Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 250 of 295
Found at i:80418500 original size:22 final size:22
Alignment explanation
Indices: 80418440--80418515 Score: 73
Period size: 22 Copynumber: 3.3 Consensus size: 22
80418430 AGAAAATTAT
*
80418440 TTAA-TTGAGAAATTAATTTAG
1 TTAATTTGATAAATTAATTTAG
80418461 TTAATTTGATTAGTTAAATTAATTTAG
1 TTAATTTG---A--TAAATTAATTTAG
* *
80418488 TTAATTTGATAAATTAATTAAA
1 TTAATTTGATAAATTAATTTAG
80418510 TTAATT
1 TTAATT
80418516 ATTAATATTT
Statistics
Matches: 46, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
21 4 0.09
22 20 0.43
24 1 0.02
25 1 0.02
27 20 0.43
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (22 bp):
TTAATTTGATAAATTAATTTAG
Found at i:80418511 original size:27 final size:27
Alignment explanation
Indices: 80418449--80418508 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
80418439 TTTAATTGAG
* *
80418449 AAATTAATTTAGTTAATTTGATTAGTT
1 AAATTAATTTAGTTAATTTGATAAATT
80418476 AAATTAATTTAGTTAATTTGATAAATT
1 AAATTAATTTAGTTAATTTGATAAATT
80418503 -AATTAA
1 AAATTAA
80418509 ATTAATTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 6 0.19
27 25 0.81
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.48
Consensus pattern (27 bp):
AAATTAATTTAGTTAATTTGATAAATT
Found at i:80420603 original size:19 final size:19
Alignment explanation
Indices: 80420579--80420622 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
80420569 AATAAATATA
80420579 TTTTTTCGATTTTCTT-CTT
1 TTTTTTCGATTTT-TTGCTT
* *
80420598 TTTTTTTGGTTTTTTGCTT
1 TTTTTTCGATTTTTTGCTT
80420617 TTTTTT
1 TTTTTT
80420623 ATCACAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.02, C:0.09, G:0.09, T:0.80
Consensus pattern (19 bp):
TTTTTTCGATTTTTTGCTT
Found at i:80421631 original size:18 final size:19
Alignment explanation
Indices: 80421605--80421645 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
80421595 ATAAATAAAC
*
80421605 TAAACCAAAATAA-AATAA
1 TAAAACAAAATAATAATAA
80421623 TAAAACAAAATAATAATAA
1 TAAAACAAAATAATAATAA
80421642 TAAA
1 TAAA
80421646 CTCAATGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (19 bp):
TAAAACAAAATAATAATAA
Found at i:80421772 original size:19 final size:20
Alignment explanation
Indices: 80421744--80421833 Score: 80
Period size: 22 Copynumber: 4.4 Consensus size: 20
80421734 TAAGTATAGG
*
80421744 AATAATAAATTAAAAATAA-
1 AATAAAAAATTAAAAATAAT
80421763 AATAAAAAATTAGTAAAATAAT
1 AATAAAAAATTA--AAAATAAT
*
80421785 AATAAATAATATAATAAATAAT
1 AATAAAAAAT-TAA-AAATAAT
80421807 AATAAATAGAA-T-AAAATAA-
1 AATAAA-A-AATTAAAAATAAT
80421826 AATAAAAA
1 AATAAAAA
80421834 TGGGGTGGCT
Statistics
Matches: 61, Mismatches: 3, Indels: 16
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.02
18 1 0.02
19 17 0.28
20 6 0.10
21 9 0.15
22 23 0.38
23 2 0.03
24 2 0.03
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (20 bp):
AATAAAAAATTAAAAATAAT
Found at i:80421791 original size:10 final size:10
Alignment explanation
Indices: 80421744--80421831 Score: 62
Period size: 10 Copynumber: 8.9 Consensus size: 10
80421734 TAAGTATAGG
80421744 AATAATAAAT
1 AATAATAAAT
80421754 --TAA-AAAT
1 AATAATAAAT
*
80421761 AA-AATAAAA
1 AATAATAAAT
*
80421770 AATTAGTAAAAT
1 AA-TAAT-AAAT
80421782 AATAATAAAT
1 AATAATAAAT
80421792 AATATAATAAAT
1 -A-ATAATAAAT
80421804 AATAATAAAT
1 AATAATAAAT
*
80421814 -AGAATAAAAT
1 AATAAT-AAAT
80421824 AA-AATAAA
1 AATAATAAA
80421832 AATGGGGTGG
Statistics
Matches: 63, Mismatches: 5, Indels: 21
0.71 0.06 0.24
Matches are distributed among these distances:
7 4 0.06
8 5 0.08
9 12 0.19
10 20 0.32
11 8 0.13
12 14 0.22
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (10 bp):
AATAATAAAT
Found at i:80421828 original size:15 final size:14
Alignment explanation
Indices: 80421757--80421831 Score: 59
Period size: 15 Copynumber: 5.2 Consensus size: 14
80421747 AATAAATTAA
80421757 AAATAAAATAAAA-
1 AAATAAAATAAAAT
80421770 AATTAGTAAAATAATAAT
1 AA--A-TAAAATAA-AAT
*
80421788 AAAT--AATATAAT
1 AAATAAAATAAAAT
80421800 AAATAATAAT-AAAT
1 AAATAA-AATAAAAT
80421814 AGAATAAAATAAAAT
1 A-AATAAAATAAAAT
80421829 AAA
1 AAA
80421832 AATGGGGTGG
Statistics
Matches: 50, Mismatches: 2, Indels: 19
0.70 0.03 0.27
Matches are distributed among these distances:
12 7 0.14
13 6 0.12
14 9 0.18
15 15 0.30
16 9 0.18
17 2 0.04
18 2 0.04
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:80422394 original size:13 final size:13
Alignment explanation
Indices: 80422378--80422403 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80422368 TTTCTTCTTC
80422378 TTTTTTATTTTTA
1 TTTTTTATTTTTA
80422391 TTTTTTATTTTTA
1 TTTTTTATTTTTA
80422404 AGATTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:80423630 original size:55 final size:55
Alignment explanation
Indices: 80423569--80423679 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
80423559 AATAAATTAA
80423569 TATGCAATTTTTTTAAAGGTTTAAGAAATTTACCAAATTGTTCGTTAGTGTGGTC
1 TATGCAATTTTTTTAAAGGTTTAAGAAATTTACCAAATTGTTCGTTAGTGTGGTC
80423624 TATGCAATTTTTTTAAAGGTTTAAGAAATTTACCAAATTGTTCGTTAGTGTGGTC
1 TATGCAATTTTTTTAAAGGTTTAAGAAATTTACCAAATTGTTCGTTAGTGTGGTC
80423679 T
1 T
80423680 TTCTCTGTTG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.29, C:0.09, G:0.18, T:0.44
Consensus pattern (55 bp):
TATGCAATTTTTTTAAAGGTTTAAGAAATTTACCAAATTGTTCGTTAGTGTGGTC
Found at i:80428174 original size:5 final size:6
Alignment explanation
Indices: 80428135--80428173 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
80428125 AAAAAAGTAG
* * *
80428135 AAAATA AGAATT AAACTA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
80428174 TGCAATAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.77, C:0.03, G:0.03, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:80431100 original size:18 final size:18
Alignment explanation
Indices: 80431077--80431111 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
80431067 AGAAATAGTT
*
80431077 GCAAAATAATACATAAAA
1 GCAAAACAATACATAAAA
80431095 GCAAAACAATACATAAA
1 GCAAAACAATACATAAA
80431112 TGCTCAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.66, C:0.14, G:0.06, T:0.14
Consensus pattern (18 bp):
GCAAAACAATACATAAAA
Found at i:80434808 original size:21 final size:22
Alignment explanation
Indices: 80434782--80434828 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
80434772 CTCTGCTCAA
*
80434782 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
80434803 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
80434825 ACTC
1 ACTC
80434829 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:80441110 original size:20 final size:21
Alignment explanation
Indices: 80441085--80441126 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
80441075 TGGACAAATA
*
80441085 ATTAAAATTT-TTAAAATATT
1 ATTAAAATTTATAAAAATATT
80441105 ATTAAAATTTATAAAAATATT
1 ATTAAAATTTATAAAAATATT
80441126 A
1 A
80441127 CAATTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATTAAAATTTATAAAAATATT
Found at i:80441121 original size:10 final size:10
Alignment explanation
Indices: 80441085--80441122 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
80441075 TGGACAAATA
80441085 ATTAAAATTT
1 ATTAAAATTT
80441095 -TTAAAATATT
1 ATTAAAAT-TT
80441105 ATTAAAATTT
1 ATTAAAATTT
*
80441115 ATAAAAAT
1 ATTAAAAT
80441123 ATTACAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 7 0.28
10 11 0.44
11 7 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATTAAAATTT
Found at i:80441125 original size:18 final size:18
Alignment explanation
Indices: 80441080--80441131 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
80441070 AAATTTGGAC
*
80441080 AAATAATTAAAATTTTTAA
1 AAAT-ATTAAAATTTATAA
80441099 AATATTATTAAAATTTATAA
1 AA-A-TATTAAAATTTATAA
*
80441119 AAATATTACAATT
1 AAATATTAAAATT
80441132 AATTTTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
18 9 0.31
19 3 0.10
20 16 0.55
21 1 0.03
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATATTAAAATTTATAA
Found at i:80445587 original size:48 final size:48
Alignment explanation
Indices: 80445419--80445595 Score: 223
Period size: 48 Copynumber: 3.7 Consensus size: 48
80445409 AATGTTTGAA
* * * * *
80445419 ACAAGTTCATGCAAATATGCGTGCCTATCAAGTTCATTCAAA-ATTTT
1 ACAAGTTCATGCAAATATACATGACAATCAAGTTCATTTAAATATTTT
* * *
80445466 ACAAGTTCATGCAAATATACATGCCCAA-CAAATTTATTTAAATATTTT
1 ACAAGTTCATGCAAATATACATG-ACAATCAAGTTCATTTAAATATTTT
*
80445514 ACAAGTTCATGCAAATATACATGACAATCAAGTTCGTTTAAATATTTT
1 ACAAGTTCATGCAAATATACATGACAATCAAGTTCATTTAAATATTTT
* **
80445562 ACAAGTTTATGCAAATATATGTGACAATCAAGTT
1 ACAAGTTCATGCAAATATACATGACAATCAAGTT
80445596 TATGCAAATA
Statistics
Matches: 114, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
47 35 0.31
48 79 0.69
ACGTcount: A:0.39, C:0.16, G:0.11, T:0.34
Consensus pattern (48 bp):
ACAAGTTCATGCAAATATACATGACAATCAAGTTCATTTAAATATTTT
Found at i:80446122 original size:25 final size:25
Alignment explanation
Indices: 80446085--80446136 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
80446075 CTAGGCAGGA
*
80446085 TACCCAATGGACAACCGACAGTCTC
1 TACCCAATCGACAACCGACAGTCTC
* * *
80446110 TACCCAGTCGACAATCGACAGTTTC
1 TACCCAATCGACAACCGACAGTCTC
80446135 TA
1 TA
80446137 TCACCCGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (25 bp):
TACCCAATCGACAACCGACAGTCTC
Found at i:80448340 original size:30 final size:30
Alignment explanation
Indices: 80448306--80448368 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
80448296 ACTTATTTTA
80448306 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
80448336 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
80448366 TTG
1 TTG
80448369 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:80448975 original size:27 final size:27
Alignment explanation
Indices: 80448937--80448993 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
80448927 TCAATCAACA
80448937 AATTAGAGTGAATCAAAGGTAATATTC
1 AATTAGAGTGAATCAAAGGTAATATTC
80448964 AATTAGAGTGAATCAAAGGTAATATTC
1 AATTAGAGTGAATCAAAGGTAATATTC
80448991 AAT
1 AAT
80448994 CCTAAACCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.30
Consensus pattern (27 bp):
AATTAGAGTGAATCAAAGGTAATATTC
Found at i:80459858 original size:59 final size:60
Alignment explanation
Indices: 80459787--80459903 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 60
80459777 ATCACTTTAA
* * * * *
80459787 TATTAAATTAATATAATATTTATC-AAGATAAATATTAGATTATATTTAATATTAAATGT
1 TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATGT
* *
80459846 TATTAAAATAATAGAATGTTTATCTTGTAGATAAACATTAAATTAAATTTAATATTAA
1 TATTAAAATAATAGAATATTTATC-T-AAGATAAACATTAAATTAAATTTAATATTAA
80459904 GATAATTACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.44
62 27 0.56
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.44
Consensus pattern (60 bp):
TATTAAAATAATAGAATATTTATCTAAGATAAACATTAAATTAAATTTAATATTAAATGT
Found at i:80464303 original size:2 final size:2
Alignment explanation
Indices: 80464298--80464322 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
80464288 TGGTGAATTA
80464298 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
80464323 ACATTATGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:80464416 original size:2 final size:2
Alignment explanation
Indices: 80464409--80464434 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
80464399 CAATTTTATG
80464409 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
80464435 GTGGAAGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:80464531 original size:26 final size:28
Alignment explanation
Indices: 80464470--80464536 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
80464460 AATATCTTAA
* *
80464470 TTCTCTTTTACTTTTTTTTTTTTGAGAT
1 TTCTCTCTTACTTTTTTTTTTGTGAGAT
*
80464498 TTCT-TCTTACTTTTTTTTTTGT-A-TT
1 TTCTCTCTTACTTTTTTTTTTGTGAGAT
*
80464523 TTCTCTCTTTCTTT
1 TTCTCTCTTACTTT
80464537 ATAGTATATA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 5 0.15
26 9 0.26
27 16 0.47
28 4 0.12
ACGTcount: A:0.07, C:0.15, G:0.04, T:0.73
Consensus pattern (28 bp):
TTCTCTCTTACTTTTTTTTTTGTGAGAT
Found at i:80465985 original size:20 final size:21
Alignment explanation
Indices: 80465938--80465985 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
80465928 GAGCAATTTA
* *
80465938 ATTTTTTCTTTTATGTTTTTT
1 ATTTTTCCTTTTATGTTCTTT
**
80465959 AACTTTCCTTTTAT-TTCTTT
1 ATTTTTCCTTTTATGTTCTTT
80465979 ATTTTTC
1 ATTTTTC
80465986 ATTCTCTTCT
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.12, C:0.12, G:0.02, T:0.73
Consensus pattern (21 bp):
ATTTTTCCTTTTATGTTCTTT
Found at i:80467328 original size:5 final size:5
Alignment explanation
Indices: 80467313--80467380 Score: 90
Period size: 5 Copynumber: 14.2 Consensus size: 5
80467303 TGCTAAAATA
80467313 TGAATT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAA- T-AAT
1 TGAA-T TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
*
80467362 T--AT TGATT TGAAT TGAAT T
1 TGAAT TGAAT TGAAT TGAAT T
80467381 TATTCATTTA
Statistics
Matches: 57, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
3 5 0.09
4 2 0.04
5 46 0.81
6 4 0.07
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (5 bp):
TGAAT
Found at i:80471970 original size:29 final size:30
Alignment explanation
Indices: 80471931--80472000 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 30
80471921 TAGATACACA
*
80471931 AACCTTATATGTGCGAACCC-GTAGATGCG
1 AACCCTATATGTGCGAACCCTGTAGATGCG
* * * *
80471960 AACCCTGTATGTGTGAACCCTTTATATGCG
1 AACCCTATATGTGCGAACCCTGTAGATGCG
80471990 AACCCTATATG
1 AACCCTATATG
80472001 CGTGAGCAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 17 0.50
30 17 0.50
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (30 bp):
AACCCTATATGTGCGAACCCTGTAGATGCG
Found at i:80471979 original size:15 final size:15
Alignment explanation
Indices: 80471938--80472000 Score: 67
Period size: 15 Copynumber: 4.3 Consensus size: 15
80471928 ACAAACCTTA
80471938 TATGTGCGAACCC-G
1 TATGTGCGAACCCTG
80471952 TA-GATGCGAACCCTG
1 TATG-TGCGAACCCTG
* *
80471967 TATGTGTGAACCCTT
1 TATGTGCGAACCCTG
* *
80471982 TATATGCGAACCCTA
1 TATGTGCGAACCCTG
80471997 TATG
1 TATG
80472001 CGTGAGCAGA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
13 1 0.03
14 11 0.28
15 27 0.68
16 1 0.03
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (15 bp):
TATGTGCGAACCCTG
Found at i:80471991 original size:30 final size:29
Alignment explanation
Indices: 80471931--80472005 Score: 87
Period size: 30 Copynumber: 2.6 Consensus size: 29
80471921 TAGATACACA
* *
80471931 AACCTTATATGTGCGAACCCGTAGATGCG
1 AACCCTATATGTGTGAACCCGTAGATGCG
* * *
80471960 AACCCTGTATGTGTGAACCCTTTATATGCG
1 AACCCTATATGTGTGAACCC-GTAGATGCG
*
80471990 AACCCTATATGCGTGA
1 AACCCTATATGTGTGA
80472006 GCAGATCCTA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 17 0.45
30 21 0.55
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (29 bp):
AACCCTATATGTGTGAACCCGTAGATGCG
Found at i:80476198 original size:41 final size:41
Alignment explanation
Indices: 80476117--80476198 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 41
80476107 AAACATAAAA
* * * ** *
80476117 CAAAGATAAATTTATCTAATTAAAGTTGAAAAGTCCAAATC
1 CAAAAATAAATTTATCTAAGTAAAATCCAAAAGTCAAAATC
80476158 CAAAAATAAATTTATCTAAGTAAAATCCAAAAG-CTAAAATC
1 CAAAAATAAATTTATCTAAGTAAAATCCAAAAGTC-AAAATC
80476199 TGAAAAACAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 1 0.03
41 33 0.97
ACGTcount: A:0.52, C:0.13, G:0.07, T:0.27
Consensus pattern (41 bp):
CAAAAATAAATTTATCTAAGTAAAATCCAAAAGTCAAAATC
Found at i:80476680 original size:7 final size:7
Alignment explanation
Indices: 80476670--80476694 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80476660 GGATTTTGGG
80476670 TTTTGAT
1 TTTTGAT
80476677 TTTTGAT
1 TTTTGAT
80476684 TTTTGAT
1 TTTTGAT
80476691 TTTT
1 TTTT
80476695 CTTTGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (7 bp):
TTTTGAT
Found at i:80489593 original size:36 final size:37
Alignment explanation
Indices: 80489540--80489610 Score: 108
Period size: 36 Copynumber: 1.9 Consensus size: 37
80489530 TGCTCTACAT
*
80489540 AAAACTATGATCATATATTTTGTTCTCTGAAAGAATTC
1 AAAACTAT-ATCATATATTTTGTTCTATGAAAGAATTC
*
80489578 AAAACTAT-TCATATATTTTGTTCTATGTAAGAA
1 AAAACTATATCATATATTTTGTTCTATGAAAGAA
80489611 GGCAATCAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 23 0.74
38 8 0.26
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (37 bp):
AAAACTATATCATATATTTTGTTCTATGAAAGAATTC
Found at i:80492021 original size:25 final size:26
Alignment explanation
Indices: 80491993--80492043 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
80491983 ATAATTATTG
*
80491993 TTATTGTT-ATTAAATTTTAATAAAA
1 TTATTGTTAAATAAATTTTAATAAAA
*
80492018 TTATTGTTAAATATATTTTAATAAAA
1 TTATTGTTAAATAAATTTTAATAAAA
80492044 ATAAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (26 bp):
TTATTGTTAAATAAATTTTAATAAAA
Found at i:80492154 original size:23 final size:21
Alignment explanation
Indices: 80492128--80492171 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
80492118 TATTATATGA
80492128 ATTAAAAAATCATAATATATAAT
1 ATTAAAAAA--ATAATATATAAT
*
80492151 ATTATAAAAATAATATATAAT
1 ATTAAAAAAATAATATATAAT
80492172 CTACTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 12 0.60
23 8 0.40
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
ATTAAAAAAATAATATATAAT
Found at i:80494576 original size:22 final size:23
Alignment explanation
Indices: 80494549--80494591 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
80494539 AGCTGGTCAT
80494549 AAAACAA-CCAAAACCCAAATAA
1 AAAACAATCCAAAACCCAAATAA
* *
80494571 AAAACAATCCGAACCCCAAAT
1 AAAACAATCCAAAACCCAAAT
80494592 TGGCAAAACC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.60, C:0.30, G:0.02, T:0.07
Consensus pattern (23 bp):
AAAACAATCCAAAACCCAAATAA
Found at i:80495312 original size:13 final size:14
Alignment explanation
Indices: 80495286--80495314 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
80495276 TATTTCAACT
80495286 AATTTAACAAAAAA
1 AATTTAACAAAAAA
80495300 AATTTAA-AAAAAA
1 AATTTAACAAAAAA
80495313 AA
1 AA
80495315 GAAATCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
AATTTAACAAAAAA
Found at i:80502179 original size:16 final size:17
Alignment explanation
Indices: 80502145--80502184 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
80502135 ACTTAGCATG
*
80502145 TCTAATAACCATTATAA
1 TCTAATAACCATTACAA
80502162 TCTAATAA-CATTACAA
1 TCTAATAACCATTACAA
*
80502178 TCCAATA
1 TCTAATA
80502185 CAACTAATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (17 bp):
TCTAATAACCATTACAA
Found at i:80502759 original size:22 final size:22
Alignment explanation
Indices: 80502710--80502773 Score: 67
Period size: 23 Copynumber: 2.9 Consensus size: 22
80502700 AAAAGTCAAA
**
80502710 TTACAGGGAGAAGAAAATTTGAC
1 TTACAGGGAGAA-AAAATTAAAC
80502733 TTACAGGGAGGAAAAAATTAAAC
1 TTACAGGGA-GAAAAAATTAAAC
* *
80502756 -TACATGGACAAAAAATTA
1 TTACAGGGAGAAAAAATTA
80502774 GAATTATAGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.25
22 7 0.19
23 17 0.47
24 3 0.08
ACGTcount: A:0.50, C:0.09, G:0.20, T:0.20
Consensus pattern (22 bp):
TTACAGGGAGAAAAAATTAAAC
Found at i:80502770 original size:21 final size:21
Alignment explanation
Indices: 80502744--80502814 Score: 88
Period size: 22 Copynumber: 3.3 Consensus size: 21
80502734 TACAGGGAGG
* *
80502744 AAAAAATTAAACTACATGGAC
1 AAAAAATTAAATTATATGGAC
*
80502765 AAAAAATTAGAATTATAGGGACC
1 AAAAAATTA-AATTATATGGA-C
*
80502788 AAAAATTTAAATTATATGGAC
1 AAAAAATTAAATTATATGGAC
80502809 AAAAAA
1 AAAAAA
80502815 AAGACGAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
21 15 0.36
22 18 0.43
23 9 0.21
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.23
Consensus pattern (21 bp):
AAAAAATTAAATTATATGGAC
Found at i:80502786 original size:22 final size:22
Alignment explanation
Indices: 80502708--80502814 Score: 83
Period size: 22 Copynumber: 4.8 Consensus size: 22
80502698 AAAAAAGTCA
* *
80502708 AATTACAGGGAGAAGAAAATTTG
1 AATTACAGGGACAA-AAAATTAG
* *
80502731 ACTTACAGGGAGGAAAAAATTA-
1 AATTACAGGGA-CAAAAAATTAG
* *
80502753 AACTACATGGACAAAAAATTAG
1 AATTACAGGGACAAAAAATTAG
* *
80502775 AATTATAGGGACCAAAAATTTA-
1 AATTACAGGGA-CAAAAAATTAG
* *
80502797 AATTATATGGACAAAAAA
1 AATTACAGGGACAAAAAA
80502815 AAGACGAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
21 15 0.22
22 26 0.38
23 25 0.36
24 3 0.04
ACGTcount: A:0.52, C:0.08, G:0.18, T:0.21
Consensus pattern (22 bp):
AATTACAGGGACAAAAAATTAG
Found at i:80502792 original size:44 final size:43
Alignment explanation
Indices: 80502673--80502814 Score: 122
Period size: 44 Copynumber: 3.1 Consensus size: 43
80502663 TACATAAACT
* * *
80502673 AAAAATATTGAATTATAGGGACGAAAAAAAAGTCAAATTACAGGGAG
1 AAAAA-ATTGAATTATAGGGAC--AAAAAAA-TTAAATTACATGGAC
* * ** *
80502720 AAGAAAATTTGACTTACAGGGAGGAAAAAATTAAACTACATGGAC
1 AA-AAAA-TTGAATTATAGGGACAAAAAAATTAAATTACATGGAC
* * *
80502765 AAAAAATTAGAATTATAGGGACCAAAAATTTAAATTATATGGAC
1 AAAAAATT-GAATTATAGGGACAAAAAAATTAAATTACATGGAC
80502809 AAAAAA
1 AAAAAA
80502815 AAGACGAAAT
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
43 2 0.03
44 38 0.49
45 13 0.17
46 6 0.08
47 3 0.04
48 15 0.19
ACGTcount: A:0.54, C:0.08, G:0.18, T:0.21
Consensus pattern (43 bp):
AAAAAATTGAATTATAGGGACAAAAAAATTAAATTACATGGAC
Found at i:80518083 original size:24 final size:25
Alignment explanation
Indices: 80518027--80518085 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
80518017 AACTCTTTTC
*
80518027 ATTTATTTTAAATTATTCTACTATT
1 ATTTATTTTAAATTATTCTACTAAT
*
80518052 ATTTATTTTAATATTCTT-TA-TAAT
1 ATTTATTTTAA-ATTATTCTACTAAT
80518076 ATTTATTTTA
1 ATTTATTTTA
80518086 CACTTTTATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 13 0.42
25 13 0.42
26 5 0.16
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (25 bp):
ATTTATTTTAAATTATTCTACTAAT
Found at i:80525546 original size:17 final size:17
Alignment explanation
Indices: 80525524--80525556 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
80525514 GGTGATCTCT
80525524 TAGTCTTAATAAGCTCG
1 TAGTCTTAATAAGCTCG
80525541 TAGTCTTAATAAGCTC
1 TAGTCTTAATAAGCTC
80525557 ACAATTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (17 bp):
TAGTCTTAATAAGCTCG
Found at i:80531249 original size:18 final size:18
Alignment explanation
Indices: 80531226--80531318 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
80531216 CCCAACTACT
*
80531226 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
80531244 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
80531262 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
80531280 GTATATGTGAATAGTACC
1 GTATACGTGAATAGTACC
80531298 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
80531316 GTA
1 GTA
80531319 AACGGTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:80533909 original size:17 final size:18
Alignment explanation
Indices: 80533878--80533920 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
80533868 AAAAAATATG
80533878 ATAATTATAAATTTAACA
1 ATAATTATAAATTTAACA
*
80533896 ATAATTAT-AATTTAATA
1 ATAATTATAAATTTAACA
*
80533913 AAAATTAT
1 ATAATTAT
80533921 GATAATTGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAATTATAAATTTAACA
Found at i:80533922 original size:44 final size:44
Alignment explanation
Indices: 80533868--80533951 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
80533858 ATTATACATA
* * *
80533868 AAAAAATATGATAATTATAAATTTAACAATAATTATAATTTAAT
1 AAAAAATATGATAATTACAAATTTAAAAATAATTAAAATTTAAT
* * *
80533912 AAAAATTATGATAATTGCACATTTAAAAATAATTAAAATT
1 AAAAAATATGATAATTACAAATTTAAAAATAATTAAAATT
80533952 AAAATTACTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (44 bp):
AAAAAATATGATAATTACAAATTTAAAAATAATTAAAATTTAAT
Found at i:80536083 original size:6 final size:6
Alignment explanation
Indices: 80536072--80536107 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
80536062 AAATATTGTG
80536072 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT ATAATT
80536108 TAAAATAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
ATAATT
Found at i:80538485 original size:6 final size:6
Alignment explanation
Indices: 80538465--80538496 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
80538455 TTAAAAATTG
80538465 ATTTTA ATATTTA ATTTTA ATTTTA ATTTTA A
1 ATTTTA AT-TTTA ATTTTA ATTTTA ATTTTA A
80538497 ATAACTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (6 bp):
ATTTTA
Found at i:80544165 original size:18 final size:18
Alignment explanation
Indices: 80544124--80544166 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
80544114 TATAATTGAT
***
80544124 GTGGAGGATATATTTGAG
1 GTGGAGGATATATGAAAG
*
80544142 GAGGAGGATATATGAAAG
1 GTGGAGGATATATGAAAG
80544160 GTGGAGG
1 GTGGAGG
80544167 TGGGTGATAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (18 bp):
GTGGAGGATATATGAAAG
Found at i:80548219 original size:23 final size:23
Alignment explanation
Indices: 80548165--80548225 Score: 94
Period size: 21 Copynumber: 2.8 Consensus size: 23
80548155 GACGCATAAA
80548165 GTGCCT-AAA-ACGACACACGAG
1 GTGCCTGAAATACGACACACGAG
80548186 GTGCCTG--ATACGACACACGAG
1 GTGCCTGAAATACGACACACGAG
80548207 GTGCCTGAAATACGACACA
1 GTGCCTGAAATACGACACA
80548226 TAAAGTGCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
20 1 0.03
21 25 0.69
23 10 0.28
ACGTcount: A:0.34, C:0.28, G:0.25, T:0.13
Consensus pattern (23 bp):
GTGCCTGAAATACGACACACGAG
Found at i:80548233 original size:23 final size:23
Alignment explanation
Indices: 80548162--80548237 Score: 79
Period size: 21 Copynumber: 3.5 Consensus size: 23
80548152 TATGACGCAT
80548162 AAAGTGCCT-AAA-ACGACACAC
1 AAAGTGCCTGAAATACGACACAC
* *
80548183 GAGGTGCCTG--ATACGACACAC
1 AAAGTGCCTGAAATACGACACAC
* * *
80548204 GAGGTGCCTGAAATACGACACAT
1 AAAGTGCCTGAAATACGACACAC
80548227 AAAGTGCCTGA
1 AAAGTGCCTGA
80548238 TCAGTAAAGC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
20 1 0.02
21 26 0.57
23 19 0.41
ACGTcount: A:0.37, C:0.25, G:0.24, T:0.14
Consensus pattern (23 bp):
AAAGTGCCTGAAATACGACACAC
Found at i:80549757 original size:29 final size:28
Alignment explanation
Indices: 80549725--80549779 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
80549715 GCTCGAATGC
80549725 TTTCTGTTCTCTT-TTCTCTATTCTTTTTG
1 TTTCTGTTCT-TTATTCTCT-TTCTTTTTG
* *
80549754 TTTCTTTTCTTTATTCTGTTTCTTTT
1 TTTCTGTTCTTTATTCTCTTTCTTTT
80549780 ATTCACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.73
Consensus pattern (28 bp):
TTTCTGTTCTTTATTCTCTTTCTTTTTG
Found at i:80549762 original size:22 final size:23
Alignment explanation
Indices: 80549724--80549770 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
80549714 TGCTCGAATG
80549724 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
80549747 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
80549769 CT
1 CT
80549771 GTTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:80549782 original size:14 final size:12
Alignment explanation
Indices: 80549734--80549783 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
80549724 CTTTCTGTTC
*
80549734 TCTTTTCTCTAT
1 TCTTTTCTTTAT
*
80549746 TCTTTT-TGT-T
1 TCTTTTCTTTAT
80549756 TCTTTTCTTTAT
1 TCTTTTCTTTAT
80549768 TCTGTTTCTTTTAT
1 TCT-TTTC-TTTAT
80549782 TC
1 TC
80549784 ACTTTAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 7 0.22
11 4 0.12
12 10 0.31
13 4 0.12
14 7 0.22
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.72
Consensus pattern (12 bp):
TCTTTTCTTTAT
Found at i:80556097 original size:23 final size:23
Alignment explanation
Indices: 80556015--80556101 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
80556005 CCTGATTAGT
*
80556015 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
80556037 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
80556057 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
*
80556080 ATACGACACATAAAGTGCCTGA
1 ATACGACACACAAAGTGCCTGA
80556102 TCAGTAAAGC
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.62
22 1 0.02
23 19 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:80557621 original size:29 final size:28
Alignment explanation
Indices: 80557589--80557643 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 28
80557579 GCTCGAATAC
80557589 TTTCTGTTCTCTT-TTCTCTATTCTTTTTG
1 TTTCTGTTCT-TTATTCTCT-TTCTTTTTG
* *
80557618 TTTCTTTTCTTTATTCTGTTTCTTTT
1 TTTCTGTTCTTTATTCTCTTTCTTTT
80557644 ATTCACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 9 0.39
29 14 0.61
ACGTcount: A:0.04, C:0.18, G:0.05, T:0.73
Consensus pattern (28 bp):
TTTCTGTTCTTTATTCTCTTTCTTTTTG
Found at i:80557626 original size:22 final size:23
Alignment explanation
Indices: 80557588--80557634 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
80557578 TGCTCGAATA
80557588 CTTTCTGTTCTCTTTTCTCTATT
1 CTTTCTGTTCTCTTTTCTCTATT
* *
80557611 CTTTTTGTT-TCTTTTCTTTATT
1 CTTTCTGTTCTCTTTTCTCTATT
80557633 CT
1 CT
80557635 GTTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.70
Consensus pattern (23 bp):
CTTTCTGTTCTCTTTTCTCTATT
Found at i:80557646 original size:14 final size:12
Alignment explanation
Indices: 80557598--80557647 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
80557588 CTTTCTGTTC
*
80557598 TCTTTTCTCTAT
1 TCTTTTCTTTAT
*
80557610 TCTTTT-TGT-T
1 TCTTTTCTTTAT
80557620 TCTTTTCTTTAT
1 TCTTTTCTTTAT
80557632 TCTGTTTCTTTTAT
1 TCT-TTTC-TTTAT
80557646 TC
1 TC
80557648 ACTTTAGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
10 7 0.22
11 4 0.12
12 10 0.31
13 4 0.12
14 7 0.22
ACGTcount: A:0.06, C:0.18, G:0.04, T:0.72
Consensus pattern (12 bp):
TCTTTTCTTTAT
Found at i:80567039 original size:18 final size:18
Alignment explanation
Indices: 80567018--80567062 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
80567008 GCTCCTCTTA
80567018 AGCCTGAGCATCCTCAGC
1 AGCCTGAGCATCCTCAGC
80567036 AGCCTGAGCATCCTCAGC
1 AGCCTGAGCATCCTCAGC
80567054 AGCCTGAGC
1 AGCCTGAGC
80567063 TTGATTTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (18 bp):
AGCCTGAGCATCCTCAGC
Found at i:80567045 original size:9 final size:9
Alignment explanation
Indices: 80567018--80567062 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
80567008 GCTCCTCTTA
80567018 AGCCTGAGC
1 AGCCTGAGC
* *
80567027 ATCCTCAGC
1 AGCCTGAGC
80567036 AGCCTGAGC
1 AGCCTGAGC
* *
80567045 ATCCTCAGC
1 AGCCTGAGC
80567054 AGCCTGAGC
1 AGCCTGAGC
80567063 TTGATTTTGT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (9 bp):
AGCCTGAGC
Found at i:80576128 original size:50 final size:50
Alignment explanation
Indices: 80576074--80576168 Score: 163
Period size: 50 Copynumber: 1.9 Consensus size: 50
80576064 TCTTAAATAT
80576074 AAAGTTAGTGAGTTACACAGCCTAGACACATGCCCGTGTGACTCAATTCC
1 AAAGTTAGTGAGTTACACAGCCTAGACACATGCCCGTGTGACTCAATTCC
* * *
80576124 AAAGTTAGTGAGTTACACAGCCTGGACACATGCCTGTGTGTCTCA
1 AAAGTTAGTGAGTTACACAGCCTAGACACATGCCCGTGTGACTCA
80576169 CTCGTGTGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25
Consensus pattern (50 bp):
AAAGTTAGTGAGTTACACAGCCTAGACACATGCCCGTGTGACTCAATTCC
Found at i:80576494 original size:30 final size:30
Alignment explanation
Indices: 80576459--80576516 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
80576449 AAGACAGATT
* *
80576459 CCACACGGG-TGGAGCACACGCCCGTGTGAG
1 CCACACGGGCTGG-CCACACGCCCATGTGAG
80576489 CCACACGGGCTGGCCACACGCCCATGTG
1 CCACACGGGCTGGCCACACGCCCATGTG
80576517 GCAGCCCGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.19, C:0.38, G:0.33, T:0.10
Consensus pattern (30 bp):
CCACACGGGCTGGCCACACGCCCATGTGAG
Found at i:80581440 original size:6 final size:6
Alignment explanation
Indices: 80581429--80581480 Score: 79
Period size: 6 Copynumber: 8.7 Consensus size: 6
80581419 TTGAGGCAAG
*
80581429 TTATTT TTATTT TTATTT TTATATT TTA-TT TTATTT TTATTT TTCTTT
1 TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT TTATTT TTATTT
80581477 TTAT
1 TTAT
80581481 ATCATTTTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
5 5 0.12
6 32 0.76
7 5 0.12
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:80581500 original size:30 final size:29
Alignment explanation
Indices: 80581429--80581502 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 29
80581419 TTGAGGCAAG
*
80581429 TTATTTTTATTTTTATTTTTATATTTTATT
1 TTATTTTTATTTTTATTTTTATA-TTCATT
*
80581459 TTATTTTTATTTTTCTTTTTATA-TCATT
1 TTATTTTTATTTTTATTTTTATATTCATT
* *
80581487 TTGTCTTTATATTTTA
1 TTATTTTTAT-TTTTA
80581503 AACTTTATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
28 12 0.32
29 4 0.11
30 22 0.58
ACGTcount: A:0.19, C:0.04, G:0.01, T:0.76
Consensus pattern (29 bp):
TTATTTTTATTTTTATTTTTATATTCATT
Found at i:80588652 original size:61 final size:61
Alignment explanation
Indices: 80588530--80588654 Score: 144
Period size: 61 Copynumber: 2.0 Consensus size: 61
80588520 ATATTTTTAA
* * * * * * * **
80588530 TTTTAGAGTTAGGACTAAATTGATAGATTTTATAAATATTGATGCCCAATTTATTGATTTT
1 TTTTAGAATTAGAACTAAAATGACAAATTTTACAAATATTGAGGCAAAATTTATTGATTTT
*
80588591 TTTTAGAATTAGAACTAAAATGACAAATTTTACAAATATTGAGGACAAAATTTGTTG-TTTT
1 TTTTAGAATTAGAACTAAAATGACAAATTTTACAAATATTGAGG-CAAAATTTATTGATTTT
80588652 TTT
1 TTT
80588655 ATATTTAAGA
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
61 44 0.83
62 9 0.17
ACGTcount: A:0.36, C:0.06, G:0.14, T:0.44
Consensus pattern (61 bp):
TTTTAGAATTAGAACTAAAATGACAAATTTTACAAATATTGAGGCAAAATTTATTGATTTT
Found at i:80591126 original size:24 final size:23
Alignment explanation
Indices: 80591076--80591136 Score: 59
Period size: 24 Copynumber: 2.5 Consensus size: 23
80591066 TTGAATTGCT
* *
80591076 GAAAAAGAAAAAGAAAAAGAATC
1 GAAAAAAAAAAAGAAAAAGAAAC
* *
80591099 GAAAAAAATAAAAGAAAAGGAAAG
1 GAAAAAAA-AAAAGAAAAAGAAAC
80591123 GAAACATAAAAAAA
1 GAAA-A-AAAAAAA
80591137 TGGAAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
23 7 0.23
24 16 0.52
25 5 0.16
26 3 0.10
ACGTcount: A:0.75, C:0.03, G:0.16, T:0.05
Consensus pattern (23 bp):
GAAAAAAAAAAAGAAAAAGAAAC
Found at i:80592423 original size:30 final size:30
Alignment explanation
Indices: 80592367--80592424 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
80592357 TAGGCACTTC
** *
80592367 CACACGGGTGATCCACACGTCTGTGTGTGA
1 CACACGGGTGATCCACACACCCGTGTGTGA
80592397 CACACGGGTAGA-CCACACACCCGTGTGT
1 CACACGGGT-GATCCACACACCCGTGTGT
80592425 CATGGCTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (30 bp):
CACACGGGTGATCCACACACCCGTGTGTGA
Found at i:80595818 original size:3 final size:3
Alignment explanation
Indices: 80595810--80595847 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
80595800 TTCCCCTGTC
80595810 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
80595848 AGTCAATACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:80601343 original size:28 final size:28
Alignment explanation
Indices: 80601300--80601353 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
80601290 GAATAAGTTT
*
80601300 ACTTGTTTAGTAGTAAGGCTTTAGCTAA
1 ACTTGCTTAGTAGTAAGGCTTTAGCTAA
*
80601328 ACTTGCTTAGTTGTAAGGCTTTAGCT
1 ACTTGCTTAGTAGTAAGGCTTTAGCT
80601354 TACCCTTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.13, G:0.22, T:0.41
Consensus pattern (28 bp):
ACTTGCTTAGTAGTAAGGCTTTAGCTAA
Found at i:80604534 original size:11 final size:11
Alignment explanation
Indices: 80604518--80604545 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
80604508 CTGTAAATAT
80604518 TATTTATAGAA
1 TATTTATAGAA
80604529 TATTTATAGAA
1 TATTTATAGAA
80604540 TATTTA
1 TATTTA
80604546 CAGAGTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (11 bp):
TATTTATAGAA
Found at i:80617462 original size:17 final size:16
Alignment explanation
Indices: 80617431--80617469 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
80617421 GTATGTGATA
*
80617431 AATTTATTGTAAATGT
1 AATTTATTATAAATGT
80617447 AATTTCATTATAAATGT
1 AATTT-ATTATAAATGT
*
80617464 ACTTTA
1 AATTTA
80617470 GATGCTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.38, C:0.05, G:0.08, T:0.49
Consensus pattern (16 bp):
AATTTATTATAAATGT
Found at i:80619391 original size:37 final size:37
Alignment explanation
Indices: 80619341--80619416 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
80619331 TTATTACGAA
* * *
80619341 GTCTTACCCGGACATAATCTCCACACGA-AGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACAC-ATAGTCATCGG
80619378 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
80619415 GT
1 GT
80619417 ATTTAGAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
36 1 0.03
37 34 0.97
ACGTcount: A:0.28, C:0.32, G:0.18, T:0.22
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACATAGTCATCGG
Found at i:80619616 original size:47 final size:47
Alignment explanation
Indices: 80619538--80619995 Score: 774
Period size: 47 Copynumber: 9.7 Consensus size: 47
80619528 CCCTTTGGGA
* * * * *
80619538 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80619585 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80619632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80619679 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80619726 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80619773 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80619820 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATCAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80619867 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80619914 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
80619961 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
80619996 AGAATCCTAA
Statistics
Matches: 392, Mismatches: 18, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
46 1 0.00
47 391 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80628522 original size:37 final size:37
Alignment explanation
Indices: 80628468--80628555 Score: 124
Period size: 37 Copynumber: 2.4 Consensus size: 37
80628458 TTAGTGCCGA
*
80628468 GGCATGTTATCGATTGGATTAGCTCTCATGAGCATTT
1 GGCATGTTATCGATTGGATTAGCTCTAATGAGCATTT
* * *
80628505 GGCATGTTATTGGTTGGATTAGCTCTAATGAGCGTTT
1 GGCATGTTATCGATTGGATTAGCTCTAATGAGCATTT
*
80628542 GGCGTGTT-TCGATT
1 GGCATGTTATCGATT
80628556 AGACTACTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
36 4 0.09
37 40 0.91
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.40
Consensus pattern (37 bp):
GGCATGTTATCGATTGGATTAGCTCTAATGAGCATTT
Found at i:80631322 original size:11 final size:10
Alignment explanation
Indices: 80631290--80631336 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
80631280 TAACATGTTG
80631290 AATTTTAATT
1 AATTTTAATT
80631300 AATTTTATATT
1 AATTTTA-ATT
80631311 AAATTTTAATT
1 -AATTTTAATT
*
80631322 AATTTTGATT
1 AATTTTAATT
80631332 -ATTTT
1 AATTTT
80631337 TGACAGATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 5 0.15
10 16 0.47
11 6 0.18
12 7 0.21
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (10 bp):
AATTTTAATT
Found at i:80633117 original size:58 final size:58
Alignment explanation
Indices: 80633033--80633150 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
80633023 AATAGGGTTA
* * *
80633033 CTAGGTTTTATCAGATTAGGATGAAACCTAATATGGGAGTCAATAGAGTGATTTACTG
1 CTAGATTTTACCAAATTAGGATGAAACCTAATATGGGAGTCAATAGAGTGATTTACTG
*
80633091 CTAGATTTTACCAAATTAGGGTGAAACCTAATATGGGAGTCAATAGAGTGATTTACTG
1 CTAGATTTTACCAAATTAGGATGAAACCTAATATGGGAGTCAATAGAGTGATTTACTG
80633149 CT
1 CT
80633151 TCCCTAGGGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.33, C:0.12, G:0.23, T:0.32
Consensus pattern (58 bp):
CTAGATTTTACCAAATTAGGATGAAACCTAATATGGGAGTCAATAGAGTGATTTACTG
Found at i:80633408 original size:13 final size:13
Alignment explanation
Indices: 80633392--80633424 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
80633382 TTTAATTAAA
*
80633392 TTAGCTAATTAGT
1 TTAGATAATTAGT
80633405 TTAGATAATTAGT
1 TTAGATAATTAGT
80633418 TTA-ATAA
1 TTAGATAA
80633425 ACAATCCCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.03, G:0.12, T:0.45
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:80637007 original size:16 final size:16
Alignment explanation
Indices: 80636987--80637021 Score: 56
Period size: 14 Copynumber: 2.3 Consensus size: 16
80636977 AAATGCTCGT
80636987 GAAAAAAAAAAG--AA
1 GAAAAAAAAAAGAAAA
80637001 GAAAAAAAAAAGAAAA
1 GAAAAAAAAAAGAAAA
80637017 GAAAA
1 GAAAA
80637022 GGAACAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.63
16 7 0.37
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (16 bp):
GAAAAAAAAAAGAAAA
Found at i:80639182 original size:6 final size:6
Alignment explanation
Indices: 80639171--80639244 Score: 75
Period size: 6 Copynumber: 12.3 Consensus size: 6
80639161 CAACCCAATC
*
80639171 TTTATT TTTATT TTTATT TTTATT TATT-TT TTT-CT TTTATT ATTTATT
1 TTTATT TTTATT TTTATT TTTATT T-TTATT TTTATT TTTATT -TTTATT
80639219 ATTT-TCT TTTATT TTTA-T TTTATT TT
1 -TTTAT-T TTTATT TTTATT TTTATT TT
80639245 AGTTAAATAT
Statistics
Matches: 60, Mismatches: 2, Indels: 12
0.81 0.03 0.16
Matches are distributed among these distances:
5 11 0.18
6 35 0.58
7 14 0.23
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:80639244 original size:16 final size:15
Alignment explanation
Indices: 80639175--80639245 Score: 81
Period size: 16 Copynumber: 4.4 Consensus size: 15
80639165 CCAATCTTTA
80639175 TTTTTATTTTTATTT
1 TTTTTATTTTTATTT
80639190 TTATTTATTTTT-TTCT
1 TT-TTTATTTTTATT-T
80639206 TTTATTATTTATTATTT
1 TTT-TTATTT-TTATTT
80639223 TCTTTTATTTTTATTT
1 T-TTTTATTTTTATTT
80639239 TATTTTA
1 T-TTTTA
80639246 GTTAAATATT
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
15 5 0.10
16 30 0.61
17 10 0.20
18 4 0.08
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTATTTTTATTT
Found at i:80640386 original size:118 final size:118
Alignment explanation
Indices: 80640165--80640395 Score: 354
Period size: 118 Copynumber: 2.0 Consensus size: 118
80640155 TGTTTTCCAT
* * *
80640165 GGTTATGAGTACAGCTTAGATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGATAGGGTGCTTGGGTTGTCATT
*
80640230 CTACTTCGCGTCAAAAGGTTGTATGACGTGACAAGTAAAACTCCGCTAGCCGA
66 CTACTTCGCGTCAAAAGGTTGTATGACATGACAAGTAAAACTCCGCTAGCCGA
** *
80640283 GGTTATGAGTATGGCTCAAATCGTGATTGACTGAGTAACCGGGATAGGGTGCTTGGGTTGTCATT
1 GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGATAGGGTGCTTGGGTTGTCATT
* ****
80640348 CTACTTCGCGTCAAAAGGTTGTGTGACATGTTGGGTAAAACTCCGCTA
66 CTACTTCGCGTCAAAAGGTTGTATGACATGACAAGTAAAACTCCGCTA
80640396 ACCGGAAATA
Statistics
Matches: 101, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
118 101 1.00
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.29
Consensus pattern (118 bp):
GGTTATGAGTACAGCTCAAATCGTGACTGACTGAGTAACCGGGATAGGGTGCTTGGGTTGTCATT
CTACTTCGCGTCAAAAGGTTGTATGACATGACAAGTAAAACTCCGCTAGCCGA
Found at i:80640538 original size:21 final size:21
Alignment explanation
Indices: 80640499--80640538 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80640489 TATTCCTAAG
* * *
80640499 TAAATAAATAATAATAAAATT
1 TAAAAAAATAAAAAAAAAATT
80640520 TAAAAAAATAAAAAAAAAA
1 TAAAAAAATAAAAAAAAAA
80640539 AGAAGAAGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
TAAAAAAATAAAAAAAAAATT
Found at i:80640552 original size:20 final size:20
Alignment explanation
Indices: 80640529--80640573 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
80640519 TTAAAAAAAT
*
80640529 AAAAAA-AAAAAGAAGAAGA
1 AAAAAAGAAAAAAAAGAAGA
80640548 AAAAAAGAAAAAAAAGAAGA
1 AAAAAAGAAAAAAAAGAAGA
80640568 AAAAAA
1 AAAAAA
80640574 TAAGTACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAAAGAAAAAAAAGAAGA
Found at i:80640558 original size:23 final size:23
Alignment explanation
Indices: 80640521--80640576 Score: 87
Period size: 23 Copynumber: 2.4 Consensus size: 23
80640511 AATAAAATTT
80640521 AAAAAAATAAAAAAAAAAAGAAG
1 AAAAAAATAAAAAAAAAAAGAAG
*
80640544 AAGAAAAA-AAGAAAAAAAAGAAG
1 AA-AAAAATAAAAAAAAAAAGAAG
80640567 AAAAAAATAA
1 AAAAAAATAA
80640577 GTACTAATAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 5 0.17
23 20 0.67
24 5 0.17
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.04
Consensus pattern (23 bp):
AAAAAAATAAAAAAAAAAAGAAG
Found at i:80651530 original size:13 final size:13
Alignment explanation
Indices: 80651501--80651539 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
80651491 ACAAAACAAA
80651501 AAGAAA-GAAAA-
1 AAGAAAGGAAAAG
80651512 AAGAAAGGAAAAG
1 AAGAAAGGAAAAG
80651525 AAGAAAGGAAAAG
1 AAGAAAGGAAAAG
80651538 AA
1 AA
80651540 AAAAACAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 6 0.23
12 5 0.19
13 15 0.58
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (13 bp):
AAGAAAGGAAAAG
Found at i:80651553 original size:18 final size:18
Alignment explanation
Indices: 80651510--80651553 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
80651500 AAAGAAAGAA
* * *
80651510 AAAAGAAAGGAAAAGAAG
1 AAAAGAAAAGAAAAAAAC
*
80651528 AAAGGAAAAGAAAAAAAC
1 AAAAGAAAAGAAAAAAAC
80651546 AAAAGAAA
1 AAAAGAAA
80651554 GGTGAAATAG
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.77, C:0.02, G:0.20, T:0.00
Consensus pattern (18 bp):
AAAAGAAAAGAAAAAAAC
Found at i:80656136 original size:17 final size:18
Alignment explanation
Indices: 80656116--80656149 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80656106 AGGGTTAGGC
80656116 GTTT-TGGGTTTTTTAAG
1 GTTTATGGGTTTTTTAAG
*
80656133 GTTTATGGTTTTTTTAA
1 GTTTATGGGTTTTTTAA
80656150 AGTGTTCAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.62
Consensus pattern (18 bp):
GTTTATGGGTTTTTTAAG
Found at i:80663628 original size:68 final size:68
Alignment explanation
Indices: 80663519--80663649 Score: 253
Period size: 68 Copynumber: 1.9 Consensus size: 68
80663509 CTCTTGACTA
*
80663519 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACCTAGGCAAAACCTTCAGTAGG
1 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTAGG
80663584 GAT
66 GAT
80663587 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTA
1 GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTA
80663650 TTGATACTGT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.27
Consensus pattern (68 bp):
GAAATAGTCCATCGTGTTCCTTCGATACATAAATCATCCAATACATAGGCAAAACCTTCAGTAGG
GAT
Found at i:80671450 original size:24 final size:24
Alignment explanation
Indices: 80671418--80671465 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
80671408 GAGGTAACTA
*
80671418 AAGGTGCCTCTAAAGATGATACCG
1 AAGGTGCCTCCAAAGATGATACCG
**
80671442 AAGGTGCCTCCGGAGATGATACCG
1 AAGGTGCCTCCAAAGATGATACCG
80671466 GAGGGGTATC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.23, G:0.29, T:0.19
Consensus pattern (24 bp):
AAGGTGCCTCCAAAGATGATACCG
Found at i:80671477 original size:24 final size:24
Alignment explanation
Indices: 80671431--80671477 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
80671421 GTGCCTCTAA
* *
80671431 AGATGATACCGAAGGTGCCTCCGG
1 AGATGATACCGAAGGGGCATCCGG
* *
80671455 AGATGATACCGGAGGGGTATCCG
1 AGATGATACCGAAGGGGCATCCG
80671478 AAGGTGTATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.36, T:0.17
Consensus pattern (24 bp):
AGATGATACCGAAGGGGCATCCGG
Found at i:80672134 original size:21 final size:21
Alignment explanation
Indices: 80672110--80672152 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
80672100 GAGTTTCATG
80672110 ATAGAT-TATCAATGTTTT-TTA
1 ATAGATATA-CAA-GTTTTGTTA
80672131 ATAGATATACAAGTTTTGTTA
1 ATAGATATACAAGTTTTGTTA
80672152 A
1 A
80672153 GTGATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.47
Consensus pattern (21 bp):
ATAGATATACAAGTTTTGTTA
Found at i:80672740 original size:40 final size:40
Alignment explanation
Indices: 80672620--80672767 Score: 170
Period size: 40 Copynumber: 3.7 Consensus size: 40
80672610 TGATTACAAA
* * * * *
80672620 TCAGCTATTTGTGGCACTTAGTGTGTGATTCGACATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
* * * *
80672660 ACGGTTATATATGGCACTTAGTGTGTGATTTGAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
80672700 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
1 TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
* * ** *
80672740 TCGGCTATGTACAGTACTTAGTGTGCGA
1 TCAGCTATATATGGCACTTAGTGTGCGA
80672768 GATATCGAGT
Statistics
Matches: 92, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (40 bp):
TCAGCTATATATGGCACTTAGTGTGCGATTTGAGATAGCT
Found at i:80676342 original size:23 final size:23
Alignment explanation
Indices: 80676302--80676351 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
80676292 CGATATAATT
* * * *
80676302 AAAATATATATTATTTTTAAATG
1 AAAATATAAATAAATTTTAAATA
*
80676325 AAAATATAAATAAATTTTGAATA
1 AAAATATAAATAAATTTTAAATA
80676348 AAAA
1 AAAA
80676352 GCCTCAGAGA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (23 bp):
AAAATATAAATAAATTTTAAATA
Found at i:80681547 original size:25 final size:24
Alignment explanation
Indices: 80681519--80681565 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
80681509 TTATAATATT
80681519 AATAATAACAAAATATAATAATACC
1 AATAATAACAAAATATAA-AATACC
*
80681544 AATAATAATAAAATATAAAATA
1 AATAATAACAAAATATAAAATA
80681566 AAATATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (24 bp):
AATAATAACAAAATATAAAATACC
Found at i:80685881 original size:13 final size:13
Alignment explanation
Indices: 80685863--80685895 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
80685853 CATTTGCTTG
80685863 TCCTCAAGCAAAA
1 TCCTCAAGCAAAA
80685876 TCCTCAAGCAAAA
1 TCCTCAAGCAAAA
80685889 TCCTCAA
1 TCCTCAA
80685896 CTCATAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.42, C:0.33, G:0.06, T:0.18
Consensus pattern (13 bp):
TCCTCAAGCAAAA
Found at i:80692032 original size:36 final size:36
Alignment explanation
Indices: 80691935--80692036 Score: 109
Period size: 36 Copynumber: 2.8 Consensus size: 36
80691925 CAGCTACAGT
* *
80691935 AGGTCTAATTATGCTCGATTTAGTTCCTGTTAAAGA
1 AGGTCTAACTATGCTCGATTCAGTTCCTGTTAAAGA
* * ** *
80691971 AGGTTTAGC-ATAATC-ATACATAGTTCCTGTTAAAGA
1 AGGTCTAACTATGCTCGATTC--AGTTCCTGTTAAAGA
80692007 AGGTCTAACTATGCTCGATTCAGTTCCTGT
1 AGGTCTAACTATGCTCGATTCAGTTCCTGT
80692037 AAAATCTTCG
Statistics
Matches: 50, Mismatches: 12, Indels: 8
0.71 0.17 0.11
Matches are distributed among these distances:
34 2 0.04
35 4 0.08
36 37 0.74
37 4 0.08
38 3 0.06
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (36 bp):
AGGTCTAACTATGCTCGATTCAGTTCCTGTTAAAGA
Found at i:80694902 original size:39 final size:39
Alignment explanation
Indices: 80694850--80694977 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
80694840 TATGAGATTG
80694850 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
80694889 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
80694928 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
80694967 AAAATATCCGG
1 AAAATATCCGG
80694978 GTTAAAAACC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:80694991 original size:78 final size:76
Alignment explanation
Indices: 80694849--80695003 Score: 195
Period size: 78 Copynumber: 2.0 Consensus size: 76
80694839 GTATGAGATT
* * * *
80694849 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAACCCGCA
*
80694914 GGCTATATGCTA
66 GGCT-TACGCTA
* * **
80694926 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAAACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAAACCCG
80694990 CAGGCTTACGCTA
64 CAGGCTTACGCTA
80695003 G
1 G
80695004 TAATGTATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 12 0.18
78 55 0.82
ACGTcount: A:0.31, C:0.22, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAAACCCGCA
GGCTTACGCTA
Found at i:80696667 original size:13 final size:13
Alignment explanation
Indices: 80696649--80696674 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80696639 TCACCTAAGT
80696649 ATAAAACATGAAA
1 ATAAAACATGAAA
80696662 ATAAAACATGAAA
1 ATAAAACATGAAA
80696675 TTAAGGCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.08, T:0.15
Consensus pattern (13 bp):
ATAAAACATGAAA
Found at i:80697862 original size:11 final size:11
Alignment explanation
Indices: 80697832--80697865 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
80697822 ATCTATTTCA
*
80697832 ACCATTTCAAT
1 ACCAATTCAAT
80697843 ACTCAATTCAAT
1 AC-CAATTCAAT
80697855 ACCAATTCAAT
1 ACCAATTCAAT
80697866 TAACTAAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.32
Consensus pattern (11 bp):
ACCAATTCAAT
Found at i:80699530 original size:51 final size:51
Alignment explanation
Indices: 80699466--80699601 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
80699456 TGGAAACATG
*
80699466 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
80699517 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
80699568 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
80699602 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:80701452 original size:96 final size:96
Alignment explanation
Indices: 80701286--80701575 Score: 463
Period size: 96 Copynumber: 3.0 Consensus size: 96
80701276 GTGTCCGAGG
* * * * *
80701286 AAGTCTGTTATCGATGGGAATGATCGAGCAGATACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
80701351 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
80701382 AAGTCTGTCATCGAAGGGAACGATGGAGCAAATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
80701447 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
* * * *
80701478 AAGTTTGTCATCAAAGGAAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
* *
80701543 TAAAGCCGAATCCAAGAGGGCTAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
80701574 AA
1 AA
80701576 AAAGAAGCGA
Statistics
Matches: 180, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 180 1.00
ACGTcount: A:0.36, C:0.18, G:0.33, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGATAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:80703253 original size:51 final size:51
Alignment explanation
Indices: 80703189--80703324 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 51
80703179 TGGAAACATG
*
80703189 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * *
80703240 ATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
80703291 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
80703325 TTGATGGTAG
Statistics
Matches: 68, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.40
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:80703627 original size:709 final size:707
Alignment explanation
Indices: 80702272--80703683 Score: 2689
Period size: 709 Copynumber: 2.0 Consensus size: 707
80702262 TAGGGGAGAA
80702272 TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATGCATCCGATGGAGGTCTATTAC
1 TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATGCATCCGATGGAGGTCTATTAC
80702337 TTAGATGGGGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
66 TTAGATGGGGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
80702402 AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
131 AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
80702467 AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
196 AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
80702532 AATCTTATAAGATATTATTTTATGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATATG
261 AATCTTATAAGATATTATTTTATGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATATG
80702597 ATATTATATTCTTAGAGATTTGATGGAAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTATC
326 ATATTATATTCTTAGAGATTTGATGGAAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTATC
80702662 TTGACCGTCAGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCACTC
391 TTGACCGTCAGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCACTC
80702727 CATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTGT
456 CATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTGT
*
80702792 GCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCGCTGTACGAGTTG
521 GCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCACTGTACGAGTTG
* *
80702857 GTGCCTTGGAGGAGTTCTTAAGGAATCCTCATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACG
586 GTGCCTTAGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACG
*
80702922 AGCGAATCGCCTAAGGCCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAG
651 AGCGAATCGCCTAAGACCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAG
*
80702979 TGTCACGGGCCAGAGTTCAAAGCCCGTGACCATCGAACCAAATGCATCCGATGGAGGTCTATTAC
1 TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATGCATCCGATGGAGGTCTATTAC
*
80703044 TTAGATGGGGATCATTTGGCCCATGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
66 TTAGATGGGGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
*
80703109 AGATTAAAGTTTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
131 AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
*
80703174 AAATATGGAAACATGATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
196 AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
80703239 AATCTTATAAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATA
261 AATCTTATAAGATATTATTTTAT--GATTACATATCTTAGATAAGATATGTAATCTTAGAAGATA
* *
80703304 TGATATTATATTCTTAGAGATTTGATGGTAGGTACCCTTTAATCTCGTCTGTCGATGTAATTGTA
324 TGATATTATATTCTTAGAGATTTGATGGAAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTA
*
80703369 TCTTGACCGTCGGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCAC
389 TCTTGACCGTCAGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCAC
80703434 TCCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGT
454 TCCATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGT
80703499 GTGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCACTGTACGAGT
519 GTGCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCACTGTACGAGT
*
80703564 TGGTGCCTTAGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGTGAGTTTGGA
584 TGGTGCCTTAGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGA
*
80703629 CGAGCGAATCGCCTAAGATCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGA
649 CGAGCGAATCGCCTAAGACCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGA
80703684 CACTAGTTGC
Statistics
Matches: 690, Mismatches: 13, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
707 279 0.40
709 411 0.60
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (707 bp):
TGTCACGGGCCAGAGTTCAAAGCCCATGACCATCGAACCAAATGCATCCGATGGAGGTCTATTAC
TTAGATGGGGATCATTTGGCCCACGTGAGCTGGCCCGATTCAAGGAACTGTTGGAGAAGCTTGTC
AGATTAAAGTCTGGTTGGCCCAATCGGACTGGCCCGTTGCTTGAAGAGATTGAAGGTCCATCTAC
AAATATGGAAACATGATATTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGG
AATCTTATAAGATATTATTTTATGATTACATATCTTAGATAAGATATGTAATCTTAGAAGATATG
ATATTATATTCTTAGAGATTTGATGGAAGGTACCCTTTAATCTCGTCCGTCGATGTAATTGTATC
TTGACCGTCAGTTTTGGGGGAGCTCAAGTATAAATAGAGAGCCTCCCCCTCATTTGTACTCACTC
CATTCATTGTTTCATTATTCTTTGTGAATAAGAGAATAGAGAGCATTTACTCAAACACTTTGTGT
GCGTCCCTTTCTGTTGTTCTTTATAAGCTTCTTTTGGCATAAGTTTGCTTCCACTGTACGAGTTG
GTGCCTTAGAGGAGTTCTTAAGGAATCCTAATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACG
AGCGAATCGCCTAAGACCGCACGGATTGCGAGACAAAAAGTCTAGCCCCGTGATAAG
Found at i:80704382 original size:27 final size:27
Alignment explanation
Indices: 80704351--80704406 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
80704341 TCTCTTAAGT
80704351 ATGTCAAATGAATTATGTATGAATTTC
1 ATGTCAAATGAATTATGTATGAATTTC
80704378 ATGTCAAATGAATTATGTATGAATTTC
1 ATGTCAAATGAATTATGTATGAATTTC
80704405 AT
1 AT
80704407 AAATTGAGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (27 bp):
ATGTCAAATGAATTATGTATGAATTTC
Found at i:80707655 original size:13 final size:13
Alignment explanation
Indices: 80707637--80707661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80707627 TGCTTCATTT
80707637 TTTTTATTTTTTA
1 TTTTTATTTTTTA
80707650 TTTTTATTTTTT
1 TTTTTATTTTTT
80707662 GGTTTTTTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:80711838 original size:18 final size:18
Alignment explanation
Indices: 80711812--80711847 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
80711802 TTTATAAATT
80711812 ATTTAATTAAATTAGAAA
1 ATTTAATTAAATTAGAAA
* *
80711830 ATTTGATTAGATTAGAAA
1 ATTTAATTAAATTAGAAA
80711848 TGGATAGTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (18 bp):
ATTTAATTAAATTAGAAA
Found at i:80712566 original size:15 final size:14
Alignment explanation
Indices: 80712527--80712567 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
80712517 AAAAAGACAA
*
80712527 AAAAAAATTCTTTG
1 AAAAAAATTTTTTG
80712541 AAAAAATATTTTTTG
1 AAAAAA-ATTTTTTG
80712556 ACAAAAAATTTT
1 A-AAAAAATTTT
80712568 AGCTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 6 0.25
15 13 0.54
16 5 0.21
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (14 bp):
AAAAAAATTTTTTG
Found at i:80728974 original size:11 final size:12
Alignment explanation
Indices: 80728950--80728981 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
80728940 TGTTTTTATA
80728950 TTATTTATTTAC
1 TTATTTATTTAC
80728962 TTATTTA-TTAC
1 TTATTTATTTAC
80728973 TTA-TTATTT
1 TTATTTATTT
80728982 TAGTTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 3 0.16
11 9 0.47
12 7 0.37
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATTTATTTAC
Found at i:80731139 original size:48 final size:46
Alignment explanation
Indices: 80731069--80731192 Score: 149
Period size: 48 Copynumber: 2.7 Consensus size: 46
80731059 TATAAGAGCT
* ** * * *
80731069 AGTGTAAGACATGTCTGGGACATGTGTCGGTCTTGAGATATATAAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGACA-A-AAGCC
* * *
80731117 AGTGTAAGACATGTCTATGACATGCATCAGTATTGAGACAAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGACAAAAGCC
80731163 AGTGTAAGACATGTCTAGGACATGCATCAG
1 AGTGTAAGACATGTCTAGGACATGCATCAG
80731193 CCTCGAGATA
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 32 0.48
47 1 0.02
48 33 0.50
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGACAAAAGCC
Found at i:80731191 original size:46 final size:46
Alignment explanation
Indices: 80731022--80731192 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 46
80731012 GTATGTGTAT
* *
80731022 TAGTGTAAGACATGTCTGGGACATGCATCGGCCATATT---ATAAGAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAG---TATTGAGATAAGAGC
* ** * * *
80731068 TAGTGTAAGACATGTCTGGGACATGTGTCGGTCTTGAGATATATAAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGATA-A-GAGC
* * *
80731116 CAGTGTAAGACATGTCTATGACATGCATCAGTATTGAGACAAGAGC
1 TAGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGATAAGAGC
80731162 TAGTGTAAGACATGTCTAGGACATGCATCAG
1 TAGTGTAAGACATGTCTAGGACATGCATCAG
80731193 CCTCGAGATA
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
43 3 0.03
46 64 0.61
47 2 0.02
48 36 0.34
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (46 bp):
TAGTGTAAGACATGTCTAGGACATGCATCAGTATTGAGATAAGAGC
Found at i:80731342 original size:49 final size:49
Alignment explanation
Indices: 80731254--80731371 Score: 139
Period size: 49 Copynumber: 2.4 Consensus size: 49
80731244 TGTTGTGTGT
* *
80731254 CAGTGTAAGACCTATTTGGGACATGGCATCGACACCGATAGATGAGAGC
1 CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAAAGC
* * * * *
80731303 CAGTGTAAAACCTGTTTGGGACATGGCATCAGTC-TCGATATATGAAAGT
1 CAGTGTAAGACCTGTTTGGGACATGGCATC-GACACCGATAGATGAAAGC
* *
80731352 CAGCGTAAGACCTGTCTGGG
1 CAGTGTAAGACCTGTTTGGG
80731372 TTATATTGGG
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 56 0.97
50 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTTTGGGACATGGCATCGACACCGATAGATGAAAGC
Found at i:80738718 original size:48 final size:48
Alignment explanation
Indices: 80738655--80738807 Score: 166
Period size: 48 Copynumber: 3.2 Consensus size: 48
80738645 ACATTATGAG
* * * *
80738655 AGCCAGTGTAGGACATGTTTGGGACATGCGTCAGCTTTGAGATATACA
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
* * ** *
80738703 AGCCAGTGTAAGACATGTTTAGGACATGCATTGGCATTGAGA-CGA-G
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
* * * *
80738749 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACA
1 AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
*
80738797 AGCTAGTGTAA
1 AGCCAGTGTAA
80738808 AACCTGTCTA
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
46 36 0.42
47 2 0.02
48 47 0.55
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (48 bp):
AGCCAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGATATACA
Found at i:80738764 original size:94 final size:94
Alignment explanation
Indices: 80738652--80738822 Score: 243
Period size: 94 Copynumber: 1.8 Consensus size: 94
80738642 GCCACATTAT
* * * * * *
80738652 GAGAGCCAGTGTAGGACATGTTTGGGACATGCGTCAGCTTTGAGATATACAAGCCAGTGTAAGAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
*
80738717 ATGTTTAGGACATGCATTGGCATTGAGAC
66 ATGTCTAGGACATGCATTGGCATTGAGAC
* * *
80738746 GAGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAAAC
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
*
80738811 CTGTCTAGGACA
66 ATGTCTAGGACA
80738823 CGGGTGTGGG
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 66 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.24
Consensus pattern (94 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATATACAAGCCAGTGTAAAAC
ATGTCTAGGACATGCATTGGCATTGAGAC
Found at i:80739948 original size:5 final size:5
Alignment explanation
Indices: 80739938--80739995 Score: 71
Period size: 6 Copynumber: 10.6 Consensus size: 5
80739928 ATTGAGTCCA
80739938 TTTAT TTTAT TTTATT TTTAT TTTAGT TTTAT TTTATT TTTAT GTTTAT
1 TTTAT TTTAT TTTA-T TTTAT TTTA-T TTTAT TTTA-T TTTAT -TTTAT
80739987 TTATAT TTT
1 TT-TAT TTT
80739996 CTTAGACTTC
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
5 23 0.48
6 25 0.52
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:80739958 original size:11 final size:11
Alignment explanation
Indices: 80739938--80739995 Score: 82
Period size: 11 Copynumber: 5.3 Consensus size: 11
80739928 ATTGAGTCCA
80739938 TTTA-TTTTAT
1 TTTATTTTTAT
80739948 TTTATTTTTAT
1 TTTATTTTTAT
*
80739959 TTTAGTTTTAT
1 TTTATTTTTAT
80739970 TTTATTTTTAT
1 TTTATTTTTAT
*
80739981 GTTTATTTATAT
1 -TTTATTTTTAT
80739993 TTT
1 TTT
80739996 CTTAGACTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
10 4 0.09
11 29 0.67
12 10 0.23
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:80765904 original size:25 final size:24
Alignment explanation
Indices: 80765795--80765943 Score: 246
Period size: 24 Copynumber: 6.2 Consensus size: 24
80765785 CCTAGCCTCC
80765795 TTTAATAACTGGGGCA-AAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
80765818 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
80765842 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
80765866 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
80765890 TTATCATAACTGGGGCATAAGCCCT
1 TT-TAATAACTGGGGCATAAGCCCT
* *
80765915 TTATCATAGCTGGGGCATAAGCCCT
1 TT-TAATAACTGGGGCATAAGCCCT
80765940 TTTA
1 TTTA
80765944 CACTTCCTCC
Statistics
Matches: 121, Mismatches: 3, Indels: 3
0.95 0.02 0.02
Matches are distributed among these distances:
23 16 0.13
24 58 0.48
25 47 0.39
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:80766008 original size:11 final size:11
Alignment explanation
Indices: 80765992--80766048 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
80765982 TTATGAATAC
80765992 ATCATATGCAT
1 ATCATATGCAT
80766003 ATCATA--CAT
1 ATCATATGCAT
*
80766012 ATCATGTGCAT
1 ATCATATGCAT
80766023 ATCATA--CAT
1 ATCATATGCAT
* *
80766032 GTCATGTGCAT
1 ATCATATGCAT
80766043 ATCATA
1 ATCATA
80766049 CATACCATGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
9 15 0.42
11 21 0.58
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:80766021 original size:20 final size:20
Alignment explanation
Indices: 80765992--80766058 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
80765982 TTATGAATAC
*
80765992 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
80766012 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
80766032 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
80766052 ACCATGT
1 ATCATGT
80766059 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80773942 original size:24 final size:24
Alignment explanation
Indices: 80773884--80774015 Score: 176
Period size: 25 Copynumber: 5.4 Consensus size: 24
80773874 TTGGAGGCCT
80773884 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
*
80773908 AACCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
80773932 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* * *
80773956 AGCCCTTTATCATAGCTGAGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
* *
80773981 AGCCCTTTATCATAGCTGGGGCATA
1 AGCCCTTT-TAATAACTGGGGCATA
80774006 AGCCCTTTTA
1 AGCCCTTTTA
80774016 CACTTCCTCC
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
23 18 0.18
24 36 0.36
25 45 0.45
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:80774086 original size:9 final size:9
Alignment explanation
Indices: 80774072--80774128 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
80774062 ACATCATGTG
80774072 CATATCATA
1 CATATCATA
*
80774081 CATATCATGTG
1 CATATCA--TA
80774092 CATATCATA
1 CATATCATA
* *
80774101 CATGTCATGTG
1 CATATCA--TA
80774112 CATATCATA
1 CATATCATA
80774121 CATATCAT
1 CATATCAT
80774129 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Done.