Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 251 of 295
Found at i:80774089 original size:20 final size:20
Alignment explanation
Indices: 80774064--80774130 Score: 125
Period size: 20 Copynumber: 3.4 Consensus size: 20
80774054 TTATGAATAC
80774064 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
80774084 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
80774104 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
80774124 ATCATGT
1 ATCATGT
80774131 TTATCAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:80774095 original size:11 final size:11
Alignment explanation
Indices: 80774064--80774119 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
80774054 TTATGAATAC
80774064 ATCATGTGCAT
1 ATCATGTGCAT
*
80774075 ATCA--TACAT
1 ATCATGTGCAT
80774084 ATCATGTGCAT
1 ATCATGTGCAT
*
80774095 ATCA--TACAT
1 ATCATGTGCAT
*
80774104 GTCATGTGCAT
1 ATCATGTGCAT
80774115 ATCAT
1 ATCAT
80774120 ACATATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:80776162 original size:66 final size:66
Alignment explanation
Indices: 80776056--80776188 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
80776046 TAGAATTTGC
80776056 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
80776121 G
66 G
* *
80776122 CTACAACAATAGTTTTCAAACAAGTTTGAAAATGGTGCCTTGTGAGGCCTTGTATGGCAGGAAAT
1 CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
80776187 G
66 G
80776188 C
1 C
80776189 CGAACTCCAT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (66 bp):
CTACAACAACAGTTTTCAAACAAGTTTGAAAATGGTGCCTTATGAGGCCTTGTATGGCAGGAAAT
G
Found at i:80781782 original size:20 final size:20
Alignment explanation
Indices: 80781757--80781797 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
80781747 AGCAAAAAGA
80781757 AAGAAAAATGGTCATTCATC
1 AAGAAAAATGGTCATTCATC
80781777 AAGAAAAATGGTCATTCATC
1 AAGAAAAATGGTCATTCATC
80781797 A
1 A
80781798 TCTTCTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
AAGAAAAATGGTCATTCATC
Found at i:80782498 original size:10 final size:10
Alignment explanation
Indices: 80782483--80782511 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
80782473 GAAATGTTTG
80782483 ATGATATAAT
1 ATGATATAAT
80782493 ATGATATAAT
1 ATGATATAAT
80782503 A-GATATAAT
1 ATGATATAAT
80782512 TGTTTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGATATAAT
Found at i:80782777 original size:37 final size:36
Alignment explanation
Indices: 80782731--80782855 Score: 117
Period size: 37 Copynumber: 3.4 Consensus size: 36
80782721 TGTTTTCAAT
* **
80782731 TGGACTAGCTCTTCGGAGTAATTGGAGTGTTATCGGG
1 TGGATTAGCTCTTATGAG-AATTGGAGTGTTATCGGG
* * * * *
80782768 TGGATTAGCTATTATGAGCATTTGGTGTTTTATCGAG
1 TGGATTAGCTCTTATGAG-AATTGGAGTGTTATCGGG
* *
80782805 TGGATTAGCTCTTATGAGCATCT-AACGTGTTATCGGG
1 TGGATTAGCTCTTATGAGAAT-TGGA-GTGTTATCGGG
80782842 TGGATTAGCTCTTA
1 TGGATTAGCTCTTA
80782856 CGAGCGATTG
Statistics
Matches: 70, Mismatches: 16, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
36 1 0.01
37 69 0.99
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.38
Consensus pattern (36 bp):
TGGATTAGCTCTTATGAGAATTGGAGTGTTATCGGG
Found at i:80782871 original size:37 final size:36
Alignment explanation
Indices: 80782757--80782881 Score: 137
Period size: 37 Copynumber: 3.4 Consensus size: 36
80782747 AGTAATTGGA
*
80782757 GTGTTATCGGGTGGATTAGCTATTATGAGCATTTGGT-
1 GTGTTATCGGGTGGATTAGCTCTTATGAGCA-TT-GTC
* * **
80782794 GTTTTATCGAGTGGATTAGCTCTTATGAGCATCTAAC
1 GTGTTATCGGGTGGATTAGCTCTTATGAGCAT-TGTC
*
80782831 GTGTTATCGGGTGGATTAGCTCTTACGAGCGATTGTC
1 GTGTTATCGGGTGGATTAGCTCTTATGAGC-ATTGTC
*
80782868 GTGTT-TCGGTTGGA
1 GTGTTATCGGGTGGA
80782882 ATATATATGT
Statistics
Matches: 74, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
36 9 0.12
37 63 0.85
38 2 0.03
ACGTcount: A:0.18, C:0.13, G:0.30, T:0.38
Consensus pattern (36 bp):
GTGTTATCGGGTGGATTAGCTCTTATGAGCATTGTC
Found at i:80783304 original size:18 final size:18
Alignment explanation
Indices: 80783281--80783321 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
80783271 GTAAAATTTT
80783281 AAGTATGATCTTAAATGA
1 AAGTATGATCTTAAATGA
80783299 AAGTATGATCTTAAATGA
1 AAGTATGATCTTAAATGA
80783317 AAGTA
1 AAGTA
80783322 GTTAACTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.46, C:0.05, G:0.17, T:0.32
Consensus pattern (18 bp):
AAGTATGATCTTAAATGA
Found at i:80783902 original size:33 final size:33
Alignment explanation
Indices: 80783864--80783930 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
80783854 TAGGCTATTG
80783864 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
1 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
80783897 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
1 TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
80783930 T
1 T
80783931 ACTTTTACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.18, C:0.30, G:0.09, T:0.43
Consensus pattern (33 bp):
TCCAAGCCTTATGTTGACCTTATTTTTCCTCCA
Found at i:80787797 original size:15 final size:15
Alignment explanation
Indices: 80787777--80787806 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80787767 CTCTATCAAG
*
80787777 GACAAGAATAATCCA
1 GACAAGAAAAATCCA
80787792 GACAAGAAAAATCCA
1 GACAAGAAAAATCCA
80787807 TATGAACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.20, G:0.13, T:0.10
Consensus pattern (15 bp):
GACAAGAAAAATCCA
Found at i:80788506 original size:15 final size:15
Alignment explanation
Indices: 80788486--80788514 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80788476 GAAGCCCAGA
80788486 ATAAGGAAATCCAAG
1 ATAAGGAAATCCAAG
80788501 ATAAGGAAATCCAA
1 ATAAGGAAATCCAA
80788515 TTTACAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (15 bp):
ATAAGGAAATCCAAG
Found at i:80794010 original size:13 final size:13
Alignment explanation
Indices: 80793988--80794047 Score: 52
Period size: 13 Copynumber: 4.6 Consensus size: 13
80793978 TTTGACAATG
*
80793988 CTTTTAAAAAGTA
1 CTTTTGAAAAGTA
80794001 CTTTTGAAAAGTA
1 CTTTTGAAAAGTA
* *
80794014 -TTGTGGAAAAGTG
1 CTT-TTGAAAAGTA
*
80794027 CTTTT-AAGAAGTG
1 CTTTTGAA-AAGTA
80794040 CTTTTGAA
1 CTTTTGAA
80794048 CAGTTTGGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 4 0.10
13 31 0.79
14 4 0.10
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (13 bp):
CTTTTGAAAAGTA
Found at i:80794689 original size:12 final size:12
Alignment explanation
Indices: 80794672--80794697 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
80794662 ATTGTTTGAT
80794672 TCACCATCATCA
1 TCACCATCATCA
80794684 TCACCATCATCA
1 TCACCATCATCA
80794696 TC
1 TC
80794698 GTCGTCATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.42, G:0.00, T:0.27
Consensus pattern (12 bp):
TCACCATCATCA
Found at i:80796194 original size:71 final size:72
Alignment explanation
Indices: 80796079--80796338 Score: 375
Period size: 72 Copynumber: 3.7 Consensus size: 72
80796069 CCTGTGAATC
* * * * **
80796079 AATTTTATATCC-AAAATCATATATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGT
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGT
80796141 AGAACATA
65 AGAACATA
*
80796149 AATTTAATATCCAAAAATCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
* *
80796214 AAATATA
66 GAACATA
* *
80796221 AATTCAATATCCAAAAACCAAACATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTA
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
80796286 GAACATA
66 GAACATA
*
80796293 AA-TTAATATCCAAAAACCAAACATAAATAACTATTGATAAAACTAG
1 AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAG
80796339 TTTAGCATTG
Statistics
Matches: 172, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
70 11 0.06
71 75 0.44
72 86 0.50
ACGTcount: A:0.55, C:0.14, G:0.05, T:0.26
Consensus pattern (72 bp):
AATTTAATATCCAAAAACCAAACATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTA
GAACATA
Found at i:80796786 original size:18 final size:18
Alignment explanation
Indices: 80796763--80796832 Score: 104
Period size: 18 Copynumber: 3.9 Consensus size: 18
80796753 CATTTCCTTC
* *
80796763 AATGTGAGCATCATTTGA
1 AATGTGAACATCATTTAA
80796781 AATGTGAACATCATTTAA
1 AATGTGAACATCATTTAA
*
80796799 AATCTGAACATCATTTAA
1 AATGTGAACATCATTTAA
*
80796817 AATGTAAACATCATTT
1 AATGTGAACATCATTT
80796833 CTCACATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.34
Consensus pattern (18 bp):
AATGTGAACATCATTTAA
Found at i:80798277 original size:11 final size:10
Alignment explanation
Indices: 80798261--80798300 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
80798251 AGGGAAGTCT
80798261 ATTTATTTTCC
1 ATTTA-TTTCC
*
80798272 ATTTATTCCC
1 ATTTATTTCC
80798282 ATTTATTTCC
1 ATTTATTTCC
80798292 AATTTATTT
1 -ATTTATTT
80798301 TAAATTTCAC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
10 13 0.50
11 13 0.50
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (10 bp):
ATTTATTTCC
Found at i:80802552 original size:31 final size:31
Alignment explanation
Indices: 80802514--80802575 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
80802504 AAACTTGGGA
80802514 GAATGAGGAAAAGTGACCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTGCCACTAC
*
80802545 GAATGAGGAAAAGTGGCCGAATTGCCACTAC
1 GAATGAGGAAAAGTGACCGAATTGCCACTAC
80802576 CAATTTCATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.16
Consensus pattern (31 bp):
GAATGAGGAAAAGTGACCGAATTGCCACTAC
Found at i:80806220 original size:40 final size:40
Alignment explanation
Indices: 80806038--80806260 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
80806028 TCCTCGTTCA
* * * * * *
80806038 AATGCCTTTGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
80806077 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
80806117 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
80806157 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
80806197 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
80806237 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80806261 CAGCATTCAA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 36 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:80806269 original size:41 final size:41
Alignment explanation
Indices: 80806192--80806269 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
80806182 TTAGTATCTC
* * *
80806192 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
80806233 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
80806270 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:80810868 original size:28 final size:27
Alignment explanation
Indices: 80810836--80810893 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 27
80810826 TGTCTATCGG
80810836 TTGTACTACAGTATCAATATACACTAAC
1 TTGTACTACAGTATCAATATA-ACTAAC
80810864 TTGTACTACAGTATCAATATAACTAAC
1 TTGTACTACAGTATCAATATAACTAAC
80810891 TTG
1 TTG
80810894 AGTGTTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 9 0.30
28 21 0.70
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
TTGTACTACAGTATCAATATAACTAAC
Found at i:80811973 original size:44 final size:45
Alignment explanation
Indices: 80811922--80812172 Score: 312
Period size: 45 Copynumber: 5.6 Consensus size: 45
80811912 ACACAATCTA
80811922 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCG
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCG
* * **
80811967 CA-GTATGAGTTCGCTATATCTATGAATCTTATTCTATGAATCTA
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCG
* * * **
80812011 CA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATGAATTGG
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCG
* *
80812055 CATGTATGAGTTCGCCATATCTATGAATATTCTTTTATGAA-CCTG
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCC-G
* * * *
80812100 CATGTATGAGTTCACTATATCTATGAATCTTCTACTAT-AAGTTCG
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAA-TCCG
*
80812145 CATGTATGAGTCCGCCATATCTATGAAT
1 CATGTATGAGTTCGCCATATCTATGAAT
80812173 TCAATTCTGC
Statistics
Matches: 174, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
44 78 0.45
45 95 0.55
46 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (45 bp):
CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCG
Found at i:80812137 original size:90 final size:90
Alignment explanation
Indices: 80811919--80812172 Score: 352
Period size: 90 Copynumber: 2.8 Consensus size: 90
80811909 ACGACACAAT
* * *
80811919 CTACATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCGCA-GTATGAGTTCGCTA
1 CTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATTCGCATGTATGAGTTCGCCA
* *
80811983 TATCTATGAATCTTATTCTATGAAT
66 TATCTATGAATATTATTCTATGAAC
* * *
80812008 CTACA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATGAATTGGCATGTATGAGTTCGCCA
1 CTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATTCGCATGTATGAGTTCGCCA
* *
80812072 TATCTATGAATATTCTTTTATGAAC
66 TATCTATGAATATTATTCTATGAAC
* * * *
80812097 CTGCATGTATGAGTTCACTATATCTATGAATCTTCTACTAT-AAGTTCGCATGTATGAGTCCGCC
1 CTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAA-TTCGCATGTATGAGTTCGCC
80812161 ATATCTATGAAT
65 ATATCTATGAAT
80812173 TCAATTCTGC
Statistics
Matches: 145, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
88 39 0.27
89 45 0.31
90 61 0.42
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (90 bp):
CTACATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATTCGCATGTATGAGTTCGCCA
TATCTATGAATATTATTCTATGAAC
Found at i:80812193 original size:90 final size:88
Alignment explanation
Indices: 80811922--80812203 Score: 304
Period size: 90 Copynumber: 3.2 Consensus size: 88
80811912 ACACAATCTA
* * *
80811922 CATGTATGAGTTCGCCATATCTATGAATCTTCTTCTATGAATCCGCA-GTATGAGTTCGCTATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATTCGCATGTATGAGTTCGCCATAT
* *
80811986 CTATGAA-TCTTATTCTATGAATCTA
66 CTATGAATTC-TATTCT-GGAATC-G
* * *
80812011 CA-ATATGAGTTTGCCATATCTATGAATCTTCTACTATGAATTGGCATGTATGAGTTCGCCATAT
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATTCGCATGTATGAGTTCGCCATAT
* * *
80812075 CTATGAATATTCTTTTAT-GAACCTG
66 CTATG-A-ATTCTATTCTGGAATC-G
* * *
80812100 CATGTATGAGTTCACTATATCTATGAATCTTCTACTAT-AAGTTCGCATGTATGAGTCCGCCATA
1 CATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAA-TTCGCATGTATGAGTTCGCCATA
* *
80812164 TCTATGAATTCAATTCTGCGAGTTCG
65 TCTATGAATTCTATTCTG-GA-ATCG
80812190 CATGTATGAGTTCG
1 CATGTATGAGTTCG
80812204 TATATAAGAA
Statistics
Matches: 162, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
88 46 0.28
89 33 0.20
90 75 0.46
91 6 0.04
92 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (88 bp):
CATGTATGAGTTCGCCATATCTATGAATCTTCTACTATGAATTCGCATGTATGAGTTCGCCATAT
CTATGAATTCTATTCTGGAATCG
Found at i:80822641 original size:3 final size:3
Alignment explanation
Indices: 80822633--80822676 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
80822623 CCAAAGAATA
80822633 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
80822677 ACAATTCTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:80826178 original size:13 final size:13
Alignment explanation
Indices: 80826160--80826184 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80826150 AAACTATAAA
80826160 AAAAATAAAAAAT
1 AAAAATAAAAAAT
80826173 AAAAATAAAAAA
1 AAAAATAAAAAA
80826185 ATCAAGAAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:80831505 original size:34 final size:34
Alignment explanation
Indices: 80831467--80831533 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
80831457 AAAAATTATT
80831467 TAAATTACGG-TTTA-GAGTTTTTAAATAAATTAAA
1 TAAATTACGGTTTTATGA--TTTTAAATAAATTAAA
*
80831501 TAAATTAGGGTTTTATGATTTTAAATAAATTAA
1 TAAATTACGGTTTTATGATTTTAAATAAATTAA
80831534 GTTAGGGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 24 0.80
35 4 0.13
36 2 0.07
ACGTcount: A:0.43, C:0.01, G:0.12, T:0.43
Consensus pattern (34 bp):
TAAATTACGGTTTTATGATTTTAAATAAATTAAA
Found at i:80831547 original size:22 final size:24
Alignment explanation
Indices: 80831496--80831567 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 24
80831486 TTTAAATAAA
* * *
80831496 TTAAATAAATTAGGGTTTTATGATT
1 TTAAATAAATTAGAG-TTTAGGGTT
80831521 TTAAATAAATTA-AG-TTAGGGTT
1 TTAAATAAATTAGAGTTTAGGGTT
80831543 TTAAATAAATTAGAGTTTAGGGTT
1 TTAAATAAATTAGAGTTTAGGGTT
80831567 T
1 T
80831568 ATAGTTTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
22 18 0.43
23 2 0.05
24 10 0.24
25 12 0.29
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (24 bp):
TTAAATAAATTAGAGTTTAGGGTT
Found at i:80831567 original size:88 final size:91
Alignment explanation
Indices: 80831475--80831645 Score: 258
Period size: 88 Copynumber: 1.9 Consensus size: 91
80831465 TTTAAATTAC
* *
80831475 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTTTATGATTTTAAATAAATTA-AG-TTA
1 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTAGGATTTTAAATAAATTAGAGTTTA
80831538 GGG-TTTTAAATAAATTAGAGTTTAG
66 GGGTTTTTAAATAAATTAGAGTTTAG
* * * * *
80831563 GGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTGAATAAATTAGGGTTTA
1 GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTAGGATTTTAAATAAATTAGAGTTTA
80831628 GGGTTTTTAAATAAATTA
66 GGGTTTTTAAATAAATTA
80831646 AGTAAATTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
88 52 0.71
89 1 0.01
90 6 0.08
91 14 0.19
ACGTcount: A:0.37, C:0.01, G:0.19, T:0.43
Consensus pattern (91 bp):
GGTTTAGAGTTTTTAAATAAATTAAATAAATTAGGGTTCTAGGATTTTAAATAAATTAGAGTTTA
GGGTTTTTAAATAAATTAGAGTTTAG
Found at i:80831616 original size:34 final size:33
Alignment explanation
Indices: 80831535--80831797 Score: 170
Period size: 34 Copynumber: 8.3 Consensus size: 33
80831525 ATAAATTAAG
80831535 TTAGGGTTTTAAATAAATTAGAGT---TTAGGGT
1 TTAGGGTTTTAAATAAATTA-AGTAAATTAGGGT
* *
80831566 TTATAGTTTTTAAATAAATTAAGTAAATTAGGGT
1 TTA-GGGTTTTAAATAAATTAAGTAAATTAGGGT
*
80831600 TCTAGGG--TT---T---TGAA-TAAATTAGGGT
1 T-TAGGGTTTTAAATAAATTAAGTAAATTAGGGT
80831625 TTAGGGTTTTTAAATAAATTAAGTAAATTAGGGT
1 TTAGGG-TTTTAAATAAATTAAGTAAATTAGGGT
* * *
80831659 TCTATGGTTTTAAAT-AAGT---TAAATTAAGGT
1 T-TAGGGTTTTAAATAAATTAAGTAAATTAGGGT
* *
80831689 TTATGGTTTTTAGATAAATTAAGTAAATTAGGGT
1 TTA-GGGTTTTAAATAAATTAAGTAAATTAGGGT
*
80831723 TCTAGGATTTTAAATAAATTAA-T---TTAGGGT
1 T-TAGGGTTTTAAATAAATTAAGTAAATTAGGGT
* *** *
80831753 GTAGGGTTTATGGTTAAATTTAATTAAATTAGGGT
1 TTAGGGTTT-TAAATAAA-TTAAGTAAATTAGGGT
*
80831788 TTAGGATTTT
1 TTAGGGTTTT
80831798 TTTAAAATAA
Statistics
Matches: 181, Mismatches: 23, Indels: 53
0.70 0.09 0.21
Matches are distributed among these distances:
24 5 0.03
25 12 0.07
26 3 0.02
27 2 0.01
29 10 0.06
30 32 0.18
31 13 0.07
32 18 0.10
33 7 0.04
34 57 0.31
35 22 0.12
ACGTcount: A:0.35, C:0.01, G:0.21, T:0.43
Consensus pattern (33 bp):
TTAGGGTTTTAAATAAATTAAGTAAATTAGGGT
Found at i:80831634 original size:24 final size:26
Alignment explanation
Indices: 80831584--80831645 Score: 92
Period size: 25 Copynumber: 2.5 Consensus size: 26
80831574 TTTAAATAAA
*
80831584 TTAAGTAAATTAGGGTTCTAGGG-TT
1 TTAAATAAATTAGGGTTCTAGGGTTT
*
80831609 TTGAATAAATTAGGGTT-TAGGGTTT
1 TTAAATAAATTAGGGTTCTAGGGTTT
80831634 TTAAATAAATTA
1 TTAAATAAATTA
80831646 AGTAAATTAG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 5 0.15
25 28 0.85
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.42
Consensus pattern (26 bp):
TTAAATAAATTAGGGTTCTAGGGTTT
Found at i:80831636 original size:59 final size:59
Alignment explanation
Indices: 80831559--80831743 Score: 262
Period size: 59 Copynumber: 3.1 Consensus size: 59
80831549 AAATTAGAGT
* *
80831559 TTAGGGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTGAATAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
* *
80831618 TTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTATGGTTTTAAATAAGTTAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTT--A-AA--TAAA
* * *
80831682 TTAAGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTAGGATTTTAAATAAA
1 TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
80831741 TTA
1 TTA
80831744 ATTTAGGGTG
Statistics
Matches: 112, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
59 56 0.50
61 2 0.02
62 3 0.03
64 51 0.46
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (59 bp):
TTAGGGTTTATGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTAGGGTTTTAAATAAA
Found at i:80831682 original size:30 final size:31
Alignment explanation
Indices: 80831580--80831752 Score: 116
Period size: 30 Copynumber: 5.6 Consensus size: 31
80831570 AGTTTTTAAA
*
80831580 TAAATTAAGTAAATTAGGGTTCTA-GG-GTT
1 TAAATTAAGTAAATTAGGGTTCTATGGTTTT
* *
80831609 T---TGAA-TAAATTAGGGTT-TAGGGTTTTT
1 TAAATTAAGTAAATTAGGGTTCTATGG-TTTT
80831636 AAATAAATTAAGTAAATTAGGGTTCTATGG-TTT
1 ---TAAATTAAGTAAATTAGGGTTCTATGGTTTT
*
80831669 TAAA-TAAGTTAAATTAAGGTT-TATGGTTTTT
1 TAAATTAAG-TAAATTAGGGTTCTATGG-TTTT
*
80831700 AGATAAATTAAGTAAATTAGGGTTCTA-GGATTT
1 ---TAAATTAAGTAAATTAGGGTTCTATGGTTTT
* * *
80831733 TAAATAAATTAATTTAGGGT
1 TAAATTAAGTAAATTAGGGT
80831753 GTAGGGTTTA
Statistics
Matches: 115, Mismatches: 10, Indels: 37
0.71 0.06 0.23
Matches are distributed among these distances:
24 2 0.02
25 14 0.12
26 3 0.03
27 2 0.02
29 10 0.09
30 33 0.29
31 3 0.03
33 9 0.08
34 29 0.25
35 10 0.09
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (31 bp):
TAAATTAAGTAAATTAGGGTTCTATGGTTTT
Found at i:80831715 original size:64 final size:63
Alignment explanation
Indices: 80831539--80831797 Score: 285
Period size: 64 Copynumber: 4.1 Consensus size: 63
80831529 ATTAAGTTAG
* **
80831539 GGTTTTAAATAAATTAGAGTTTAGGGTTTATAGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTA-A-ATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* *
80831604 GGGTTT---TGAA-TAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
1 GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* * * *
80831663 TGGTTTTAAATAAGTTAAATTAAGGTTTATGGTTTTTAGATAAATTAAGTAAATTAGGGTTCTA
1 -GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
* * * *** *
80831727 GGATTTTAAATAAATTAATTTAGGGTGTAGGGTTTATGGTTAAATTTAATTAAATTAGGGTT-TA
1 GG-TTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAA-TTAAGTAAATTAGGGTTCTA
80831791 GGATTTT
1 GG-TTTT
80831798 TTTAAAATAA
Statistics
Matches: 167, Mismatches: 20, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
59 43 0.26
60 6 0.04
61 2 0.01
62 3 0.02
63 4 0.02
64 88 0.53
65 21 0.13
ACGTcount: A:0.35, C:0.01, G:0.21, T:0.43
Consensus pattern (63 bp):
GGTTTTAAATAAATTAAATTAGGGTTTAGGGTTTTTAAATAAATTAAGTAAATTAGGGTTCTA
Found at i:80832136 original size:127 final size:126
Alignment explanation
Indices: 80831853--80832309 Score: 655
Period size: 126 Copynumber: 3.6 Consensus size: 126
80831843 TTGTACCCTT
* * * *
80831853 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTGAAAAACGCTTCAAGTAGGATTCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * * *
80831918 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGGACGCTCTTATTCTACAATAGTTCCTG
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
80831979 AAAAAATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
*
80832044 TGTCAGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
66 TGTCAGCAAAATTATAG-AAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* * *
80832106 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
* * * * *
80832171 TGTTAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATTTTCAACGGTAGTTCCT-
66 TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
* *
80832231 AAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAATGCTTCAAGCAGGATGCA
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCA
* *
80832296 ATGTCAGTAAAATT
65 CTGTCAGCAAAATT
80832310 TCTGAAAAAA
Statistics
Matches: 298, Mismatches: 31, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
125 39 0.13
126 144 0.48
127 115 0.39
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAC
TGTCAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCCTG
Found at i:80832319 original size:253 final size:253
Alignment explanation
Indices: 80831853--80832309 Score: 695
Period size: 253 Copynumber: 1.8 Consensus size: 253
80831843 TTGTACCCTT
* * * * * *
80831853 AAAAAATAATTTTGAGAAGACGTTTTTGAACAAATAGTGTGAAAAACGCTTCAAGTAGGATTCAC
1 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
* *
80831918 TGTCTGCAAAAATACAGAAAAAAGCTCTCACGTGGACGCTCTTATTCTACAATAGTTCCTGAAAA
66 TGTCTGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTATTCAACAATAGTTCCTGAAAA
* * *
80831983 AATAATTTTGAGAAGATGTTTTTGAACAAATAGTGTCCAAAACGCTTCAAGCAGGATGCACTGTC
131 AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTC
80832048 AGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
196 AGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
*
80832106 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAT
1 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
* * * **
80832171 TGT-TAGCAAAATTATAGAAAAAAGCTCCCACGTGGACGTTCATT-TTCAACGGTAGTTCCT-AA
66 TGTCT-GCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTC-TTATTCAACAATAGTTCCTGAA
*
80832233 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAAATGCTTCAAGCAGGATGCAAT
129 AAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTC-AAAAACGCTTCAAGCAGGATGCAAT
*
80832298 GTCAGTAAAATT
193 GTCAGCAAAATT
80832310 TCTGAAAAAA
Statistics
Matches: 182, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
252 41 0.23
253 139 0.76
254 2 0.01
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (253 bp):
AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACCCTTCAAGCAGGATGCAC
TGTCTGCAAAAATACAGAAAAAAGCTCCCACGTGGACGCTCTTATTCAACAATAGTTCCTGAAAA
AATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGCAATGTC
AGCAAAATTATAGAAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTTCTTG
Found at i:80832324 original size:18 final size:18
Alignment explanation
Indices: 80832301--80832338 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
80832291 ATGCAATGTC
80832301 AGTAAAATTTCTGAAAAA
1 AGTAAAATTTCTGAAAAA
80832319 AGTAAAATTTCTGAAAAA
1 AGTAAAATTTCTGAAAAA
80832337 AG
1 AG
80832339 CTCCTACGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.13, T:0.26
Consensus pattern (18 bp):
AGTAAAATTTCTGAAAAA
Found at i:80837468 original size:19 final size:18
Alignment explanation
Indices: 80837446--80837513 Score: 57
Period size: 19 Copynumber: 3.6 Consensus size: 18
80837436 CATAAATGAA
80837446 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
***
80837465 AAAATTTAAAATAA-ACGAAA
1 AAAATTT-AAATAATA--TTC
80837485 AAAATATTAAATAATATTC
1 AAAAT-TTAAATAATATTC
80837504 AAAATTTAAA
1 AAAATTTAAA
80837514 ACAAACCGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
18 8 0.21
19 16 0.42
20 11 0.29
21 3 0.08
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (18 bp):
AAAATTTAAATAATATTC
Found at i:80837494 original size:39 final size:39
Alignment explanation
Indices: 80837444--80837519 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
80837434 TACATAAATG
*
80837444 AAAAAATATTAAATAATATTCAAAATTTAAAATAAACGA
1 AAAAAATATTAAATAATATTCAAAATTTAAAACAAACGA
80837483 AAAAAATATTAAATAATATTCAAAATTTAAAACAAAC
1 AAAAAATATTAAATAATATTCAAAATTTAAAACAAAC
80837520 CGTTACTATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.64, C:0.07, G:0.01, T:0.28
Consensus pattern (39 bp):
AAAAAATATTAAATAATATTCAAAATTTAAAACAAACGA
Found at i:80839463 original size:54 final size:54
Alignment explanation
Indices: 80839375--80839742 Score: 335
Period size: 54 Copynumber: 6.8 Consensus size: 54
80839365 AAAAATCTTA
* * * *
80839375 CAATCTTAAATTGGCAAGCCGCAATATTCAAAAAATCTTGTAAGTATAAGGCTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * * * *
80839429 CAATCTTAAATCAACGAGTCGCAAGATTCGAAAAATCCTGTAAGTATAAGGTTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * ** * * *
80839483 TAATCTTAAATCGACAAACTACAAGATTTGGAAGATCTTGTAAGTATAAGGCTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * * * * * * * * *
80839537 CGATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGTAAATATAAGGTTA
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
** * *** * *
80839591 TGATCTTAAAGC-AGCAAATTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTG
1 CAATCTTAAATCGA-CAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * *
80839645 CGATCTTAAATCGACAAGCCACAAGATTTGAAAAATCTTGTAAGTATAAGGCTG
1 CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
* * * *
80839699 CAATCTTAAAAT-GACAAACTGCAATATTCAAAAAATCTTGTAAG
1 CAATCTT-AAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAG
80839743 CAGTGAATTG
Statistics
Matches: 243, Mismatches: 68, Indels: 6
0.77 0.21 0.02
Matches are distributed among these distances:
53 1 0.00
54 237 0.98
55 5 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (54 bp):
CAATCTTAAATCGACAAGCCGCAAGATTCGAAAAATCTTGTAAGTATAAGGCTG
Found at i:80839570 original size:108 final size:108
Alignment explanation
Indices: 80839400--80839742 Score: 420
Period size: 108 Copynumber: 3.2 Consensus size: 108
80839390 AAGCCGCAAT
* * * *
80839400 ATTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAATCAACGAGTCGCAAGATTCGAAAAAT
1 ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
*
80839465 CCTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTACAAG
66 CTTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTACAAG
*** * * * * *
80839508 ATTTGGAAGATCTTGTAAGTATAAGGCTGCGATATTAAATTGACGAGCCGTAATATTTGAAAAAT
1 ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
* * * * * *
80839573 CTTGTAAATATAAGGTTATGATCTTAAAGC-AGCAAATTGCAAG
66 CTTGTAAGTATAAGGTTGTAATCTTAAATCGA-CAAACTACAAG
* * *
80839616 ATTCAAAAAATCTTATAAGTATAAGGCTGCGATCTTAAATCGACAAGCCACAAGATTTGAAAAAT
1 ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
* * * *
80839681 CTTGTAAGTATAAGGCTGCAATCTTAAAAT-GACAAACTGCAAT
66 CTTGTAAGTATAAGGTTGTAATCTT-AAATCGACAAACTACAAG
80839724 ATTCAAAAAATCTTGTAAG
1 ATTCAAAAAATCTTGTAAG
80839743 CAGTGAATTG
Statistics
Matches: 193, Mismatches: 39, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
107 1 0.01
108 188 0.97
109 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (108 bp):
ATTCAAAAAATCTTGTAAGTATAAGGCTGCGATCTTAAATCGACGAGCCGCAAGATTTGAAAAAT
CTTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTACAAG
Found at i:80839653 original size:162 final size:162
Alignment explanation
Indices: 80839375--80839741 Score: 455
Period size: 162 Copynumber: 2.3 Consensus size: 162
80839365 AAAAATCTTA
* * * * *
80839375 CAATCTTAAATTGGCAAGCCGCAATATTCAAAAAATCTTGTAAGTATAAGGCTGCAATCTTAAAT
1 CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAAATATAAGGCTACAATCTTAAAG
* * * * * * *
80839440 CAACGAGTCGCAAGATTCGAAAAATCCTGTAAGTATAAGGTTGTAATCTTAAATCGACAAACTAC
66 CAACAAATCGCAAGATTCAAAAAATCCTATAAGTATAAGGCTGCAATCTTAAATCGACAAACCAC
* *
80839505 AAGATTTGGAAGATCTTGTAAGTATAAGGCTG
131 AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
* * * ** * **
80839537 CGATATTAAATTGACGAGCCGTAATATTTGAAAAATCTTGTAAATATAAGGTTATGATCTTAAAG
1 CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAAATATAAGGCTACAATCTTAAAG
* * * * *
80839602 CAGCAAATTGCAAGATTCAAAAAATCTTATAAGTATAAGGCTGCGATCTTAAATCGACAAGCCAC
66 CAACAAATCGCAAGATTCAAAAAATCCTATAAGTATAAGGCTGCAATCTTAAATCGACAAACCAC
80839667 AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
131 AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
* * * *
80839699 CAATCTTAAAATGACAAACTGCAATATTCAAAAAATCTTGTAA
1 CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAA
80839742 GCAGTGAATT
Statistics
Matches: 169, Mismatches: 36, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
162 169 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.28
Consensus pattern (162 bp):
CAATATTAAATTGACAAGCCGCAATATTCAAAAAATCTTGTAAATATAAGGCTACAATCTTAAAG
CAACAAATCGCAAGATTCAAAAAATCCTATAAGTATAAGGCTGCAATCTTAAATCGACAAACCAC
AAGATTTGAAAAATCTTGTAAGTATAAGGCTG
Found at i:80845091 original size:20 final size:21
Alignment explanation
Indices: 80845066--80845105 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
80845056 TTTTAATAAT
*
80845066 TTAATAT-ATAAATATTTTAA
1 TTAATATAAAAAATATTTTAA
80845086 TTAATATAAAAAATATTTTA
1 TTAATATAAAAAATATTTTA
80845106 TATATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TTAATATAAAAAATATTTTAA
Found at i:80845821 original size:21 final size:21
Alignment explanation
Indices: 80845795--80845843 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
80845785 AATTCTAGAC
80845795 CCCTAAACTTAAAACATTAAA
1 CCCTAAACTTAAAACATTAAA
* * *
80845816 CCCTAAACTTTAAATATTGAA
1 CCCTAAACTTAAAACATTAAA
*
80845837 TCCTAAA
1 CCCTAAA
80845844 TTTTATCCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.47, C:0.22, G:0.02, T:0.29
Consensus pattern (21 bp):
CCCTAAACTTAAAACATTAAA
Found at i:80847293 original size:40 final size:40
Alignment explanation
Indices: 80847249--80847433 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
80847239 GCTCCTCGTT
* *
80847249 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
80847289 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
80847329 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
80847368 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
80847409 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80847434 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 4 0.03
39 29 0.23
40 77 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:80847349 original size:79 final size:82
Alignment explanation
Indices: 80847249--80847433 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
80847239 GCTCCTCGTT
* **
80847249 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
80847312 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
80847329 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
80847392 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
80847409 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80847434 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
78 5 0.06
79 53 0.59
80 30 0.33
81 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:80855200 original size:36 final size:36
Alignment explanation
Indices: 80855152--80855253 Score: 136
Period size: 36 Copynumber: 2.8 Consensus size: 36
80855142 AGCTCGGTTA
80855152 TAGTACTCGCAC-AATGCCTTCGGACTTAACCCGGAT
1 TAGTACTCGCACAAATGCCTTCGGACTTAACCC-GAT
* * *
80855188 TTGTACTCGCACAAATG-CTTCGGGCTTAGCCCGAT
1 TAGTACTCGCACAAATGCCTTCGGACTTAACCCGAT
80855223 TAGTATCTCGCACAAATGCCTTCGGATCTTA
1 TAGTA-CTCGCACAAATGCCTTCGGA-CTTA
80855254 GTCGGATATG
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
35 7 0.12
36 36 0.63
37 10 0.18
38 4 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (36 bp):
TAGTACTCGCACAAATGCCTTCGGACTTAACCCGAT
Found at i:80856952 original size:40 final size:39
Alignment explanation
Indices: 80856854--80857074 Score: 205
Period size: 39 Copynumber: 5.6 Consensus size: 39
80856844 TCCTCGTTCA
* * * * *
80856854 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
80856893 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
80856932 GAATGCCTTCGGGACTTAACCCGGATTTAAT-ACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * *
80856971 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCAC
* ** * * * *
80857011 AAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
80857051 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
80857075 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
38 5 0.03
39 83 0.54
40 64 0.41
41 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:80856955 original size:79 final size:78
Alignment explanation
Indices: 80856854--80857021 Score: 196
Period size: 79 Copynumber: 2.1 Consensus size: 78
80856844 TCCTCGTTCA
* * * *
80856854 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG-A
1 AATGCCTTCGGGACATAACCCGGATTTAAT-ACTCACACAAAGGCCTTCGGGACATAACCCGGAA
80856917 TTTAATAACTCGCAC
65 TTT-ATAACTCGCAC
* * * *
80856932 GAATGCCTTCGGGACTTAACCCGGATTTAATACTCGCACAAAGGCCTTCGGGGCTTAACCCGGAA
1 -AATGCCTTCGGGACATAACCCGGATTTAATACTCACACAAAGGCCTTCGGGACATAACCCGGAA
* *
80856997 TTTGTATCTCGCAC
65 TTTATAACTCGCAC
*
80857011 AAAGCCTTCGG
1 AATGCCTTCGG
80857022 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 17 0.22
79 55 0.72
80 4 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGACATAACCCGGATTTAATACTCACACAAAGGCCTTCGGGACATAACCCGGAAT
TTATAACTCGCAC
Found at i:80857058 original size:79 final size:79
Alignment explanation
Indices: 80856890--80857074 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
80856880 TAGTAACTCA
* * *
80856890 CACAATGCCTTCGGGACATAACCCGG-ATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCC
1 CACAAAGCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACGAAAGCCTTCGGGACTTAACCC
* *
80856954 GGATTTAATACTCG
66 GGATATAATACTAG
* * * **
80856968 CACAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC-AAAGCCTTC-GGATCTTAGT
1 CACAAA-GCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACGAAAGCCTTCGGGA-CTTAAC
*
80857030 CCGGATATATTCACTTAG
64 CCGGATATAAT-AC-TAG
*
80857048 CACAAAGCCTTCGGGACTTAGCCCGGA
1 CACAAAGCCTTCGGGACTTAACCCGGA
80857075 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
77 3 0.03
78 26 0.29
79 48 0.54
80 12 0.13
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CACAAAGCCTTCGGGACTTAACCCGGAATTTAATAACTCGCACGAAAGCCTTCGGGACTTAACCC
GGATATAATACTAG
Found at i:80871332 original size:29 final size:30
Alignment explanation
Indices: 80871299--80871357 Score: 111
Period size: 29 Copynumber: 2.0 Consensus size: 30
80871289 CTAGAGACTA
80871299 TCGTAAAAGATCGACGGGT-AAGCTCCATT
1 TCGTAAAAGATCGACGGGTAAAGCTCCATT
80871328 TCGTAAAAGATCGACGGGTAAAGCTCCATT
1 TCGTAAAAGATCGACGGGTAAAGCTCCATT
80871358 CTCAGCTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 19 0.66
30 10 0.34
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (30 bp):
TCGTAAAAGATCGACGGGTAAAGCTCCATT
Found at i:80876083 original size:27 final size:27
Alignment explanation
Indices: 80876021--80876085 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
80876011 AGCACTAAGT
* *
80876021 TTGATTATATAGCACTAAGTGTGCGAG
1 TTGAATATATAGCACTAAGTGTGCGAC
* * *
80876048 TTGATTATATAGCACTGAGTGTGAGGAC
1 TTGAATATATAGCACTAAGTGTG-CGAC
80876076 TT-AATATATA
1 TTGAATATATA
80876086 TTTTTGAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 29 0.88
28 4 0.12
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.35
Consensus pattern (27 bp):
TTGAATATATAGCACTAAGTGTGCGAC
Found at i:80879868 original size:30 final size:30
Alignment explanation
Indices: 80879834--80879894 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80879824 TCCTTAACTC
80879834 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80879864 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80879894 A
1 A
80879895 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80881728 original size:13 final size:13
Alignment explanation
Indices: 80881710--80881750 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
80881700 TAGATTTTTC
80881710 CTAAATATTATCA
1 CTAAATATTATCA
80881723 CTAAATA--ATCA
1 CTAAATATTATCA
80881734 -TAAATATTATCA
1 CTAAATATTATCA
80881746 CTAAA
1 CTAAA
80881751 ATGTAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.24
11 4 0.16
12 4 0.16
13 11 0.44
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:80882249 original size:41 final size:40
Alignment explanation
Indices: 80882215--80882400 Score: 178
Period size: 41 Copynumber: 4.5 Consensus size: 40
80882205 AAGTCTAAAC
* *
80882215 AAGGGCACGTATGTGCAATTCAAAGGTATCGAAGTATAAA
1 AAGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAA
* * * *
80882255 TAGGGGCATGCATGTGCTATT-AATGGGTATCGAAGTACAAA
1 -AAGGGCACGTATGTGCAATTCAA-GGGTATCGAAGTACAAA
* * *
80882296 CAGGGACACATATGTGCAATTCAGGGGTA-CTGAAGTACAAA
1 AAGGG-CACGTATGTGCAATTCAAGGGTATC-GAAGTACAAA
* * * * *
80882337 TAGAGGCACGTATGTGCAATTTAGGGGTACCAAAGTACAAA
1 AAG-GGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAA
80882378 AAGGGGCACGTATGTGCAATTCA
1 AA-GGGCACGTATGTGCAATTCA
80882401 GCAATATTTT
Statistics
Matches: 119, Mismatches: 19, Indels: 14
0.78 0.12 0.09
Matches are distributed among these distances:
40 6 0.05
41 108 0.91
42 5 0.04
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (40 bp):
AAGGGCACGTATGTGCAATTCAAGGGTATCGAAGTACAAA
Found at i:80882352 original size:82 final size:81
Alignment explanation
Indices: 80882211--80882401 Score: 222
Period size: 82 Copynumber: 2.3 Consensus size: 81
80882201 ACTGAAGTCT
* * * * *
80882211 AAACAAGGGCACGTATGTGCAATTCAAAGGTATCGAAGTATAAATAGGGGCATGCATGTGCTATT
1 AAAC-AGGGCACGTATGTGCAATTCAGAGGTATCGAAGTACAAATAGAGGCACGCATGTGCAATT
* * *
80882276 AATGGGTATCGAAGTAC
65 AAGGGGTACCAAAGTAC
* * *
80882293 AAACAGGGACACATATGTGCAATTCAGGGGTA-CTGAAGTACAAATAGAGGCACGTATGTGCAAT
1 AAACAGGG-CACGTATGTGCAATTCAGAGGTATC-GAAGTACAAATAGAGGCACGCATGTGCAAT
*
80882357 TTAGGGGTACCAAAGTAC
64 TAAGGGGTACCAAAGTAC
*
80882375 AAAAAGGGGCACGTATGTGCAATTCAG
1 AAACA-GGGCACGTATGTGCAATTCAG
80882402 CAATATTTTT
Statistics
Matches: 92, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
81 5 0.05
82 84 0.91
83 3 0.03
ACGTcount: A:0.36, C:0.15, G:0.27, T:0.22
Consensus pattern (81 bp):
AAACAGGGCACGTATGTGCAATTCAGAGGTATCGAAGTACAAATAGAGGCACGCATGTGCAATTA
AGGGGTACCAAAGTAC
Found at i:80891100 original size:25 final size:25
Alignment explanation
Indices: 80891066--80891115 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
80891056 TAGATACGTG
80891066 GAACACATCATGAATCTTCTCTAAT
1 GAACACATCATGAATCTTCTCTAAT
80891091 GAACACATCATGAATCTTCTCTAAT
1 GAACACATCATGAATCTTCTCTAAT
80891116 TCAGGTGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (25 bp):
GAACACATCATGAATCTTCTCTAAT
Found at i:80900744 original size:26 final size:27
Alignment explanation
Indices: 80900699--80900751 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
80900689 TTAAATTCTG
* *
80900699 GCATGCATTCGGACACTTAAAAATTCA
1 GCATACATTCGAACACTTAAAAATTCA
*
80900726 GCATACATTCGAACA-TTAAAATTTCA
1 GCATACATTCGAACACTTAAAAATTCA
80900752 CTAGCTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (27 bp):
GCATACATTCGAACACTTAAAAATTCA
Found at i:80903916 original size:48 final size:48
Alignment explanation
Indices: 80903863--80904111 Score: 259
Period size: 48 Copynumber: 5.2 Consensus size: 48
80903853 TATCCCGGAT
* * * * * *
80903863 ATGGTCTTATACAAAG-TCTCATGTCAGTGCCGATGCCATGTCCCAAAC
1 ATGGTCTTATAC-TAGCTCACATATCAATGCCAATGCCATGTCCCAGAC
* *
80903911 ATGGTCTTATACTAGCACACATATCAATGCCAATGCCATGTCCCAGGC
1 ATGGTCTTATACTAGCTCACATATCAATGCCAATGCCATGTCCCAGAC
* * * *
80903959 ATGGTCTTACATTGGCTCACATATCAATGCCAATGCCATGTCCTAGAC
1 ATGGTCTTATACTAGCTCACATATCAATGCCAATGCCATGTCCCAGAC
* * *
80904007 ATGGTCTTATACTGGCTCACATATCAACGCCGATGCCATGTCCCAGAC
1 ATGGTCTTATACTAGCTCACATATCAATGCCAATGCCATGTCCCAGAC
* * * * * * * *
80904055 ATGGTCTTACAC-ATGATCTCTTATCAATGCCGATGCCATATACCAGAT
1 ATGGTCTTATACTA-GCTCACATATCAATGCCAATGCCATGTCCCAGAC
80904103 ATGGTCTTA
1 ATGGTCTTA
80904112 CACGGGATCT
Statistics
Matches: 171, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
47 2 0.01
48 169 0.99
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGGTCTTATACTAGCTCACATATCAATGCCAATGCCATGTCCCAGAC
Found at i:80912991 original size:16 final size:16
Alignment explanation
Indices: 80912970--80913009 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
80912960 GGTTCTTCAC
*
80912970 TTATTTGTTCACTTAT
1 TTATTTATTCACTTAT
80912986 TTATTTATTCACTTAT
1 TTATTTATTCACTTAT
80913002 TT-TTTATT
1 TTATTTATT
80913010 TGCATATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.20, C:0.10, G:0.03, T:0.68
Consensus pattern (16 bp):
TTATTTATTCACTTAT
Found at i:80916534 original size:31 final size:31
Alignment explanation
Indices: 80916496--80916574 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
80916486 TTTAACGGTT
80916496 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
80916527 ACTGGGCCAAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
80916558 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
80916575 ACTGTAAACG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:80916645 original size:42 final size:42
Alignment explanation
Indices: 80916598--80916689 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
80916588 TGGCCTATAG
* ** *
80916598 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80916640 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
80916682 GCCCATTT
1 GCCCATTT
80916690 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:80917743 original size:27 final size:27
Alignment explanation
Indices: 80917681--80917758 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
80917671 GGGCATATTC
80917681 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
80917708 GTCACTTTACCCTACAGGGGCT-TTACG
1 GTCATTTTACCATACAGGGG-TATTACG
* *
80917735 GTCTTTTTACC-TAATAGGGGTATT
1 GTCATTTTACCAT-ACAGGGGTATT
80917759 TTAGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 2 0.05
27 40 0.93
28 1 0.02
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:80917949 original size:54 final size:54
Alignment explanation
Indices: 80917889--80918028 Score: 201
Period size: 54 Copynumber: 2.6 Consensus size: 54
80917879 TGTAAATCAG
80917889 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAA
* *
80917943 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTTGGTAATTTCACAAACCAA
* * ** *
80917997 AGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
80918029 AAACAGTAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
53 1 0.01
54 74 0.97
55 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAAACCAA
Found at i:80918028 original size:27 final size:27
Alignment explanation
Indices: 80917775--80918028 Score: 176
Period size: 27 Copynumber: 9.3 Consensus size: 27
80917765 ATTTCATCCT
* * *
80917775 TCAAGGGTGTTTTGGTAAATCTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
* ** *
80917802 CCAAGGGTATTTCAGTAATCTTGTA-AAC
1 TCAAGGGTATTTTGGTAAT-TT-TACAAA
* * *
80917830 T-AATGGTATTTCT-ATAATTTTTAGAAA
1 TCAAGGGTATTT-TGGTAA-TTTTACAAA
* * **
80917857 GTCAAAGGTATTTCT-GTAACTTTGTAAA
1 -TCAAGGGTATTT-TGGTAATTTTACAAA
*
80917885 TCAGGGGTATTTTGGTAATTTTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
** *
80917912 TTGAGGGTATTTTGGTAATTTCACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
*
80917939 CCAAGGGTATTTTGGTAATTTTACAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
*
80917966 -CTAGGGGTATTTTGGTAATTTTACAAA
1 TC-AAGGGTATTTTGGTAATTTTACAAA
* * * **
80917993 CCAAAGGTATTTTAGTAATTTTGTAAA
1 TCAAGGGTATTTTGGTAATTTTACAAA
*
80918020 TCGAGGGTA
1 TCAAGGGTA
80918029 AAACAGTAAT
Statistics
Matches: 178, Mismatches: 39, Indels: 20
0.75 0.16 0.08
Matches are distributed among these distances:
26 4 0.02
27 146 0.82
28 12 0.07
29 16 0.09
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
TCAAGGGTATTTTGGTAATTTTACAAA
Found at i:80918036 original size:27 final size:27
Alignment explanation
Indices: 80918006--80918185 Score: 216
Period size: 27 Copynumber: 6.6 Consensus size: 27
80917996 AAGGTATTTT
* *
80918006 AGTAATTTTGTAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
80918033 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
80918060 AATAATTCTATAAATCGAGGGTTAAAAT
1 AGTAATTCTATAAATCGAGGG-TAAAAC
*
80918088 GGTAATTCTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * * *
80918115 GGTAATTTTATAAATCGGGGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
80918142 AGTAATTATGTAAATCGGGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
80918169 GGTAATTCTATAAATCG
1 AGTAATTCTATAAATCG
80918186 GGGGAACTTT
Statistics
Matches: 133, Mismatches: 19, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
27 109 0.82
28 24 0.18
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.29
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:80918169 original size:54 final size:54
Alignment explanation
Indices: 80918007--80918189 Score: 240
Period size: 54 Copynumber: 3.4 Consensus size: 54
80917997 AGGTATTTTA
* * * * * *
80918007 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACA
1 GTAATTCTATAAATCGGGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
* * * *
80918061 ATAATTCTATAAATCGAGGGTTAAAATGGTAATTCTATAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCG-GGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
* * *
80918116 GTAATTTTATAAATCGGGGGTAAAATAGTAATTATGTAAATCGGGGGTAAAACG
1 GTAATTCTATAAATCGGGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
80918170 GTAATTCTATAAATCGGGGG
1 GTAATTCTATAAATCGGGGG
80918190 AACTTTGGTA
Statistics
Matches: 110, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
54 65 0.59
55 45 0.41
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (54 bp):
GTAATTCTATAAATCGGGGGTAAAATAGTAATTCTGTAAATCGAGGGTAAAACG
Found at i:80918205 original size:81 final size:82
Alignment explanation
Indices: 80918007--80918191 Score: 221
Period size: 82 Copynumber: 2.3 Consensus size: 82
80917997 AGGTATTTTA
* * * * * * ** *
80918007 GTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCAAGGGTAAAACAATAATTCTATA
1 GTAATTCTATAAATCGAGGGGAAAACGGTAATTTTATAAATCGGGGGTAAAACAATAATTATATA
* *
80918072 AATCGAGGGTTAAAATG
66 AATCGAGGGGTAAAACG
* * * *
80918089 GTAATTCTATAAATCGAGGGTAAAACGGTAATTTTATAAATCGGGGGTAAAATAGTAATTATGTA
1 GTAATTCTATAAATCGAGGGGAAAACGGTAATTTTATAAATCGGGGGTAAAACAATAATTATATA
80918154 AATCG-GGGGTAAAACG
66 AATCGAGGGGTAAAACG
80918170 GTAATTCTATAAATCG-GGGGAA
1 GTAATTCTATAAATCGAGGGGAA
80918192 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
80 5 0.06
81 25 0.28
82 59 0.66
ACGTcount: A:0.41, C:0.08, G:0.23, T:0.29
Consensus pattern (82 bp):
GTAATTCTATAAATCGAGGGGAAAACGGTAATTTTATAAATCGGGGGTAAAACAATAATTATATA
AATCGAGGGGTAAAACG
Found at i:80918227 original size:27 final size:26
Alignment explanation
Indices: 80918197--80918286 Score: 117
Period size: 27 Copynumber: 3.3 Consensus size: 26
80918187 GGGAACTTTG
80918197 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-TCGAAGGTATTTCA
*
80918224 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTAC-AATCGAAGGTATTTCA
* * *
80918251 GTATTTTTACAAACTAAGGGTATTTCA
1 GTAATTTTACAATCGAA-GGTATTTCA
80918278 GTAATTTTA
1 GTAATTTTA
80918287 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.07
27 49 0.89
28 2 0.04
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (26 bp):
GTAATTTTACAATCGAAGGTATTTCA
Found at i:80918228 original size:54 final size:54
Alignment explanation
Indices: 80918170--80918283 Score: 124
Period size: 54 Copynumber: 2.1 Consensus size: 54
80918160 GGGTAAAACG
* * * *
80918170 GTAATTCTATAAATCGGGGGAACTTT-GGTAATTTTACAAGTCGAA-GGTATTTCA
1 GTAATTCTACAAATCGAGGGAA-TTTCAGTAATTTTACAA-ACGAAGGGTATTTCA
* * * *
80918224 GTAATTTTACAAATCGAGGGTATTTCAGTATTTTTACAAACTAAGGGTATTTCA
1 GTAATTCTACAAATCGAGGGAATTTCAGTAATTTTACAAACGAAGGGTATTTCA
80918278 GTAATT
1 GTAATT
80918284 TTAGTAAACT
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.12
54 44 0.88
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.38
Consensus pattern (54 bp):
GTAATTCTACAAATCGAGGGAATTTCAGTAATTTTACAAACGAAGGGTATTTCA
Found at i:80918300 original size:27 final size:26
Alignment explanation
Indices: 80918197--80918301 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
80918187 GGGAACTTTG
* *
80918197 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAA-ACTAAGGTATTTCA
* *
80918224 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAA-CTAAGGTATTTCA
*
80918251 GTATTTTTACAAACTAAGGGTATTTCA
1 GTAATTTTACAAACTAA-GGTATTTCA
* *
80918278 GTAATTTTAGTAAACTAAAGTATT
1 GTAATTTTA-CAAACTAAGGTATT
80918302 CTAAACAAGG
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.03
27 58 0.87
28 7 0.10
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (26 bp):
GTAATTTTACAAACTAAGGTATTTCA
Found at i:80932813 original size:9 final size:9
Alignment explanation
Indices: 80932799--80932875 Score: 86
Period size: 9 Copynumber: 8.6 Consensus size: 9
80932789 ATAAGTATAA
80932799 AATTAACCG
1 AATTAACCG
*
80932808 AATTAATCG
1 AATTAACCG
80932817 AATTAACCG
1 AATTAACCG
*
80932826 AATTACCCG
1 AATTAACCG
80932835 AATT-ACCTG
1 AATTAACC-G
80932844 AATT-ACTCG
1 AATTAAC-CG
*
80932853 AATTAACCA
1 AATTAACCG
*
80932862 AATTAACCA
1 AATTAACCG
80932871 AATTA
1 AATTA
80932876 TTTGTGTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
8 2 0.03
9 55 0.92
10 3 0.05
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:80932908 original size:6 final size:6
Alignment explanation
Indices: 80932897--80932935 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
80932887 TTATATGTTC
*
80932897 TTTATT TTTATT TTTAGTT TTAGATT TTTATT TTTATT T
1 TTTATT TTTATT TTTA-TT TT-TATT TTTATT TTTATT T
80932936 ATTAAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 20 0.69
7 8 0.28
8 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:80933595 original size:21 final size:21
Alignment explanation
Indices: 80933556--80933595 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
80933546 CATATCTGGG
*
80933556 ATTTTATTTCTTTTTTTTCAA
1 ATTTTATTTCTTCTTTTTCAA
80933577 ATTTTAATTTC-TCTTTTTC
1 ATTTT-ATTTCTTCTTTTTC
80933596 CCCAAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.12, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTTATTTCTTCTTTTTCAA
Found at i:80934525 original size:13 final size:14
Alignment explanation
Indices: 80934487--80934527 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
80934477 ATGGGGGTAG
80934487 GATTCTGCATATCT
1 GATTCTGCATATCT
* *
80934501 -ATACTGCTTATCT
1 GATTCTGCATATCT
80934514 GATTCTG-ATATCT
1 GATTCTGCATATCT
80934527 G
1 G
80934528 TATCTGAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.44
Consensus pattern (14 bp):
GATTCTGCATATCT
Found at i:80943545 original size:26 final size:25
Alignment explanation
Indices: 80943514--80943563 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
80943504 AATGAGCATA
* * *
80943514 TAAAATGTGATATTTAATAATAAATT
1 TAAAATATAATATATAATAA-AAATT
80943540 TAAAATATAATATATAATAAAAAT
1 TAAAATATAATATATAATAAAAAT
80943564 ATATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 4 0.19
26 17 0.81
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (25 bp):
TAAAATATAATATATAATAAAAATT
Found at i:80943599 original size:17 final size:17
Alignment explanation
Indices: 80943544--80943599 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
80943534 TAAATTTAAA
80943544 ATATAATATATAATAAAA-
1 ATATAAT-TAT-ATAAAAT
80943562 ATAT-ATT-TATAAGAAT
1 ATATAATTATATAA-AAT
80943578 A-ATAATTATATAAAAT
1 ATATAATTATATAAAAT
80943594 ATATAA
1 ATATAA
80943600 AATATATTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
14 4 0.12
15 5 0.15
16 9 0.27
17 11 0.33
18 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (17 bp):
ATATAATTATATAAAAT
Found at i:80944120 original size:18 final size:18
Alignment explanation
Indices: 80944084--80944253 Score: 247
Period size: 18 Copynumber: 9.5 Consensus size: 18
80944074 AATCATATCT
*
80944084 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
*
80944103 TCTATGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
80944121 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
*
80944138 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
80944155 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
80944173 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
80944191 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
80944209 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
*
80944226 TTTAAGATTGCATATCATA
1 TCTAAGATTGCA-ATCATA
80944245 TCTAAGATT
1 TCTAAGATT
80944254 ATATTTCCAT
Statistics
Matches: 139, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
17 48 0.35
18 67 0.48
19 24 0.17
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:80944209 original size:88 final size:90
Alignment explanation
Indices: 80944084--80944253 Score: 290
Period size: 88 Copynumber: 1.9 Consensus size: 90
80944074 AATCATATCT
* *
80944084 TCTAAGATTGTATATCATATCTATGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTG-
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGA
80944148 TATCATATCTAAGATTGCAATCATA
66 TATCATATCTAAGATTGCAATCATA
*
80944173 TCTAAGATTGCA-ATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATTTAAGATTGC
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTG-
80944237 ATATCATATCTAAGATT
65 ATATCATATCTAAGATT
80944254 ATATTTCCAT
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
88 49 0.64
89 11 0.14
90 16 0.21
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (90 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATATCTAAGATTGA
TATCATATCTAAGATTGCAATCATA
Found at i:80949243 original size:25 final size:25
Alignment explanation
Indices: 80949215--80949295 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
80949205 CAGCTCTTAT
80949215 GAGCTTCTCGATATTTGGCTCTCAC
1 GAGCTTCTCGATATTTGGCTCTCAC
** *
80949240 GAGCTTCTC-ATTATTTGAATTTC-C
1 GAGCTTCTCGA-TATTTGGCTCTCAC
* * *
80949264 GGAGCTTCTCGATAATTGGCTCTTAT
1 -GAGCTTCTCGATATTTGGCTCTCAC
80949290 GAGCTT
1 GAGCTT
80949296 ACTGATTAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
24 2 0.05
25 40 0.93
26 1 0.02
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.40
Consensus pattern (25 bp):
GAGCTTCTCGATATTTGGCTCTCAC
Found at i:80949313 original size:50 final size:50
Alignment explanation
Indices: 80949215--80949333 Score: 127
Period size: 50 Copynumber: 2.4 Consensus size: 50
80949205 CAGCTCTTAT
* *
80949215 GAGCTTCTCGATATTTGGCTCTCACGAGCTTCTCATTATTTGAATTTCCG
1 GAGCTTCTCGATAATTGGCTCTCACGAGCTTCTCATTATATGAATTTCCG
* * * **
80949265 GAGCTTCTCGATAATTGGCTCTTATGAGCTTACTGATTA-ATGGCTTTCCG
1 GAGCTTCTCGATAATTGGCTCTCACGAGCTT-CTCATTATATGAATTTCCG
*
80949315 AAGCTTC-CTGAT-ATTGGCT
1 GAGCTTCTC-GATAATTGGCT
80949334 AGCATGAGCT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
49 8 0.14
50 45 0.76
51 6 0.10
ACGTcount: A:0.19, C:0.22, G:0.20, T:0.39
Consensus pattern (50 bp):
GAGCTTCTCGATAATTGGCTCTCACGAGCTTCTCATTATATGAATTTCCG
Found at i:80951970 original size:42 final size:43
Alignment explanation
Indices: 80951855--80952008 Score: 138
Period size: 42 Copynumber: 3.6 Consensus size: 43
80951845 CATAGGATTC
* * * *
80951855 CGATATGTGATTTCGTGTAAGACCACGTCTGGGAC-GTTGGCAT
1 CGATATTTGATTACGTGTAAGACCATGTCTAGGACAG-TGGCAT
* * *
80951898 TGA-ATTGTGATTTATGTGTAAGATCATGTCTAGGACA-TCGGCAT
1 CGATATT-TGA-TTACGTGTAAGACCATGTCTAGGACAGT-GGCAT
* *
80951942 CG-TATTTGACTT-CGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGA-TTACGTGTAAGACCATGTCTAGGACAGTGGCAT
*
80951984 CGATATTTGATTACATGTAAGACCA
1 CGATATTTGATTACGTGTAAGACCA
80952009 CATCTTGGAC
Statistics
Matches: 88, Mismatches: 15, Indels: 16
0.74 0.13 0.13
Matches are distributed among these distances:
42 30 0.34
43 29 0.33
44 29 0.33
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
CGATATTTGATTACGTGTAAGACCATGTCTAGGACAGTGGCAT
Found at i:80952025 original size:43 final size:44
Alignment explanation
Indices: 80951855--80952026 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 44
80951845 CATAGGATTC
* *
80951855 CGATATGTGA-TTTCGTGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGACTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
* * * * * * * *
80951898 TGA-ATTGTGATTTATGTGTAAGATCATGTCTAGGACATCGGCAT
1 CGATATT-TGACTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
80951942 CG-TATTTGACTT-CGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 CGATATTTGACTTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* * *
80951984 CGATATTTGA-TTACATGTAAGACCACATCTTGGACGTTGGCAT
1 CGATATTTGACTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
80952027 TGTATGAGTT
Statistics
Matches: 100, Mismatches: 20, Indels: 18
0.72 0.14 0.13
Matches are distributed among these distances:
42 29 0.29
43 40 0.40
44 31 0.31
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (44 bp):
CGATATTTGACTTACGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:80953384 original size:41 final size:41
Alignment explanation
Indices: 80953338--80953595 Score: 190
Period size: 41 Copynumber: 6.5 Consensus size: 41
80953328 GGCTTTTCTA
* *
80953338 GTCCAAACGCCACTAAAAACTGAGCAATAACGGCATTTTTT
1 GTCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
*
80953379 GTCCAAACGCCACTAAAAACTGAGCAATAGCGGCA-TTTTT
1 GTCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
* ** * * *
80953419 GTTCCAAATGCCGTTAAAAACTAAACAATAGTGGC----GTT
1 G-TCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
* * * *
80953457 -TCCAAACACCACTAAAAACTAAACAATAGAGGCATTTTTG
1 GTCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
* *** * * *
80953497 GTACAAACGAGGCAAAAAACTAAG-AATAGTGGCATTTTTG
1 GTCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
* * * * ** * *
80953537 GTCCAAACGCCGCCAAAAATTGAGCAATAGCGGTGTTTCTG
1 GTCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
*
80953578 GTCCAAAAGCCA-TAAAAA
1 GTCCAAACGCCACTAAAAA
80953596 GTTGAGCAAC
Statistics
Matches: 174, Mismatches: 36, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
36 28 0.16
38 2 0.01
40 45 0.26
41 99 0.57
ACGTcount: A:0.39, C:0.21, G:0.17, T:0.22
Consensus pattern (41 bp):
GTCCAAACGCCACTAAAAACTAAGCAATAGCGGCATTTTTT
Found at i:80953515 original size:77 final size:76
Alignment explanation
Indices: 80953380--80953529 Score: 183
Period size: 77 Copynumber: 2.0 Consensus size: 76
80953370 GCATTTTTTG
* * * * * * * * **
80953380 TCCAAACGCCACTAAAAACTGAGCAATAGCGGCATTTTTGTTCCAAATGCCGTTAAAAACTAAAC
1 TCCAAACACCACTAAAAACTAAACAATAGAGGCATTTTTGGTACAAACGACGCAAAAAACT-AAC
80953445 AATAGTGGCGTT
65 AATAGTGGCGTT
* *
80953457 TCCAAACACCACTAAAAACTAAACAATAGAGGCATTTTTGGTACAAACGAGGCAAAAAACTAAGA
1 TCCAAACACCACTAAAAACTAAACAATAGAGGCATTTTTGGTACAAACGACGCAAAAAACTAACA
80953522 ATAGTGGC
66 ATAGTGGC
80953530 ATTTTTGGTC
Statistics
Matches: 61, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
76 11 0.18
77 50 0.82
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (76 bp):
TCCAAACACCACTAAAAACTAAACAATAGAGGCATTTTTGGTACAAACGACGCAAAAAACTAACA
ATAGTGGCGTT
Found at i:80953575 original size:117 final size:118
Alignment explanation
Indices: 80953339--80953575 Score: 271
Period size: 118 Copynumber: 2.0 Consensus size: 118
80953329 GCTTTTCTAG
* * * * * * * *
80953339 TCCAAACGCCACTAAAAACTGAGCAATAACGGCATTTTTTGTCCAAACGCCACTAAAAACTGAGC
1 TCCAAACACCACTAAAAACTAAACAATAACGGCATTTTTGGTACAAACGACACAAAAAACTAAGC
* * ** *
80953404 AATAGCGGCATTTTTGTTCCAAATGCCGTTAAAAACTAAACAATAGTGGCGTT
66 AATAGCGGCATTTTTGGTCCAAACGCCGCCAAAAACTAAACAATAGCGGCGTT
**
80953457 TCCAAACACCACTAAAAACTAAACAATAGA-GGCATTTTTGGTACAAACGAGGCAAAAAACTAAG
1 TCCAAACACCACTAAAAACTAAACAATA-ACGGCATTTTTGGTACAAACGACACAAAAAACTAAG
* * * * *
80953521 -AATAGTGGCATTTTTGGTCCAAACGCCGCCAAAAATTGAGCAATAGCGGTGTT
65 CAATAGCGGCATTTTTGGTCCAAACGCCGCCAAAAACTAAACAATAGCGGCGTT
80953574 TC
1 TC
80953576 TGGTCCAAAA
Statistics
Matches: 98, Mismatches: 20, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
117 45 0.46
118 52 0.53
119 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (118 bp):
TCCAAACACCACTAAAAACTAAACAATAACGGCATTTTTGGTACAAACGACACAAAAAACTAAGC
AATAGCGGCATTTTTGGTCCAAACGCCGCCAAAAACTAAACAATAGCGGCGTT
Found at i:80954238 original size:8 final size:7
Alignment explanation
Indices: 80954172--80954240 Score: 50
Period size: 8 Copynumber: 9.3 Consensus size: 7
80954162 GGGCTTGAGA
*
80954172 TTTAGTG
1 TTTAGGG
*
80954179 TTTAGAG
1 TTTAGGG
80954186 TTTAGGG
1 TTTAGGG
*
80954193 TCTTAGTG
1 T-TTAGGG
*
80954201 TTTATGGT
1 TTTA-GGG
80954209 TTTAAGGG
1 TTT-AGGG
80954217 -TTAGGG
1 TTTAGGG
80954223 TATTAGGG
1 T-TTAGGG
80954231 TTTAAGGG
1 TTT-AGGG
80954239 TT
1 TT
80954241 ATAGATTTTG
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
6 4 0.08
7 20 0.40
8 25 0.50
9 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:80954671 original size:41 final size:41
Alignment explanation
Indices: 80954600--80954783 Score: 237
Period size: 41 Copynumber: 4.5 Consensus size: 41
80954590 CTCTAGTGGC
* * *
80954600 ATTAGTGGCGC-TTTCTGAAAAATGCCGCTAAAGATCGAGA
1 ATTAGCGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGA
* *
80954640 ATTACCGGCGCTTTTTTGAAAAACGCTGCTAAAGATCGAGA
1 ATTAGCGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGA
* *
80954681 ATTAGCGGCGCTTTTTTGAAAAACGCTGCTAAAGATTGAGA
1 ATTAGCGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGA
** * *
80954722 ATTAGCATCGCTTTTTTGAAAAGCACCGCTAAAGATCGAGA
1 ATTAGCGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGA
* *
80954763 ATTAGCTGCGCATTTTT-AAAA
1 ATTAGCGGCGCTTTTTTGAAAA
80954784 CTGCTGCAAA
Statistics
Matches: 127, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
40 13 0.10
41 114 0.90
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTTGAAAAACGCCGCTAAAGATCGAGA
Found at i:80956950 original size:43 final size:43
Alignment explanation
Indices: 80956887--80957004 Score: 184
Period size: 43 Copynumber: 2.7 Consensus size: 43
80956877 TTCAATAAAC
*
80956887 TCGCACACTTAGTGCTAATTAATTAACCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
* *
80956930 TCGCACACTTAGTACCAATTAATTAGCCGAAGCTATAATTGTA
1 TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
80956973 TCGCACACTTAGTGCCAA-TAGATTAAACCGAA
1 TCGCACACTTAGTGCCAATTA-ATT-AACCGAA
80957005 CTTATATCGG
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
42 2 0.03
43 60 0.88
44 6 0.09
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (43 bp):
TCGCACACTTAGTGCCAATTAATTAACCGAAGCTATAATTGTA
Found at i:80959962 original size:5 final size:5
Alignment explanation
Indices: 80959952--80959979 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
80959942 TTGTGTGTTA
80959952 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
80959980 TCACAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:80965282 original size:45 final size:45
Alignment explanation
Indices: 80965226--80965316 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
80965216 GAACTATGTG
* *
80965226 ATCTGAACTCATTGAGCTGTGGTTTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGCTGTGGTCTGAGTTCATGATATATATGAC
* **
80965271 ATCTGAACTCATTGAGTTGTGGTCTGAGTTTGTGATATATATGAC
1 ATCTGAACTCATTGAGCTGTGGTCTGAGTTCATGATATATATGAC
80965316 A
1 A
80965317 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGAGCTGTGGTCTGAGTTCATGATATATATGAC
Found at i:80967140 original size:21 final size:21
Alignment explanation
Indices: 80967116--80967191 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
80967106 CTAGAAAATA
80967116 TGTGATCTGAACTCATTGAGT
1 TGTGATCTGAACTCATTGAGT
* * ** *
80967137 TGTGGTTTGAGTTCA-TGATTT
1 TGTGATCTGAACTCATTGA-GT
80967158 ATGTGACATCTGAACTCATTGAGT
1 -TGTG--ATCTGAACTCATTGAGT
*
80967182 TGTGGTCTGA
1 TGTGATCTGA
80967192 GCTCGTGATA
Statistics
Matches: 39, Mismatches: 11, Indels: 10
0.65 0.18 0.17
Matches are distributed among these distances:
20 3 0.08
21 17 0.44
22 4 0.10
23 4 0.10
24 8 0.21
25 3 0.08
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.41
Consensus pattern (21 bp):
TGTGATCTGAACTCATTGAGT
Found at i:80967176 original size:45 final size:45
Alignment explanation
Indices: 80967120--80967210 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
80967110 AAAATATGTG
* * * *
80967120 ATCTGAACTCATTGAGTTGTGGTTTGAGTTCATGATTTATGTGAC
1 ATCTGAACTCATTGAGTTGTGGTCTGAGCTCATGATATATATGAC
*
80967165 ATCTGAACTCATTGAGTTGTGGTCTGAGCTCGTGATATATATGAC
1 ATCTGAACTCATTGAGTTGTGGTCTGAGCTCATGATATATATGAC
80967210 A
1 A
80967211 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTGGTCTGAGCTCATGATATATATGAC
Found at i:80968118 original size:13 final size:13
Alignment explanation
Indices: 80968100--80968124 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80968090 AAATAGGTTA
80968100 ACAAATATGATAG
1 ACAAATATGATAG
80968113 ACAAATATGATA
1 ACAAATATGATA
80968125 TTGGTGTGGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.12, T:0.24
Consensus pattern (13 bp):
ACAAATATGATAG
Found at i:80975505 original size:21 final size:21
Alignment explanation
Indices: 80975481--80975550 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
80975471 AATATGTGAC
80975481 CTGAACTCATTGAGTTGTGGT
1 CTGAACTCATTGAGTTGTGGT
** * *
80975502 CTGAGTTCA-TGATATATGTGACAT
1 CTGAACTCATTGA-GT-TGTG--GT
*
80975526 CCGAACTCATTGAGTTGTGGT
1 CTGAACTCATTGAGTTGTGGT
80975547 CTGA
1 CTGA
80975551 GTTCGTGATA
Statistics
Matches: 34, Mismatches: 10, Indels: 10
0.63 0.19 0.19
Matches are distributed among these distances:
20 3 0.09
21 12 0.35
22 4 0.12
23 4 0.12
24 8 0.24
25 3 0.09
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.36
Consensus pattern (21 bp):
CTGAACTCATTGAGTTGTGGT
Found at i:80975569 original size:45 final size:45
Alignment explanation
Indices: 80975483--80975569 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
80975473 TATGTGACCT
**
80975483 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATAAATGACATCC
*
80975528 GAACTCATTGAGTTGTGGTCTGAGTTCGTGATATAAATGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATAAATGACA
80975570 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.34
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATAAATGACATCC
Found at i:80980601 original size:99 final size:100
Alignment explanation
Indices: 80980484--80980722 Score: 304
Period size: 101 Copynumber: 2.4 Consensus size: 100
80980474 AGACAAGGTT
* * * *
80980484 TTACTCACACA-CATATATCGGAATCACATTTCGATGCCAACGTATAAAACGTGGACTTACT-CG
1 TTACTCGCACATCACATATCGGAATCACATATCGATGCCAACATATAAAACGTGGACTTACTACG
*
80980547 CACACATATCA-GAATCACATATAGATGCCATGGTC
66 CACACATAT-AGGAATCACACATAGATGCCATGGTC
* * * *
80980582 TTACTCGCACATCACATATCGGAATCACATATCGATGGCAACATATTAAACTTGGTCTTACTCAC
1 TTACTCGCACATCACATATCGGAATCACATATCGATGCCAACATATAAAACGTGGACTTACT-AC
* **
80980647 GCACATATATAGGAATCACACATCTATGCCATGGTC
65 GCACACATATAGGAATCACACATAGATGCCATGGTC
* *
80980683 TTACTCGCACATCACATATCGAAATCCACATGTCGATGCC
1 TTACTCGCACATCACATATCGGAAT-CACATATCGATGCC
80980723 CCATATACAT
Statistics
Matches: 121, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
98 10 0.08
99 43 0.36
100 1 0.01
101 55 0.45
102 12 0.10
ACGTcount: A:0.33, C:0.27, G:0.14, T:0.26
Consensus pattern (100 bp):
TTACTCGCACATCACATATCGGAATCACATATCGATGCCAACATATAAAACGTGGACTTACTACG
CACACATATAGGAATCACACATAGATGCCATGGTC
Found at i:80982873 original size:26 final size:26
Alignment explanation
Indices: 80982803--80982976 Score: 255
Period size: 26 Copynumber: 6.8 Consensus size: 26
80982793 CCTCTTTAAT
* **
80982803 AACTGGGGCA-AAGCCATTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
* *
80982828 AGCTAGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
80982853 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
80982879 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
80982905 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
80982931 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
80982957 AATTGGGGCAT-AGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
80982977 GCACTTCCTC
Statistics
Matches: 136, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
25 37 0.27
26 99 0.73
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:80983051 original size:20 final size:20
Alignment explanation
Indices: 80983026--80983072 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
80983016 TTATGAATAC
80983026 ATCATGTGCATATCATA-CA
1 ATCATGTGCATATCATATCA
80983045 TATCATGTGCATATCATATCA
1 -ATCATGTGCATATCATATCA
80983066 ATCATGT
1 ATCATGT
80983073 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATATCA
Found at i:80983136 original size:25 final size:25
Alignment explanation
Indices: 80983108--80983155 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
80983098 ATAAGTAAAC
* * *
80983108 CCTAGGGGTATAACGGTCATTTTTA
1 CCTAGGGGAAAAACAGTCATTTTTA
80983133 CCTAGGGGAAAAACAGTCATTTT
1 CCTAGGGGAAAAACAGTCATTTT
80983156 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (25 bp):
CCTAGGGGAAAAACAGTCATTTTTA
Found at i:80990447 original size:47 final size:47
Alignment explanation
Indices: 80990378--80990482 Score: 176
Period size: 47 Copynumber: 2.2 Consensus size: 47
80990368 CCCTTCGGGA
*
80990378 CTTATCACATTTATACACTTTCACATT-CATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCAC-TTCCATCACATTGGCCATTCGAC
*
80990425 CTTATCACATATATACACTTTCACTTCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACTTCCATCACATTGGCCATTCGAC
80990472 CTTATCACATA
1 CTTATCACATA
80990483 ATTAATACTG
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
46 2 0.04
47 53 0.96
ACGTcount: A:0.28, C:0.30, G:0.07, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACTTCCATCACATTGGCCATTCGAC
Found at i:80997622 original size:20 final size:20
Alignment explanation
Indices: 80997597--80997636 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
80997587 AATGAGTAGT
80997597 AAACCCGATTAACTCCTAGC
1 AAACCCGATTAACTCCTAGC
80997617 AAACCCGATTAACTCCTAGC
1 AAACCCGATTAACTCCTAGC
80997637 TTTCACCCGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.35, G:0.10, T:0.20
Consensus pattern (20 bp):
AAACCCGATTAACTCCTAGC
Found at i:80997854 original size:83 final size:83
Alignment explanation
Indices: 80997715--80997868 Score: 272
Period size: 83 Copynumber: 1.9 Consensus size: 83
80997705 ATACTTTGGA
*
80997715 AAATTTGTGATTACAAGTAGGTTTGGACAATTAGAATTGTGATCGAAGAGCTTCTATCAAAGATA
1 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGAATTGTGATCGAAGAGCTTCTATCAAAGATA
80997780 AGCAGACCGTGTTGAGTC
66 AGCAGACCGTGTTGAGTC
** *
80997798 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGGGTTGTGATCGAGGAGCTTCTATCAAAGATA
1 AAATTTGCGATTACAAGTAGGTTTGGACAATTAGAATTGTGATCGAAGAGCTTCTATCAAAGATA
80997863 AGCAGA
66 AGCAGA
80997869 ATTTGGTGGT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 67 1.00
ACGTcount: A:0.34, C:0.12, G:0.25, T:0.29
Consensus pattern (83 bp):
AAATTTGCGATTACAAGTAGGTTTGGACAATTAGAATTGTGATCGAAGAGCTTCTATCAAAGATA
AGCAGACCGTGTTGAGTC
Found at i:80998288 original size:133 final size:134
Alignment explanation
Indices: 80997990--80998289 Score: 498
Period size: 133 Copynumber: 2.2 Consensus size: 134
80997980 ATATATTTCT
* *
80997990 AAAAATATTTTTATTTTCCGGAATATGATTTACCTATTTAGTTAATATTGTAACTTCTCTCCATT
1 AAAAATATTTTTATTTT-CGGAATATTATTTACCCATTTAGTTAATATTGTAACTTCTCTCCATT
*
80998055 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAAATATTTAAAACCATAAAATTGATT
65 TTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAAATATTTAAAACCATAAAACTGATT
80998120 TCTCA
130 TCTCA
* *
80998125 AAAAATATTTATATTTCCCAGG-ATATTATTTACCCATTTAGTTAATATTGTAA-TTCTCTCCAT
1 AAAAATATTTTTATTT-TC-GGAATATTATTTACCCATTTAGTTAATATTGTAACTTCTCTCCAT
80998188 TTTAAATTATTTTTCAATAAAATATTTACTCTAAAC-AAAAAATATTTAAAACCATAAAACTGAT
64 TTTAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAAATATTTAAAACCATAAAACTGAT
80998252 TTCTCA
129 TTCTCA
80998258 AAAAATATTTTTATTTTCGGAAATATTATTTA
1 AAAAATATTTTTATTTTCGG-AATATTATTTA
80998290 TCGATTTTTA
Statistics
Matches: 154, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
131 2 0.01
132 1 0.01
133 58 0.38
134 46 0.30
135 45 0.29
136 2 0.01
ACGTcount: A:0.40, C:0.12, G:0.04, T:0.43
Consensus pattern (134 bp):
AAAAATATTTTTATTTTCGGAATATTATTTACCCATTTAGTTAATATTGTAACTTCTCTCCATTT
TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAAATATTTAAAACCATAAAACTGATTT
CTCA
Found at i:80999078 original size:133 final size:133
Alignment explanation
Indices: 80998920--80999217 Score: 448
Period size: 133 Copynumber: 2.3 Consensus size: 133
80998910 ATATATTTCT
* *
80998920 AAAAATATTTTTATTTTCCAAAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
1 AAAAATATTTATATTTCCCAAAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
*
80998985 TAAATTATTTTTCAATAAAATATTTACTCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
66 TAAATTATTTTTCAATAAAATATTTAATCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
80999050 TCA
131 TCA
**
80999053 AAAAATATTTATATTTCCCGGAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
1 AAAAATATTTATATTTCCCAAAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
* *
80999118 TAAATTATTTTTCAATAAAATATTTAATCTAACCAAAAAATATTT------A-AAAACTGATTTC
66 TAAATTATTTTTCAATAAAATATTTAATCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
80999176 TCA
131 TCA
* * * *
80999179 AAAAATATTTTTATTTTCAAAAATATTATTTACCGATTT
1 AAAAATATTTATATTTCCCAAAATATTATTTACCTATTT
80999218 TTAAATGAAA
Statistics
Matches: 152, Mismatches: 13, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
126 47 0.31
127 1 0.01
133 104 0.68
ACGTcount: A:0.41, C:0.12, G:0.03, T:0.45
Consensus pattern (133 bp):
AAAAATATTTATATTTCCCAAAATATTATTTACCTATTTAGTTAATATTGTAATTCTCTCCATTT
TAAATTATTTTTCAATAAAATATTTAATCTAAACAAAAAATATTTAAAACCATAAAATTGATTTC
TCA
Found at i:80999208 original size:21 final size:20
Alignment explanation
Indices: 80999171--80999210 Score: 57
Period size: 18 Copynumber: 2.0 Consensus size: 20
80999161 TTAAAAACTG
80999171 ATTTCTCAAAAAATATTTTT
1 ATTTCTCAAAAAATATTTTT
80999191 ATTT-TC-AAAAATATTATTT
1 ATTTCTCAAAAAATATT-TTT
80999210 A
1 A
80999211 CCGATTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
19 6 0.32
20 4 0.21
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.50
Consensus pattern (20 bp):
ATTTCTCAAAAAATATTTTT
Found at i:81011052 original size:42 final size:42
Alignment explanation
Indices: 81010991--81012246 Score: 408
Period size: 42 Copynumber: 29.6 Consensus size: 42
81010981 GACACTAGGT
*
81010991 TGCCGATGGTG-TCCGAGGCTCCCGCACATCCAAGCACCAAGG
1 TGCCAATGGTGCT-CGAGGCTCCCGCACATCCAAGCACCAAGG
* *
81011033 TGCCAATGCTTCTCGAGGCTCCCGCACATCCAAGCACCAAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
*
81011075 TGCCAATGATGCTCGAGGCTCCCGCACATCCAAGGCACCAAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCACATCCAA-GCACCAAGG
* * ** *
81011118 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * * ** *
81011160 TTGCCGATTGTACCCGAGGCTCCCGCACGA-CTAAGGGCCGAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* *
81011203 TTGCCGATGGTGTTCGAGGCTCCCGCACATCCAAGCACCAAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
* * * * * *
81011246 TGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAG-GCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * * *
81011287 TTGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAG-GCCTAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * *
81011329 TTACCGATGGTGCCCGAGGCTCCCGCACGA-CCACAG-GCCTAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCA-AGCACCAAGG
* * *
81011372 TTGCCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
* * ** *
81011415 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * ** *
81011457 TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * * ** *
81011499 TTGCCGATGGTGGC-CAAAGCT-CC-TACATGACCAGGGGCCTAGG
1 -TGCCAATGGT-GCTCGAGGCTCCCGCACAT--CCAAGCACCAAGG
* ** *
81011542 TGCCGATGGTGGC-CGAGGCTCCCGCACGA-CCAAGTGCCTAGG
1 TGCCAATGGT-GCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * ** *
81011584 TTACCGATGGTGGC-CGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 -TGCCAATGGT-GCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * ** *
81011627 TTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * ** *
81011670 TTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
** * ** *
81011713 TGCTGATGGTGGC-CGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 TGCCAATGGT-GCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* ** * * ** *
81011755 TTCTGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * ** *
81011797 TTGCCGATGGTACCCGAGGCT-CC-CACGA-CCAGGGGCCTAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * *
81011838 TTGCCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
* * * * ** *
81011881 TGCCGATGGCGCCCAAGGCTCCCGCACGA-CCAAGGGCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * ** *
81011923 TGCCGATAGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
** * * * * ** *
81011965 TTGCTGATGGTGGC-CGAAGCT-CC-TACATGACTAGGGGCCTAGG
1 -TGCCAATGGT-GCTCGAGGCTCCCGCACAT--CCAAGCACCAAGG
* * * *
81012008 TGCCGATGGTGGC-CGAGGCTCCCGCATGA-CCAAGCGCCTAGG
1 TGCCAATGGT-GCTCGAGGCTCCCGCA-CATCCAAGCACCAAGG
* * ** *
81012050 TTGCCGATGGTGGC-CGAGGCTCCCGCACGA-CCAGGGGCCTAGG
1 -TGCCAATGGT-GCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* ** * * ** *
81012093 TTCTGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGG
1 TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * * * * ** *
81012135 TTGCCGATGGT-ATCGAGGCTCTCGCGCGA-CCAGGGGCCTAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG
* * *
81012177 TTGCCGATGGTGCCCGAGGCTCCCGCACATCTAAGCACCAAGG
1 -TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
** *
81012220 TGCCGGTGGTGCCCGAGGCTCCCGCAC
1 TGCCAATGGTGCTCGAGGCTCCCGCAC
81012247 GACAAACGTC
Statistics
Matches: 1051, Mismatches: 118, Indels: 90
0.83 0.09 0.07
Matches are distributed among these distances:
40 2 0.00
41 49 0.05
42 563 0.54
43 427 0.41
44 8 0.01
45 2 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (42 bp):
TGCCAATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG
Found at i:81011287 original size:23 final size:23
Alignment explanation
Indices: 81011261--81011330 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
81011251 ATGGTGCCCG
81011261 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
81011284 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
81011303 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
81011326 AGGTT
1 AGGTT
81011331 ACCGATGGTG
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 10 0.30
20 3 0.09
21 2 0.06
22 3 0.09
23 15 0.45
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:81012260 original size:85 final size:86
Alignment explanation
Indices: 81010985--81012249 Score: 1425
Period size: 85 Copynumber: 14.9 Consensus size: 86
81010975 ACCCGTGACA
* ** * * * * *
81010985 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTTCTCG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
**
81011048 AGGCTCCCGCAC-ATCCAAGCAC
65 AGGCTCCCGCACGA-CCAAGGGC
* * * * * *
81011070 CAAGG-TGCCAATGATGCTCGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCCC
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCC
81011132 GAGGCTCCCGCACGACCAAGGGC
64 GAGGCTCCCGCACGACCAAGGGC
* * * * * **
81011155 CGAGGTTGCCGATTGTACCCGAGGCTCCCGCACGACTAAGGGCCGAGGTTGCCGATGGTGTTCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
**
81011220 GGCTCCCGCAC-ATCCAAGCAC
66 GGCTCCCGCACGA-CCAAGGGC
* * * *
81011241 CAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * *
81011304 GGTTCTCGCACGATCAA-GGC
66 GGCTCCCGCACGACCAAGGGC
* *
81011324 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCACA-GGCCTAGGTTGCCGATGGTGCCCA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGCCTAGGTTGCCGATGGTGCCCG
**
81011388 AGGCTCCCGCAC-ATCCAAGCAC
65 AGGCTCCCGCACGA-CCAAGGGC
*
81011410 CAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
*
81011473 GGCTCTCGCACGACCAAGGGC
66 GGCTCCCGCACGACCAAGGGC
* * * ** * * *
81011494 CTAGGTTGCCGATGGTGGCCAAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGGCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
*
81011558 GGCTCCCGCACGACCAAGTGC
66 GGCTCCCGCACGACCAAGGGC
* * *
81011579 CTAGGTTACCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
*
81011644 GGCTCTCGCACGACCAAGGGC
66 GGCTCCCGCACGACCAAGGGC
* *
81011665 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCTGATGGTGGCCG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
81011728 AGGCTCCCGCACGACCAGGGGC
65 AGGCTCCCGCACGACCAAGGGC
* * *
81011750 CTAGGTT-CTGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
*
81011814 GGCT-CC-CACGACCAGGGGC
66 GGCTCCCGCACGACCAAGGGC
* ** * * *
81011833 CTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGCGCCCA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
81011896 AGGCTCCCGCACGACCAAGGGC
65 AGGCTCCCGCACGACCAAGGGC
* * * *
81011918 CTAGG-TGCCGATAGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCTGATGGTGGCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* ** * * *
81011982 AGCTCCTACATGACTAGGGGC
66 GGCTCCCGCACGACCAAGGGC
* * * *
81012003 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCATGACCAAGCGCCTAGGTTGCCGATGGTGGCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
*
81012067 GGCTCCCGCACGACCAGGGGC
66 GGCTCCCGCACGACCAAGGGC
* * **
81012088 CTAGGTT-CTGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-ATCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * *
81012151 GGCTCTCGCGCGACCAGGGGC
66 GGCTCCCGCACGACCAAGGGC
* ** * *
81012172 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCTAAGCACCAAGG-TGCCGGTGGTGCCCG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
81012235 AGGCTCCCGCACGAC
65 AGGCTCCCGCACGAC
81012250 AAACGTCCTA
Statistics
Matches: 1006, Mismatches: 146, Indels: 56
0.83 0.12 0.05
Matches are distributed among these distances:
83 43 0.04
84 274 0.27
85 542 0.54
86 146 0.15
87 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (86 bp):
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGC
Found at i:81012260 original size:127 final size:129
Alignment explanation
Indices: 81010985--81012249 Score: 1425
Period size: 127 Copynumber: 9.9 Consensus size: 129
81010975 ACCCGTGACA
* ** * * * * *
81010985 CTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTTCTCG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
** * * * *
81011048 AGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGATGCTCGAGGCTCCCGCAC-ATCCAAGG
65 AGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG
*
81011110 CAC
128 -GC
* * * *
81011113 CAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATTGTACCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * ** **
81011177 GGCTCCCGCACGACTAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAGCAC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * *
81011241 CAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * *
81011304 GGTTCTCGCACGATCAA-GGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCACA-GGC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGGC
* ** *
81011367 CTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCG
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCG
*
81011430 AGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
65 AGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * ** * * *
81011494 CTAGGTTGCCGATGGTGGCCAAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGGCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * *
81011558 GGCTCCCGCACGACCAAGTGCCTAGGTTACCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
*
81011622 CTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * *
81011687 GGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCTGATGGTGGCCGAGGCTCCCGCACGACCAGGGGC
66 GGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * *
81011750 CTAGGTT-CTGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTACCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * **
81011814 GGCT-CC-CACGACCAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCAC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGC
* * * *
81011876 CAAGG-TGCCGATGGCGCCCAAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATAGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * * * ** * * *
81011939 GGCTCTCGCACGACCAAGGGCCTAGGTTGCTGATGGTGGCCGAAGCTCCTACATGACTAGGGGC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
* * * *
81012003 CTAGG-TGCCGATGGTGGCCGAGGCTCCCGCATGACCAAGCGCCTAGGTTGCCGATGGTGGCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* * *
81012067 GGCTCCCGCACGACCAGGGGCCTAGGTT-CTGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
66 GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
** * * *
81012130 CTAGGTTGCCGATGGT-ATCGAGGCTCTCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGA
1 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
* ** * *
81012194 GGCTCCCGCAC-ATCTAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGAC
66 GGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGAC
81012250 AAACGTCCTA
Statistics
Matches: 974, Mismatches: 137, Indels: 53
0.84 0.12 0.05
Matches are distributed among these distances:
125 35 0.04
126 117 0.12
127 498 0.51
128 254 0.26
129 70 0.07
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (129 bp):
CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
Found at i:81012775 original size:14 final size:14
Alignment explanation
Indices: 81012756--81012787 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
81012746 TCCAATCACC
81012756 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
81012770 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
81012784 GGGC
1 GGGC
81012788 TAAATGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:81017898 original size:14 final size:14
Alignment explanation
Indices: 81017879--81017910 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
81017869 TCCAATCACC
81017879 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
81017893 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
81017907 GGGC
1 GGGC
81017911 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:81018735 original size:58 final size:59
Alignment explanation
Indices: 81018640--81018758 Score: 186
Period size: 58 Copynumber: 2.0 Consensus size: 59
81018630 GAGGGACAGA
* *
81018640 GACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTTGG
1 GACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTTGG
* * *
81018698 GACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTTGG
1 GACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTTGG
81018757 GA
1 GA
81018759 TTGGGGATGG
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 48 0.87
59 7 0.13
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (59 bp):
GACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTTGG
Found at i:81019375 original size:5 final size:5
Alignment explanation
Indices: 81019365--81019410 Score: 65
Period size: 5 Copynumber: 9.2 Consensus size: 5
81019355 TACAAGAAGT
* * *
81019365 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ACGGC ACGGC ACGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
81019411 GAAAATTGAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.22, C:0.26, G:0.39, T:0.13
Consensus pattern (5 bp):
ATGGC
Found at i:81022827 original size:42 final size:42
Alignment explanation
Indices: 81022694--81023718 Score: 540
Period size: 42 Copynumber: 24.2 Consensus size: 42
81022684 TTTTCTTTAG
* ** * * *
81022694 CCCGCACATCCGAGC-CACAAGGGTGCCCCTGCTGCTCGAGCCA
1 CCCGCACATCCAAGCAC-CAA-GGTGCCGATGGTGCTCGAGGCT
* * *
81022737 CCCGCACATCCAA-CGTCCTAGCTTGCCGATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGC-ACCAAG-GTGCCGATGGTGCT-CGAGGCT
* * *
81022780 CCCGCACATCCAAGCACCAAGGTGCCAATGTTTCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* *
81022822 CCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* *
81022864 CCCGCACATCCAAGGAACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAA-GCACCAAGGTGCCGATGGTGCTCGAGGCT
** * *
81022907 CCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
*** * * *
81022950 CCCGCACGA-CCAAGGGTCGAGGTTGCCGATGGTGTTCGAAGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* * *
81022993 TCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* * * * *
81023035 CTCGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* * ** *
81023077 CTCGCACGAT-CAAG-GCTTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* ** * * *
81023119 CCCGCACGA-CCAGGGGCCTAGGTTTCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
** *
81023162 CCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGC-CGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGT-GCTCGAGGCT
** * * *
81023204 CCCGCACGA-CCAAGGGCCTAGGTGCCAATGGT-CCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* ** * * *
81023245 CTCGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* * ** * * *
81023288 CCCGCACGA-CTAGGGGCCTAGGTTGCCGATGGTGCCCAAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* * *
81023331 ACTGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* ** * * *
81023373 CCCGCACGA-CCGAGGGCCTAGGTGCCGATGGTCCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* ** * *
81023415 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGC-CGAAGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGT-GCTCGAGGCT
* * ** *
81023458 -CC-TACATGACCAGGGGCCTAGGTGCCGATGGTGGCT-GAGGCT
1 CCCGCACAT--CCAAGCACCAAGGTGCCGATGGT-GCTCGAGGCT
* *
81023500 CCCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGC-CGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGT-GCTCGAGGCT
* * ** * * *
81023543 CCCTCACGA-CCAGGGGCCTAGGTTCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
* ** * * *
81023585 CTCGCACGA-CCAAGGGCCTAGGTTGCTGATGGT-ATCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTCGAGGCT
* * ** *
81023627 CCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGC-CGGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCTC-GAGGCT
* * *
81023670 CTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
81023712 CCCGCAC
1 CCCGCAC
81023719 GACAAACGTC
Statistics
Matches: 836, Mismatches: 107, Indels: 79
0.82 0.10 0.08
Matches are distributed among these distances:
40 2 0.00
41 37 0.04
42 427 0.51
43 363 0.43
44 6 0.01
45 1 0.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
Found at i:81023056 original size:23 final size:23
Alignment explanation
Indices: 81023030--81023099 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
81023020 ATGGTGCCCG
81023030 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
81023053 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
*
81023072 AGGTTCTCGCACGATCAAGGCTT
1 AGGTTCTCGCACGATCAAGGCCT
81023095 AGGTT
1 AGGTT
81023100 GCCGATGGTG
Statistics
Matches: 32, Mismatches: 11, Indels: 8
0.63 0.22 0.16
Matches are distributed among these distances:
19 10 0.31
20 3 0.09
21 2 0.06
22 3 0.09
23 14 0.44
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:81023754 original size:85 final size:87
Alignment explanation
Indices: 81022739--81023768 Score: 1059
Period size: 85 Copynumber: 12.1 Consensus size: 87
81022729 TCGAGCCACC
* * * ** *
81022739 CGCAC-ATCCAA-CGTCCTAGCTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAG
1 CGCACGATCCAAGCG-CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAG
* * * * *
81022801 G-TGCCAATGTTTCTCGAGGCTCC
64 GTTGCCGATGGTGCCCGAGGCTCT
* * * * * ** *
81022824 CGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGAACCAAG
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGGCCTAG
*
81022886 G-TGCCGATGGTGCCCGAGGCTCC
64 GTTGCCGATGGTGCCCGAGGCTCT
* * * * *
81022909 CGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGTCGAGGT
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
** *
81022973 TGCCGATGGTGTTCGAAGCT-T
66 TGCCGATGGTGCCCGAGGCTCT
* * * * * *
81022994 CCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGATCA-AGGCCTAGG
1 -CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGG
*
81023056 TTGCCGATGGTGCCCGAGGTTCT
65 TTGCCGATGGTGCCCGAGGCTCT
*
81023079 CGCACGAT-CAAG-GCTTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
* *
81023142 TTCCGATGGTGCCCGAGGCTCC
66 TGCCGATGGTGCCCGAGGCTCT
* * *
81023164 CGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTAGG-
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
*
81023226 TGCCAATGGT-CCCGAGGCTCT
66 TGCCGATGGTGCCCGAGGCTCT
* * *
81023247 CGCACGA-CCAAGGGCCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGT
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
*
81023311 TGCCGATGGTGCCCAAGGCTACT
66 TGCCGATGGTGCCCGAGGCT-CT
* *
81023334 -GCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACC-GAGGGCCTAGG
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAG-GGGCCTAGG
*
81023395 -TGCCGATGGTCCCCGAGGCTCT
65 TTGCCGATGGTGCCCGAGGCTCT
* * * ** *
81023417 CGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGG-
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
* * *
81023480 TGCCGATGGTGGCTGAGGCTCC
66 TGCCGATGGTGCCCGAGGCTCT
* *
81023502 CGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCCGAGGCTCCCTCACGACCAGGGGCCTAGGT
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
81023566 T-CCGATGGTGCCCGAGGCTCT
66 TGCCGATGGTGCCCGAGGCTCT
* * ** *
81023587 CGCACGA-CCAAGGGCCTAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGACCAGGGGCCTAGGT
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
*
81023650 TGCCGATGGTGCCGGAGGCTCT
66 TGCCGATGGTGCCCGAGGCTCT
* * * * ** *
81023672 CGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACAAACGTCCTAGGT
1 CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
* * *
81023735 TGCCGATGGCGTCCAAGGCTC-
66 TGCCGATGGTGCCCGAGGCTCT
81023756 CAGCACG-TCCAAG
1 C-GCACGATCCAAG
81023769 TAGCAATGTG
Statistics
Matches: 801, Mismatches: 113, Indels: 62
0.82 0.12 0.06
Matches are distributed among these distances:
83 34 0.04
84 209 0.26
85 465 0.58
86 90 0.11
87 3 0.00
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.16
Consensus pattern (87 bp):
CGCACGATCCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
TGCCGATGGTGCCCGAGGCTCT
Found at i:81023784 original size:127 final size:129
Alignment explanation
Indices: 81022753--81023768 Score: 1029
Period size: 127 Copynumber: 8.0 Consensus size: 129
81022743 CATCCAACGT
* * ** * * * * *
81022753 CCTAGCTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGTTTCTC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
** * * *
81022816 GAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTG-CTCGAGGCTCCCGCAC-ATCCAAG
65 GAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGTC-CGAGGCTCCCGCACGA-CCAAG
*
81022878 GAA
128 G-G
* *
81022881 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * * *
81022945 AGGCTCCCGCACGA-CCAAGGGTCGAGGTTGCCGATGGTGTTCGAAGCTTCCGCAC-ATCCAAGC
66 AGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGG
*
81023008 A
129 G
* * * *
81023009 CCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
81023072 AGGTTCTCGCACGAT-CAA-GGCTTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
66 AGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* *
81023135 CCTAGGTTTCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * *
81023198 GAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAAGGG
65 GAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * * *
81023261 CCTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCCGATGGTGCCCA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * ** * * *
81023326 AGGCTACTGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCGAGGG
66 AGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
81023389 CCTAGG-TGCCGATGGTCCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* ** * * * * *
81023453 AAGCTCCTACATGA-CCAGGGGCCTAGGTGCCGATGGTGGCTGAGGCTCCCGCACGACCAAGCG
66 AGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * *
81023516 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCTCACGACCAGGGGCCTAGGTT-CCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
* * * * *
81023580 AGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCTGATGGTAT-CGAGGCTCCCGCGCGACCAGGGG
66 AGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
* * ** * *
81023643 CCTAGGTTGCCGATGGTGCCGGAGGCTCTCGCAC-ATCCAAGCACCAAGG-TGCCGGTGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
* * * * * * *
81023706 GAGGCTCCCGCACGA-CAAACGTCCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
65 GAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGTCCGAGGCTCCCGCACGACCAAG
81023769 TAGCAATGTG
Statistics
Matches: 746, Mismatches: 120, Indels: 44
0.82 0.13 0.05
Matches are distributed among these distances:
126 109 0.15
127 425 0.57
128 183 0.25
129 29 0.04
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.16
Consensus pattern (129 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGGG
Found at i:81023989 original size:24 final size:24
Alignment explanation
Indices: 81023954--81024007 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
81023944 TTTTGATATT
*
81023954 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATAGCTCGCCGGAGCACCG
81023978 CCGGGATAGCTCGCCGGAGCACCG
1 CCGGGATAGCTCGCCGGAGCACCG
81024002 CCGGGA
1 CCGGGA
81024008 ACCTAACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.37, G:0.41, T:0.07
Consensus pattern (24 bp):
CCGGGATAGCTCGCCGGAGCACCG
Found at i:81024494 original size:58 final size:59
Alignment explanation
Indices: 81024403--81024523 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
81024393 GGGAGGGACA
* *
81024403 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* *
81024461 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
81024520 GGGA
1 GGGA
81024524 TTGGGGAGGG
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 51 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:81024609 original size:24 final size:24
Alignment explanation
Indices: 81024559--81024611 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
81024549 TTTGATATTT
* * *
81024559 CGGGATGGCTCGCCGGATCATCAC
1 CGGGATGGATCGCCGGAGCACCAC
* *
81024583 CGGGATGGATCGTCGGAGCACCGC
1 CGGGATGGATCGCCGGAGCACCAC
81024607 CGGGA
1 CGGGA
81024612 ACCTAACCGG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.40, T:0.13
Consensus pattern (24 bp):
CGGGATGGATCGCCGGAGCACCAC
Done.