Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 252 of 295
Found at i:81025219 original size:5 final size:5
Alignment explanation
Indices: 81025187--81025217 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
81025177 TACAAGAAGT
*
81025187 ATGGC ATGGC ATGGC ATGGC ATGGC ACGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
81025218 CGACACGGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.39, T:0.16
Consensus pattern (5 bp):
ATGGC
Found at i:81028722 original size:43 final size:42
Alignment explanation
Indices: 81028555--81029493 Score: 669
Period size: 42 Copynumber: 22.2 Consensus size: 42
81028545 GCTCAAGCCA
* * * * * * *
81028555 CCCGCACATCCAACGTCCTAGCTTGCCGATAGTGTCTGAGGCT
1 CCCGCACATCCAAGGACCAAG-GTGCCGATGGTGCCCGAGGCT
* * * * *
81028598 CCCGCACATCCAAGCACCAAGGTGCCAATGCTTCTCGAGGCT
1 CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * *
81028640 CCCGCACATCCAAGCACCAAGGCGCCAATGCTGCTCGAGGCAT
1 CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGC-T
* *
81028683 -CTGCACATCCAAGGCACCAAGGTGCCGGTGGTGCCCGAGGCT
1 CCCGCACATCCAAGG-ACCAAGGTGCCGATGGTGCCCGAGGCT
* **
81028725 CCCGCACGA-CCAAGGGCTGAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * ** *
81028768 CCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGAGTTCGAGGAT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
81028811 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTT
1 CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
81028853 CTCGCACGAT-CAAGG-CCTAGGTTGCCGATGGTGGCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
81028895 CCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
81028938 CCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * **
81028980 CCCGCACGA-CCAGGGGCCTAGGTGCCAATGGT-ATCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * *
81029021 CTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * * *
81029064 CCCGCACGA-CCAGGGGCCTAGGTTACCGATGGTGCCCAAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
*
81029107 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* *
81029149 CCCGCACGA-CCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * * * *
81029190 CTCGCACGA-CCAAGGGCCTAGGTTACCGATGATGGCCGAAGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * * * *
81029233 -CC-TACATGACCAGGGGCCTAGGTGCCGATGGTGGCTGAGGCT
1 CCCGCACAT--CCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * * *
81029275 CCCGCACGA-CCAAGAATCTAGGTTGCCGATGGTGGCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * * * *
81029318 CCCGCACGA-CCAGGGGCCTAGATTCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
* * * * **
81029360 CTCGCACGA-CCAAGGGCCTAGGTTGCTGATGGT-ATCGAGGCT
1 CCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
81029402 CCCGCGCGA-CCAGAGG-CCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCA-AGGACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
81029445 CTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCT
1 CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
81029487 CCCGCAC
1 CCCGCAC
81029494 GACAAACGTC
Statistics
Matches: 753, Mismatches: 113, Indels: 61
0.81 0.12 0.07
Matches are distributed among these distances:
40 1 0.00
41 64 0.08
42 361 0.48
43 323 0.43
44 3 0.00
45 1 0.00
ACGTcount: A:0.19, C:0.34, G:0.32, T:0.15
Consensus pattern (42 bp):
CCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:81028738 original size:85 final size:85
Alignment explanation
Indices: 81028571--81029559 Score: 895
Period size: 85 Copynumber: 11.7 Consensus size: 85
81028561 CATCCAACGT
* * * * * * * * *
81028571 CCTAGCTTGCCGATAGTGTCTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTTCTCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGA
**
81028636 GGCTCCCGCAC-ATCCAAGCA
66 GGCTCCCGCACGA-CCAAGGG
* * * * * * *
81028656 CCAAGG-CGCCAATGCTGCTCGAGGCAT-CTGCACATCCAAGGCACCAAGGTGCCGGTGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGC-TCCCGCACATCCAAGG-ACCAAGGTGCCGATGGTGCCC
81028719 GAGGCTCCCGCACGACCAAGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * **
81028741 -CTGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGAGTT
1 CCT-AGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCC
* **
81028804 CGAGGATCCCGCAC-ATCCAAGCA
63 CGAGGCTCCCGCACGA-CCAAGGG
* * * * *
81028827 CCAAGG-TGCCGATGGTGCCCGAGGTTCTCGCACGAT-CAAGG-CCTAGGTTGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCC
*
81028889 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * *
81028911 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGA
*
81028976 GGCTCCCGCACGACCAGGGG
66 GGCTCCCGCACGACCAAGGG
* ** * * *
81028996 CCTAGG-TGCCAATGGT-ATCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCC
*
81029058 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * *
81029080 CCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGA
81029145 GGCTCCCGCACGACCAAGGG
66 GGCTCCCGCACGACCAAGGG
* * * * * *
81029165 CCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTACCGATGATGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCC
* ** * *
81029227 GAAGCTCCTACATGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * * *
81029249 CCTAGG-TGCCGATGGTGGCTGAGGCTCCCGCACGA-CCAAGAATCTAGGTTGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCC
*
81029312 GAGGCTCCCGCACGACCAGGGG
64 GAGGCTCCCGCACGACCAAGGG
* * * * * **
81029334 CCTAGATT-CCGATGGTGCCCGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCTGATGGT-ATC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAGG-TGCCGATGGTGCCC
*
81029396 GAGGCTCCCGCGCGACC-AGAGG
64 GAGGCTCCCGCACGACCAAG-GG
* * *
81029418 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGA
* * *
81029483 GGCTCCCGCACGACAAACGT
66 GGCTCCCGCACGACCAAGGG
* * * * * * * *
81029503 CCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAGCAGCAATGTGCCGATG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGCCGATG
81029560 CTCCCGCACC
Statistics
Matches: 754, Mismatches: 121, Indels: 58
0.81 0.13 0.06
Matches are distributed among these distances:
83 51 0.07
84 205 0.27
85 409 0.54
86 87 0.12
87 2 0.00
ACGTcount: A:0.19, C:0.33, G:0.32, T:0.15
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGG
Found at i:81028912 original size:127 final size:127
Alignment explanation
Indices: 81028685--81029543 Score: 941
Period size: 127 Copynumber: 6.7 Consensus size: 127
81028675 CGAGGCATCT
* * * *
81028685 GCACATCCAAGGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGGCTGAGGTTG
1 GCACATCCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCT-AGGTTG
* * * ** *
81028750 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGAGTTCGAGGATCCC
64 CCGATGGTGACCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
** * * * *
81028814 GCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGGCCTAGGTTGCC
1 GCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCC
* *
81028879 GATGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
66 GATGGTGACCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* *
81028941 GCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGGCCTAGG-TGC
1 GCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTTGC
* * *
81029005 CAATGGT-ATCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
65 CGATGGTGACCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * * *
81029067 GCACGA-CCAGGGGCCTAGGTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 GCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG-GCCTAGGT
* *
81029129 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCT
62 TGCCGATGGTGACCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
81029192 C
127 C
* * * * ** * *
81029193 GCACGA-CCAAGGGCCTAGGTTACCGATGATGGCCGAAGCTCCTACATGACCAGGGGCCTAGG-T
1 GCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCA-AGGCCTAGGTT
* * *** *
81029256 GCCGATGGTGGCTGAGGCTCCCGCACGACCAAGAATCTAGGTTGCCGATGGTGGCCGAGGCTCCC
63 GCCGATGGTGACCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
* * * *
81029321 GCACGA-CCAGGGGCCTAGATTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTG
1 GCAC-ATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTG
* * * *
81029385 CTGATGGT-ATCGAGGCTCCCGCGCGACC-AGAGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTC
64 CCGATGGTGACCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
** * * * *
81029448 GCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCACGACAAACGTCCTAGGTTGC
1 GCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGC
* * * * *
81029513 CGATGGCGTCCAAGGCTCCAGCACGTCCAAG
65 CGATGGTGACCGAGGCTCCCGCACGACCAAG
81029544 CAGCAATGTG
Statistics
Matches: 618, Mismatches: 96, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
126 167 0.27
127 312 0.50
128 126 0.20
129 13 0.02
ACGTcount: A:0.19, C:0.33, G:0.34, T:0.15
Consensus pattern (127 bp):
GCACATCCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCC
GATGGTGACCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
Found at i:81029070 original size:169 final size:170
Alignment explanation
Indices: 81028571--81029518 Score: 1094
Period size: 169 Copynumber: 5.6 Consensus size: 170
81028561 CATCCAACGT
* * * * * * * *
81028571 CCTAGCTTGCCGATAGTGTCTGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTTCTCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
** * * * * *
81028636 GGCTCCCGCAC-ATCCAAGCACCAAGGCGCCAATGCTGCTCGAGGCATCT-GCAC-ATCCAAGGC
66 GGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC-TCTCGCACGA-CCAAGG-
* * * *
81028698 ACCAAGG-TGCCGGTGGTGCCCGAGGCTCCCGCACGACCAAGGG
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
** * * **
81028741 -CTGAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGAGTT
1 CCT-AGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
* ** * * *
81028804 CGAGGATCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
63 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
*
81028867 GCCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGACCAGGGG
127 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
** * *
81028911 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * **
81028976 GGCTCCCGCACGACCAGGGGCCTAGGTGCCAATGGT-ATCGAGGCTCTCGCACGACCAAGGGCCT
66 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
81029040 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
131 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
81029080 CCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
81029145 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAAGGGCCT
66 GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
* * * * ** *
81029209 AGGTTACCGATGATGGCCGAAGCTCCTACATGACCAGGGG
131 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * * * *
81029249 CCTAGG-TGCCGATGGTGGCTGAGGCTCCCGCACGA-CCAAGAATCTAGGTTGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* * *
81029312 GAGGCTCCCGCACGACCAGGGGCCTAGATTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
64 GAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
* ** * *
81029377 CTAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGACCAGAGG
129 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
81029418 CCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * *
81029483 GGCTCCCGCACGACAAACGTCCTAGGTTGCCGATGG
66 GGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGG
81029519 CGTCCAAGGC
Statistics
Matches: 670, Mismatches: 92, Indels: 32
0.84 0.12 0.04
Matches are distributed among these distances:
168 51 0.08
169 359 0.54
170 199 0.30
171 60 0.09
172 1 0.00
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (170 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
Found at i:81029761 original size:24 final size:24
Alignment explanation
Indices: 81029729--81029782 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
81029719 TTTCGATATT
*
81029729 CCGGGATGGCTCGCCGGAGCACCG
1 CCGGGATGGCTCACCGGAGCACCG
*
81029753 CCGGGATGGCTCACTGGAGCACCG
1 CCGGGATGGCTCACCGGAGCACCG
81029777 CCGGGA
1 CCGGGA
81029783 ACCTAACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.15, C:0.35, G:0.41, T:0.09
Consensus pattern (24 bp):
CCGGGATGGCTCACCGGAGCACCG
Found at i:81030269 original size:58 final size:59
Alignment explanation
Indices: 81030178--81030298 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
81030168 GGGAGGGACA
* *
81030178 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATCCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
* * *
81030236 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
81030295 GGGA
1 GGGA
81030299 TTGGGAAGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTTT
Found at i:81030384 original size:24 final size:24
Alignment explanation
Indices: 81030333--81030386 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
81030323 TTTCGATATT
* * *
81030333 CCGGGATGGCTCGTCGGATCATCG
1 CCGGGATGGATCGTCGGAGCATCA
81030357 CCGGGATGGATCGTCGGAGCA-CTA
1 CCGGGATGGATCGTCGGAGCATC-A
81030381 CCGGGA
1 CCGGGA
81030387 ACCTAACCGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.17, C:0.28, G:0.39, T:0.17
Consensus pattern (24 bp):
CCGGGATGGATCGTCGGAGCATCA
Found at i:81030974 original size:10 final size:10
Alignment explanation
Indices: 81030961--81030994 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
81030951 CAAGAAGTAT
*
81030961 GGCATGGCAT
1 GGCATGGCAC
81030971 GGCATGGCAC
1 GGCATGGCAC
*
81030981 GGCACGGCAC
1 GGCATGGCAC
81030991 GGCA
1 GGCA
81030995 GAAAATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.21, C:0.29, G:0.41, T:0.09
Consensus pattern (10 bp):
GGCATGGCAC
Found at i:81038296 original size:40 final size:41
Alignment explanation
Indices: 81038174--81038541 Score: 210
Period size: 40 Copynumber: 9.2 Consensus size: 41
81038164 TTTTCTTTAG
* *
81038174 CCCGCACATCCGAG--CCACAGGTGCCCCTGCTGCTCGAGGC-
1 CCCGCACATCCAAGCACCA-AGGTG-CCATGCTGCTCGAGGCT
*
81038214 CCCGCACATCCAA-CACC-A--TGCCATGGTG-TCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCATGCTGCT-CGAGGCT
81038251 CCCGCACATCCAAGCACCAAGGTGCCATGCT-CTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCATGCTGCTCGAGGCT
*
81038291 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGC-CGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCC-ATGCTGCTCGAGGCT
* *
81038332 CCCGCACA-CCAAG-GCC-AGGTGCCGATGGTGC-CGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCC-ATGCTGCTCGAGGCT
** *
81038370 -CCGCACGA-CCAAGGGCC-AGGTTGCCGATGGTGC-CGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCC-ATGCTGCTCGAGGCT
* * * *
81038410 CCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCC-ATGCTGCTCGAGGCT
* * * *
81038452 --CGCACGAT-CAAG-GCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCC-ATGCTGCTCGAGGCT
** * * *
81038492 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCC-ATGCTGCTCGAGGCT
81038535 CCCGCAC
1 CCCGCAC
81038542 GACCAAGGGC
Statistics
Matches: 300, Mismatches: 6, Indels: 41
0.86 0.02 0.12
Matches are distributed among these distances:
35 1 0.00
36 12 0.04
37 21 0.07
38 32 0.11
39 10 0.03
40 111 0.37
41 59 0.20
42 19 0.06
43 35 0.12
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.14
Consensus pattern (41 bp):
CCCGCACATCCAAGCACCAAGGTGCCATGCTGCTCGAGGCT
Found at i:81038301 original size:77 final size:80
Alignment explanation
Indices: 81038174--81038582 Score: 273
Period size: 81 Copynumber: 5.1 Consensus size: 80
81038164 TTTTCTTTAG
* *
81038174 CCCGCACATCCGAGCCACAGGTGCCCCTGCTGCTCGAGGCCCCGCACATCCAA-CACC-A-TGCC
1 CCCGCACATCCAAGCCACAGGTGCCCATGCTGCTCGAGGCCCCGCACATCCAAGCACCAAGTGCC
81038236 -ATGGTGTCCGAGGCT
66 GATGGTG-CCGAGGCT
81038251 CCCGCACATCCAAG-CACCAAGGTG-CCATGCT-CTCGAGGCTCCCGCACATCCAAGCACCAAGG
1 CCCGCACATCCAAGCCA-C-AGGTGCCCATGCTGCTCGAGGC-CCCGCACATCCAAGCACCAA-G
81038313 TGCCGATGGTGCCGAGGCT
62 TGCCGATGGTGCCGAGGCT
* * * * ** *
81038332 CCCGCACA-CCAAGGC-CAGGTGCCGATGGTGC-CGAGGCTCCGCACGA-CCAAGGGCCAGGTTG
1 CCCGCACATCCAAGCCACAGGTGCCCATGCTGCTCGAGGCCCCGCAC-ATCCAAGCACCAAG-TG
81038393 CCGATGGTGCCGAGGCT
64 CCGATGGTGCCGAGGCT
* * * * * * *
81038410 CCCGCACGA-CCAAGGCC-TAGGTTGCCGATGGTGCCCGAGG-CTCGCACGAT-CAAGGC-CTAG
1 CCCGCAC-ATCCAA-GCCACAGG-TGCCCATGCTGCTCGAGGCCCCGCAC-ATCCAA-GCACCAA
81038470 GTTGCCGATGGTGCCCGAGGCT
61 G-TGCCGATGGTG-CCGAGGCT
* * * * **
81038492 CCCGCACGA-CCAAGGGCC-TAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT
1 CCCGCAC-ATCCAA--GCCACAGG-TGCCCATGCTGCTCGAGGC-CCCGCAC-ATCCAAGCACC-
*
81038554 AGGTTGCCGATGGTGCCGAGGCT
59 AAG-TGCCGATGGTGCCGAGGCT
81038577 -CCGCAC
1 CCCGCAC
81038583 GACCAAGGCC
Statistics
Matches: 289, Mismatches: 17, Indels: 45
0.82 0.05 0.13
Matches are distributed among these distances:
76 10 0.03
77 34 0.12
78 54 0.19
79 19 0.07
80 11 0.04
81 59 0.20
82 33 0.11
83 27 0.09
84 7 0.02
85 20 0.07
86 15 0.05
ACGTcount: A:0.18, C:0.37, G:0.31, T:0.14
Consensus pattern (80 bp):
CCCGCACATCCAAGCCACAGGTGCCCATGCTGCTCGAGGCCCCGCACATCCAAGCACCAAGTGCC
GATGGTGCCGAGGCT
Found at i:81038432 original size:41 final size:41
Alignment explanation
Indices: 81038232--81039068 Score: 896
Period size: 40 Copynumber: 20.8 Consensus size: 41
81038222 TCCAACACCA
* *
81038232 TGCC-ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAG-GCCTAGGT
* * *
81038273 TGCC-ATGCT-CTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGC-CGAGGCTCCCGCACGA-CCAAG-GCCTAGGT
81038313 TGCCGATGGTGCCGAGGCTCCCGCAC-ACCAAGGCC-AGG-
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
81038351 TGCCGATGGTGCCGAGGCT-CCGCACGACCAAGGGCC-AGGT
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAA-GGCCTAGGT
81038391 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
*
81038432 TGCCGATGGTGCCCGAGGCT--CGCACGATCAAGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAAGGCCTAGGT
81038472 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGT
81038515 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGT
81038558 TGCCGATGGTGCCGAGGCT-CCGCACGACCAAGGCCTAGG-
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
*
81038597 T---G--GGTGCCGAGGCTCCCGCACGACCAGGGCCTAGG-
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
81038632 TGCCGATGGTGCC-AGGCTCCCGCAC-ACC-A-GCC-AGG-
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
81038667 TG-CGATGGTGCCGAGGCT-CCGCACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAA-GGCCTAGGT
*
81038706 TGCCGATGGTGCCCGA-GCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGT
** * *
81038748 TGCCGATGGTGGCCGA-GCTCCTACATGACCAGGGGCCTAGG-
1 TGCCGATGGT-GCCGAGGCTCCCGCACGACCA-AGGCCTAGGT
81038789 TGCCGATGGTGGCCGAGGCT-CCGCA-GACCAAGGCCTAGGT
1 TGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGCCTAGGT
*
81038829 TGCCGATGGTGGCCGAGGCTCCCGCACGACC-AGGGCTAGGT
1 TGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGCCTAGGT
*
81038870 T-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGT
** *
81038912 TGCC-ATGGTATCGAGGCTCCCGCACGACCAGGGCCTAGGT
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
* *
81038952 T-CCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCC-GAGGCTCCCGCACGA-CCAAG-GCCTAGGT
* * *
81038993 -GCCGGTGGTGCCCGAGGCTCCCGCACGACAAACGTCCTAGGT
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGT
* * * *
81039035 TGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
81039069 CAGCAATGTG
Statistics
Matches: 709, Mismatches: 39, Indels: 95
0.84 0.05 0.11
Matches are distributed among these distances:
34 28 0.04
35 33 0.05
36 5 0.01
37 6 0.01
38 34 0.05
39 39 0.06
40 193 0.27
41 189 0.27
42 91 0.13
43 91 0.13
ACGTcount: A:0.18, C:0.34, G:0.34, T:0.14
Consensus pattern (41 bp):
TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGT
Found at i:81038504 original size:82 final size:81
Alignment explanation
Indices: 81038232--81039068 Score: 863
Period size: 82 Copynumber: 10.4 Consensus size: 81
81038222 TCCAACACCA
* * *
81038232 TGCC-ATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCC-ATGCT-CTCGAGGCTC
1 TGCCGATGGTG-CCGAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTGC-CGAGGCT-
* *
81038292 CCGCAC-ATCCAAGCACCAAGG-
61 CCGCACGA-CCAAG-GCCTAGGT
81038313 TGCCGATGGTGCCGAGGCTCCCGCAC-ACCAAGGCC-AGG-TGCCGATGGTGCCGAGGCTCCGCA
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCGCA
81038375 CGACCAAGGGCC-AGGT
66 CGACCAA-GGCCTAGGT
81038391 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CGC
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTG-CCGAGGCTCCGC
*
81038455 ACGATCAAGGCCTAGGT
65 ACGACCAAGGCCTAGGT
81038472 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTG-CCGAGGCT-C
81038537 CGCACGACCAAGGGCCTAGGT
62 CGCACGACCAA-GGCCTAGGT
81038558 TGCCGATGGTGCCGAGGCT-CCGCACGACCAAGGCCTAGG-T---G--GGTGCCGAGGCTCCCGC
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCT-CCGC
*
81038616 ACGACCAGGGCCTAGG-
65 ACGACCAAGGCCTAGGT
81038632 TGCCGATGGTGCC-AGGCTCCCGCAC-ACC-A-GCC-AGG-TG-CGATGGTGCCGAGGCTCCGCA
1 TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCGCA
81038690 CGACCAAGGGCCTAGG-
66 CGACCAA-GGCCTAGGT
*
81038706 TGCCGATGGTGCCCGA-GCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGGCCGA-GCTCC
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGT-GCCGAGGCTCC
* * *
81038769 TACATGACCAGGGGCCTAGG-
63 -GCACGACCA-AGGCCTAGGT
81038789 TGCCGATGGTGGCCGAGGCT-CCGCA-GACCAAGGCCTAGGTTGCCGATGGTGGCCGAGGCTCCC
1 TGCCGATGGT-GCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGT-GCCGAGGCT-CC
*
81038852 GCACGACC-AGGGCTAGGT
63 GCACGACCAAGGCCTAGGT
* **
81038870 T-CCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCC-ATGGTATCGAGGCTCCC
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCCGAGGCT-CC
*
81038933 GCACGACCAGGGCCTAGGT
63 GCACGACCAAGGCCTAGGT
* * *
81038952 T-CCGATGGTGCCTGAGGCTCCCGCAC-ATCCAAGCACCAAGG--GCCGGTGGTGCCCGAGGCTC
1 TGCCGATGGTGCC-GAGGCTCCCGCACGA-CCAAG-GCCTAGGTTGCCGATGGTG-CCGAGGCT-
* *
81039013 CCGCACGACAAACGTCCTAGGT
61 CCGCACGACCAA-GGCCTAGGT
* * * *
81039035 TGCCGATGGCGTCCAAGGCTCCAGCACGTCCAAG
1 TGCCGATGGTG-CCGAGGCTCCCGCACGACCAAG
81039069 CAGCAATGTG
Statistics
Matches: 669, Mismatches: 34, Indels: 103
0.83 0.04 0.13
Matches are distributed among these distances:
70 4 0.01
71 3 0.00
72 2 0.00
73 19 0.03
74 50 0.07
75 19 0.03
76 24 0.04
77 8 0.01
78 45 0.07
79 29 0.04
80 42 0.06
81 114 0.17
82 131 0.20
83 99 0.15
84 40 0.06
85 20 0.03
86 20 0.03
ACGTcount: A:0.18, C:0.34, G:0.34, T:0.14
Consensus pattern (81 bp):
TGCCGATGGTGCCGAGGCTCCCGCACGACCAAGGCCTAGGTTGCCGATGGTGCCGAGGCTCCGCA
CGACCAAGGCCTAGGT
Found at i:81039773 original size:58 final size:59
Alignment explanation
Indices: 81039676--81039797 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 59
81039666 GGGAGAGACA
* * * *
81039676 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCTGAA-TCCTACC-TTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCC-ACCTTTT
*
81039734 GGGATGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCCACCTTTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCCACCTTTT
81039793 GGGAT
1 GGGAT
81039798 CTGGGAGGGA
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
58 46 0.81
59 11 0.19
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCCACCTTTT
Found at i:81045009 original size:27 final size:27
Alignment explanation
Indices: 81044979--81045156 Score: 207
Period size: 27 Copynumber: 6.6 Consensus size: 27
81044969 ATATTGAGTC
* * * *
81044979 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
81045006 CGCACACTTAGTGCTACGA-AATCAAAT
1 CGCACACTTAGTGCTAC-ATAGTCAAAT
81045033 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
* * *
81045061 CGCACACTTAGTGCTGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
81045088 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
81045115 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
81045142 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
81045157 GTACAATTTA
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:81047840 original size:24 final size:24
Alignment explanation
Indices: 81047813--81047885 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
81047803 CCGATGGTGC
81047813 CCGAGGCTCCCGCACGACCAAGGG
1 CCGAGGCTCCCGCACGACCAAGGG
* *
81047837 CCGAGGAT---GC-CG---ATGGTG
1 CCGAGGCTCCCGCACGACCAAGG-G
81047855 CCCGAGGCTCCCGCACGACCAAGGG
1 -CCGAGGCTCCCGCACGACCAAGGG
81047880 CCGAGG
1 CCGAGG
81047886 TTGCCGATGG
Statistics
Matches: 36, Mismatches: 4, Indels: 18
0.62 0.07 0.31
Matches are distributed among these distances:
17 3 0.08
18 1 0.03
19 7 0.19
20 2 0.06
21 2 0.06
22 2 0.06
23 2 0.06
24 13 0.36
25 1 0.03
26 3 0.08
ACGTcount: A:0.19, C:0.37, G:0.37, T:0.07
Consensus pattern (24 bp):
CCGAGGCTCCCGCACGACCAAGGG
Found at i:81047970 original size:23 final size:23
Alignment explanation
Indices: 81047944--81048013 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
81047934 ATGGTGCCCG
81047944 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
81047967 AGG-T-T-GC-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
81047986 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
81048009 AGGTT
1 AGGTT
81048014 GCCGATGGTG
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 10 0.30
20 3 0.09
21 2 0.06
22 3 0.09
23 15 0.45
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.23
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:81048066 original size:169 final size:169
Alignment explanation
Indices: 81047709--81048657 Score: 1244
Period size: 169 Copynumber: 5.6 Consensus size: 169
81047699 CATCCAATGT
* * * *
81047709 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCTCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* *
81047774 GGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC
66 GGCTCCCGCACGA-CCAAGG--CCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
* * *
81047838 CGAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
128 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* ** *
81047880 CCGAGGTTGCCGATGGTGTTCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * * * *
81047945 GGTTCTCGCACGATCAAGGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCT
66 GGCTCCCGCACGACCAAGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
81048009 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
130 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* ** * *
81048049 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGGCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * *
81048114 GGCTCCCGCACGAACAAGGGCCTAGGTGCCAATGGT-CCCGAGGCTCTCGCACGACCAATGGCCT
66 GGCTCCCGCACGACCAA-GGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
81048178 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
130 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * *
81048218 TCTAGGTTACCGATGGTGCCCAAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTACCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
*
81048283 GGCTCCCGCACGACCGAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
66 GGCTCCCGCACGACC-AAGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCT
* * * * ** *
81048348 AGGTTGCCGGTGGCGGCCGAAGCTCCTACATGACCAGGGG
130 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* * * * *
81048388 CCTAGG-TACCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGCGCCTAGGTTGCCGATGGTGGCC
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCC
* * * * *
81048451 GAGGCTCCCGCACGACCAGGGGCCTATGTTCCGATGGTGCCCGAGGCTCTCACACGACCAAGGTC
64 GAGGCTCCCGCACGACCA-AGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGC
* ** *
81048516 CTAGGTTGCTGATGGT-ATCGAGGCTCCCGCGCGACCAGGGG
128 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
* *
81048557 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGAACCAAGGTGCCGGTGGTGCCCGA
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
* * *
81048622 GGCTACCGCACGACAAACGTCCTAGGTTGCCGATGG
66 GGCTCCCGCACGACCAA-GGCCTAGG-TGCCGATGG
81048658 CGTCCAAGGT
Statistics
Matches: 681, Mismatches: 84, Indels: 27
0.86 0.11 0.03
Matches are distributed among these distances:
168 20 0.03
169 355 0.52
170 232 0.34
171 73 0.11
172 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.15
Consensus pattern (169 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAAGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTA
GGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGG
Found at i:81048310 original size:42 final size:43
Alignment explanation
Indices: 81047686--81048657 Score: 1059
Period size: 42 Copynumber: 22.9 Consensus size: 43
81047676 CCCTGCTGCT
* * * *
81047686 CGAGGCACCCGCAC-ATCCAATGTCCTAGGTTGCCGATGGTGTC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
81047729 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81047771 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCC
* *
81047814 CGAGGCTCCCGCACGACCAAGGGCCGAGGATGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* **
81047857 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** *
81047900 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
81047942 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
81047984 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81048026 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
*
81048069 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81048111 CGAGGCTCCCGCACGAACAAGGGCCTAGG-TGCCAATGGT-CC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81048152 CGAGGCTCTCGCACGACCAATGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
81048195 CGAGGCTCCCGCACGACCAGGGGTCTAGGTTACCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * *
81048238 CAAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTACC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
*
81048280 CGAGGCTCCCGCACGACCGAGGGCCTAGG-TGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
81048322 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGGTGGCGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * * *
81048365 CGAAGCTCCTACATGACCAGGGGCCTAGG-TACCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81048407 CGAGGCTCCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81048450 CGAGGCTCCCGCACGACCAGGGGCCTATGTT-CCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * **
81048492 CGAGGCTCTCACACGACCAAGGTCCTAGGTTGCTGATGGT-AT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
81048534 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * *
81048577 CGAGGCTCCCGCAC-ATCCAAGAACCAAGG-TGCCGGTGGTGCC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
81048619 CGAGGCTACCGCACGACAAACGTCCTAGGTTGCCGATGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGG
81048658 CGTCCAAGGT
Statistics
Matches: 792, Mismatches: 117, Indels: 40
0.83 0.12 0.04
Matches are distributed among these distances:
41 32 0.04
42 400 0.51
43 359 0.45
44 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.15
Consensus pattern (43 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:81048356 original size:85 final size:85
Alignment explanation
Indices: 81047709--81048657 Score: 1039
Period size: 85 Copynumber: 11.2 Consensus size: 85
81047699 CATCCAATGT
* ** * * * *
81047709 CCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
**
81047773 AGGCTCCCGCAC-ATCCAAGGCA
65 AGGCTCCCGCACGA-CC-AGGGG
* *
81047795 CCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGATGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
*
81047859 AGGCTCCCGCACGACCAAGGG
65 AGGCTCCCGCACGACCAGGGG
* ** * ** *
81047880 CCGAGGTTGCCGATGGTGTTCAAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
* * * *
81047944 AGGTTCTCGCACGATCA-AGG
65 AGGCTCCCGCACGACCAGGGG
* * *
81047964 CCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
81048028 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAGGGG
* *
81048049 CCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
* *
81048113 AGGCTCCCGCACGAACAAGGG
65 AGGCTCCCGCACGACCAGGGG
* * *
81048134 CCTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAATGGCCTAGGTTGCCGATGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
81048197 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAGGGG
* * * ** * *
81048218 TCTAGGTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTACCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
81048282 AGGCTCCCGCACGACC-GAGGG
65 AGGCTCCCGCACGACCAG-GGG
* * * *
81048303 CCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGGTGGCGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
* ** *
81048367 AAGCTCCTACATGACCAGGGG
65 AGGCTCCCGCACGACCAGGGG
* * * *
81048388 CCTAGG-TACCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGCCTAGGTTGCCGATGGTGGCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
81048452 AGGCTCCCGCACGACCAGGGG
65 AGGCTCCCGCACGACCAGGGG
* * * * * **
81048473 CCTATGTT-CCGATGGTGCCCGAGGCTCTCACACGACCAAGGTCCTAGGTTGCTGATGGT-ATCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCG
*
81048536 AGGCTCCCGCGCGACCAGGGG
65 AGGCTCCCGCACGACCAGGGG
** * *
81048557 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGAACCAAGGTGCCGGTGGTGCCCG
1 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCG
* * ** *
81048621 AGGCTACCGCACGACAAACGT
65 AGGCTCCCGCACGACCAGGGG
81048642 CCTAGGTTGCCGATGG
1 CCTAGGTTGCCGATGG
81048658 CGTCCAAGGT
Statistics
Matches: 729, Mismatches: 111, Indels: 47
0.82 0.13 0.05
Matches are distributed among these distances:
83 31 0.04
84 184 0.25
85 414 0.57
86 99 0.14
87 1 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.15
Consensus pattern (85 bp):
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGA
GGCTCCCGCACGACCAGGGG
Found at i:81048698 original size:127 final size:130
Alignment explanation
Indices: 81047686--81048686 Score: 1002
Period size: 127 Copynumber: 7.9 Consensus size: 130
81047676 CCCTGCTGCT
* * * *
81047686 CGAGGCACCCGCAC-ATCCAATGTCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * *
81047749 GCACCAAGG-TGCCAATGCTG-CTCGAGGCTCCCGCAC-ATCCAAGGCA-CCAAGG-TGCCGATG
64 GGGCCTAGGTTGCCGATGGTGTC-CGAGGCTCCCGCACGA-CCAA-GCAGCCTAGGTTGCCGATG
81047809 GTGCC
126 GTGCC
* *
81047814 CGAGGCTCCCGCACGACCAAGGGCCGAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
81047879 GCCGAGGTTGCCGATGGTGTTCAAGGCTCCCGCAC-ATCCAAGCA-CCAAGG-TGCCGATGGTGC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGA-CCAAGCAGCCTAGGTTGCCGATGGTGC
81047941 C
130 C
* * * * * *
81047942 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* ** *
81048005 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGGCCTAGGTTGCCGATGGTGGC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGCAGCCTAGGTTGCCGATGGTGCC
* *
81048069 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGAACAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * *
81048132 GGCCTAGG-TGCCAATGGT-CCCGAGGCTCTCGCACGACCAATG--GCCTAGGTTGCCGATGGTG
65 GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAA-GCAGCCTAGGTTGCCGATGGTG
81048193 CC
129 CC
* * * *
81048195 CGAGGCTCCCGCACGACCAGGGGTCTAGGTTACCGATGGTGCCCAAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * ** * *
81048259 CACCAAGG-TGCCGATGGTACCCGAGGCTCCCGCACGACCGAG-GGCCTAGG-TGCCGATGGTGC
65 GGCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGCAGCCTAGGTTGCCGATGGTGC
81048321 C
130 C
* * * * * ** * *
81048322 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGGTGGCGGCCGAAGCTCCTACATGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
81048387 GCCTAGG-TACCGATGGTGGCCGAGGCTCCCGCACGACCAAGC-GCCTAGGTTGCCGATGGTGGC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGCAGCCTAGGTTGCCGATGGTGCC
* * * *
81048450 CGAGGCTCCCGCACGACCAGGGGCCTATGTT-CCGATGGTGCCCGAGGCTCTCACACGACCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * **
81048514 TCCTAGGTTGCTGATGGTAT-CGAGGCTCCCGCGCGACC-AGGGGCCTAGGTTGCCGATGGTGCC
66 GCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGCAGCCTAGGTTGCCGATGGTGCC
** * * * * *
81048577 CGAGGCTCCCGCAC-ATCCAAGAACCAAGG-TGCCGGTGGTGCCCGAGGCTACCGCACGACAAAC
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* * * * *
81048640 GTCCTAGGTTGCCGATGGCGTCCAAGG-TACCAGCACGTCCAAGCAGC
65 GGCCTAGGTTGCCGATGGTGTCCGAGGCT-CCCGCACGACCAAGCAGC
81048687 AATGTGCCGA
Statistics
Matches: 735, Mismatches: 111, Indels: 53
0.82 0.12 0.06
Matches are distributed among these distances:
125 2 0.00
126 109 0.15
127 387 0.53
128 203 0.28
129 34 0.05
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.15
Consensus pattern (130 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
GCCTAGGTTGCCGATGGTGTCCGAGGCTCCCGCACGACCAAGCAGCCTAGGTTGCCGATGGTGCC
Found at i:81048903 original size:24 final size:24
Alignment explanation
Indices: 81048871--81048922 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
81048861 TCAATATTCT
** *
81048871 GGGATGGCTGGCCTGAGCACCGCC
1 GGGATGGCTCACCGGAGCACCGCC
*
81048895 GGGATGGCTCACCGGAGCACCGCT
1 GGGATGGCTCACCGGAGCACCGCC
81048919 GGGA
1 GGGA
81048923 ACCTAACCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.15, C:0.31, G:0.42, T:0.12
Consensus pattern (24 bp):
GGGATGGCTCACCGGAGCACCGCC
Found at i:81049409 original size:58 final size:58
Alignment explanation
Indices: 81049318--81049433 Score: 178
Period size: 58 Copynumber: 2.0 Consensus size: 58
81049308 GGGAGGGACA
* * *
81049318 GGGACAATTCATTCATTGTTGGGTACCGGACATGCAACTGTATCCGAATCCTACCTTT
1 GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
* * *
81049376 GGGACGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTT
1 GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
81049434 TGAGATTGGG
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (58 bp):
GGGACAATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATCCTACCTTT
Found at i:81057293 original size:43 final size:42
Alignment explanation
Indices: 81057223--81058081 Score: 671
Period size: 43 Copynumber: 20.2 Consensus size: 42
81057213 TCTTCTTTAG
*
81057223 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCT
1 CCCGCACAT-CCAAGCACCAAGGTGCCGAT-GGTGCCCGAGGCT
* *
81057267 CCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * *
81057309 CCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCT
*
81057352 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGCT
** * *
81057395 CCCGCACGA-CCAAGGGCCGAGGTGCCGATGGTGGCCGAGGC-
1 CCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
** *** *
81057436 CCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGGCT
* *** * *
81057479 CTCGCACGA-CCAAGGGTCTAGGTTGCCGATGGTGCCCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
81057522 CCGGCACATCCAAGCACCAAGGTGTCGATGGTGCACGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** * * *
81057564 CCCGCACGA-CAAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT
* * * *
81057607 CCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
** ***
81057649 CCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGGCT
** ** * *
81057692 CCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
1 CCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT
* ** * * * *
81057735 CTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGCGCGAGGTT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
81057778 CTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
** * ** *
81057820 CCCGCACGA-CCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* *
81057863 CCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGGCT
** *
81057905 CCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCT
1 CCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCT
* * *
81057948 CCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
* ** ** * * *
81057990 CCTGCA-ATACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCT
1 CCCGCACAT-CCAAGCACCAAG-GTGCCGATGGTGCCCGAGGCT
* * *
81058033 CCTGCACATCCTAGCACCAGGGTGCCGATGGTGCCCGAGGCT
1 CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
81058075 CCCGCAC
1 CCCGCAC
81058082 GACCAAGGGC
Statistics
Matches: 660, Mismatches: 130, Indels: 52
0.78 0.15 0.06
Matches are distributed among these distances:
41 20 0.03
42 250 0.38
43 378 0.57
44 12 0.02
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.16
Consensus pattern (42 bp):
CCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:81057419 original size:85 final size:84
Alignment explanation
Indices: 81057243--81058094 Score: 965
Period size: 85 Copynumber: 10.0 Consensus size: 84
81057233 CCAGGCACCA
* *
81057243 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
** * ** *
81057308 TCCCGCACCTCCTAGCCACCG
65 TCCCGCACGACCAAG-GGCCT
* *
81057329 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGC
*
81057394 TCCCGCACGACCAAGGGCCG
65 TCCCGCACGACCAAGGGCCT
* ** *** *
81057414 AGGTGCCGATGGTGGCCGAGGC-CCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGG
* *
81057477 CTCTCGCACGACCAAGGGTCT
64 CTCCCGCACGACCAAGGGCCT
* * * *
81057498 AGGTTGCCGATGGTGCCCGAGGTTCCGGCACATCCAAGCACCAAGGTGTCGATGGTGCACGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
*
81057563 TCCCGCACGACAAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
* * * * * *
81057583 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
81057648 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** ** ** *
81057668 ATTTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAG
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAG
* *
81057732 CCTCTCGCACGACCAAGGGCCT
63 GCTCCCGCACGACCAAGGGCCT
* * * * * *
81057754 AGGTTGTCGATGGTGCGCGAGGTTCTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
81057819 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * * *
81057839 AGGTTGCCGACAGTGTCCGAGGCTCCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGG
81057903 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * *
81057924 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
* ** *
81057989 TCCTGCAATACCAAGGGCTT
65 TCCCGCACGACCAAGGGCCT
* * * * * *
81058009 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAGGGTGCCGATGGTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
81058074 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
81058094 A
1 A
81058095 TGCTACCGGA
Statistics
Matches: 645, Mismatches: 106, Indels: 31
0.82 0.14 0.04
Matches are distributed among these distances:
83 2 0.00
84 52 0.08
85 463 0.72
86 128 0.20
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:81058175 original size:24 final size:24
Alignment explanation
Indices: 81058099--81058177 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
81058089 GGCCTATGCT
* *
81058099 ACCGGAACGGTTCACCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
81058123 GA-CGGGACGGTTCGCCGGAGCACC
1 -ACCGGGACGGTTCGCCGGAGCACC
* *
81058147 GCCGGGACGGATCGCCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
81058171 ACCGGGA
1 ACCGGGA
81058178 ACCTAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.35, G:0.38, T:0.06
Consensus pattern (24 bp):
ACCGGGACGGTTCGCCGGAGCACC
Found at i:81058469 original size:42 final size:42
Alignment explanation
Indices: 81058396--81058594 Score: 179
Period size: 42 Copynumber: 4.7 Consensus size: 42
81058386 TTGGTGCTGA
*
81058396 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTCTCCG
1 AGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTCTCCG
* ** * * * *
81058438 AGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGGTGGTGTCCG
1 AGGCTCCCGCACATCCAAGCACCAAG-GTGCCGATGGTCTCCG
* *
81058480 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCT-CG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT-CTCCG
* * ** *
81058522 AGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGGCTG
1 AGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTCTCCG
* *
81058565 AGGCTCCCACACATCCGAGCCACCAAGGTG
1 AGGCTCCCGCACATCCAAG-CACCAAGGTG
81058595 ATGGAGGCTC
Statistics
Matches: 123, Mismatches: 27, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
41 10 0.08
42 65 0.53
43 41 0.33
44 7 0.06
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.17
Consensus pattern (42 bp):
AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTCTCCG
Found at i:81078554 original size:155 final size:154
Alignment explanation
Indices: 81078318--81078609 Score: 469
Period size: 155 Copynumber: 1.9 Consensus size: 154
81078308 CGAAGAAACA
* * * *
81078318 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCATATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACATAACAGATCTGACCTTCATTGAA
81078383 GCAGATCAAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATATAGCAGATCT
66 GCAGATCAAAGATGATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGA-ATAGCAGATCT
81078448 GACCTTCATTGAAGCAGGTCCAAGAT
129 GACCTTCATTGAAGCAGGTCCAAGAT
** * *
81078474 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAAGACATAACAGAT-TGACCTTCATTGAA
1 GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACATAACAGATCTGACCTTCATTGAA
* *
81078538 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGACTAGCAGATCTGA
66 GCAGATCAAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGAATAGCAGATCTGA
81078603 CCTTCAT
131 CCTTCAT
81078610 GTGTTTACAT
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
153 19 0.15
154 16 0.13
155 49 0.39
156 42 0.33
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (154 bp):
GATTTGGCATCTCCATATTAGACGGAGAGCAGATCAAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCAAAGATGATTTGGCATCTCTGTATTAGACGGGAGCAGATCGAAGAATAGCAGATCTGA
CCTTCATTGAAGCAGGTCCAAGAT
Found at i:81078568 original size:77 final size:78
Alignment explanation
Indices: 81078318--81078609 Score: 464
Period size: 78 Copynumber: 3.8 Consensus size: 78
81078308 CGAAGAAACA
** * * *
81078318 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCATATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
81078383 GCAGATCAAAGAT
66 GCAGATCCAAGAT
*
81078396 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
*
81078461 GCAGGTCCAAGAT
66 GCAGATCCAAGAT
* * *
81078474 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCAAAGACATAACAGAT-TGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
81078538 GCAGATCCAAGAT
66 GCAGATCCAAGAT
81078551 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGAC-TAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
81078610 GTGTTTACAT
Statistics
Matches: 197, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
75 7 0.04
76 26 0.13
77 48 0.24
78 116 0.59
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:81078684 original size:45 final size:45
Alignment explanation
Indices: 81078551--81078816 Score: 274
Period size: 45 Copynumber: 5.9 Consensus size: 45
81078541 GATCCAAGAT
*
81078551 GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACTAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-TAACA
* * * * * * *
81078596 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATAACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
81078641 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATC-AGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACA
* *
81078686 GATTTGGCATCTCTGCATTAGACGGGGAGCAGATTGAAGA-AACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
81078730 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * * *
81078775 GATTTGGCGTCTTTGTTTTAGACGGAGAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATA
81078817 GCAGGTATCG
Statistics
Matches: 184, Mismatches: 28, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
43 1 0.01
44 48 0.26
45 114 0.62
46 20 0.11
47 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:81078756 original size:89 final size:90
Alignment explanation
Indices: 81078537--81078816 Score: 265
Period size: 89 Copynumber: 3.2 Consensus size: 90
81078527 CCTTCATTGA
* *
81078537 AGCAGATCCAAGAT----GATTTGGCATCTCTGTATTAGAC-GGGAGCAGATCGAAGACTAGCAG
1 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGA-TAACAG
* * * ** *
81078597 ATCTGACCT-TCATGTGTTTACATC-GA-
65 ATTTGGCATCTC-TG-CATTAGA-CGGAG
*
81078623 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGTAAATC-AGAGATAACAG
1 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATAACAG
*
81078687 ATTTGGCATCTCTGCATTAGACGGGG
65 ATTTGGCATCTCTGCATTAGACGGAG
** * * *
81078713 AGCAGATTGAAGA-AACAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAATAGA
1 AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGA
* * **
81078777 TTTGGCGTCTTTGTTTTAGACGGAG
66 TTTGGCATCTCTGCATTAGACGGAG
*
81078802 AGCAGATCAAAGATA
1 AGCAGATCCAAGATA
81078817 GCAGGTATCG
Statistics
Matches: 160, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
86 14 0.09
88 1 0.01
89 81 0.51
90 50 0.31
91 14 0.09
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.26
Consensus pattern (90 bp):
AGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGA
TTTGGCATCTCTGCATTAGACGGAG
Found at i:81079218 original size:19 final size:19
Alignment explanation
Indices: 81079170--81079224 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
81079160 ATAATCTTTA
81079170 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81079189 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
81079207 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
81079225 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:81079250 original size:22 final size:22
Alignment explanation
Indices: 81079170--81079247 Score: 80
Period size: 18 Copynumber: 3.8 Consensus size: 22
81079160 ATAATCTTTA
81079170 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81079189 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
81079207 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
81079229 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
81079248 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
18 18 0.35
19 14 0.27
22 8 0.15
23 12 0.23
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:81079538 original size:17 final size:17
Alignment explanation
Indices: 81079514--81079548 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
81079504 TGTTTCCCTG
*
81079514 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
81079532 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
81079549 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:81080240 original size:19 final size:20
Alignment explanation
Indices: 81080216--81080259 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
81080206 CCCCATTGTA
* *
81080216 ATTTATTTT-TCAATAAAAT
1 ATTTATTTTAACAAAAAAAT
81080235 ATTTATTTTAACAAAAAAAT
1 ATTTATTTTAACAAAAAAAT
81080255 ATTTA
1 ATTTA
81080260 AAACCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (20 bp):
ATTTATTTTAACAAAAAAAT
Found at i:81081190 original size:513 final size:513
Alignment explanation
Indices: 81080194--81081262 Score: 1876
Period size: 513 Copynumber: 2.1 Consensus size: 513
81080184 GGTTTCGAAA
* *
81080194 CTCTCAATGAAACCCCATTGTAATTTA-TTTTTCAATAAAATATTTATTTTAACAAAAAAATATT
1 CTCTCAATGGAACCCCATTTTAATTTATTTTTTCAATAAAATATTTATTTTAACAAAAAAATATT
*
81080258 TAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAATATTATTTATCGATTTTA
66 TAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAAAATTATTTATCGATTTTA
* * *
81080323 AAATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATGACTAGTAAACTCGATTAACTCCTAGCT
131 AAATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATAACTAGTAAACCCGATTAACCCCTAGCT
81080388 TTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACA
196 TTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACA
* *
81080453 ACATACTTCAGAAACTTTGTGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAAGAGCTT
261 ACATACTTCAGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAAGAGCTT
* *
81080518 CTATGAAAGATAAGTAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCTG
326 CTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCTG
*
81080583 TGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATTAGTATTCATGATATTCGTGATATTTTT
391 TGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTTT
** *
81080648 CTAAAAATATTTTTATTTTCTGGAATATTATATACCTATTTAGTTAATATTGTAATTT
456 CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
*
81080706 CTCTCAATGGAACCCCATTTTAATTTATTTTTTCAATAAAATATTTATTTTAACCAAAAAATATT
1 CTCTCAATGGAACCCCATTTTAATTTATTTTTTCAATAAAATATTTATTTTAACAAAAAAATATT
*
81080771 TAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAAAATTATTTATCGATTTTT
66 TAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAAAATTATTTATCGATTTTA
* *
81080836 AAATGAAATTAAGCTAACTAA-TTTTTTTAAATAAATAACTAGTAAACCCGATTAACCCCTAGCT
131 AAATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATAACTAGTAAACCCGATTAACCCCTAGCT
* *
81080900 TTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGGCGTTACAAACACA
196 TTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACA
** *
81080965 ACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAGGAGCTT
261 ACATACTTCAGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAAGAGCTT
*
81081030 CTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGGGGAAAATATTGGGCGATACTCCT
326 CTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACT-CT
81081095 GTGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTT
390 GTGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTT
*
81081160 TCTAAAAATATTTTTATTTTCCCTAATATTATATACCTATTTAGTTAATATTGTAACTT
455 TCTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
81081219 CTCTCAATGGAACCCCATTTTAA-TT-TTTTTTCAATAAAATATTT
1 CTCTCAATGGAACCCCATTTTAATTTATTTTTTCAATAAAATATTT
81081263 GTCGAAACCT
Statistics
Matches: 530, Mismatches: 25, Indels: 5
0.95 0.04 0.01
Matches are distributed among these distances:
511 19 0.04
512 248 0.47
513 263 0.50
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37
Consensus pattern (513 bp):
CTCTCAATGGAACCCCATTTTAATTTATTTTTTCAATAAAATATTTATTTTAACAAAAAAATATT
TAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATTTTCCGGAAAATTATTTATCGATTTTA
AAATAAAATTAAGCTAACTAATTTTTTTTAAAGAAATAACTAGTAAACCCGATTAACCCCTAGCT
TTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGACCTATTTTTAGGACGTTACAAACACA
ACATACTTCAGAAAATTTGCGATTACAAGTAGGTTTGGACAATTAGGATTGTGATCGAAGAGCTT
CTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAAAGAGGAAAATATTGGGCGATACTCTG
TGGAAGAATTTGTGTCAGCCTAAAAGGATAGGGGTATTAGTATTCATGATATTCGTGATATTTTT
CTAAAAATATTTTTATTTTCCCGAATATTATATACCTATTTAGTTAATATTGTAACTT
Found at i:81082210 original size:15 final size:16
Alignment explanation
Indices: 81082192--81082224 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81082182 ATAAGCAAAT
*
81082192 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
81082207 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
81082223 TA
1 TA
81082225 AAAAAGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:81082220 original size:16 final size:15
Alignment explanation
Indices: 81082148--81082224 Score: 50
Period size: 15 Copynumber: 5.0 Consensus size: 15
81082138 TTTAACCTAC
81082148 TAAACAATATCAAAATA
1 TAAACAA-AT-AAAATA
*
81082165 -AAACAAA-ACAAAAA
1 TAAACAAATA-AAATA
* ** *
81082179 TAAATAAGCAAATTA
1 TAAACAAATAAAATA
*
81082194 TAAACATATAAAATA
1 TAAACAAATAAAATA
81082209 TAAATCAAATAAAATA
1 TAAA-CAAATAAAATA
81082225 AAAAAGATAT
Statistics
Matches: 45, Mismatches: 11, Indels: 9
0.69 0.17 0.14
Matches are distributed among these distances:
13 1 0.02
14 4 0.09
15 23 0.51
16 17 0.38
ACGTcount: A:0.69, C:0.09, G:0.01, T:0.21
Consensus pattern (15 bp):
TAAACAAATAAAATA
Found at i:81082484 original size:19 final size:19
Alignment explanation
Indices: 81082468--81082541 Score: 64
Period size: 21 Copynumber: 3.8 Consensus size: 19
81082458 TAATATATGG
81082468 TAAAATATATAAAATATAA
1 TAAAATATATAAAATATAA
* *
81082487 TAAAATTTAT-AAACA-AA
1 TAAAATATATAAAATATAA
*
81082504 TAATAATATA-AACAATATGA
1 TAA-AATATATAA-AATATAA
81082524 TAAATAATATATAAAATA
1 T-AA-AATATATAAAATA
81082542 ATATATATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
17 5 0.11
18 10 0.23
19 12 0.27
20 2 0.05
21 13 0.30
22 2 0.05
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (19 bp):
TAAAATATATAAAATATAA
Found at i:81082489 original size:10 final size:9
Alignment explanation
Indices: 81082468--81082546 Score: 56
Period size: 9 Copynumber: 8.2 Consensus size: 9
81082458 TAATATATGG
81082468 TAAAATATA
1 TAAAATATA
81082477 TAAAATATAA
1 TAAAATAT-A
*
81082487 TAAAATTTA
1 TAAAATATA
81082496 TAAACA-A-A
1 TAAA-ATATA
81082504 TAATAATATA
1 TAA-AATATA
81082514 -AACAATATGA
1 TAA-AATAT-A
81082524 TAAATAATATA
1 T-AA-AATATA
81082535 TAAAATAATA
1 TAAAAT-ATA
81082545 TA
1 TA
81082547 TATATTAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 17
0.73 0.05 0.22
Matches are distributed among these distances:
8 5 0.09
9 25 0.44
10 18 0.32
11 2 0.04
12 7 0.12
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.32
Consensus pattern (9 bp):
TAAAATATA
Found at i:81082499 original size:28 final size:28
Alignment explanation
Indices: 81082462--81082541 Score: 67
Period size: 28 Copynumber: 2.8 Consensus size: 28
81082452 AAGAGATAAT
*
81082462 ATATGGTAAAATATATAAAATATAATAAA
1 ATATGATAAAATATATAAAATATAA-AAA
* *
81082491 AT-TTATAAACA-A-ATAATAATATAAACA
1 ATATGATAAA-ATATATAA-AATATAAAAA
81082518 ATATGATAAATAATATATAAAATA
1 ATATGAT-AA-AATATATAAAATA
81082542 ATATATATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 13
0.70 0.07 0.23
Matches are distributed among these distances:
27 8 0.20
28 16 0.40
29 6 0.15
30 6 0.15
31 4 0.10
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (28 bp):
ATATGATAAAATATATAAAATATAAAAA
Found at i:81082512 original size:37 final size:36
Alignment explanation
Indices: 81082471--81082626 Score: 126
Period size: 37 Copynumber: 4.2 Consensus size: 36
81082461 TATATGGTAA
*
81082471 AATATATAAAATATAATAAA-ATTTATAAACAAATAAT
1 AATATATAAAATATAATAAATA-ATATAAA-AAATAAT
* *
81082508 AATATA-AACAATATGATAAATAATATATAAAATAAT
1 AATATATAA-AATATAATAAATAATATAAAAAATAAT
* *
81082544 ATATATATTAAAATGTAAGTAATATAATAT--ATAATAAT
1 A-ATATA-TAAAATATAA-TAA-ATAATATAAAAAATAAT
*
81082582 AA-ATA-AATAATATAATAAATAATATACAAAGAAAAAT
1 AATATATAA-AATATAATAAATAATATA-AAA-AATAAT
81082619 AATATATA
1 AATATATA
81082627 CCCTTTTATA
Statistics
Matches: 96, Mismatches: 9, Indels: 26
0.73 0.07 0.20
Matches are distributed among these distances:
33 7 0.07
34 5 0.05
35 6 0.06
36 14 0.15
37 34 0.35
38 17 0.18
39 6 0.06
40 7 0.07
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.32
Consensus pattern (36 bp):
AATATATAAAATATAATAAATAATATAAAAAATAAT
Found at i:81082540 original size:12 final size:12
Alignment explanation
Indices: 81082471--81082607 Score: 74
Period size: 12 Copynumber: 11.5 Consensus size: 12
81082461 TATATGGTAA
81082471 AATATATAAAAT
1 AATATATAAAAT
81082483 -ATA-ATAAAAT
1 AATATATAAAAT
* *
81082493 -TTATAAACAAAT
1 AATATATA-AAAT
*
81082505 AATA-ATATAAAC
1 AATATATA-AAAT
81082517 AATATGAT-AAAT
1 AATAT-ATAAAAT
81082529 AATATATAAAAT
1 AATATATAAAAT
* *
81082541 AATATATATATT
1 AATATATAAAAT
* *
81082553 AAAATGTAAGTAAT
1 AATATATAA--AAT
*
81082567 -ATAATATATAAT
1 AAT-ATATAAAAT
*
81082579 AATAAAT-AAAT
1 AATATATAAAAT
81082590 AATATA-ATAAAT
1 AATATATA-AAAT
81082602 AATATA
1 AATATA
81082608 CAAAGAAAAA
Statistics
Matches: 94, Mismatches: 19, Indels: 24
0.69 0.14 0.18
Matches are distributed among these distances:
10 9 0.10
11 15 0.16
12 57 0.61
13 5 0.05
14 8 0.09
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (12 bp):
AATATATAAAAT
Found at i:81082586 original size:19 final size:16
Alignment explanation
Indices: 81082501--81082603 Score: 56
Period size: 16 Copynumber: 6.4 Consensus size: 16
81082491 ATTTATAAAC
81082501 AAAT-AATAATATAA-
1 AAATAAATAATATAAT
*
81082515 ACAATATGATAA-ATAAT
1 A-AATA-AATAATATAAT
*
81082532 ATATAAAATAATAT-AT
1 AAAT-AAATAATATAAT
* * *
81082548 ATATTAA-AATGTAAGT
1 AAATAAATAATATAA-T
81082564 -AATATAATATATAATAAT
1 AAATA-AATA-AT-ATAAT
81082582 AAATAAATAATATAAT
1 AAATAAATAATATAAT
81082598 AAATAA
1 AAATAA
81082604 TATACAAAGA
Statistics
Matches: 68, Mismatches: 8, Indels: 24
0.68 0.08 0.24
Matches are distributed among these distances:
14 5 0.07
15 8 0.12
16 30 0.44
17 11 0.16
18 7 0.10
19 7 0.10
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
AAATAAATAATATAAT
Found at i:81082592 original size:26 final size:27
Alignment explanation
Indices: 81082502--81082605 Score: 98
Period size: 26 Copynumber: 4.1 Consensus size: 27
81082492 TTTATAAACA
* *
81082502 AATAATAATATAAACAATATGATAAAT
1 AATAATAATATAAATAATATAATAAAT
81082529 AAT-AT-ATA-AAATAATAT-AT--AT
1 AATAATAATATAAATAATATAATAAAT
* * * *
81082550 ATTAA-AATGTAAGTAATATAATATAT
1 AATAATAATATAAATAATATAATAAAT
81082576 AATAATAA-ATAAATAATATAATAAAT
1 AATAATAATATAAATAATATAATAAAT
81082602 AATA
1 AATA
81082606 TACAAAGAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 15
0.73 0.09 0.18
Matches are distributed among these distances:
21 4 0.06
22 3 0.05
23 10 0.16
24 10 0.16
25 3 0.05
26 27 0.44
27 5 0.08
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (27 bp):
AATAATAATATAAATAATATAATAAAT
Found at i:81082619 original size:26 final size:26
Alignment explanation
Indices: 81082563--81082619 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
81082553 AAAATGTAAG
* * *
81082563 TAATATAATATATAATAATAAATAAA
1 TAATATAATAAATAATAACAAAGAAA
81082589 TAATATAATAAATAATATACAAAGAAA
1 TAATATAATAAATAATA-ACAAAGAAA
81082616 -AATA
1 TAATA
81082620 ATATATACCC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
TAATATAATAAATAATAACAAAGAAA
Found at i:81082730 original size:26 final size:26
Alignment explanation
Indices: 81082679--81082730 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
81082669 TTTTTAAAAT
*
81082679 AAATTGAATTTATAAAAAAAGGATTA
1 AAATTGAATTTATAAAAAAAGAATTA
*
81082705 AAATTTAATTTAATAAAAAAA-AATTA
1 AAATTGAATTT-ATAAAAAAAGAATTA
81082731 GGGTTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 14 0.61
27 9 0.39
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.33
Consensus pattern (26 bp):
AAATTGAATTTATAAAAAAAGAATTA
Found at i:81084195 original size:44 final size:44
Alignment explanation
Indices: 81084145--81084416 Score: 436
Period size: 44 Copynumber: 6.2 Consensus size: 44
81084135 ACTCACGAAC
* * * *
81084145 GCCAAATCTGTTATCTCCGATCTACTCCCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
81084189 GCCAAATCTGCTATCTTCAATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
81084233 GCCAAATCTGCTACCTTCGATCTGCTCTCTGACAATACAAAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
81084277 GCCAAATCTGCTATCTTCGATATGCTCTCTGACAATATAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
*
81084321 GCCAAATCTGCTATCTTCGATCTGCTCTCTGTCAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
* *
81084365 GCCAAATTTGCTATCTTCGATTTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
81084409 GCCAAATC
1 GCCAAATC
81084417 ATCTTGGATC
Statistics
Matches: 209, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 209 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
Found at i:81084530 original size:133 final size:131
Alignment explanation
Indices: 81084194--81084597 Score: 396
Period size: 132 Copynumber: 3.1 Consensus size: 131
81084184 GAGATGCCAA
* * * * * *
81084194 ATCTGCTA--TCTTCAATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCTACCTTCGATCTG
1 ATCTGCTATGTCTTCAATCTACTCTCCGTCAATACAGAGATGCCAAATTTGCTATCTTCGATTTG
* * ** * * *
81084257 CTCTCTGACAATACAAAGATGCCAAATCTGCTATCTTCGATATGCTCTCTG--ACAATA--TAGA
66 CTCTCTGACAATACAGAGATGCCAAA--T-C-ATCTTGGACCTGCT-TCAGCAAAAACACCT-GA
* * *
81084318 GATGCCAA
125 -AGGTCAG
* * *
81084326 ATCTGCTA--TCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATTTGCTATCTTCGATTTG
1 ATCTGCTATGTCTTCAATCTACTCTCCGTCAATACAGAGATGCCAAATTTGCTATCTTCGATTTG
*
81084389 CTCTCTGACAATACAGAGATGCCAAATCATCTTGGATCTGCTTCGATGCAAAAACATCC-GAAGG
66 CTCTCTGACAATACAGAGATGCCAAATCATCTTGGACCTGCTTC-A-GCAAAAACA-CCTGAAGG
*
81084453 TTAG
128 TCAG
** *
81084457 ATCTGCTATGTCTTCAATCTACTCTCCGTCGAATATGGAGATGCCAAATTTG-TTTCTTCGATTT
1 ATCTGCTATGTCTTCAATCTACTCTCCGTC-AATACAGAGATGCCAAATTTGCTATCTTCGATTT
* **
81084521 GTTCTCTGACAATACAGAGATGCCAAATCATCTTGGACCTGCTTCAGCGTAAACACCTGAAGGTC
65 GCTCTCTGACAATACAGAGATGCCAAATCATCTTGGACCTGCTTCAGCAAAAACACCTGAAGGTC
81084586 AG
130 AG
81084588 ATCTGCTATG
1 ATCTGCTATG
81084598 CTTTAGCCTG
Statistics
Matches: 235, Mismatches: 26, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
127 2 0.01
128 12 0.05
129 2 0.01
130 3 0.01
131 40 0.17
132 86 0.37
133 71 0.30
134 19 0.08
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (131 bp):
ATCTGCTATGTCTTCAATCTACTCTCCGTCAATACAGAGATGCCAAATTTGCTATCTTCGATTTG
CTCTCTGACAATACAGAGATGCCAAATCATCTTGGACCTGCTTCAGCAAAAACACCTGAAGGTCA
G
Found at i:81088669 original size:46 final size:45
Alignment explanation
Indices: 81088585--81088767 Score: 142
Period size: 46 Copynumber: 3.8 Consensus size: 45
81088575 TTTGAGTACT
* *
81088585 TCTGATCAAGTGACAAAGT-GATAAGTGGT-AGCTTTAGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGGA-AAGTGATAAG-TATAGCTACACTTA
* *
81088631 TCTGCTCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGTGACAAGTGGAAAGTGATAAGT-ATA------GCTACACTTA
*
81088683 TCTGATCAAGTGACAAAGT-GATAAGTGAT-AGCT-TCGGCTACACTTA
1 TCTGATCAAGTGAC-AAGTGGA-AAGTGATAAG-TAT-AGCTACACTTA
*
81088729 TCTGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCT
1 TCTGATCAAGTGACAAGTGGAAAGTGATAAGT-ATAGCT
81088768 TCGGCTATAC
Statistics
Matches: 111, Mismatches: 9, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
45 23 0.21
46 48 0.43
47 1 0.01
51 1 0.01
52 26 0.23
53 12 0.11
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGACAAGTGGAAAGTGATAAGTATAGCTACACTTA
Found at i:81088670 original size:52 final size:51
Alignment explanation
Indices: 81088599--81088807 Score: 275
Period size: 52 Copynumber: 4.1 Consensus size: 51
81088589 ATCAAGTGAC
* ** *
81088599 AAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGCTCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGT-G
* *
81088651 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAC-----
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
81088697 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
* *
81088748 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGACAAAGTG
1 -AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC-AAGTG
81088801 ATAAGTG
1 A-AAGTG
81088808 GCTACACTTA
Statistics
Matches: 139, Mismatches: 10, Indels: 15
0.85 0.06 0.09
Matches are distributed among these distances:
46 44 0.32
52 85 0.61
53 10 0.07
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:81088754 original size:98 final size:98
Alignment explanation
Indices: 81088585--81088807 Score: 383
Period size: 98 Copynumber: 2.3 Consensus size: 98
81088575 TTTGAGTACT
* * *
81088585 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGCTCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
81088650 GAAAGTGATAAGTAATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
81088683 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
81088748 AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
66 AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
*
81088781 TCTGATCAAGAGACAAAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
81088808 GCTACACTTA
Statistics
Matches: 118, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 118 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (98 bp):
TCTGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
AAAAGTGATAAGTAATAGCTTCGGCTATACTTA
Found at i:81088817 original size:37 final size:37
Alignment explanation
Indices: 81088770--81088879 Score: 170
Period size: 37 Copynumber: 3.0 Consensus size: 37
81088760 TGATAGCTTC
*
81088770 GGCTATACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
* *
81088807 GGCTACACTTATCTGATCAAGAAACAAAGTGATAGGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
*
81088844 GGCTACACTTATCTGATC-AGGGAC-AAGTGATAAGT
1 GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
81088879 G
1 G
81088880 ATCATACGTA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.16
36 4 0.06
37 52 0.78
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.25
Consensus pattern (37 bp):
GGCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
Found at i:81090787 original size:43 final size:44
Alignment explanation
Indices: 81090739--81090890 Score: 193
Period size: 45 Copynumber: 3.4 Consensus size: 44
81090729 GCTTTTCTCA
*
81090739 CCTGCTAGGCTCG-AGGCCC-TATA-TCATTTCACCGGTACTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATAGT-ATTTCACCGGTA-TATAG
* *
81090782 CCTGCTAGGCTCGAAAGCCCGAATAGTATCTCACCGGTATTATAG
1 CCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGTA-TATAG
* *
81090827 CCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATCATAG
1 CCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGTAT-ATAG
*
81090872 CCTGCTAGGCACGAAGGCC
1 CCTGCTAGGCTCGAAGGCC
81090891 GTATACACAT
Statistics
Matches: 95, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
43 13 0.14
44 6 0.06
45 75 0.79
46 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.23, T:0.23
Consensus pattern (44 bp):
CCTGCTAGGCTCGAAGGCCCGAATAGTATTTCACCGGTATATAG
Found at i:81090941 original size:43 final size:43
Alignment explanation
Indices: 81090780--81091154 Score: 461
Period size: 43 Copynumber: 8.7 Consensus size: 43
81090770 CCGGTACTAT
* * * * **
81090780 AGCCTGCTAGGCTCGAAAGCCCGAATAGTATC-TCACCGGTATTA
1 AGCCTGCTAGGCACGAAGGCCCGAATA-CA-CATCACCGGCACGA
* * * **
81090824 TAGCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACCGGCATC-A
1 -AGCCTGCTAGGCACGAAGGCCCGAATA-CACATCACCGGCA-CGA
* *
81090869 TAGCCTGCTAGGCACGAAGG-CCGTATACACATCACCAGCACGA
1 -AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
81090912 AGCCTGCTAGACACGAAGGCCTGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
81090955 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGTACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* * *
81090998 AGCCTGCTAGGCACAAAGGCCCGAATACACATCATCAGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
81091041 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
81091084 AGCCTGCTAGGCACGAAGGCCCGAGTACACATCACTGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
81091127 AG-CTGCTAGGCACGAAGGCCCGGATACA
1 AGCCTGCTAGGCACGAAGGCCCGAATACA
81091155 AAGGCCCGAA
Statistics
Matches: 294, Mismatches: 32, Indels: 11
0.87 0.09 0.03
Matches are distributed among these distances:
42 43 0.15
43 190 0.65
44 6 0.02
45 55 0.19
ACGTcount: A:0.30, C:0.31, G:0.24, T:0.14
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
Found at i:81091169 original size:56 final size:57
Alignment explanation
Indices: 81091099--81091211 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 57
81091089 GCTAGGCACG
* *
81091099 AAGGCCCGAGTACACATCACTGGCACGAAG-CTGCTAGGCACGAAGGCCCGGATACA
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGGATACA
*
81091155 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACA
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGGATACA
81091212 CATCACCGGC
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
56 28 0.53
57 25 0.47
ACGTcount: A:0.31, C:0.31, G:0.27, T:0.11
Consensus pattern (57 bp):
AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGGATACA
Found at i:81091186 original size:142 final size:143
Alignment explanation
Indices: 81091010--81091297 Score: 488
Period size: 142 Copynumber: 2.0 Consensus size: 143
81091000 CCTGCTAGGC
*
81091010 ACAAAGGCCCGAATACACATCATCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA
1 ACAAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA
* *
81091075 CCGACACGAAGCCTGCTAGGCACGAAGGCCCGAGTACACATCACTGGCACGAAG-CTGCTAGGCA
66 CCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCA
*
81091139 CGAAGGCCCGGAT
131 CGAAGGCCCGAAT
* * *
81091152 ACAAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACACATCA
1 ACAAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA
*
81091217 CCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCA
66 CCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCA
*
81091282 TGAAGGCCCGAAT
131 CGAAGGCCCGAAT
81091295 ACA
1 ACA
81091298 CATCACCGGC
Statistics
Matches: 136, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
142 112 0.82
143 24 0.18
ACGTcount: A:0.32, C:0.33, G:0.25, T:0.10
Consensus pattern (143 bp):
ACAAAGGCCCGAATACACATCACCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCA
CCGACACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCA
CGAAGGCCCGAAT
Found at i:81091211 original size:43 final size:43
Alignment explanation
Indices: 81091155--81091318 Score: 301
Period size: 43 Copynumber: 3.8 Consensus size: 43
81091145 CCCGGATACA
81091155 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
* *
81091198 AAGGCCTGGATACACATCACCGGCACGAAGCCTGCTAGGCACG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
*
81091241 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
81091284 AAGGCCCGAATACACATCACCGGCACGAAGCCTGC
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGC
81091319 AAGATTTAAC
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 116 1.00
ACGTcount: A:0.30, C:0.34, G:0.26, T:0.10
Consensus pattern (43 bp):
AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACG
Found at i:81091289 original size:185 final size:185
Alignment explanation
Indices: 81090970--81091314 Score: 600
Period size: 185 Copynumber: 1.9 Consensus size: 185
81090960 GCTAGGCACG
* *
81090970 AAGGCCCGAATACACATCACCGGTACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCATCA
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCA
81091035 GCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGA
66 GCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGA
* *
81091100 AGGCCCGAGTACACATCACTGGCACGAAGCTGCTAGGCACGAAGGCCCGGATACA
131 AGGCCCGAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGCCCGGATACA
* * * *
81091155 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCTGGATACACATCACCG
1 AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCA
* *
81091220 GCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCATGA
66 GCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGA
81091285 AGGCCCGAATACACATCACCGGCACGAAGC
131 AGGCCCGAATACACATCACCGGCACGAAGC
81091315 CTGCAAGATT
Statistics
Matches: 150, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
185 150 1.00
ACGTcount: A:0.31, C:0.33, G:0.25, T:0.10
Consensus pattern (185 bp):
AAGGCCCGAATACACATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACACATCACCA
GCACGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGACACGAAGCCTGCTAGGCACGA
AGGCCCGAATACACATCACCGGCACGAAGCTGCTAGGCACGAAGGCCCGGATACA
Found at i:81098618 original size:49 final size:47
Alignment explanation
Indices: 81098491--81098660 Score: 286
Period size: 47 Copynumber: 3.6 Consensus size: 47
81098481 CCCTTCGGGA
* * * *
81098491 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATCCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
81098538 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
81098585 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
81098634 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
81098661 TATTCAAATA
Statistics
Matches: 117, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
47 70 0.60
49 47 0.40
ACGTcount: A:0.28, C:0.31, G:0.07, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:81100572 original size:43 final size:43
Alignment explanation
Indices: 81100516--81100869 Score: 609
Period size: 43 Copynumber: 8.2 Consensus size: 43
81100506 CCGACATCAT
* *
81100516 AGCCTGCTAGGCACGAAGGCCTGAATACACATCACCAGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
81100559 AGCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCAGGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
81100602 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
81100645 AGCCTGCTAAGCACGAAGGCCCGAATACACATCACCGACACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
81100688 AGCCTGCTAGGCACGAAGGCCAGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
81100731 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
*
81100774 AGCCTGCTAGGCACGAAGGCCCGAATACACATCATCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
* *
81100817 AGCCTACTAGGCACGAAGGCCCGAATACACATCATCGGCACGA
1 AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
81100860 AGCCTGCTAG
1 AGCCTGCTAG
81100870 ATTTAACCCG
Statistics
Matches: 295, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 295 1.00
ACGTcount: A:0.32, C:0.33, G:0.25, T:0.10
Consensus pattern (43 bp):
AGCCTGCTAGGCACGAAGGCCCGAATACACATCACCGGCACGA
Found at i:81104970 original size:28 final size:28
Alignment explanation
Indices: 81104938--81105007 Score: 113
Period size: 28 Copynumber: 2.5 Consensus size: 28
81104928 TATGGTATTC
*
81104938 AGTGTACAAAATATTGAGAATGACACTT
1 AGTGTGCAAAATATTGAGAATGACACTT
* *
81104966 AGTGTGCGAGATATTGAGAATGACACTT
1 AGTGTGCAAAATATTGAGAATGACACTT
81104994 AGTGTGCAAAATAT
1 AGTGTGCAAAATAT
81105008 CGAATGATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (28 bp):
AGTGTGCAAAATATTGAGAATGACACTT
Found at i:81107009 original size:28 final size:28
Alignment explanation
Indices: 81106978--81107135 Score: 145
Period size: 28 Copynumber: 5.6 Consensus size: 28
81106968 GTGAACATAG
* *
81106978 GCACTGTGTGTGTGAGTTCCATAACCGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
* * ****
81107006 GCACTGTGTGTGCGAGATCGGTTGTTGA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
*
81107034 GGCACTGTGTGTGCGAGTTCCGTAACCGG
1 -GCACTGTGTGTGCGAGTTCCGTAACCGA
* * *****
81107063 GCACTGTGTGTGCGAGATCGGTTGTTAA
1 GCACTGTGTGTGCGAGTTCCGTAACCGA
81107091 GACACTGTGTGTGCGAGTTCCGTAACCGA
1 G-CACTGTGTGTGCGAGTTCCGTAACCGA
*
81107120 GCACTGTGTGTACGAG
1 GCACTGTGTGTGCGAG
81107136 ATCGGTTGTT
Statistics
Matches: 97, Mismatches: 31, Indels: 4
0.73 0.23 0.03
Matches are distributed among these distances:
28 55 0.57
29 42 0.43
ACGTcount: A:0.18, C:0.20, G:0.35, T:0.28
Consensus pattern (28 bp):
GCACTGTGTGTGCGAGTTCCGTAACCGA
Found at i:81107045 original size:29 final size:29
Alignment explanation
Indices: 81107006--81107191 Score: 187
Period size: 29 Copynumber: 6.4 Consensus size: 29
81106996 CCATAACCGA
81107006 GCACTGTGTGTGCGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * ****
81107035 GCACTGTGTGTGCGAGTTCCGTAACCG-G
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
81107063 GCACTGTGTGTGCGAGATCGGTTGTTAAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* * * ****
81107092 ACACTGTGTGTGCGAGTTCCGTAACCGA-
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
*
81107120 GCACTGTGTGTACGAGATCGGTTGTTGAG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
* *
81107149 GCACTGTGTGTGCAAGATCGGTTGTTGGG
1 GCACTGTGTGTGCGAGATCGGTTGTTGAG
81107178 GCACTAAGTGTGTG
1 GCACT--GTGTGTG
81107192 AAATGAGATC
Statistics
Matches: 121, Mismatches: 32, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
28 41 0.34
29 73 0.60
31 7 0.06
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (29 bp):
GCACTGTGTGTGCGAGATCGGTTGTTGAG
Found at i:81107045 original size:57 final size:57
Alignment explanation
Indices: 81106976--81107161 Score: 318
Period size: 57 Copynumber: 3.3 Consensus size: 57
81106966 AAGTGAACAT
* *
81106976 AGGCACTGTGTGTGTGAGTTCCATAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
81107033 AGGCACTGTGTGTGCGAGTTCCGTAACCGGGCACTGTGTGTGCGAGATCGGTTGTTA
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* *
81107090 AGACACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
81107147 AGGCACTGTGTGTGC
1 AGGCACTGTGTGTGC
81107162 AAGATCGGTT
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 120 1.00
ACGTcount: A:0.17, C:0.19, G:0.35, T:0.28
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:81113519 original size:26 final size:26
Alignment explanation
Indices: 81113488--81113595 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81113478 TGAAATGCCC
*
81113488 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
81113514 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
81113540 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
81113566 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
81113592 ATCA
1 ATCA
81113596 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:81115191 original size:28 final size:28
Alignment explanation
Indices: 81115159--81115219 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
81115149 TATGGTACTC
81115159 AGTGTACGAAATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
** *
81115187 AGTGTGTGAGATATTGAGAATGACACTT
1 AGTGTACGAAATATTGAGAATGACACTT
81115215 AGTGT
1 AGTGT
81115220 GAAAAATATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.34, C:0.08, G:0.26, T:0.31
Consensus pattern (28 bp):
AGTGTACGAAATATTGAGAATGACACTT
Found at i:81115235 original size:26 final size:28
Alignment explanation
Indices: 81115167--81115228 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
81115157 TCAGTGTACG
**
81115167 AAATATTGAGAATGACACTTAGTGTGTG
1 AAATATTGAGAATGACACTTAGTGTGAA
*
81115195 AGATATTGAGAATGACACTTAGTGTGAA
1 AAATATTGAGAATGACACTTAGTGTGAA
81115223 AAATAT
1 AAATAT
81115229 CGAATGATTC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGAA
Found at i:81126174 original size:47 final size:47
Alignment explanation
Indices: 81126121--81126556 Score: 710
Period size: 47 Copynumber: 9.3 Consensus size: 47
81126111 ACAAGATATG
81126121 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * *
81126168 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
81126215 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
81126262 TATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
81126309 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * *
81126356 TATATGTGACAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
81126403 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
* * * * * *
81126450 TATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
81126497 TATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTA
1 TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
*
81126544 TAAATGTGATAAG
1 TATATGTGATAAG
81126557 TCCCGAAGGG
Statistics
Matches: 357, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 357 1.00
ACGTcount: A:0.34, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
TATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTA
Found at i:81126315 original size:25 final size:25
Alignment explanation
Indices: 81126287--81126364 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
81126277 CTAATGGCCA
81126287 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * ***
81126312 ATGTGAT-AAGGCCG-AA-TGGCCA-
1 ATGTGATGAATG-TGAAAGTGTATAT
81126334 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
81126359 ATGTGA
1 ATGTGA
81126365 CAAGGCCTAA
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 8 0.21
23 8 0.21
24 8 0.21
25 14 0.37
ACGTcount: A:0.35, C:0.05, G:0.29, T:0.31
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:81133294 original size:15 final size:16
Alignment explanation
Indices: 81133276--81133308 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
81133266 ATAAGCCAAT
*
81133276 TATAAA-CATATAAAA
1 TATAAATCAAATAAAA
81133291 TATAAATCAAATAAAA
1 TATAAATCAAATAAAA
81133307 TA
1 TA
81133309 AAAAAGATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
TATAAATCAAATAAAA
Found at i:81133591 original size:20 final size:19
Alignment explanation
Indices: 81133553--81133594 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
81133543 TAATATATGG
*
81133553 TAAAATATATAACATATAA
1 TAAAATATATAACAAATAA
*
81133572 TAAAATTTATAAACAAATAA
1 TAAAATATAT-AACAAATAA
81133592 TAA
1 TAA
81133595 TATAAACAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATAACAAATAA
Found at i:81133677 original size:26 final size:26
Alignment explanation
Indices: 81133602--81133690 Score: 94
Period size: 26 Copynumber: 3.4 Consensus size: 26
81133592 TAATATAAAC
81133602 AATATGATAAGTAATATATAAAATAATAT
1 AATAT-ATAA-TAATATAT-AAATAATAT
* * *
81133631 -ATATAT--TAAAATGTAAGTAATAT
1 AATATATAATAATATATAAATAATAT
81133654 AATATATAATAATATATAAATAATAT
1 AATATATAATAATATATAAATAATAT
*
81133680 AATAAATAATA
1 AATATATAATA
81133691 TACAAAGAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
23 8 0.16
24 12 0.24
26 24 0.48
27 2 0.04
28 4 0.08
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (26 bp):
AATATATAATAATATATAAATAATAT
Found at i:81133704 original size:26 final size:26
Alignment explanation
Indices: 81133649--81133704 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
81133639 AAATGTAAGT
* * * *
81133649 AATATAATATATAATAATATATAAAT
1 AATATAATAAATAATAATACAAAAAA
81133675 AATATAATAAATAAT-ATACAAAGAAA
1 AATATAATAAATAATAATACAAA-AAA
81133701 AATA
1 AATA
81133705 ATATATACCC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (26 bp):
AATATAATAAATAATAATACAAAAAA
Found at i:81136470 original size:513 final size:513
Alignment explanation
Indices: 81135038--81136849 Score: 3184
Period size: 513 Copynumber: 3.5 Consensus size: 513
81135028 GGGCTGTTAC
81135038 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
*
81135103 TTCTGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
66 TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
*
81135168 CTAGTAAACCCAATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
131 CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
* *
81135233 CCTATTTTTAGGGCATTACAAACACAACATAATTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
196 CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
* *
81135298 CAATTAGGATTGTGATCGAGAAGCTTCTATCAAAGATAAGCATAATTTGGTGGTCTGGAAAGGAA
261 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
81135363 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
326 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
* *
81135428 AGTATTCATGATATTTGTGATATTTTTCTAAAAATATTTTTATTTTCCGGAATATTATATACCTA
391 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
81135493 TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
456 TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
*
81135551 AATATTCATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
*
81135616 TTCCGGAATATTATTTACCGATTTTTAAATGAAATTAAGCTAACTAATATTTTTTTAAAGAAATG
66 TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAAT-TTTTTTTAAAGAAATG
*
81135681 ACTAGTAAACCCTATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAG
130 ACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAG
*
81135746 ACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATCTGCGATTACAAGTAGGTTTGG
195 ACCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGG
* *
81135811 ACAATTAGGATTGTGATCAAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAATGGA
260 ACAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGA
* * *
81135876 AAGAGGAAAATATAGGGCGGTACTCTCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTAT
325 AAGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTAT
81135941 TAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCT
390 TAGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCT
81136006 ATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
455 ATTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
* *
81136065 AATATTTATTTTAGCCAAAAAGTATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
* * *
81136130 TTCCGGAATATTATTTATCGATTTTAAAATAAAATTAAGCTAACTAATTGTTTTTAAAGAAATGA
66 TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
* * * *
81136195 CAAGTAAAACCGATTAACTCCTAGTTTTCACCCGGAACCCGATAAACTTACTCAAAACTAGTAGA
131 CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
*
81136260 CCTATTTGTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
196 CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
* *
81136325 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGTAGAATTTGGTGGTTTGGAAAGGAA
261 CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
*
81136390 GGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
326 AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
81136455 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
391 AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
81136520 TTTAGTTAATATTGTAA-TTGCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
456 TTTAGTTAATATTGTAACTT-CTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
81136578 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
1 AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
** * *
81136643 TTTTGGAATATTATTTA-C--TGTTTTAAATTAAATTAAGTTAACTAATTTTTTTTTTAAAGAAA
66 TTCCGGAATATTATTTATCGAT-TTTTAAATGAAATTAAGCTAACTAA--TTTTTTTTAAAGAAA
* *
81136705 TGACTAGTTAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAAT
128 TGACTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGT
* *
81136770 AGACCTATTTTTAGGGCCG-TACAAACACAACATGCTTTGAAAAATTTGCGATTACAAGTAGGTT
193 AGACCTATTTTTAGGG-CGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTT
*
81136834 TGGAGAATTAGGATTG
257 TGGACAATTAGGATTG
81136850 GACAAAGGGT
Statistics
Matches: 1237, Mismatches: 56, Indels: 12
0.95 0.04 0.01
Matches are distributed among these distances:
510 1 0.00
511 22 0.02
512 3 0.00
513 715 0.58
514 496 0.40
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (513 bp):
AATATTTATTTTAACCAAAAAATATTTAAAACCATAAAATTGATTTCTCTAAAAATATTTTTATT
TTCCGGAATATTATTTATCGATTTTTAAATGAAATTAAGCTAACTAATTTTTTTTAAAGAAATGA
CTAGTAAACCCGATTAACTCCTAGCTTTCACCCGGAACTCGATAAACTTACTCAAAACTAGTAGA
CCTATTTTTAGGGCGTTACAAACACAACATACTTTGGAAAATTTGCGATTACAAGTAGGTTTGGA
CAATTAGGATTGTGATCGAGGAGCTTCTATCAAAGATAAGCAGAATTTGGTGGTCTGGAAAGGAA
AGAGGAAAATATTGGGCGATACTCCCGTGGAAGAATTTGTGTCAGCCTAAAAGGATGGGGGTATT
AGTATTCATGATATTCGTGATATTTTTCTAAAAATATTTTTATTTTCCCGAATATTATATACCTA
TTTAGTTAATATTGTAACTTCTCTCAATGAAACCCCATTTTAATTTATTTTTCAATAA
Found at i:81142764 original size:47 final size:47
Alignment explanation
Indices: 81142707--81142836 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
81142697 GGTGGAATAA
* * * * * * *
81142707 TACCTAGATTTGGCTATGAGCCTTGATATAGGTATTCTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
* * *
81142754 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
81142801 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
81142837 TATCGATTGT
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCCGAGAGAAGT
Found at i:81144604 original size:7 final size:7
Alignment explanation
Indices: 81144594--81144629 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
81144584 TTTTATATAC
81144594 TAATAAA
1 TAATAAA
81144601 TAATAAA
1 TAATAAA
81144608 TAATGAAA
1 TAAT-AAA
*
81144616 TAATATA
1 TAATAAA
81144623 TAATAAA
1 TAATAAA
81144630 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:81144618 original size:15 final size:14
Alignment explanation
Indices: 81144594--81144629 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
81144584 TTTTATATAC
81144594 TAATAAATAATAAA
1 TAATAAATAATAAA
*
81144608 TAATGAAATAATATA
1 TAAT-AAATAATAAA
81144623 TAATAAA
1 TAATAAA
81144630 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:81144673 original size:17 final size:17
Alignment explanation
Indices: 81144651--81144726 Score: 75
Period size: 17 Copynumber: 4.4 Consensus size: 17
81144641 ATAGGGAATA
81144651 ATATATAATAAAATATT
1 ATATATAATAAAATATT
81144668 ATATATAATAAAATATAT
1 ATATATAATAAAATAT-T
* *
81144686 AAATAATATGATAAAATATC
1 --AT-ATATAATAAAATATT
*
81144706 ATATA-AATAAAA-ATA
1 ATATATAATAAAATATT
81144721 ATATAT
1 ATATAT
81144727 TCTATTTTTT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
15 7 0.14
16 6 0.12
17 19 0.38
18 3 0.06
20 2 0.04
21 13 0.26
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.36
Consensus pattern (17 bp):
ATATATAATAAAATATT
Found at i:81144699 original size:24 final size:23
Alignment explanation
Indices: 81144668--81144715 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
81144658 ATAAAATATT
81144668 ATATATAATAAAAT-ATATAAATA
1 ATATATAA-AAAATCATATAAATA
*
81144691 ATATGATAAAATATCATATAAATA
1 ATAT-ATAAAAAATCATATAAATA
81144715 A
1 A
81144716 AAATAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
ATATATAAAAAATCATATAAATA
Found at i:81146212 original size:44 final size:44
Alignment explanation
Indices: 81146152--81146643 Score: 700
Period size: 44 Copynumber: 11.2 Consensus size: 44
81146142 AGCCGAAATG
*** *
81146152 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCCGTTACC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * * * *
81146196 CTCGATCTGCTCTCTGACAATATAGAGGCACCAAATCTACCATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * *
81146240 TTCGA-CTTGCTCTTTGACCATACAGAGATGCCAAATCTACTATC
1 TTCGATC-TGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * *
81146284 TTCGATCTGCTCTCTGACAATATAGAAACGTC-AATCCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT-CTACTATC
* * *
81146328 TTCGATCTGCTCTCTGACAATATAGGGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* *
81146372 TTCGATCTGCTCTCTGACAATACAGGGACGCCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
81146416 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* * *
81146460 TTCGATCTACTCTCTGACAATACAGGGATGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* *
81146504 TTCGATCTGCTCTCTGACAATACAGAGACACCAAATCTGCTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
*
81146548 TTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
* *
81146592 TTTGATCTGCTCTCTGACAATACAGGGACGCCAAATCTACTATC
1 TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
81146636 TTCGATCT
1 TTCGATCT
81146644 ACATTGTCCC
Statistics
Matches: 399, Mismatches: 45, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
43 4 0.01
44 391 0.98
45 4 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (44 bp):
TTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCTACTATC
Found at i:81158621 original size:15 final size:14
Alignment explanation
Indices: 81158597--81158747 Score: 55
Period size: 15 Copynumber: 10.4 Consensus size: 14
81158587 TTTTATATAC
81158597 TAATAAATAATAAA
1 TAATAAATAATAAA
*
81158611 TAATGAAATAATATA
1 TAAT-AAATAATAAA
**
81158626 TAATAAA-AGGAAGA
1 TAATAAATAATAA-A
***
81158640 TAAT--ATAGGGAA
1 TAATAAATAATAAA
*
81158652 TAATATATAATAAAA
1 TAATAAATAAT-AAA
*
81158667 TATGATATATAATAAAA
1 TA--ATAAATAAT-AAA
81158684 TATATAAATAA-AATA
1 TA-ATAAATAATAA-A
81158699 TAATGAAAT-ATAAA
1 TAAT-AAATAATAAA
*
81158713 TAATATGATAA-AATA
1 TAATA-AATAATAA-A
81158728 TCATATAAATAA-AAA
1 T-A-ATAAATAATAAA
81158743 TAATA
1 TAATA
81158748 TATACTATTT
Statistics
Matches: 109, Mismatches: 12, Indels: 33
0.71 0.08 0.21
Matches are distributed among these distances:
12 6 0.06
13 10 0.09
14 30 0.28
15 31 0.28
16 14 0.13
17 18 0.17
ACGTcount: A:0.63, C:0.01, G:0.07, T:0.30
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:81158631 original size:29 final size:28
Alignment explanation
Indices: 81158591--81158751 Score: 80
Period size: 29 Copynumber: 5.2 Consensus size: 28
81158581 TTTAATTTTT
81158591 ATATACTAATAAATAATAAATAATGAAATA
1 ATATA-TAATAAATAATAAATAAT-AAATA
**
81158621 ATATATAATAAA-AGGAAGATAATATAGGGAATA
1 ATATATAATAAATAATAA-AT-A-ATA---AATA
*
81158654 ATATATAATAAAATATGATATATAATAAAATA
1 ATATATAAT-AAATA--ATAAATAAT-AAATA
*
81158686 TATAAATAA-AATATAATGAAAT-ATAAATA
1 -ATATATAATAA-ATAAT-AAATAATAAATA
81158715 ATATGATAA-AATATCATATAAATAA-AAATA
1 ATAT-ATAATAA-AT-A-ATAAATAATAAATA
81158745 ATATATA
1 ATATATA
81158752 CTATTTTTAT
Statistics
Matches: 105, Mismatches: 8, Indels: 37
0.70 0.05 0.25
Matches are distributed among these distances:
28 6 0.06
29 26 0.25
30 25 0.24
31 10 0.10
32 7 0.07
33 20 0.19
34 5 0.05
35 3 0.03
36 2 0.02
37 1 0.01
ACGTcount: A:0.62, C:0.01, G:0.06, T:0.30
Consensus pattern (28 bp):
ATATATAATAAATAATAAATAATAAATA
Found at i:81158669 original size:10 final size:10
Alignment explanation
Indices: 81158650--81158738 Score: 60
Period size: 10 Copynumber: 8.9 Consensus size: 10
81158640 TAATATAGGG
*
81158650 AATAATATAT
1 AATAAAATAT
81158660 AATAAAATAT
1 AATAAAATAT
*
81158670 GAT---ATAT
1 AATAAAATAT
81158677 AATAAAATATAT
1 AAT-AAA-ATAT
81158689 AAATAAAATAT
1 -AATAAAATAT
*
81158700 AATGAAATAT
1 AATAAAATAT
*
81158710 AA-ATAATAT
1 AATAAAATAT
*
81158719 GATAAAATAT
1 AATAAAATAT
*
81158729 CATATAAATA
1 AATA-AAATA
81158739 AAAATAATAT
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
7 6 0.10
9 6 0.10
10 31 0.50
11 9 0.15
12 7 0.11
13 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AATAAAATAT
Found at i:81158676 original size:17 final size:16
Alignment explanation
Indices: 81158654--81158722 Score: 68
Period size: 17 Copynumber: 4.2 Consensus size: 16
81158644 ATAGGGAATA
81158654 ATATATAATAAAATATG
1 ATATATAA-AAAATATG
81158671 ATATATAATAAAATAT-
1 ATATATAA-AAAATATG
* *
81158687 ATAAATAAAATATAATG
1 ATATATAAAAAAT-ATG
* *
81158704 AAATATAAATAATATG
1 ATATATAAAAAATATG
81158720 ATA
1 ATA
81158723 AAATATCATA
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
15 4 0.09
16 14 0.33
17 25 0.58
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (16 bp):
ATATATAAAAAATATG
Found at i:81158694 original size:40 final size:42
Alignment explanation
Indices: 81158650--81158747 Score: 112
Period size: 40 Copynumber: 2.3 Consensus size: 42
81158640 TAATATAGGG
* *
81158650 AATAATATATAATAAAATAT-GAT-ATATAATAAAATATATA
1 AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
* *
81158690 AATAAAATATAATGAAATATAAATAATATGATAAAATATCATATA
1 AATAAAATATAATAAAATATAAATAATATAAT-AAA-AT-ATATA
81158735 AATAAAA-ATAATA
1 AATAAAATATAATA
81158748 TATACTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
40 18 0.38
41 2 0.04
42 6 0.12
43 3 0.06
44 7 0.15
45 12 0.25
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (42 bp):
AATAAAATATAATAAAATATAAATAATATAATAAAATATATA
Found at i:81158726 original size:19 final size:20
Alignment explanation
Indices: 81158650--81158738 Score: 69
Period size: 19 Copynumber: 4.4 Consensus size: 20
81158640 TAATATAGGG
81158650 AATAATATATAATAAAATAT-
1 AATAA-ATATAATAAAATATA
*
81158670 GAT--ATATAATAAAATATATA
1 AATAAATATAAT-AAA-ATATA
*
81158690 AATAAAATATAATGAAATATA
1 AAT-AAATATAATAAAATATA
*
81158711 AAT-AATATGATAAAATATCA
1 AATAAATATAATAAAATAT-A
*
81158731 TATAAATA
1 AATAAATA
81158739 AAAATAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
17 7 0.13
18 3 0.05
19 17 0.31
20 7 0.13
21 12 0.22
22 2 0.04
23 7 0.13
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (20 bp):
AATAAATATAATAAAATATA
Found at i:81158744 original size:30 final size:29
Alignment explanation
Indices: 81158656--81158749 Score: 104
Period size: 30 Copynumber: 3.2 Consensus size: 29
81158646 AGGGAATAAT
81158656 ATATAATAAAATATGATATATAAT-AAAAT-
1 ATATAATAAAATAT-ATATA-AATAAAAATA
*
81158685 ATATAAATAAAATATA-ATGAAATATAAATA
1 ATAT-AATAAAATATATAT-AAATAAAAATA
*
81158715 ATATGATAAAATATCATATAAATAAAAATA
1 ATATAATAAAATAT-ATATAAATAAAAATA
81158745 ATATA
1 ATATA
81158750 TACTATTTTT
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
28 5 0.09
29 19 0.35
30 29 0.53
31 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (29 bp):
ATATAATAAAATATATATAAATAAAAATA
Found at i:81158750 original size:17 final size:15
Alignment explanation
Indices: 81158654--81158751 Score: 82
Period size: 15 Copynumber: 6.5 Consensus size: 15
81158644 ATAGGGAATA
81158654 ATATAT-AATAAAAT
1 ATATATAAATAAAAT
81158668 ATGATATATAAT-AAA-
1 AT-ATATA-AATAAAAT
81158683 ATATATAAATAAAAT
1 ATATATAAATAAAAT
81158698 ATA-ATGAAATATAAAT
1 ATATAT-AAATA-AAAT
*
81158714 A-ATAT-GATAAAAT
1 ATATATAAATAAAAT
81158727 ATCATATAAATAAAAAT
1 AT-ATATAAAT-AAAAT
81158744 AATATATA
1 -ATATATA
81158752 CTATTTTTAT
Statistics
Matches: 69, Mismatches: 2, Indels: 23
0.73 0.02 0.24
Matches are distributed among these distances:
13 8 0.12
14 15 0.22
15 19 0.28
16 12 0.17
17 13 0.19
18 2 0.03
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (15 bp):
ATATATAAATAAAAT
Found at i:81163051 original size:43 final size:43
Alignment explanation
Indices: 81163004--81163249 Score: 258
Period size: 43 Copynumber: 5.7 Consensus size: 43
81162994 ATTATCCTAA
* *
81163004 CACATACAATGCATAATTAGATAAATTGAAGTATCTATACTGG
1 CACATACAATGCATCATTAGATAAACTGAAGTATCTATACTGG
* * * *
81163047 CACATACAATGCATAATCAGATAATCTGAAATATCTATACTGG
1 CACATACAATGCATCATTAGATAAACTGAAGTATCTATACTGG
** ** * * *
81163090 CACATACGGTGCATCATCGGATAAACTGAAATATCTGTACTAG
1 CACATACAATGCATCATTAGATAAACTGAAGTATCTATACTGG
* ** *
81163133 CAAATACAATGCATCATTAGATAAACCAAAGTATCTATACTAG
1 CACATACAATGCATCATTAGATAAACTGAAGTATCTATACTGG
* * * *
81163176 CATATATAGTGCATCATTGGATAAACTGAAGTATCTATACTGG
1 CACATACAATGCATCATTAGATAAACTGAAGTATCTATACTGG
* * * * *
81163219 AACATATAGTGCATCATTGGATAAGCTGAAG
1 CACATACAATGCATCATTAGATAAACTGAAG
81163250 AAAATAGACT
Statistics
Matches: 173, Mismatches: 30, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 173 1.00
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (43 bp):
CACATACAATGCATCATTAGATAAACTGAAGTATCTATACTGG
Found at i:81163157 original size:129 final size:129
Alignment explanation
Indices: 81163007--81163248 Score: 322
Period size: 129 Copynumber: 1.9 Consensus size: 129
81162997 ATCCTAACAC
*** * *
81163007 ATACAATGCATAATTAGATAAATTGAAGTATCTATACTGGCACATACAATGCATAATCAGATAAT
1 ATACAATGCATAATTAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAA
* *
81163072 CTGAAATATCTATACTGGCACATACGGTGCATCATCGGATAAACTGAAATATCTGTACTAGCAA
66 CTGAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAAATATCTGTACTAGCAA
* * * * * **
81163136 ATACAATGCATCATTAGATAAACCAAAGTATCTATACTAGCATATATAGTGCATCATTGGATAAA
1 ATACAATGCATAATTAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAA
* * * *
81163201 CTGAAGTATCTATACTGGAACATATAGTGCATCATTGGATAAGCTGAA
66 CTGAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAA
81163249 GAAAATAGAC
Statistics
Matches: 95, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
129 95 1.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (129 bp):
ATACAATGCATAATTAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAA
CTGAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAAATATCTGTACTAGCAA
Found at i:81163232 original size:86 final size:86
Alignment explanation
Indices: 81163004--81163292 Score: 267
Period size: 86 Copynumber: 3.4 Consensus size: 86
81162994 ATTATCCTAA
* * * * * * * *
81163004 CACATACAATGCATAATTAGATAAATTGAAGTATCTATACTGGCACATACAATGCATAATCAGAT
1 CACATATAGTGCATCATTGGATAAACTGAAGTATCTATACTGGAACATACAATGCATCATTAGAT
* * *
81163069 AATCTGAAA-TATCTATACTGG
66 AAAC-CAAAGTATCTATACTAG
** * * * *
81163090 CACATACGGTGCATCATCGGATAAACTGAAATATCTGTACTAGCAA-ATACAATGCATCATTAGA
1 CACATATAGTGCATCATTGGATAAACTGAAGTATCTATACT-GGAACATACAATGCATCATTAGA
81163154 TAAACCAAAGTATCTATACTAG
65 TAAACCAAAGTATCTATACTAG
* * * *
81163176 CATATATAGTGCATCATTGGATAAACTGAAGTATCTATACTGGAACATATAGTGCATCATTGGAT
1 CACATATAGTGCATCATTGGATAAACTGAAGTATCTATACTGGAACATACAATGCATCATTAGAT
* ** * ** *
81163241 AAGCTGAAGAAAATAGACTAG
66 AAACCAAAGTATCTATACTAG
* * *
81163262 CACACATAGTGCACCATTGGATAAATTGAAG
1 CACATATAGTGCATCATTGGATAAACTGAAG
81163293 AAAATTTGTT
Statistics
Matches: 164, Mismatches: 36, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
85 6 0.04
86 156 0.95
87 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (86 bp):
CACATATAGTGCATCATTGGATAAACTGAAGTATCTATACTGGAACATACAATGCATCATTAGAT
AAACCAAAGTATCTATACTAG
Found at i:81163271 original size:43 final size:43
Alignment explanation
Indices: 81163171--81163366 Score: 164
Period size: 43 Copynumber: 4.6 Consensus size: 43
81163161 AAGTATCTAT
* * * ** *
81163171 ACTAGCATATATAGTGCATCATTGGATAAACTGAAGTATCTAT
1 ACTAGCACACATAGTGCATCATTGGATAAACTGAAGAAAATAG
* * * *
81163214 ACTGGAACATATAGTGCATCATTGGATAAGCTGAAGAAAATAG
1 ACTAGCACACATAGTGCATCATTGGATAAACTGAAGAAAATAG
* * *
81163257 ACTAGCACACATAGTGCACCATTGGATAAATTGAAGAAAATTTG
1 ACTAGCACACATAGTGCATCATTGGATAAACTGAAGAAAA-TAG
* * * * * *
81163301 -TTGGCACACACAGTGCATCATCGGATAAA-TCAAAGAAAATAT
1 ACTAGCACACATAGTGCATCATTGGATAAACT-GAAGAAAATAG
*
81163343 ACT-GTCACACATAGTGCATGATTG
1 ACTAG-CACACATAGTGCATCATTG
81163367 TATATACCAA
Statistics
Matches: 122, Mismatches: 27, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
42 3 0.02
43 117 0.96
44 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (43 bp):
ACTAGCACACATAGTGCATCATTGGATAAACTGAAGAAAATAG
Found at i:81163285 original size:129 final size:129
Alignment explanation
Indices: 81163009--81163286 Score: 281
Period size: 129 Copynumber: 2.2 Consensus size: 129
81162999 CCTAACACAT
** *** * *
81163009 ACAATGCATAATTAGATAAATTGAAGTATCTATACTGGCACATACAATGCATAATCAGATAATCT
1 ACAATGCACCATTAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAACT
* * * * *
81163074 GAAATATCTATACTGGCACATACGGTGCATCATCGGATAAACTGAAATATCTGTACTAGCAAAT
66 GAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAAAAATCAGTACTAGCAAAC
* * * * * **
81163138 ACAATGCATCATTAGATAAACCAAAGTATCTATACTAGCATATATAGTGCATCATTGGATAAACT
1 ACAATGCACCATTAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAACT
* * * * *
81163203 GAAGTATCTATACTGGAACATATAGTGCATCATTGGATAAGCTGAAGAAAAT-AG-ACTAGCACA
66 GAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTG-A-AAAATCAGTACTAGCAAA
81163266 C
129 C
* * *
81163267 ATAGTGCACCATTGGATAAA
1 ACAATGCACCATTAGATAAA
81163287 TTGAAGAAAA
Statistics
Matches: 121, Mismatches: 26, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
129 115 0.95
130 2 0.02
131 4 0.03
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.27
Consensus pattern (129 bp):
ACAATGCACCATTAGATAAACCAAAGTATCTATACTAGCACATACAATGCATAATCAGATAAACT
GAAATATCTATACTGGAACATACAGTGCATCATCGGATAAACTGAAAAATCAGTACTAGCAAAC
Found at i:81170455 original size:25 final size:25
Alignment explanation
Indices: 81170427--81170478 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
81170417 TTTATTTCTC
* *
81170427 ATTTTTATATTT-TTCTTTAATTTTA
1 ATTTTAATATTTCTT-TTTAATTATA
*
81170452 ATTTTAATCTTTCTTTTTAATTATA
1 ATTTTAATATTTCTTTTTAATTATA
81170477 AT
1 AT
81170479 GTTAGTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (25 bp):
ATTTTAATATTTCTTTTTAATTATA
Found at i:81170462 original size:19 final size:19
Alignment explanation
Indices: 81170440--81170478 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
81170430 TTTATATTTT
*
81170440 TCTTTAATTTTAATTTTAA
1 TCTTTAATTTTAATTATAA
**
81170459 TCTTTCTTTTTAATTATAA
1 TCTTTAATTTTAATTATAA
81170478 T
1 T
81170479 GTTAGTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (19 bp):
TCTTTAATTTTAATTATAA
Found at i:81172844 original size:21 final size:23
Alignment explanation
Indices: 81172820--81172878 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
81172810 GTCCTTACAA
81172820 ATAGAAAATAACAAAG-TAT-TT
1 ATAGAAAATAACAAAGCTATATT
*
81172841 ATAGGAAAA-ACCTAAAGCTATATT
1 ATA-GAAAATAAC-AAAGCTATATT
81172865 -TAGAAAATAACAAA
1 ATAGAAAATAACAAA
81172879 CAACCTAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
21 5 0.16
22 17 0.55
23 7 0.23
24 2 0.06
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.24
Consensus pattern (23 bp):
ATAGAAAATAACAAAGCTATATT
Found at i:81175719 original size:17 final size:17
Alignment explanation
Indices: 81175697--81175729 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81175687 TTTTATTTAT
81175697 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
81175714 ATATTTTATTATATAT
1 ATATTTTATTACATAT
81175730 TATTCCTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:81175782 original size:14 final size:14
Alignment explanation
Indices: 81175683--81175796 Score: 74
Period size: 14 Copynumber: 7.9 Consensus size: 14
81175673 TATATTTCAT
*
81175683 TATATTTTAT-TTA
1 TATATTTTTTATTA
*
81175696 TATATTTTATTA-CA
1 TATATTTT-TTATTA
*
81175710 TATCATATTTTATTA
1 TAT-ATTTTTTATTA
*
81175725 TATATTATTCCTTATAA
1 TATATT-TT--TTATTA
*
81175742 TATCTTCCTTTTATTA
1 TATATT--TTTTATTA
*
81175758 TATA--TTATATTA
1 TATATTTTTTATTA
81175770 TATATTTTTTATTA
1 TATATTTTTTATTA
81175784 TATATATTTTTAT
1 TATAT-TTTTTAT
81175797 ATTACTTATC
Statistics
Matches: 78, Mismatches: 12, Indels: 20
0.71 0.11 0.18
Matches are distributed among these distances:
12 11 0.14
13 8 0.10
14 22 0.28
15 17 0.22
16 8 0.10
17 10 0.13
18 2 0.03
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (14 bp):
TATATTTTTTATTA
Found at i:81175787 original size:16 final size:17
Alignment explanation
Indices: 81175758--81175800 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
81175748 CCTTTTATTA
81175758 TATATTATATTATATATTT
1 TATATTATA-TATAT-TTT
*
81175777 TTTATTATATATATTTT
1 TATATTATATATATTTT
81175794 TATATTA
1 TATATTA
81175801 CTTATCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 9 0.41
18 5 0.23
19 8 0.36
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TATATTATATATATTTT
Found at i:81194693 original size:14 final size:14
Alignment explanation
Indices: 81194674--81194705 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
81194664 AGGTCATTTA
81194674 GCCCAACCAAACTG
1 GCCCAACCAAACTG
81194688 GCCCAACCAAACTG
1 GCCCAACCAAACTG
81194702 GCCC
1 GCCC
81194706 GGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:81204047 original size:22 final size:20
Alignment explanation
Indices: 81203999--81204047 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 20
81203989 TCTTAACTAC
*
81203999 TCAAATCCATAGCCAAAACA
1 TCAAATCAATAGCCAAAACA
81204019 TACCAAATCAATATGCCAAAATCA
1 T--CAAATCAATA-GCCAAAA-CA
81204043 TCAAA
1 TCAAA
81204048 CTTACATAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 1 0.04
22 13 0.54
23 7 0.29
24 3 0.12
ACGTcount: A:0.51, C:0.27, G:0.04, T:0.18
Consensus pattern (20 bp):
TCAAATCAATAGCCAAAACA
Found at i:81204854 original size:43 final size:43
Alignment explanation
Indices: 81204807--81204932 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
81204797 TATAACATAT
* ** *
81204807 CGATGCCACTGTCCTGGATAGGGTCTTACACGA-AATCA-AATAA
1 CGATGCCAATGTCCCAGACAGGGTCTTACAC-ATAATCACAAT-A
*
81204850 CGATGCCAATGTCCCAGACATGGTCTTACACATAATCACAATA
1 CGATGCCAATGTCCCAGACAGGGTCTTACACATAATCACAATA
* * **
81204893 CAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 CGATGCCAATGTCCCAGACAGGGTCTTACACATAATCACA
81204933 TCTCGGTAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.01
43 69 0.95
44 3 0.04
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCCAGACAGGGTCTTACACATAATCACAATA
Found at i:81208636 original size:24 final size:24
Alignment explanation
Indices: 81208606--81208663 Score: 91
Period size: 24 Copynumber: 2.4 Consensus size: 24
81208596 AGTAGTATAC
81208606 GAAGATGAAAGGTG-AAGAGTTAAA
1 GAAGATGAAAGGTGAAAGA-TTAAA
*
81208630 GAAGATGAAAGGTGAAAGATTAAG
1 GAAGATGAAAGGTGAAAGATTAAA
81208654 GAAGATGAAA
1 GAAGATGAAA
81208664 ATTTGAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 28 0.88
25 4 0.12
ACGTcount: A:0.52, C:0.00, G:0.33, T:0.16
Consensus pattern (24 bp):
GAAGATGAAAGGTGAAAGATTAAA
Found at i:81216587 original size:33 final size:33
Alignment explanation
Indices: 81216539--81216612 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
81216529 CTGTGTGTGA
* *
81216539 CACACGGCCTTAGCCATTTTGGGCCATGTGGGC
1 CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
* *
81216572 CACACGGGCTAAGCCATTTTGGGTCGTGTGGGC
1 CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
*
81216605 CATACGGG
1 CACACGGG
81216613 TATATGGGCC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (33 bp):
CACACGGGCTAAGCCATTTTGGGCCATGTGGGC
Found at i:81220796 original size:25 final size:25
Alignment explanation
Indices: 81220768--81220816 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
81220758 TATATGGGTG
*
81220768 TTAATTTTGGGATTTGACTTTATAA
1 TTAATTTTAGGATTTGACTTTATAA
81220793 TTAATTTTAGGATTTGACTTTATA
1 TTAATTTTAGGATTTGACTTTATA
81220817 TATTTTTCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.29, C:0.04, G:0.14, T:0.53
Consensus pattern (25 bp):
TTAATTTTAGGATTTGACTTTATAA
Found at i:81231114 original size:46 final size:46
Alignment explanation
Indices: 81231062--81231236 Score: 194
Period size: 46 Copynumber: 3.8 Consensus size: 46
81231052 TGTAACCCGC
* * *
81231062 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
81231108 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCAT
* * * *
81231158 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
* *
81231201 CCACAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
81231237 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
46 62 0.58
47 28 0.26
48 3 0.03
49 2 0.02
50 5 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCAT
Found at i:81231176 original size:93 final size:93
Alignment explanation
Indices: 81231070--81231241 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81231060 GCCCATAAGT
* * * *
81231070 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
81231135 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
81231163 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
81231228 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
81231242 CAAATATCCT
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCACAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81232556 original size:26 final size:26
Alignment explanation
Indices: 81232527--81232617 Score: 110
Period size: 26 Copynumber: 3.5 Consensus size: 26
81232517 TCAGGATATT
*
81232527 ACACATAGTGTTTAAATCCAACTCGC
1 ACACATAGTGCTTAAATCCAACTCGC
* * * * *
81232553 ACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTA-AATCCAACTCGC
81232580 ACACATAGTGCTTAAATCCAACTCGC
1 ACACATAGTGCTTAAATCCAACTCGC
*
81232606 ACACTTAGTGCT
1 ACACATAGTGCT
81232618 CAGTATCAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
26 31 0.60
27 21 0.40
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.27
Consensus pattern (26 bp):
ACACATAGTGCTTAAATCCAACTCGC
Found at i:81232582 original size:27 final size:27
Alignment explanation
Indices: 81232549--81232643 Score: 129
Period size: 27 Copynumber: 3.6 Consensus size: 27
81232539 TAAATCCAAC
81232549 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAT
* * * * *
81232576 TCGCACACATAGTGCTTA-AATCCAAC
1 TCGCACACTTAGTGCTCAGTATCAAAT
81232602 TCGCACACTTAGTGCTCAGTATCAAAT
1 TCGCACACTTAGTGCTCAGTATCAAAT
*
81232629 TTGCACACTTAGTGC
1 TCGCACACTTAGTGC
81232644 ATCCCTTAAA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.38
27 35 0.62
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (27 bp):
TCGCACACTTAGTGCTCAGTATCAAAT
Found at i:81232607 original size:53 final size:53
Alignment explanation
Indices: 81232527--81232643 Score: 207
Period size: 53 Copynumber: 2.2 Consensus size: 53
81232517 TCAGGATATT
*
81232527 ACACATAGTGTTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
1 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
*
81232580 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTTGC
1 ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
*
81232633 ACACTTAGTGC
1 ACACATAGTGC
81232644 ATCCCTTAAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (53 bp):
ACACATAGTGCTTAAATCCAACTCGCACACTTAGTGCTCAGTATCAAATTCGC
Found at i:81232819 original size:32 final size:33
Alignment explanation
Indices: 81232783--81232872 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
81232773 CTCAATCGGC
* * * *
81232783 TATATCAAACTACACCTAGATACACATTCGA-T
1 TATATCCAACTACACATATATACACATTCAACT
*
81232815 TATATCCAA-TCACACATATATAGACATTCAACT
1 TATATCCAACT-ACACATATATACACATTCAACT
81232848 T-TATCCAACTACACATATATACACA
1 TATATCCAACTACACATATATACACA
81232873 CTTAGTTATG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
31 1 0.02
32 45 0.92
33 3 0.06
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (33 bp):
TATATCCAACTACACATATATACACATTCAACT
Found at i:81238528 original size:19 final size:19
Alignment explanation
Indices: 81238486--81238528 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
81238476 TGTGTTGTTG
*
81238486 TTGTTGTTTATTTCGACTC
1 TTGTTGTTTACTTCGACTC
* * *
81238505 ATGTTGTTTACTTGGACTT
1 TTGTTGTTTACTTCGACTC
81238524 TTGTT
1 TTGTT
81238529 TATGTTCTTT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.12, C:0.12, G:0.19, T:0.58
Consensus pattern (19 bp):
TTGTTGTTTACTTCGACTC
Found at i:81238604 original size:19 final size:19
Alignment explanation
Indices: 81238580--81238623 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
81238570 TTGTTGTTGT
81238580 TGTTGTTTACTTGGACTCA
1 TGTTGTTTACTTGGACTCA
* *
81238599 TGTTGTTTACTTGGGCTGA
1 TGTTGTTTACTTGGACTCA
81238618 TGTTGT
1 TGTTGT
81238624 GTTGTTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.11, C:0.11, G:0.27, T:0.50
Consensus pattern (19 bp):
TGTTGTTTACTTGGACTCA
Found at i:81238605 original size:3 final size:3
Alignment explanation
Indices: 81238550--81238586 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
81238540 TATTATAATT
81238550 TTG TTG -TG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
81238587 TACTTGGACT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 31 0.94
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:81239707 original size:30 final size:30
Alignment explanation
Indices: 81239673--81239734 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
81239663 ACTTATATTA
81239673 TTATTAATTTTGTTATTATTTTAAAGGCAT
1 TTATTAATTTTGTTATTATTTTAAAGGCAT
* *
81239703 TTATTAATTTTGTTATTATTTTAGAGGTAT
1 TTATTAATTTTGTTATTATTTTAAAGGCAT
81239733 TT
1 TT
81239735 GCTAATTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.60
Consensus pattern (30 bp):
TTATTAATTTTGTTATTATTTTAAAGGCAT
Found at i:81239741 original size:30 final size:30
Alignment explanation
Indices: 81239677--81239741 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
81239667 ATATTATTAT
*
81239677 TAATTTTGTTATTATTTTAAAGGCATTTAT
1 TAATTTTGTTATTATTTTAAAGGCATTTAC
* * *
81239707 TAATTTTGTTATTATTTTAGAGGTATTTGC
1 TAATTTTGTTATTATTTTAAAGGCATTTAC
81239737 TAATT
1 TAATT
81239742 AAGTTGCATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.28, C:0.03, G:0.12, T:0.57
Consensus pattern (30 bp):
TAATTTTGTTATTATTTTAAAGGCATTTAC
Found at i:81241318 original size:16 final size:15
Alignment explanation
Indices: 81241299--81241337 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
81241289 ATTTTAAATT
81241299 TTATTATTCGTTTAAA
1 TTATTATTCGTTT-AA
81241315 TTATT-TATCGTTTAA
1 TTATTAT-TCGTTTAA
81241330 TTATTATT
1 TTATTATT
81241338 TAATATTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.28, C:0.05, G:0.05, T:0.62
Consensus pattern (15 bp):
TTATTATTCGTTTAA
Found at i:81241339 original size:18 final size:16
Alignment explanation
Indices: 81241291--81241334 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
81241281 TTTTTATGAT
*
81241291 TTTAAATTTTATTATTCG
1 TTTAAATTAT-TTA-TCG
81241309 TTTAAATTATTTATCG
1 TTTAAATTATTTATCG
81241325 TTT-AATTATT
1 TTTAAATTATT
81241335 ATTTAATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 7 0.28
16 6 0.24
17 3 0.12
18 9 0.36
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTATCG
Found at i:81241900 original size:41 final size:41
Alignment explanation
Indices: 81241846--81241942 Score: 176
Period size: 41 Copynumber: 2.3 Consensus size: 41
81241836 ATGATACTTG
81241846 AATTTTAATATATAATATAATGCGATAACTATGCTTTAATGT
1 AATTTT-ATATATAATATAATGCGATAACTATGCTTTAATGT
81241888 AATTTTATATATAATATAATGCGATAACTATGCTTTAATGT
1 AATTTTATATATAATATAATGCGATAACTATGCTTTAATGT
*
81241929 AATTTTATAAATAA
1 AATTTTATATATAA
81241943 ATTTTTATTT
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 48 0.89
42 6 0.11
ACGTcount: A:0.42, C:0.06, G:0.08, T:0.43
Consensus pattern (41 bp):
AATTTTATATATAATATAATGCGATAACTATGCTTTAATGT
Done.