCGTGTGTGACACACGGTAGCCCCACGAGCGTGTGATATGA
*
7609698 CCGTGTGTGACACACGGTAGTCCCACGAGCGTGTGATATGA
1 CCGTGTGTGACACACGGTAGCCCCACGAGCGTGTGATATGA
7609739 CCGTGTGT
1 CCGTGTGT
7609747 CCTCTGCATC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.20, C:0.26, G:0.32, T:0.22
Consensus pattern (41 bp):
CCGTGTGTGACACACGGTAGCCCCACGAGCGTGTGATATGA
Found at i:7610460 original size:29 final size:30
Alignment explanation
Indices: 7610391--7610460 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
7610381 CTTGAGTTTA
7610391 AAATTTAAAAATTAAATGAACTAAATTCTT
1 AAATTTAAAAATTAAATGAACTAAATTCTT
** * *
7610421 AAAAATAAAAA-TATATGAATTAAATTC-T
1 AAATTTAAAAATTAAATGAACTAAATTCTT
7610449 AAATTTACAAAA
1 AAATTTA-AAAA
7610461 AGTACAATGA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
28 6 0.18
29 18 0.55
30 9 0.27
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.33
Consensus pattern (30 bp):
AAATTTAAAAATTAAATGAACTAAATTCTT
Found at i:7611995 original size:7 final size:7
Alignment explanation
Indices: 7611971--7612011 Score: 50
Period size: 6 Copynumber: 5.9 Consensus size: 7
7611961 TTTTATATAC
7611971 TTTTAA-
1 TTTTAAT
7611977 TTTTAA-
1 TTTTAAT
7611983 TTTTAAT
1 TTTTAAT
7611990 TTTTAATT
1 TTTTAA-T
7611998 TTTATAAT
1 TTT-TAAT
7612006 TTTTAA
1 TTTTAA
7612012 ATTATTATTT
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.38
7 9 0.28
8 8 0.25
9 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTTAAT
Found at i:7612014 original size:17 final size:16
Alignment explanation
Indices: 7611986--7612019 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
7611976 ATTTTAATTT
*
7611986 TAATTTTTAATTTTTA
1 TAATTTTTAATTATTA
7612002 TAATTTTTAAATTATTA
1 TAATTTTT-AATTATTA
7612019 T
1 T
7612020 TTGTCAACGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TAATTTTTAATTATTA
Found at i:7624545 original size:22 final size:21
Alignment explanation
Indices: 7624520--7624560 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7624510 TTAAATCTCA
7624520 AAGATTACAAGATCATATCTTC
1 AAGATTAC-AGATCATATCTTC
* *
7624542 AAGATTGCATATCATATCT
1 AAGATTACAGATCATATCT
7624561 AAGATTGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (21 bp):
AAGATTACAGATCATATCTTC
Found at i:7624566 original size:19 final size:19
Alignment explanation
Indices: 7624531--7624609 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
7624521 AGATTACAAG
7624531 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
7624552 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
7624569 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7624588 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
7624607 ATC
1 ATC
7624610 TTTAAAGATT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
20 1 0.02
21 8 0.14
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:7624586 original size:36 final size:38
Alignment explanation
Indices: 7624531--7624603 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 38
7624521 AGATTACAAG
7624531 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
7624569 ATCATATC-T-AAGATTGCATATCATATCTAAGATTG
1 ATCATATCTTCAAGATTGCATATCATATCTAAGATTG
7624604 CATATCTTTA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 26 0.74
37 1 0.03
38 8 0.23
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (38 bp):
ATCATATCTTCAAGATTGCATATCATATCTAAGATTGT
Found at i:7624618 original size:36 final size:35
Alignment explanation
Indices: 7624533--7624619 Score: 120
Period size: 36 Copynumber: 2.4 Consensus size: 35
7624523 ATTACAAGAT
*
7624533 CATATCTTCAAGATTGCATATCATATCTAAGATTG
1 CATATCTTTAAGATTGCATATCATATCTAAGATTG
* * *
7624568 TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CAT-ATCTTTAAGATTGCATATCATATCTAAGATTG
7624604 CATATCTTTAAAGATT
1 CATATCTTT-AAGATT
7624620 ATATTTCCAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 6 0.14
36 37 0.86
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (35 bp):
CATATCTTTAAGATTGCATATCATATCTAAGATTG
Found at i:7626577 original size:15 final size:16
Alignment explanation
Indices: 7626554--7626587 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7626544 AGGCGGCACC
*
7626554 AGAGGGAAA-AAAAAG
1 AGAGAGAAAGAAAAAG
7626569 AGAGAGAAAGAAAAAG
1 AGAGAGAAAGAAAAAG
7626585 AGA
1 AGA
7626588 AGGAGAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AGAGAGAAAGAAAAAG
Found at i:7626586 original size:29 final size:28
Alignment explanation
Indices: 7626558--7626626 Score: 68
Period size: 29 Copynumber: 2.4 Consensus size: 28
7626548 GGCACCAGAG
7626558 GGAAAAAAAAGAGAGAGAAAGAAAAAGA
1 GGAAAAAAAAGAGAGAGAAAGAAAAAGA
* * * *
7626586 -GAAGGAGAAGAGGGAGGGAAAGAAAAAGAA
1 GGAA--AAAAAAGAGAGAGAAAGAAAAAG-A
7626616 GGAAAAAAAAG
1 GGAAAAAAAAG
7626627 GTAAATTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
27 3 0.10
29 24 0.77
30 1 0.03
31 3 0.10
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (28 bp):
GGAAAAAAAAGAGAGAGAAAGAAAAAGA
Found at i:7627489 original size:153 final size:152
Alignment explanation
Indices: 7627131--7627794 Score: 1023
Period size: 153 Copynumber: 4.4 Consensus size: 152
7627121 TTTTACTAAA
* *
7627131 ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCTAAAATCAAAGTTTTTTT
1 ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCCAAAATC-AAG-GTTTTT
* *
7627196 TACTAAATTTATATAAAAAAGGCACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT
64 TACTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT
7627261 AAAAAATAAAATACGAAAATAGTAT
129 -AAAAATAAAATACGAAAATAGTAT
* *
7627286 ATTTT-AAAAATAAAATCTGAAAATAAGCAAAATACCAACAAATGGCCAAAATCAAGGTTTTTTA
1 ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTTTTA
* * **
7627350 CTAAATTTATATAAAAAAGACACTAAAATAATATATTTGAAACATTATGTAGAAAAATAATATAA
66 CTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-A
*
7627415 AAAATAAAATACAAAAATAGTAT
130 AAAATAAAATACGAAAATAGTAT
* * * * *
7627438 ATTTTTAAAAATAAAATCTGAAAATAAGCAAAATACCAACAAATGGCCAAAATTATGGTTTTCTT
1 ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTT-TT
7627503 ACTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
65 ACTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
7627568 AAAATAAAATACGAAAATAGTAT
130 AAAATAAAATACGAAAATAGTAT
* * * *
7627591 ATTTTAAAAAATAAAATCCAAAAATAAGAAAAATACCAACAAA-GGCCAAAATC-AGGGTATTTA
1 ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTTTTA
* *
7627654 CTAAATTCATATGAAAAAA-ATACTAAAATAATACATTTGAAATATTATGTACTAAAATAATATA
66 CTAAATTCATAT-AAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATA
7627718 AAAATAAAATACGAAAATAGTAT
130 AAAATAAAATACGAAAATAGTAT
* *
7627741 ATTTTAAAAAATAAAATCAGAAAATAA-AAAAATACCAACAAAGGGCCAAAATCA
1 ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCA
7627795 CGGGAAAAAA
Statistics
Matches: 476, Mismatches: 28, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
149 15 0.03
150 116 0.24
151 10 0.02
152 104 0.22
153 119 0.25
154 107 0.22
155 5 0.01
ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27
Consensus pattern (152 bp):
ATTTTAAAAAATAAAATCCGAAAATAAGCAAAATACCAACAAAGGGCCAAAATCAAGGTTTTTTA
CTAAATTCATATAAAAAAGACACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAA
AAATAAAATACGAAAATAGTAT
Found at i:7632464 original size:82 final size:82
Alignment explanation
Indices: 7632352--7632517 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 82
7632342 ATTGGGGTGC
7632352 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
1 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
7632417 GTTTGGTTGCATCCAGT
66 GTTTGGTTGCATCCAGT
7632434 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
1 ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
*
7632499 GTTTGTTTGCATCCAGT
66 GTTTGGTTGCATCCAGT
7632516 AT
1 AT
7632518 ATCCCAGATC
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 83 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (82 bp):
ATTAACGCACTAATTGTTAATTTCAATATAGTCGAGTGGTTCCATAGGGATCAAGTACTACAACA
GTTTGGTTGCATCCAGT
Found at i:7637179 original size:16 final size:16
Alignment explanation
Indices: 7637158--7637190 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7637148 ATAGTTTTTT
7637158 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7637174 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7637190 A
1 A
7637191 GGGTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
ACTAACAATAATAATA
Found at i:7637184 original size:42 final size:42
Alignment explanation
Indices: 7637007--7637309 Score: 373
Period size: 42 Copynumber: 7.5 Consensus size: 42
7636997 ATAAATAAAA
* * *
7637007 AATAATAACTAACTAACAATAATTAGGGGTTTTTACT-A-AA-
1 AATAATAACTAAC-AATAATAATAAGGGTTTTTTACTAACAAT
* * *
7637047 AATAATAACCAACAATAATAATAATAGTTTTTTTACTAACAAT
1 AATAATAACTAACAATAATAATAA-GGGTTTTTTACTAACAAT
7637090 AATAATAACTAACAATAAT--TAA--GTTTTTTACTAAC---
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
* **
7637125 AATAATAACCAACAATAATAATAATAGTTTTTTACTAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
7637167 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
*
7637209 AATAATAACTAACAATAATAATAAGGGTTTTTTACCAACAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
* *
7637251 AATAAT---TAACAATAATAATAA-GGTCTTTTACTAAGAAT
1 AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
*
7637289 AATAATAATTAACAATAATAA
1 AATAATAACTAACAATAATAA
7637310 CTAACAACAA
Statistics
Matches: 233, Mismatches: 16, Indels: 27
0.84 0.06 0.10
Matches are distributed among these distances:
35 18 0.08
37 3 0.01
38 32 0.14
39 37 0.16
40 21 0.09
41 16 0.07
42 88 0.38
43 18 0.08
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (42 bp):
AATAATAACTAACAATAATAATAAGGGTTTTTTACTAACAAT
Found at i:7637221 original size:16 final size:16
Alignment explanation
Indices: 7637200--7637232 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
7637190 AGGGTTTTTT
7637200 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7637216 ACTAACAATAATAATA
1 ACTAACAATAATAATA
7637232 A
1 A
7637233 GGGTTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
ACTAACAATAATAATA
Found at i:7637263 original size:13 final size:13
Alignment explanation
Indices: 7637245--7637269 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7637235 GTTTTTTACC
7637245 AACAATAATAATT
1 AACAATAATAATT
7637258 AACAATAATAAT
1 AACAATAATAAT
7637270 AAGGTCTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (13 bp):
AACAATAATAATT
Found at i:7637307 original size:13 final size:12
Alignment explanation
Indices: 7637289--7637350 Score: 74
Period size: 13 Copynumber: 5.1 Consensus size: 12
7637279 TACTAAGAAT
7637289 AATAATAATTAAC
1 AATAATAA-TAAC
7637302 AATAATAACTAAC
1 AATAATAA-TAAC
*
7637315 AACAA-AA-AAC
1 AATAATAATAAC
7637325 AATAATAATCAAC
1 AATAATAAT-AAC
7637338 AATAATAATAAC
1 AATAATAATAAC
7637350 A
1 A
7637351 GCAAAAACAC
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
10 7 0.16
11 2 0.05
12 6 0.14
13 28 0.65
ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:7637318 original size:16 final size:16
Alignment explanation
Indices: 7637286--7637348 Score: 56
Period size: 16 Copynumber: 3.7 Consensus size: 16
7637276 TTTTACTAAG
*
7637286 AATAATAATAATTAAC
1 AATAATAATAATCAAC
7637302 AATAATAACTAA-CAAC
1 AATAATAA-TAATCAAC
*
7637318 AAAAAACAATAATAATCAAC
1 ----AATAATAATAATCAAC
7637338 AATAATAATAA
1 AATAATAATAA
7637349 CAGCAAAAAC
Statistics
Matches: 38, Mismatches: 3, Indels: 12
0.72 0.06 0.23
Matches are distributed among these distances:
16 21 0.55
17 3 0.08
19 3 0.08
20 11 0.29
ACGTcount: A:0.67, C:0.11, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAATAATAATCAAC
Found at i:7637332 original size:36 final size:36
Alignment explanation
Indices: 7637289--7637365 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
7637279 TACTAAGAAT
*
7637289 AATAATAATTAACAATAATAACTAACAACAAAAA-AC
1 AATAATAATCAACAATAATAA-TAACAACAAAAACAC
*
7637325 AATAATAATCAACAATAATAATAACAGCAAAAACAC
1 AATAATAATCAACAATAATAATAACAACAAAAACAC
7637361 AATAA
1 AATAA
7637366 CAATATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 11 0.29
36 27 0.71
ACGTcount: A:0.66, C:0.14, G:0.01, T:0.18
Consensus pattern (36 bp):
AATAATAATCAACAATAATAATAACAACAAAAACAC
Found at i:7637456 original size:26 final size:26
Alignment explanation
Indices: 7637423--7637479 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
7637413 TATTTCTTTT
7637423 TCCTTTTCCTTCTTCTTCT-TCTCTTC
1 TCCTTTTCCTTCTTCTTCTCT-TCTTC
* *
7637449 TCCTTTTCTTTCTTTTTCTCTTCTTC
1 TCCTTTTCCTTCTTCTTCTCTTCTTC
7637475 TCCTT
1 TCCTT
7637480 GCTGCTGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (26 bp):
TCCTTTTCCTTCTTCTTCTCTTCTTC
Found at i:7637457 original size:38 final size:37
Alignment explanation
Indices: 7637402--7637475 Score: 89
Period size: 38 Copynumber: 2.0 Consensus size: 37
7637392 AAAATTGTAC
7637402 CTTCTCTTATCTATTTCTTTTTCCTTTTC-CTTCTTCTT
1 CTTCTCTTATCTATTTC--TTTCCTTTTCTCTTCTTCTT
* *
7637440 CTTCTCTTCTCCT-TTTCTTTCTTTTTCTCTTCTTCT
1 CTTCTCTTAT-CTATTTCTTTCCTTTTCTCTTCTTCT
7637476 CCTTGCTGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
36 9 0.28
37 8 0.25
38 13 0.41
39 2 0.06
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (37 bp):
CTTCTCTTATCTATTTCTTTCCTTTTCTCTTCTTCTT
Found at i:7637579 original size:27 final size:27
Alignment explanation
Indices: 7637539--7637603 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
7637529 TATTGGTTAG
* *
7637539 GTGCCACCTATGCCAGAGGCACAACCA
1 GTGCCGCCTCTGCCAGAGGCACAACCA
* *
7637566 GTGCTGCCTCTGCCAGAGGCACAACCG
1 GTGCCGCCTCTGCCAGAGGCACAACCA
7637593 GTGCCGCCTCT
1 GTGCCGCCTCT
7637604 ATCACCCCCT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.20, C:0.38, G:0.26, T:0.15
Consensus pattern (27 bp):
GTGCCGCCTCTGCCAGAGGCACAACCA
Found at i:7637769 original size:22 final size:22
Alignment explanation
Indices: 7637741--7637782 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7637731 GGTGCATAAT
7637741 TTTTTTATTGTATTATTTTAGC
1 TTTTTTATTGTATTATTTTAGC
* *
7637763 TTTTTTATTTTTTTATTTTA
1 TTTTTTATTGTATTATTTTA
7637783 TTTTAGTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTTTTATTGTATTATTTTAGC
Found at i:7638405 original size:15 final size:15
Alignment explanation
Indices: 7638361--7638438 Score: 56
Period size: 16 Copynumber: 5.3 Consensus size: 15
7638351 ATCCGTCTAC
* *
7638361 TTTAATTTTTTATATT
1 TTTAATTATTAATA-T
*
7638377 TTTGAATGATTAATAT
1 TTT-AATTATTAATAT
7638393 TTTAATTATTAATA-
1 TTTAATTATTAATAT
*
7638407 ATTAA--ATT-ATAT
1 TTTAATTATTAATAT
*
7638419 TTTATAATATTAATAT
1 TTTA-ATTATTAATAT
7638435 TTTA
1 TTTA
7638439 TTAAAATACC
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
11 3 0.06
12 6 0.12
13 1 0.02
14 4 0.08
15 13 0.26
16 15 0.30
17 8 0.16
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (15 bp):
TTTAATTATTAATAT
Found at i:7647987 original size:46 final size:44
Alignment explanation
Indices: 7647883--7647990 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7647873 TGTCTTTGAC
** * * *
7647883 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7647927 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7647973 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7647991 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7654606 original size:14 final size:15
Alignment explanation
Indices: 7654584--7654613 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7654574 GAATATCAAA
7654584 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
7654599 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
7654613 A
1 A
7654614 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:7654861 original size:69 final size:69
Alignment explanation
Indices: 7654716--7654853 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
7654706 TAGAAAGGTA
7654716 AACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
1 AACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
7654781 AGGG
66 AGGG
*
7654785 AACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTG
1 AACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
7654850 AGGG
66 AGGG
7654854 GAGATCTTCA
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.16
Consensus pattern (69 bp):
AACATCTTAGAAGAATAATGAATACAAAACATAAAGAAAAACCCAAAACTCCTGAAGGGAAATTA
AGGG
Found at i:7657744 original size:443 final size:443
Alignment explanation
Indices: 7656918--7657803 Score: 1610
Period size: 443 Copynumber: 2.0 Consensus size: 443
7656908 TATATAAATT
*
7656918 TATCAATCTTAACAAGAACATCTTCAATGATGCCCCTAGAAAATCTAATGGTTTTTGTAGAAACC
1 TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGAAAATCTAATGGTTTTTGTAGAAACC
*
7656983 ATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAATGATAAACGAAAATTTGGAGTCGCC
66 ATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAACGATAAACGAAAATTTGGAGTCGCC
7657048 ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
131 ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
*
7657113 TGGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGGGTTTGGGAGTCAGTTAC
196 TAGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGGGTTTGGGAGTCAGTTAC
* *
7657178 GTGCAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGTACCTAATTCATTAATTACTGTCC
261 GTGCAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGGACCTAATTCATTAATTAATGTCC
*
7657243 TAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCCTTTTTATGAATGTTTA
326 TAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTTA
7657308 GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
391 GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
* * *
7657361 TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGGAAATCTCATGGTTTTTGTCGAAACC
1 TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGAAAATCTAATGGTTTTTGTAGAAACC
**
7657426 ATTTTTTTAAAAAAACAGAGGTCGACTTTAATTTTGAAAACGATAAACGAAAATTTGGAGTCGCC
66 ATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAACGATAAACGAAAATTTGGAGTCGCC
*
7657491 ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTTATTTTAATAAAACATTT
131 ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
* *
7657556 TAGGTTTACTAAAACAACGATTTTGGTCTACGAAATTTGAGAAAACGGGTTTGGGAGTCGGTTAC
196 TAGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGGGTTTGGGAGTCAGTTAC
* *
7657621 GTGCAAGGAAGGATTAACACCCTCATAACACCTAAAATTGGGACCTAATTGATTAATTAATGTCC
261 GTGCAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGGACCTAATTCATTAATTAATGTCC
* *
7657686 TAATGTTGAAATTTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTTA
326 TAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTTA
7657751 GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
391 GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
7657804 CATCCAACAC
Statistics
Matches: 425, Mismatches: 18, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
443 425 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (443 bp):
TATCAATCTTAACAAGAACATCTTCAATGATACCCCTAGAAAATCTAATGGTTTTTGTAGAAACC
ATTTTTAAAAAAAAACAGAGGTCGACTTTAATTTTGAAAACGATAAACGAAAATTTGGAGTCGCC
ACCAATCTTTTTTGTTTAGGTGTGATCGGATCACCAAGAAGTTTGGTCATTTTAATAAAACATTT
TAGGTTTACTAAAACAACGATTTTGGTCTAAGAAATTTGAGAAAACGGGTTTGGGAGTCAGTTAC
GTGCAAGGAAGGATTAACACCCTCATAACACCCAAAATTGGGACCTAATTCATTAATTAATGTCC
TAATGTCGAAAATTGAAAAGATTTAAAATAAATTTTGAAATACGATCCATTTTTATGAATGTTTA
GCTAACTTGAAGTGGATATTAAGATTCTCTTATTTCGAAGAAGTAAAATATCA
Found at i:7658141 original size:130 final size:127
Alignment explanation
Indices: 7657976--7658219 Score: 398
Period size: 130 Copynumber: 1.9 Consensus size: 127
7657966 ACGTTGAGCA
* *
7657976 TTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAAC
1 TTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTGAAC
* *
7658041 AAGCGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACTTCGAACG
66 AAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACTTCGAACG
**
7658103 TTGCCTTCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTG
1 TTGCCTT-GTTTT--AGAATTTAGAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTG
*
7658168 AACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCTCGAATTTC
63 AACAAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTC
7658220 TAAGCATCAA
Statistics
Matches: 107, Mismatches: 7, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
127 7 0.07
128 5 0.05
130 95 0.89
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (127 bp):
TTGCCTTGTTTTAGAATTTAGAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTGAAC
AAACGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACTTCGAACG
Found at i:7658245 original size:130 final size:130
Alignment explanation
Indices: 7657981--7658247 Score: 385
Period size: 130 Copynumber: 2.1 Consensus size: 130
7657971 GAGCATTGCC
* * *
7657981 TTGTTTT--AGAATTTAGAAAACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAG
1 TTGTTTTAAAGAATTTAGAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTGAACAAA
* * * * *
7658044 CGAGAAATTGCAACCCAGCACGATAGGGCACGATTCCCCGAATTTCCAAACTTCGAACGTTGCCT
66 CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACATCAAACATCGCCT
* **
7658109 TCGTTTTAAAGAATTTTTAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTGAACAAA
1 TTGTTTTAAAGAATTTAGAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTGAACAAA
* * * *
7658174 CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCTCGAATTTCTAAGCATCAAACATCGCTT
66 CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACATCAAACATCGCCT
7658239 TTGTTTTAA
1 TTGTTTTAA
7658248 GGTTTAGACA
Statistics
Matches: 121, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
128 6 0.05
130 115 0.95
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (130 bp):
TTGTTTTAAAGAATTTAGAAAACATGAGTGAAATTCCAAAGGAATATTCGATTAATTTGAACAAA
CGAGAAATTGCAACCCAGCACGATAGGGCACGATACCCCGAATTTCCAAACATCAAACATCGCCT
Found at i:7658754 original size:11 final size:12
Alignment explanation
Indices: 7658729--7658761 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7658719 AAATAGAATA
7658729 AATTAAAATAAT
1 AATTAAAATAAT
7658741 AATTAAAA-AAT
1 AATTAAAATAAT
7658752 AATTTAAAAT
1 AA-TTAAAAT
7658762 TGCGTATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
AATTAAAATAAT
Found at i:7659197 original size:17 final size:18
Alignment explanation
Indices: 7659170--7659204 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
7659160 ATAGAAATAC
7659170 AATATATAGAAATATAAA
1 AATATATAGAAATATAAA
7659188 AATA-ATAGAAATATAAA
1 AATATATAGAAATATAAA
7659205 TAGACAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (18 bp):
AATATATAGAAATATAAA
Found at i:7659270 original size:3 final size:3
Alignment explanation
Indices: 7659262--7659307 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
7659252 GTGTGGAAAC
**
7659262 ATA ATA ATA ATA ATA ATA ACG ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7659308 ATATACTAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7661839 original size:46 final size:46
Alignment explanation
Indices: 7661787--7662049 Score: 395
Period size: 46 Copynumber: 5.7 Consensus size: 46
7661777 TGTCATAGCG
* * * *
7661787 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
7661833 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
7661879 TCTTTCGACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
7661925 TC-TTCAACCATGGTCTTACACATTTCATATCAGGTTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* * *
7661970 TCTTTCAACCACGGTCTTACACATTTCATATCAGGCTGTCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
7662016 TCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
7662050 AGAGCACACT
Statistics
Matches: 200, Mismatches: 15, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 45 0.22
46 155 0.77
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:7661955 original size:91 final size:92
Alignment explanation
Indices: 7661787--7662049 Score: 395
Period size: 91 Copynumber: 2.9 Consensus size: 92
7661777 TGTCATAGCG
* * * *
7661787 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAACCATGGTCTT
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTT
7661851 ACACATTTCATATCAGGTTGCCATGGTA
65 ACACATTTCATATCAGGTTGCCATGGTA
* * *
7661879 TCTTTCGACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTGTC-TTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
7661943 CACATTTCATATCAGGTTGTCATGGTA
66 CACATTTCATATCAGGTTGCCATGGTA
* * *
7661970 TCTTTCAACCACGGTCTTACACATTTCATATCAGGCTGTCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
7662035 CACATTTCATTTCAG
66 CACATTTCATATCAG
7662050 AGAGCACACT
Statistics
Matches: 154, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
91 88 0.57
92 66 0.43
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (92 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACATTTCATATCAGGTTGCCATGGTA
Found at i:7662000 original size:137 final size:138
Alignment explanation
Indices: 7661780--7662049 Score: 418
Period size: 137 Copynumber: 2.0 Consensus size: 138
7661770 GACATGATGT
* * * * *
7661780 CATAGCGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCAT
1 CATAGCGTCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAACCAC
* *
7661845 GGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCGACCATGGTCTTACACATTTCATAT
66 GGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
7661910 CAGGTTGC
131 CAGGTTGC
* *
7661918 CATAGTGTC-TTCAACCATGGTCTTACACA-TTTCATATCAGGTTGTCATGGTATCTTTCAACCA
1 CATAGCGTCTTTCAACCATGGTCTTACACATTTTC-TATCAGGTTGCCATGGTATCTTTCAACCA
* *
7661981 CGGTCTTACACATTTCATATCAGGCTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATT
65 CGGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
7662046 TCAG
130 TCAG
7662050 AGAGCACACT
Statistics
Matches: 120, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
136 4 0.03
137 108 0.90
138 8 0.07
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (138 bp):
CATAGCGTCTTTCAACCATGGTCTTACACATTTTCTATCAGGTTGCCATGGTATCTTTCAACCAC
GGTCTTACACATTTCATATCAGGCTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
CAGGTTGC
Found at i:7664523 original size:29 final size:30
Alignment explanation
Indices: 7664473--7664530 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
7664463 CACCCTTAAA
* * *
7664473 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
7664503 ATATTTACACT-TTAATCCTTCAAATTTT
1 ATATTTACACTATTAATCCTTCAAATTTT
7664531 TTGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.28, C:0.21, G:0.03, T:0.48
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:7666226 original size:24 final size:24
Alignment explanation
Indices: 7666197--7666245 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
7666187 GTAGCAATAT
7666197 AATTTACTTTTAATAATACACATA
1 AATTTACTTTTAATAATACACATA
7666221 AATTTACTTTTAATAATACACATA
1 AATTTACTTTTAATAATACACATA
7666245 A
1 A
7666246 CATTCATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.41
Consensus pattern (24 bp):
AATTTACTTTTAATAATACACATA
Found at i:7667324 original size:46 final size:46
Alignment explanation
Indices: 7667272--7667535 Score: 431
Period size: 46 Copynumber: 5.7 Consensus size: 46
7667262 TGTCATAGCG
* * * *
7667272 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCAGGTTGCCATGGTA
7667318 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
7667364 TCTTTCGACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
7667410 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
* *
7667456 TCTTTCAACCACGGTCTTACACATTTCATATCAGGCTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
*
7667502 TCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG
7667536 AGAGCACACT
Statistics
Matches: 205, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
45 4 0.02
46 201 0.98
ACGTcount: A:0.22, C:0.25, G:0.15, T:0.38
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTA
Found at i:7670009 original size:29 final size:30
Alignment explanation
Indices: 7669959--7670016 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 30
7669949 CACCCTTAAA
* * *
7669959 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
7669989 ATATTTACACT-TTAATCCTTCAAATTTT
1 ATATTTACACTATTAATCCTTCAAATTTT
7670017 TTGTATTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.28, C:0.21, G:0.03, T:0.48
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:7675795 original size:23 final size:23
Alignment explanation
Indices: 7675769--7675813 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7675759 TGAGTATGTG
*
7675769 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
7675792 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
7675814 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:7684886 original size:17 final size:18
Alignment explanation
Indices: 7684863--7684904 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7684853 CTAAATAGGC
7684863 CGTGTGGG-ACACACGGG
1 CGTGTGGGCACACACGGG
* *
7684880 TGTGTGGGCACACATGGG
1 CGTGTGGGCACACACGGG
7684898 CGTGTGG
1 CGTGTGG
7684905 AATTTTGGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.14, C:0.19, G:0.48, T:0.19
Consensus pattern (18 bp):
CGTGTGGGCACACACGGG
Found at i:7686558 original size:15 final size:15
Alignment explanation
Indices: 7686538--7686571 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7686528 AATTTCTTCA
7686538 AATTATTATTTAATC
1 AATTATTATTTAATC
7686553 AATTATTATTTAATC
1 AATTATTATTTAATC
7686568 AATT
1 AATT
7686572 GTAATTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (15 bp):
AATTATTATTTAATC
Found at i:7688173 original size:23 final size:24
Alignment explanation
Indices: 7688145--7688195 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
7688135 ATGAATTTAC
*
7688145 ATATTTTTA-ATTTATTAAATA-AT
1 ATATTTTTATATTT-TCAAATATAT
7688168 ATATTTTTATATTTTCAAATATAT
1 ATATTTTTATATTTTCAAATATAT
7688192 ATAT
1 ATAT
7688196 ATGTTATACC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 15 0.60
24 10 0.40
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (24 bp):
ATATTTTTATATTTTCAAATATAT
Found at i:7689427 original size:34 final size:34
Alignment explanation
Indices: 7689389--7689462 Score: 96
Period size: 34 Copynumber: 2.2 Consensus size: 34
7689379 TTTTAAAAAA
* *
7689389 AATTATTTTTA-TAATAATGTCAAAATTAAATTAT
1 AATTATTTTAACTAACAAT-TCAAAATTAAATTAT
**
7689423 AATTATTTTAACTAACAATTTTAAATTAAATTAT
1 AATTATTTTAACTAACAATTCAAAATTAAATTAT
7689457 AATTAT
1 AATTAT
7689463 AATTATCACT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 29 0.83
35 6 0.17
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (34 bp):
AATTATTTTAACTAACAATTCAAAATTAAATTAT
Found at i:7694853 original size:21 final size:21
Alignment explanation
Indices: 7694829--7694870 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7694819 TCATCAGATC
*
7694829 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
7694850 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
7694871 AGATGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:7697151 original size:11 final size:11
Alignment explanation
Indices: 7697135--7697167 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7697125 AAAATATAAA
7697135 TTTTATAAATT
1 TTTTATAAATT
*
7697146 TTTTATAAATA
1 TTTTATAAATT
7697157 TTTTA-AAATT
1 TTTTATAAATT
7697167 T
1 T
7697168 AAAATTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 5 0.25
11 15 0.75
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTATAAATT
Found at i:7697170 original size:7 final size:7
Alignment explanation
Indices: 7697158--7697182 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7697148 TTATAAATAT
7697158 TTTAAAA
1 TTTAAAA
7697165 TTTAAAA
1 TTTAAAA
7697172 TTTAAAA
1 TTTAAAA
7697179 TTTA
1 TTTA
7697183 TTTAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:7697195 original size:36 final size:37
Alignment explanation
Indices: 7697112--7697196 Score: 104
Period size: 36 Copynumber: 2.3 Consensus size: 37
7697102 TTGATAAACT
*
7697112 TAAATTATTAATTAAAATATAAATTTTATAAATTTTTTA
1 TAAATTATT--TTAAAATATAAAATTTATAAATTTTTTA
*
7697151 TAAA-TATTTTAAAATTTAAAATTTA-AAATTTATTTA
1 TAAATTATTTTAAAATATAAAATTTATAAATTT-TTTA
7697187 -AAATTATTTT
1 TAAATTATTTT
7697197 GTAATTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
35 9 0.21
36 25 0.60
38 4 0.10
39 4 0.10
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (37 bp):
TAAATTATTTTAAAATATAAAATTTATAAATTTTTTA
Found at i:7697858 original size:38 final size:36
Alignment explanation
Indices: 7697816--7697886 Score: 88
Period size: 38 Copynumber: 1.9 Consensus size: 36
7697806 TCTTTTTAAA
* * *
7697816 CTTTTTTTAACTTTTGTCTTTTTCTTTAATTTTTTTTT
1 CTTTTTGTAACTTTTATATTTTT-TTT-ATTTTTTTTT
*
7697854 CTTTTTGTAAGTTTTATATTTTTTTTATTTTTT
1 CTTTTTGTAACTTTTATATTTTTTTTATTTTTT
7697887 AACAATGTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
36 7 0.24
37 3 0.10
38 19 0.66
ACGTcount: A:0.13, C:0.07, G:0.04, T:0.76
Consensus pattern (36 bp):
CTTTTTGTAACTTTTATATTTTTTTTATTTTTTTTT
Found at i:7698106 original size:14 final size:15
Alignment explanation
Indices: 7698087--7698119 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
7698077 ATCTTTAAAA
7698087 ATAATTTAAAA-ATT
1 ATAATTTAAAATATT
7698101 ATAATTTAAAATATT
1 ATAATTTAAAATATT
7698116 ATAA
1 ATAA
7698120 AACAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAATTTAAAATATT
Found at i:7698230 original size:20 final size:19
Alignment explanation
Indices: 7698175--7698233 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
7698165 TTGAAAGGTC
*
7698175 ATATCTTTAAAATATTT-AA
1 ATAT-TTTATAATATTTAAA
*
7698194 ATATTTTATACTATTTAAA
1 ATATTTTATAATATTTAAA
7698213 ATATATATT-TAATATTTAAA
1 ATAT-T-TTATAATATTTAAA
7698233 A
1 A
7698234 AATAAATTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 10 0.29
19 10 0.29
20 12 0.35
21 2 0.06
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTTATAATATTTAAA
Found at i:7698268 original size:21 final size:21
Alignment explanation
Indices: 7698244--7698386 Score: 69
Period size: 21 Copynumber: 7.8 Consensus size: 21
7698234 AATAAATTCA
7698244 AAAATATATATTTAAAATTTT
1 AAAATATATATTTAAAATTTT
**
7698265 -AAA-A-A-A--T-AAATTCA
1 AAAATATATATTTAAAATTTT
7698279 AAAATATATATTTAAAATTTT
1 AAAATATATATTTAAAATTTT
**
7698300 -AAA-A-A-A--T-AAATTCA
1 AAAATATATATTTAAAATTTT
7698314 AAAATATATATTTAAAATTTT
1 AAAATATATATTTAAAATTTT
**
7698335 -AAA-A-A-A--T-AAATTCA
1 AAAATATATATTTAAAATTTT
7698349 AAAATATATATTTAAAATTTT
1 AAAATATATATTTAAAATTTT
7698370 AAAAT-TAATATTTAAAA
1 AAAATAT-ATATTTAAAA
7698387 ATAATATTTA
Statistics
Matches: 88, Mismatches: 12, Indels: 44
0.61 0.08 0.31
Matches are distributed among these distances:
14 15 0.17
15 12 0.14
16 3 0.03
17 6 0.07
18 6 0.07
19 3 0.03
20 13 0.15
21 30 0.34
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAATATATATTTAAAATTTT
Found at i:7698273 original size:35 final size:35
Alignment explanation
Indices: 7698210--7698411 Score: 338
Period size: 35 Copynumber: 5.8 Consensus size: 35
7698200 TATACTATTT
*
7698210 AAAATATATATTTAATA-TTTAAAAAATAAATTCA
1 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
7698244 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
1 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
7698279 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
1 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
7698314 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
1 AAAATATATATTTAAAATTTTAAAAAATAAATTCA
* *
7698349 AAAATATATATTTAAAATTTT-AAAATTAATATTTA
1 AAAATATATATTTAAAATTTTAAAAAATAA-ATTCA
*
7698384 AAAATA-ATATTTAAAATTTTTAAAAATA
1 AAAATATATATTTAAAATTTTAAAAAATA
7698412 TATATTATAA
Statistics
Matches: 161, Mismatches: 4, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
34 37 0.23
35 124 0.77
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (35 bp):
AAAATATATATTTAAAATTTTAAAAAATAAATTCA
Found at i:7698416 original size:23 final size:23
Alignment explanation
Indices: 7698380--7698456 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
7698370 AAAATTAATA
7698380 TTTAAAAATA-ATATTTAAAATT
1 TTTAAAAATATATATTTAAAATT
**
7698402 TTTAAAAATATATATTATAAAACA
1 TTTAAAAATATATATT-TAAAATT
* *
7698426 TTT-CAAATATATATTTCAAATT
1 TTTAAAAATATATATTTAAAATT
*
7698448 TTTTAAAAT
1 TTTAAAAAT
7698457 TAATAACAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
22 17 0.38
23 20 0.44
24 8 0.18
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
TTTAAAAATATATATTTAAAATT
Found at i:7698517 original size:10 final size:9
Alignment explanation
Indices: 7698467--7698517 Score: 59
Period size: 9 Copynumber: 5.4 Consensus size: 9
7698457 TAATAACAAA
7698467 AAAATAAA-
1 AAAATAAAC
7698475 ATAAATAAAC
1 A-AAATAAAC
7698485 AAAATAAAC
1 AAAATAAAC
*
7698494 AAAATAAAAT
1 AAAAT-AAAC
7698504 AAAATAAGAC
1 AAAATAA-AC
7698514 AAAA
1 AAAA
7698518 ATTAGAGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
8 1 0.03
9 22 0.59
10 14 0.38
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (9 bp):
AAAATAAAC
Found at i:7699959 original size:40 final size:40
Alignment explanation
Indices: 7699915--7699994 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
7699905 ATATCACTGA
*
7699915 ACATCTTCAATACACCATTAATCAAACCAATCAATTGAAT
1 ACATCTTCAATACACCATTAATAAAACCAATCAATTGAAT
* * **
7699955 ACATCTTCAATGCACTATTAATAAAATTAATCAATTGAAT
1 ACATCTTCAATACACCATTAATAAAACCAATCAATTGAAT
7699995 CAATTAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.31
Consensus pattern (40 bp):
ACATCTTCAATACACCATTAATAAAACCAATCAATTGAAT
Found at i:7707196 original size:12 final size:12
Alignment explanation
Indices: 7707179--7707203 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7707169 AAAAGAACAT
7707179 AGGTTTACTTAC
1 AGGTTTACTTAC
7707191 AGGTTTACTTAC
1 AGGTTTACTTAC
7707203 A
1 A
7707204 TATTACAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (12 bp):
AGGTTTACTTAC
Found at i:7707380 original size:29 final size:27
Alignment explanation
Indices: 7707348--7707405 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
7707338 ATGGAGGATT
* *
7707348 TTTTTATCTAATAAAATTAGATAAATTAA
1 TTTTTATAT-ATAAAATTA-AAAAATTAA
*
7707377 TTTTTATATATTAAATTAAAAAATTAA
1 TTTTTATATATAAAATTAAAAAATTAA
7707404 TT
1 TT
7707406 AGTTGTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 10 0.38
28 8 0.31
29 8 0.31
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (27 bp):
TTTTTATATATAAAATTAAAAAATTAA
Found at i:7707548 original size:25 final size:26
Alignment explanation
Indices: 7707516--7707569 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
7707506 TTATTTTAAT
*
7707516 TTTTTAAT-AGTAAAA-ATAAATATAA
1 TTTTTAATAAATAAAACA-AAATATAA
7707541 TTTTTAATAAATAAAACAAAATATAA
1 TTTTTAATAAATAAAACAAAATATAA
7707567 TTT
1 TTT
7707570 CACTCGTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 8 0.31
26 17 0.65
27 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
TTTTTAATAAATAAAACAAAATATAA
Found at i:7708301 original size:3 final size:3
Alignment explanation
Indices: 7708295--7708326 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
7708285 AAAGAAAACA
*
7708295 CAG CAG CAG CAG CAG CAG CAG CAG CAG GAG CA
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CA
7708327 AGAAAAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.34, C:0.31, G:0.34, T:0.00
Consensus pattern (3 bp):
CAG
Found at i:7708343 original size:9 final size:8
Alignment explanation
Indices: 7708326--7708359 Score: 50
Period size: 9 Copynumber: 4.0 Consensus size: 8
7708316 CAGCAGGAGC
7708326 AAGAAAAG
1 AAGAAAAG
7708334 AAGAAGAAG
1 AAGAA-AAG
7708343 AAGAAAAAG
1 AAG-AAAAG
7708352 AAGAAAAG
1 AAGAAAAG
7708360 TAGTAAACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 10 0.42
9 12 0.50
10 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (8 bp):
AAGAAAAG
Found at i:7712287 original size:24 final size:20
Alignment explanation
Indices: 7712241--7712306 Score: 78
Period size: 22 Copynumber: 3.1 Consensus size: 20
7712231 TTAACAAAAG
*
7712241 AAATTGTTTTTAAGATTTTT
1 AAATTATTTTTAAGATTTTT
7712261 AAATATTATTTTTCAAGAATTTTT
1 -AA-ATTATTTTT-AAG-ATTTTT
*
7712285 AAATTATTTTTAATATTTTT
1 AAATTATTTTTAAGATTTTT
7712305 AA
1 AA
7712307 TTTAAATTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 8 0.20
21 4 0.10
22 17 0.43
23 5 0.12
24 6 0.15
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (20 bp):
AAATTATTTTTAAGATTTTT
Found at i:7712293 original size:11 final size:11
Alignment explanation
Indices: 7712255--7712320 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 11
7712245 TGTTTTTAAG
7712255 ATTTTTAAATATT
1 ATTTTT-AA-ATT
* **
7712268 ATTTTTCAAGA
1 ATTTTTAAATT
7712279 ATTTTTAAATT
1 ATTTTTAAATT
7712290 ATTTTTAATATT
1 ATTTTTAA-ATT
*
7712302 TTTAATTTAAATT
1 ATT--TTTAAATT
7712315 ATTTTT
1 ATTTTT
7712321 TTCATTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
11 20 0.48
12 6 0.14
13 11 0.26
14 5 0.12
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (11 bp):
ATTTTTAAATT
Found at i:7712328 original size:24 final size:24
Alignment explanation
Indices: 7712282--7712347 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 24
7712272 TTCAAGAATT
*
7712282 TTTAAATTATTTTTAATATTTTTAA
1 TTTAAATTATTTTT-TTATTTTTAA
7712307 TTTAAATTATTTTTTTCA-TTTTAA
1 TTTAAATTATTTTTTT-ATTTTTAA
* *
7712331 TATAAAATATTTATTTT
1 TTTAAATTATTT-TTTT
7712348 TATATCATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 17 0.47
25 19 0.53
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TTTAAATTATTTTTTTATTTTTAA
Found at i:7713020 original size:36 final size:36
Alignment explanation
Indices: 7712971--7713047 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
7712961 AACAACACAA
*
7712971 AAATTTAACGAGAATTTATAAAGTATATATTGTAAG
1 AAATTTAACGAGAATTTACAAAGTATATATTGTAAG
*
7713007 AAATTTAATGAGAATTTACAAAGTATATATTGTAAG
1 AAATTTAACGAGAATTTACAAAGTATATATTGTAAG
7713043 AAATT
1 AAATT
7713048 ATGTAATAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.48, C:0.03, G:0.13, T:0.36
Consensus pattern (36 bp):
AAATTTAACGAGAATTTACAAAGTATATATTGTAAG
Found at i:7714010 original size:5 final size:5
Alignment explanation
Indices: 7714000--7714040 Score: 64
Period size: 5 Copynumber: 8.0 Consensus size: 5
7713990 TAAACGTGTG
*
7714000 AATAA AATAA AATAA AATAA AATAA AGAAAA AATAA AATAA
1 AATAA AATAA AATAA AATAA AATAA A-ATAA AATAA AATAA
7714041 CACACAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 29 0.88
6 4 0.12
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:7714020 original size:15 final size:16
Alignment explanation
Indices: 7714000--7714040 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
7713990 TAAACGTGTG
*
7714000 AATAAAATAAA-ATAA
1 AATAAAATAAAGAAAA
7714015 AATAAAATAAAGAAAA
1 AATAAAATAAAGAAAA
7714031 AATAAAATAA
1 AATAAAATAA
7714041 CACACAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.17
Consensus pattern (16 bp):
AATAAAATAAAGAAAA
Found at i:7714457 original size:31 final size:31
Alignment explanation
Indices: 7714419--7714481 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
7714409 AAACAAGTTC
7714419 TCCACCTCTTCCATAAAACCCCTTAAGGGTT
1 TCCACCTCTTCCATAAAACCCCTTAAGGGTT
7714450 TCCACCTCTTCCATAAAACCCCTTAAGGGTT
1 TCCACCTCTTCCATAAAACCCCTTAAGGGTT
7714481 T
1 T
7714482 AACTTCAACA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.25, C:0.35, G:0.10, T:0.30
Consensus pattern (31 bp):
TCCACCTCTTCCATAAAACCCCTTAAGGGTT
Found at i:7718519 original size:11 final size:10
Alignment explanation
Indices: 7718491--7718524 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7718481 CCAATTTGTG
7718491 AAAAAAAATA
1 AAAAAAAATA
*
7718501 AAATAAAATA
1 AAAAAAAATA
7718511 AAGAAAAAATA
1 AA-AAAAAATA
7718522 AAA
1 AAA
7718525 TAACACACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:7719773 original size:23 final size:22
Alignment explanation
Indices: 7719746--7719817 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 22
7719736 TAAGGAACAA
7719746 GAAATTATCTCATGAGGGATTAC
1 GAAATTATC-CATGAGGGATTAC
* ** *
7719769 GAAATGATCCACCAAGGGATTAG
1 GAAATTATCCA-TGAGGGATTAC
* *
7719792 GGAATTATCCCTTGAGGGATT-C
1 GAAATTAT-CCATGAGGGATTAC
7719814 GAAA
1 GAAA
7719818 ATGATCTATG
Statistics
Matches: 36, Mismatches: 11, Indels: 5
0.69 0.21 0.10
Matches are distributed among these distances:
22 5 0.14
23 29 0.81
24 2 0.06
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (22 bp):
GAAATTATCCATGAGGGATTAC
Found at i:7719879 original size:23 final size:23
Alignment explanation
Indices: 7719853--7719927 Score: 80
Period size: 23 Copynumber: 3.2 Consensus size: 23
7719843 GCCCCTTAAA
7719853 GGATTAGGAAATGATCTCTTGAG
1 GGATTAGGAAATGATCTCTTGAG
* * **
7719876 GGATTTACGG-ATTTATCTCCCGAG
1 GGA-TTA-GGAAATGATCTCTTGAG
*
7719900 GGATTAGGAAATGATCCCTTGAG
1 GGATTAGGAAATGATCTCTTGAG
7719923 GGATT
1 GGATT
7719928 GAAAATATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
22 2 0.05
23 20 0.50
24 16 0.40
25 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (23 bp):
GGATTAGGAAATGATCTCTTGAG
Found at i:7726303 original size:16 final size:16
Alignment explanation
Indices: 7726282--7726315 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7726272 ACAATCGATA
7726282 GATAATTTTACTTGTG
1 GATAATTTTACTTGTG
7726298 GATAATTTTACTTGTG
1 GATAATTTTACTTGTG
7726314 GA
1 GA
7726316 CGAGAGGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.06, G:0.21, T:0.47
Consensus pattern (16 bp):
GATAATTTTACTTGTG
Found at i:7734164 original size:95 final size:94
Alignment explanation
Indices: 7734054--7734244 Score: 319
Period size: 95 Copynumber: 2.0 Consensus size: 94
7734044 CACCATTTAA
*
7734054 AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATTTATTT
1 AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATATATTT
7734119 TAAAATAAAAAAACTAATAAATAATAAAAG
66 TAAAAT-AAAAAACTAATAAATAATAAAAG
* * * *
7734149 AATATTGTGCACCAACTCGTACATTATTTAAAGTTTACCAACTTTAAACTTAATTTTATATATTT
1 AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATATATTT
*
7734214 TAAAATAAAAAATTAATAAATAATAAAAG
66 TAAAATAAAAAACTAATAAATAATAAAAG
7734243 AA
1 AA
7734245 GTGTTGGGTT
Statistics
Matches: 90, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
94 24 0.27
95 66 0.73
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (94 bp):
AATATTGTACACCAACTAGTACATTAGTTAAAATTTACCAACTTTAAACTTAATTTTATATATTT
TAAAATAAAAAACTAATAAATAATAAAAG
Found at i:7738193 original size:3 final size:3
Alignment explanation
Indices: 7738185--7738228 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
7738175 TTGCACGAAC
* * * *
7738185 TGT TGT TGT TGT TGT TGT TGT TGC TGC TGC TGT TGC TGT TGT TG
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TG
7738229 ATCCAATTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.00, C:0.09, G:0.34, T:0.57
Consensus pattern (3 bp):
TGT
Found at i:7742936 original size:17 final size:16
Alignment explanation
Indices: 7742909--7742943 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7742899 TCCCAGAATA
*
7742909 TTTGTTTGTTTTTTCT
1 TTTGTTTGTTTATTCT
7742925 TTTGTATTGTTTATTCT
1 TTTGT-TTGTTTATTCT
7742942 TT
1 TT
7742944 CACATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.06, C:0.06, G:0.11, T:0.77
Consensus pattern (16 bp):
TTTGTTTGTTTATTCT
Done.