Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 253 of 295
Found at i:81241955 original size:30 final size:31
Alignment explanation
Indices: 81241921--81241984 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 31
81241911 ATAACTATGC
* *
81241921 TTTAATGTAATTTTATAAAT-AAATTTTTAT
1 TTTAATGTAATTATACAAATAAAATTTTTAT
* *
81241951 TTTAATTTAATTATACATATAAAATTTTTAT
1 TTTAATGTAATTATACAAATAAAATTTTTAT
81241982 TTT
1 TTT
81241985 TATTTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 16 0.55
31 13 0.45
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (31 bp):
TTTAATGTAATTATACAAATAAAATTTTTAT
Found at i:81242339 original size:7 final size:8
Alignment explanation
Indices: 81242306--81242338 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
81242296 TTTTTGGATT
81242306 AATTTT-A
1 AATTTTAA
81242313 AATTTTAAA
1 AATTTT-AA
81242322 AATTTTAA
1 AATTTTAA
81242330 AATTTTAA
1 AATTTTAA
81242338 A
1 A
81242339 TAAAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 6 0.25
8 11 0.46
9 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:81249848 original size:30 final size:29
Alignment explanation
Indices: 81249809--81249865 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
81249799 TACGACCAGA
*
81249809 CACAGGGGCATGTGGCCAAGCCGTGTGAGC
1 CACACGGGCATGTGG-CAAGCCGTGTGAGC
*
81249839 CACACGGGCATGTGGCAGGCCGTGTGA
1 CACACGGGCATGTGGCAAGCCGTGTGA
81249866 TCGGCCGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.19, C:0.26, G:0.40, T:0.14
Consensus pattern (29 bp):
CACACGGGCATGTGGCAAGCCGTGTGAGC
Found at i:81252906 original size:26 final size:26
Alignment explanation
Indices: 81252877--81252984 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
81252867 TGGTACAAAT
*
81252877 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* * *
81252903 TGATAATGGATTAGATAAATATTCAA
1 TGATAATGGGTTAGGTAAATATTCCA
81252929 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
* *
81252955 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATATTCCA
81252981 TGAT
1 TGAT
81252985 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATATTCCA
Found at i:81255686 original size:47 final size:47
Alignment explanation
Indices: 81255633--81255851 Score: 211
Period size: 47 Copynumber: 4.7 Consensus size: 47
81255623 GAGGTGCTAC
* *
81255633 ATGCCATGTCCCAGACACGGTCTTACACTAGCTCAT-GTCTCATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-ATCGTCTCATGCCG
* *
81255680 ATGCCATGTCCCAGACATGGTCTTACACT-GACTATCATCTCGTAGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTATCGTCTCAT-GCCG
*
81255728 ATG-CATGTCCCAGACAT-ATCTTACACTAG-TACTCGTCTCGATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTA-TCGTCTC-ATGCCG
* * * * * * *
81255774 ATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGT-CTCAT-GCCG
81255822 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
81255852 CCATAATAAC
Statistics
Matches: 144, Mismatches: 17, Indels: 23
0.78 0.09 0.12
Matches are distributed among these distances:
45 2 0.01
46 37 0.26
47 78 0.54
48 25 0.17
49 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTATCGTCTCATGCCG
Found at i:81255776 original size:94 final size:92
Alignment explanation
Indices: 81255637--81255851 Score: 281
Period size: 94 Copynumber: 2.3 Consensus size: 92
81255627 TGCTACATGC
* * *
81255637 CATGTCCCAGACACGGTCTTACACTAGCTCATGTCTCATGTCGATGCCATGTCCCAGACATGGTC
1 CATGTCCCAGACA-TGTCTTACACTAGCTCA-GTCTCATGCCGATGCCATATCCCAGACATGGTC
*
81255702 TTACACTGACTATCAT-CTCGTAGCCGATG
64 TTACACTGACTATCATAAT-GTAGCCGATG
*
81255731 CATGTCCCAGACATATCTTACACTAGTACTC-GTCTCGATGCCGATGCCATATCCCAGACATGGT
1 CATGTCCCAGACATGTCTTACACTAG--CTCAGTCTC-ATGCCGATGCCATATCCCAGACATGGT
* * * *
81255795 CTTACACTGGCTCTCATAATGTGGCTGATG
63 CTTACACTGACTATCATAATGTAGCCGATG
81255825 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
81255852 CCATAATAAC
Statistics
Matches: 107, Mismatches: 10, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
92 1 0.01
93 16 0.15
94 86 0.80
95 4 0.04
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (92 bp):
CATGTCCCAGACATGTCTTACACTAGCTCAGTCTCATGCCGATGCCATATCCCAGACATGGTCTT
ACACTGACTATCATAATGTAGCCGATG
Found at i:81258307 original size:3 final size:3
Alignment explanation
Indices: 81258290--81258324 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
81258280 TTTTTTTTTC
*
81258290 CTT CTTT CTT TTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
81258325 CCTCAACCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:81259524 original size:3 final size:3
Alignment explanation
Indices: 81259516--81259565 Score: 91
Period size: 3 Copynumber: 16.3 Consensus size: 3
81259506 TGGGTTGAAG
81259516 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA G-AA
81259562 GAA G
1 GAA G
81259566 GGGGAAAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 43 0.93
4 3 0.07
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:81263040 original size:30 final size:30
Alignment explanation
Indices: 81263004--81263092 Score: 106
Period size: 30 Copynumber: 3.0 Consensus size: 30
81262994 CTTGATCAAC
***
81263004 AGATAGCCACAAAGTTTTCCATACATCATT
1 AGATAGCCACAAAGGCATCCATACATCATT
*
81263034 AGATAGCCATAAAGGCATCCATACATCATT
1 AGATAGCCACAAAGGCATCCATACATCATT
* * * *
81263064 AAATAACCACAAAGGCGTCCAAACATCAT
1 AGATAGCCACAAAGGCATCCATACATCAT
81263093 ACGCTAAACT
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (30 bp):
AGATAGCCACAAAGGCATCCATACATCATT
Found at i:81263210 original size:29 final size:29
Alignment explanation
Indices: 81263176--81263246 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
81263166 CAAAAGCTTC
** *
81263176 CACATATAACATATTCTGCCACTAGGGCT
1 CACATATAACATATTCCACCACAAGGGCT
* *
81263205 TACATATAGCATATTCCACCACAAGGGCT
1 CACATATAACATATTCCACCACAAGGGCT
81263234 CACATATAACATA
1 CACATATAACATA
81263247 GAATAGCCAC
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.37, C:0.27, G:0.11, T:0.25
Consensus pattern (29 bp):
CACATATAACATATTCCACCACAAGGGCT
Found at i:81265816 original size:16 final size:17
Alignment explanation
Indices: 81265785--81265818 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81265775 AGATATAATG
81265785 TTAGAAACTAAAAAAAT
1 TTAGAAACTAAAAAAAT
81265802 TTAGAAACTAAAAAAAT
1 TTAGAAACTAAAAAAAT
81265819 AAATTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
TTAGAAACTAAAAAAAT
Found at i:81265917 original size:33 final size:31
Alignment explanation
Indices: 81265865--81265929 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 31
81265855 ATTATACATG
*
81265865 AAATATATATTTTAAAATTTTAAATATAATGAT
1 AAATATATATTTGAAAA-TTT-AATATAATGAT
81265898 AAATAT-TATTTGAATAATTTAATATAATGAT
1 AAATATATATTTGAA-AATTTAATATAATGAT
81265929 A
1 A
81265930 TTTAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 12 0.40
32 10 0.33
33 8 0.27
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.45
Consensus pattern (31 bp):
AAATATATATTTGAAAATTTAATATAATGAT
Found at i:81268279 original size:9 final size:9
Alignment explanation
Indices: 81268179--81268458 Score: 83
Period size: 9 Copynumber: 29.6 Consensus size: 9
81268169 AAAACTAAAA
81268179 AAAAACTTAT
1 AAAAA-TTAT
*
81268189 AAAAAATCAT
1 -AAAAATTAT
*
81268199 AAAAAGTAT
1 AAAAATTAT
*
81268208 CAAAA-TAT
1 AAAAATTAT
81268216 AAAAATTATT
1 AAAAATTA-T
* *
81268226 ATATATTA-
1 AAAAATTAT
81268234 AAAAA-TATT
1 AAAAATTA-T
*
81268243 AAAAAATAT
1 AAAAATTAT
*
81268252 GAAAATTGAT
1 AAAAATT-AT
*
81268262 ATGAAATTAT
1 A-AAAATTAT
81268272 AAAAATTAT
1 AAAAATTAT
*
81268281 -AAAACTAT
1 AAAAATTAT
81268289 ATAAAATCTA-
1 A-AAAAT-TAT
81268299 ATAAAATCTA-
1 A-AAAAT-TAT
81268309 ATAAAATCTA-
1 A-AAAAT-TAT
*
81268319 ATAAATTAT
1 AAAAATTAT
*
81268328 AAAAAATAT
1 AAAAATTAT
* * *
81268337 AGAACTAAT
1 AAAAATTAT
*
81268346 AAAACATTTTT
1 AAAA-A-TTAT
81268357 AAAAATTTTAT
1 AAAAA--TTAT
*
81268368 AAAAA-CAT
1 AAAAATTAT
*
81268376 ACTAAAATTCT
1 A--AAAATTAT
81268387 ATAAAATTAAT
1 A-AAAATT-AT
*
81268398 AAAAAATAT
1 AAAAATTAT
81268407 AAAAA-TAT
1 AAAAATTAT
* *
81268415 TAAAAGTAT
1 AAAAATTAT
*
81268424 TAAAATTGAT
1 AAAAATT-AT
**
81268434 ATAAGCTTAT
1 A-AAAATTAT
81268444 AAAAATTATT
1 AAAAATTA-T
81268454 AAAAA
1 AAAAA
81268459 GTCATTATAA
Statistics
Matches: 207, Mismatches: 40, Indels: 45
0.71 0.14 0.15
Matches are distributed among these distances:
7 2 0.01
8 29 0.14
9 71 0.34
10 70 0.34
11 35 0.17
ACGTcount: A:0.61, C:0.05, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATTAT
Found at i:81268304 original size:20 final size:20
Alignment explanation
Indices: 81268279--81268323 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
81268269 TATAAAAATT
81268279 ATAAAA-CTATATAAAATCTA
1 ATAAAATCTA-ATAAAATCTA
81268299 ATAAAATCTAATAAAATCTA
1 ATAAAATCTAATAAAATCTA
81268319 ATAAA
1 ATAAA
81268324 TTATAAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 21 0.88
21 3 0.12
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAAATCTAATAAAATCTA
Found at i:81268893 original size:9 final size:9
Alignment explanation
Indices: 81268876--81269103 Score: 87
Period size: 9 Copynumber: 24.6 Consensus size: 9
81268866 TTTATGATTT
81268876 TTTTATATAA
1 TTTT-TATAA
81268886 TTTTTATAA
1 TTTTTATAA
*
81268895 GTTTATATCAA
1 -TTTTTAT-AA
* *
81268906 TTTTAATAT
1 TTTTTATAA
*
81268915 TTTTTATTAT
1 TTTTTA-TAA
*
81268925 TTTTTAAGAA
1 TTTTT-ATAA
* *
81268935 TTCTAATACA
1 TTTTTATA-A
81268945 TTTTT-TAA
1 TTTTTATAA
*
81268953 TTTTGACT-A
1 TTTTTA-TAA
*
81268962 TTTTAAATAA
1 TTTT-TATAA
*
81268972 GTTTTATTAA
1 TTTTTA-TAA
*
81268982 -ATTTATAA
1 TTTTTATAA
* *
81268990 TTTATTAGAT
1 TTT-TTATAA
81269000 TTTTTAT-A
1 TTTTTATAA
81269008 TTTTTATAA
1 TTTTTATAA
*
81269017 TATTTATAA
1 TTTTTATAA
81269026 GTTTTTTTATAA
1 ---TTTTTATAA
*
81269038 TTTTGATAA
1 TTTTTATAA
*
81269047 GTTTATATTAA
1 -TTTTTA-TAA
*
81269058 TTTTAAT-A
1 TTTTTATAA
81269066 -TTTTATAA
1 TTTTTATAA
*
81269074 TATTTA-ATA
1 TTTTTATA-A
81269083 TTTTTAT--
1 TTTTTATAA
81269090 TTTTTATAA
1 TTTTTATAA
81269099 TTTTT
1 TTTTT
81269104 TTCTTATTTT
Statistics
Matches: 162, Mismatches: 32, Indels: 49
0.67 0.13 0.20
Matches are distributed among these distances:
7 12 0.07
8 18 0.11
9 63 0.39
10 55 0.34
11 6 0.04
12 8 0.05
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:81268901 original size:19 final size:19
Alignment explanation
Indices: 81268877--81269061 Score: 63
Period size: 19 Copynumber: 9.7 Consensus size: 19
81268867 TTATGATTTT
81268877 TTTATATAATTTTTATAAG
1 TTTATATAATTTTTATAAG
* *
81268896 TTTATATCAATTTTAAT-AT
1 TTTATAT-AATTTTTATAAG
* *
81268915 TTTTTATTATTTTT-TAAG
1 TTTATATAATTTTTATAAG
81268933 AATTCTA-ATACATTTTT-TAA-
1 --TT-TATATA-ATTTTTATAAG
*
81268953 TTT-TGACT-ATTTTAAATAAG
1 TTTAT-A-TAATTTT-TATAAG
*
81268973 TTT-TATTAA-ATTTATAA-
1 TTTATA-TAATTTTTATAAG
81268990 TTTAT-TAGATTTTT-TATA-
1 TTTATATA-ATTTTTATA-AG
* *
81269008 TTTTTATAATATTTATAAG
1 TTTATATAATTTTTATAAG
* *
81269027 TTTTTTTATAATTTTGATAAG
1 --TTTATATAATTTTTATAAG
81269048 TTTATATTAATTTT
1 TTTATA-TAATTTT
81269062 AATATTTTAT
Statistics
Matches: 125, Mismatches: 18, Indels: 45
0.66 0.10 0.24
Matches are distributed among these distances:
16 2 0.02
17 13 0.10
18 28 0.22
19 31 0.25
20 24 0.19
21 27 0.22
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (19 bp):
TTTATATAATTTTTATAAG
Found at i:81268910 original size:11 final size:10
Alignment explanation
Indices: 81268876--81269072 Score: 54
Period size: 10 Copynumber: 20.7 Consensus size: 10
81268866 TTTATGATTT
81268876 TTTTATATAA
1 TTTTATATAA
81268886 TTTT-TATAA
1 TTTTATATAA
*
81268895 GTTTATATCAA
1 TTTTATAT-AA
81268906 TTTTA-AT-A
1 TTTTATATAA
* *
81268914 TTTTTTATTA
1 TTTTATATAA
* *
81268924 TTTTTTAAGAA
1 TTTTAT-ATAA
*
81268935 TTCTA-ATACA
1 TTTTATATA-A
81268945 TTTT-T-TAA
1 TTTTATATAA
*
81268953 TTTTGA-CT-A
1 TTTT-ATATAA
*
81268962 TTTTAAATAA
1 TTTTATATAA
81268972 GTTTTAT-TAA
1 -TTTTATATAA
*
81268982 -ATT-TATAA
1 TTTTATATAA
81268990 -TTTAT-TAGA
1 TTTTATATA-A
*
81268999 TTTTTTAT-A
1 TTTTATATAA
81269008 TTTT-TATAA
1 TTTTATATAA
*
81269017 TATTTATA-AGT
1 T-TTTATATA-A
*
81269028 TTTTTTATAA
1 TTTTATATAA
*
81269038 TTTT-GATAA
1 TTTTATATAA
*
81269047 GTTTATATTAA
1 TTTTATA-TAA
81269058 TTTTA-AT-A
1 TTTTATATAA
81269066 TTTTATA
1 TTTTATA
81269073 ATATTTAATA
Statistics
Matches: 140, Mismatches: 21, Indels: 53
0.65 0.10 0.25
Matches are distributed among these distances:
7 1 0.01
8 29 0.21
9 38 0.27
10 44 0.31
11 28 0.20
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (10 bp):
TTTTATATAA
Found at i:81269021 original size:57 final size:57
Alignment explanation
Indices: 81268968--81269078 Score: 126
Period size: 57 Copynumber: 2.0 Consensus size: 57
81268958 ACTATTTTAA
*
81268968 ATAAGTTTTATTA-AA-TTT-ATAA-TT-TATTAGATTTTTTATATTTTTATAATA-TTT
1 ATAAGTTTTATTATAATTTTGATAAGTTATATTA-A-TTTTAATA-TTTTATAATATTTT
*
81269022 ATAAGTTTTTTTATAATTTTGATAAGTTTATATTAATTTTAATATTTTATAATATTT
1 ATAAGTTTTATTATAATTTTGATAAG-TTATATTAATTTTAATATTTTATAATATTT
81269079 AATATTTTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
54 12 0.25
55 2 0.04
56 3 0.06
57 14 0.29
58 9 0.19
59 3 0.06
60 5 0.10
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (57 bp):
ATAAGTTTTATTATAATTTTGATAAGTTATATTAATTTTAATATTTTATAATATTTT
Found at i:81269034 original size:21 final size:21
Alignment explanation
Indices: 81269008--81269050 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 21
81268998 ATTTTTTATA
81269008 TTTTTATAATATTT-ATAAGTT
1 TTTTTATAAT-TTTGATAAGTT
81269029 TTTTTATAATTTTGATAAGTT
1 TTTTTATAATTTTGATAAGTT
81269050 T
1 T
81269051 ATATTAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (21 bp):
TTTTTATAATTTTGATAAGTT
Found at i:81269049 original size:75 final size:72
Alignment explanation
Indices: 81268968--81269105 Score: 172
Period size: 75 Copynumber: 1.9 Consensus size: 72
81268958 ACTATTTTAA
* *
81268968 ATAAGTTT-TATTAAATTT-ATAATTTATTAGATTTTTTATATTTTTATAATATTTATAAGTTTT
1 ATAAGTTTATATTAAATTTAATAATTTA-TA-ATATTTAATATTTTTAT--TATTTATAA-TTTT
81269031 TTTATAATTTTG
61 TTTATAATTTTG
* * *
81269043 ATAAGTTTATATTAATTTTAATATTTTATAATATTTAATATTTTTATTTTTTATAATTTTTTT
1 ATAAGTTTATATTAAATTTAATAATTTATAATATTTAATATTTTTATTATTTATAATTTTTTT
81269106 CTTATTTTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
72 7 0.12
73 8 0.14
75 23 0.41
76 11 0.20
77 7 0.12
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (72 bp):
ATAAGTTTATATTAAATTTAATAATTTATAATATTTAATATTTTTATTATTTATAATTTTTTTAT
AATTTTG
Found at i:81269072 original size:19 final size:17
Alignment explanation
Indices: 81269048--81269095 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
81269038 TTTTGATAAG
81269048 TTTATATTAATTTTAATAT
1 TTTATATT-A-TTTAATAT
*
81269067 TTTATAATATTTAATAT
1 TTTATATTATTTAATAT
*
81269084 TTT-TATTTTTTA
1 TTTATATTATTTA
81269096 TAATTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 7 0.27
17 11 0.42
18 1 0.04
19 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTTAATAT
Found at i:81272298 original size:22 final size:22
Alignment explanation
Indices: 81272270--81272325 Score: 87
Period size: 22 Copynumber: 2.5 Consensus size: 22
81272260 AATATTAGCT
*
81272270 TCCATTG-ATGCCCCAAAAGAAC
1 TCCATTGCA-GCCACAAAAGAAC
81272292 TCCATTGCAGCCACAAAAGAAC
1 TCCATTGCAGCCACAAAAGAAC
81272314 TCCATTGCAGCC
1 TCCATTGCAGCC
81272326 TTTCACTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.34, C:0.34, G:0.14, T:0.18
Consensus pattern (22 bp):
TCCATTGCAGCCACAAAAGAAC
Found at i:81275303 original size:37 final size:37
Alignment explanation
Indices: 81275262--81275342 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 37
81275252 TTGGTAACGG
*** *
81275262 TAACAATATCAGTGGTGTGCTTAACATGCTTTCGGTT
1 TAACAATATCAGTGACATGCTTAACATGCTTTCGATT
* * * *
81275299 TAACAATTTTAGTGACATGTTTAACATGCTTTTGATT
1 TAACAATATCAGTGACATGCTTAACATGCTTTCGATT
81275336 TAACAAT
1 TAACAAT
81275343 TTTTGTATCA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.16, T:0.41
Consensus pattern (37 bp):
TAACAATATCAGTGACATGCTTAACATGCTTTCGATT
Found at i:81278759 original size:12 final size:13
Alignment explanation
Indices: 81278736--81278764 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
81278726 CAAATGAATT
81278736 ATTTCTCATTTTC
1 ATTTCTCATTTTC
81278749 ATTTC-CATTTTC
1 ATTTCTCATTTTC
81278761 ATTT
1 ATTT
81278765 TTAAGAGACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.17, C:0.21, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTCTCATTTTC
Found at i:81280080 original size:31 final size:31
Alignment explanation
Indices: 81280042--81280100 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
81280032 GTGCAATTCA
81280042 TATTCGAGTTAAACCAAAAAACTTAATTTTT
1 TATTCGAGTTAAACCAAAAAACTTAATTTTT
* * * *
81280073 TATTCGAGTTGATCCGAATAACTTAATT
1 TATTCGAGTTAAACCAAAAAACTTAATT
81280101 AACTCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (31 bp):
TATTCGAGTTAAACCAAAAAACTTAATTTTT
Found at i:81287374 original size:33 final size:31
Alignment explanation
Indices: 81287337--81287414 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
81287327 CCATGTTAAT
* * *
81287337 TGTCCTAGTGGACTATCTTTTTTCTGTGTTTAC
1 TGTCCTAGTAGACTATC--TCTTCTGTGATTAC
*
81287370 TGTCCTTGTAGACTATCTCTTCTGTGATTAC
1 TGTCCTAGTAGACTATCTCTTCTGTGATTAC
*
81287401 TGTCCTAGCAGACT
1 TGTCCTAGTAGACT
81287415 GTCTTTGTCG
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
31 24 0.62
33 15 0.38
ACGTcount: A:0.15, C:0.22, G:0.18, T:0.45
Consensus pattern (31 bp):
TGTCCTAGTAGACTATCTCTTCTGTGATTAC
Found at i:81293449 original size:21 final size:21
Alignment explanation
Indices: 81293419--81293467 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
81293409 TTTGTGGTTA
*
81293419 ATGTTGAGTAATATGCAAATT
1 ATGTTTAGTAATATGCAAATT
81293440 ATGTTTAGTAATATGCAAATT
1 ATGTTTAGTAATATGCAAATT
81293461 ATGTTTA
1 ATGTTTA
81293468 CTACTTGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.16, T:0.43
Consensus pattern (21 bp):
ATGTTTAGTAATATGCAAATT
Found at i:81293665 original size:46 final size:46
Alignment explanation
Indices: 81293611--81293783 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
81293601 TGGTTGAGCA
*
81293611 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
81293657 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
81293704 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
81293750 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81293784 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81293767 original size:93 final size:93
Alignment explanation
Indices: 81293608--81293778 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81293598 GGATGGTTGA
* *
81293608 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
81293673 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
81293701 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
*
81293766 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
81293779 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81294045 original size:19 final size:20
Alignment explanation
Indices: 81294008--81294045 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81293998 ATAAGGTGGT
81294008 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
81294028 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
81294046 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:81297547 original size:26 final size:26
Alignment explanation
Indices: 81297491--81297552 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
81297481 TTTACCTTCA
*
81297491 GTAAAATTTTGATGATTTTAACATCG
1 GTAAAATTTTGACGATTTTAACATCG
* *
81297517 ATAAAATTTTGACGATTTTATATAT-G
1 GTAAAATTTTGACGATTTTA-ACATCG
81297543 GTAAAATTTT
1 GTAAAATTTT
81297553 TTGAAAATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 28 0.90
27 3 0.10
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (26 bp):
GTAAAATTTTGACGATTTTAACATCG
Found at i:81299344 original size:40 final size:40
Alignment explanation
Indices: 81299295--81299535 Score: 405
Period size: 40 Copynumber: 6.1 Consensus size: 40
81299285 CGGATGTAAC
* *
81299295 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
81299335 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
81299375 AACCCGCACGAATGCCTTCGGGAC-TAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* * *
81299414 AACCCACACGAATGCCTTCGGGACTTAAACCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
81299454 AACCCGCACGAATGCCTTCGGGAC-TAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
81299493 AACCCACACGAATGCCTTCGGGACTTAACCCGATTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
81299533 AAC
1 AAC
81299536 TAGCAAAATT
Statistics
Matches: 189, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
39 74 0.39
40 115 0.61
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:81299552 original size:79 final size:79
Alignment explanation
Indices: 81299295--81299535 Score: 428
Period size: 79 Copynumber: 3.0 Consensus size: 79
81299285 CGGATGTAAC
* * *
81299295 AACCAGCACGAATGCCTTCGGGACTTAGCCCGGTTATAATAACCCGCACGAATGCCTTCGGGACT
1 AACCCGCACGAATGCCTTCGGGAC-TAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACT
*
81299360 TAACCCGGTTATAAT
65 TAACCCGATTATAAT
81299375 AACCCGCACGAATGCCTTCGGGACTAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
1 AACCCGCACGAATGCCTTCGGGACTAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
*
81299440 AAACCGATTATAAT
66 AACCCGATTATAAT
81299454 AACCCGCACGAATGCCTTCGGGACTAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
1 AACCCGCACGAATGCCTTCGGGACTAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
81299519 AACCCGATTATAAT
66 AACCCGATTATAAT
81299533 AAC
1 AAC
81299536 TAGCAAAATT
Statistics
Matches: 155, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
79 132 0.85
80 23 0.15
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (79 bp):
AACCCGCACGAATGCCTTCGGGACTAACCCGGTTATAATAACCCACACGAATGCCTTCGGGACTT
AACCCGATTATAAT
Found at i:81307763 original size:40 final size:40
Alignment explanation
Indices: 81307703--81307883 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
81307693 CGAATGTAAC
* * *
81307703 AACCAGCACGAATGCCTTTGGGACTTAGCCCGATTATAAT
1 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
81307743 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
* *
81307783 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTGATAAT
1 AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
** **
81307823 AACTAGCAC-AATTGCCTTT-GGATCTTAGTCCGGTTATAAT
1 AACCCGCACGAA-TGCCTTTGGGA-CTTAACCCGGTTATAAT
81307863 AACCCGCACGAATGCCTTTGG
1 AACCCGCACGAATGCCTTTGG
81307884 ATCTTAGTCC
Statistics
Matches: 124, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 5 0.04
40 116 0.94
41 3 0.02
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTTGGGACTTAACCCGGTTATAAT
Found at i:81309426 original size:13 final size:13
Alignment explanation
Indices: 81309410--81309437 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81309400 TTTATTATTT
81309410 TTAACACAAAATA
1 TTAACACAAAATA
81309423 TTAACACAAAATA
1 TTAACACAAAATA
81309436 TT
1 TT
81309438 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:81313108 original size:46 final size:46
Alignment explanation
Indices: 81313041--81313134 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
81313031 TCATCAAATA
*
81313041 TATATTTCCCACCTCGATCAGATTGAAGTGCCTTTATGGGTAAACT
1 TATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACT
81313087 TATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACT
1 TATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACT
81313133 TA
1 TA
81313135 GTTGTTTCTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (46 bp):
TATATTTCCCACCTCAATCAGATTGAAGTGCCTTTATGGGTAAACT
Found at i:81317227 original size:42 final size:42
Alignment explanation
Indices: 81317176--81317293 Score: 146
Period size: 43 Copynumber: 2.8 Consensus size: 42
81317166 TGAGATTACG
*
81317176 TGTAAGACCATATCTGGGATATGGCATCGATATAAGATTTCC
1 TGTAAGACCATATCTGGGATATGGCATCGATATAAGATTTCA
* * * * *
81317218 TTTAAGACCATAGCTGGGCTATTGGCATCAATATGAGATTTCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATAAGATTTCA
* * *
81317261 TGTAAGACTATATCTAGGATATGGCATTGATAT
1 TGTAAGACCATATCTGGGATATGGCATCGATAT
81317294 GGTACTATGT
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
42 28 0.45
43 34 0.55
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATAAGATTTCA
Found at i:81318032 original size:15 final size:15
Alignment explanation
Indices: 81318004--81318037 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
81317994 GTAATTGATG
*
81318004 TGTGGATGACTTGGT
1 TGTGGATGAATTGGT
*
81318019 TGTGGTTGAATTGGT
1 TGTGGATGAATTGGT
81318034 TGTG
1 TGTG
81318038 TGCATATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.41, T:0.44
Consensus pattern (15 bp):
TGTGGATGAATTGGT
Found at i:81324341 original size:26 final size:26
Alignment explanation
Indices: 81324312--81324419 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
81324302 TGGTACAAAT
81324312 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
81324338 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81324364 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
81324390 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
81324416 TGAT
1 TGAT
81324420 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:81326105 original size:53 final size:54
Alignment explanation
Indices: 81326015--81326157 Score: 227
Period size: 53 Copynumber: 2.7 Consensus size: 54
81326005 TGGAGGAAGC
*
81326015 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATAGCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
*
81326069 GTCCTGGTGGCTATGCCA-AATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
* *
81326122 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
81326158 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
53 55 0.66
54 28 0.34
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATAGCT
Found at i:81326153 original size:32 final size:27
Alignment explanation
Indices: 81326018--81326157 Score: 171
Period size: 27 Copynumber: 5.2 Consensus size: 27
81326008 AGGAAGCGTC
* *
81326018 CTGGTGGCTATGCCACA-ATTATCTAAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
81326045 CTGGTGGCTCTGCCACATATAGCTG-T
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
81326071 CCTGGTGGCTATGCCAAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACATATATCTGAT
*
81326098 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
81326125 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
81326152 CTGGTG
1 CTGGTG
81326158 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
26 29 0.30
27 68 0.69
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:81327686 original size:42 final size:42
Alignment explanation
Indices: 81327577--81327687 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
81327567 TGAGATTACG
* * ** *
81327577 TGTAAGACCACATTTGAGATATGGCATCAGTATGAGATTTCG
1 TGTAAGACCATATTTGGGATATGGCATCAGTATGAGATCCCA
* **
81327619 TGTAAGATCATAGCTGGGCAT-TGGCATC-GATATGAGATCCCA
1 TGTAAGACCATATTTGGG-ATATGGCATCAG-TATGAGATCCCA
81327661 TGTAAGACCATATTTGGGATATGGCAT
1 TGTAAGACCATATTTGGGATATGGCAT
81327688 TGGTATGGTA
Statistics
Matches: 55, Mismatches: 11, Indels: 6
0.76 0.15 0.08
Matches are distributed among these distances:
41 3 0.05
42 50 0.91
43 2 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (42 bp):
TGTAAGACCATATTTGGGATATGGCATCAGTATGAGATCCCA
Found at i:81340102 original size:94 final size:91
Alignment explanation
Indices: 81339889--81340220 Score: 327
Period size: 94 Copynumber: 3.6 Consensus size: 91
81339879 GCAATCTATT
* *
81339889 AGGACATTAAACATGGGGCTACATGTGTAAGACCATA-TTTCAGCTATGGCAACATGGGGAGTT-
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTT-AGCTATGGCAACATGGGGAGTTC
* * * *
81339952 -TA-CAA-TAAACAATGGATAGTCTATC
65 ATAGGAAGTAAA-AATGGGTAGTCCACC
* * * * *
81339977 AGGACCTTAAACATGAGGTTACATGTGTAAGACCATATCTTAGTTATGGCAACATGGAGAGTTCG
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAACATGGGGAGTTC-
*
81340042 ATAGGATAGTAAATATGGGGTAGTCCACC
65 ATAGGA-AGTAAAAAT-GGGTAGTCCACC
* * *
81340071 AGGACATTAAACATGTGGTTACATGTGTAAGACTATAGCTT-GACTATGACAACATGGGGAG-TC
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAG-CTATGGCAACATGGGGAGTTC
* * *
81340134 TATCGAGACAGTAAACATAAGGTAGTCCACC
65 -ATAG-GA-AGTAAAAAT-GGGTAGTCCACC
* * * *
81340165 AAGACATTAAATAAGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAGCATG
1 AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAACATG
81340221 TGATGACCGC
Statistics
Matches: 202, Mismatches: 31, Indels: 16
0.81 0.12 0.06
Matches are distributed among these distances:
88 54 0.27
89 2 0.01
91 2 0.01
92 1 0.00
93 9 0.04
94 133 0.66
95 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.26
Consensus pattern (91 bp):
AGGACATTAAACATGGGGTTACATGTGTAAGACCATAGCTTAGCTATGGCAACATGGGGAGTTCA
TAGGAAGTAAAAATGGGTAGTCCACC
Found at i:81340859 original size:17 final size:17
Alignment explanation
Indices: 81340837--81340870 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81340827 GTATGGGTCC
81340837 ACCAAAGAAATGAGTGT
1 ACCAAAGAAATGAGTGT
81340854 ACCAAAGAAATGAGTGT
1 ACCAAAGAAATGAGTGT
81340871 GTTATTCAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.12, G:0.24, T:0.18
Consensus pattern (17 bp):
ACCAAAGAAATGAGTGT
Found at i:81345165 original size:80 final size:79
Alignment explanation
Indices: 81345071--81345373 Score: 324
Period size: 80 Copynumber: 3.8 Consensus size: 79
81345061 AATAATATCC
* * * * *
81345071 GTTTCGAGATTGATTCCTGCCGTACAACAAGTTTACTCAAAATTTTGATTTTATTTCCAAAAACG
1 GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATTC-AAATTTTGATTTTATTTCCAAAAACG
* *
81345136 AGTAAATTC-AAATTT
65 AGTAAA-ACAAAATCT
* *
81345151 GTTTCGAGATTGATTCCTGTTGTTCAACGATTTTATTCCAAATTTTGATTTTATTTCCAAAAATG
1 GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATT-CAAATTTTGATTTTATTTCCAAAAACG
81345216 AGTAAAACAAAATCT
65 AGTAAAACAAAATCT
* * * *
81345231 GTTAC-AGGATTGATTTCTGCTGTTCAATGATTTTATTTCGAATTTTGATTTTATTTCCAAAAAC
1 GTTTCGA-GATTGATTCCTGCTGTTCAACGATTTTA-TTCAAATTTTGATTTTATTTCCAAAAAC
* * *
81345295 AAGTAAAATAAAATCC
64 GAGTAAAACAAAATCT
* * * ** *
81345311 GTTTTGGGATTGACTCCTATTGTTCCACGATTTTATTCCAAATTTTGATTTT-TTTGCCAAAAA
1 GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATT-CAAATTTTGATTTTATTT-CCAAAAA
81345374 TGAAAACTTA
Statistics
Matches: 188, Mismatches: 28, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
79 7 0.04
80 178 0.95
81 3 0.02
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (79 bp):
GTTTCGAGATTGATTCCTGCTGTTCAACGATTTTATTCAAATTTTGATTTTATTTCCAAAAACGA
GTAAAACAAAATCT
Found at i:81351973 original size:30 final size:29
Alignment explanation
Indices: 81351939--81352000 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
81351929 ACTTAACAAG
*
81351939 CAAATATATCTAAAATAATAACAAAATTAA
1 CAAATACATCTAAAATAATAA-AAAATTAA
* * *
81351969 CAAATGCCTTTAAAATAATAAAAAATTAA
1 CAAATACATCTAAAATAATAAAAAATTAA
81351998 CAA
1 CAA
81352001 TAAAATAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.61, C:0.11, G:0.02, T:0.26
Consensus pattern (29 bp):
CAAATACATCTAAAATAATAAAAAATTAA
Found at i:81352055 original size:22 final size:22
Alignment explanation
Indices: 81352030--81352075 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
81352020 TATCCAAACA
81352030 ATAACAACAAAATAATAGCAAC
1 ATAACAACAAAATAATAGCAAC
* ** *
81352052 ATAATAGTAAAATAGTAGCAAC
1 ATAACAACAAAATAATAGCAAC
81352074 AT
1 AT
81352076 GGGGAGAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.59, C:0.13, G:0.09, T:0.20
Consensus pattern (22 bp):
ATAACAACAAAATAATAGCAAC
Found at i:81365772 original size:16 final size:17
Alignment explanation
Indices: 81365741--81365772 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
81365731 CCAAGCTATA
81365741 ATCTTGGTGAATTTTGC
1 ATCTTGGTGAATTTTGC
81365758 ATCTTGGTG-ATTTTG
1 ATCTTGGTGAATTTTG
81365773 TGAAAAATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.16, C:0.09, G:0.25, T:0.50
Consensus pattern (17 bp):
ATCTTGGTGAATTTTGC
Found at i:81366223 original size:42 final size:44
Alignment explanation
Indices: 81366160--81366308 Score: 152
Period size: 42 Copynumber: 3.5 Consensus size: 44
81366150 TCTATGACAT
*
81366160 CGTGTAAGACCGTGTCTGGGACACAGGC-TCGAT-TGAGATTTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGATCTGAGATTTA
*
81366202 CGTATAAGACCATGTCTGGGACATCA-GCATCGTATCT--GATTT-
1 CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-ATCTGAGATTTA
* * *
81366244 TGTGTAAGACCCTGTCTGGGACAGAGGCATCGATACTGA-A-TTA
1 CGTGTAAGACCATGTCTGGGACACAGGCATCGAT-CTGAGATTTA
* *
81366287 CATGTAAGACCACGTCTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
81366309 GTCGGCATTG
Statistics
Matches: 88, Mismatches: 10, Indels: 17
0.77 0.09 0.15
Matches are distributed among these distances:
41 3 0.03
42 53 0.60
43 29 0.33
44 2 0.02
45 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACACAGGCATCGATCTGAGATTTA
Found at i:81367802 original size:6 final size:6
Alignment explanation
Indices: 81367791--81367821 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
81367781 ATAATTGGTT
81367791 AATAAA AATAAA AATAAA AATAAA AATAAA A
1 AATAAA AATAAA AATAAA AATAAA AATAAA A
81367822 TTTAAATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:81369270 original size:34 final size:34
Alignment explanation
Indices: 81369201--81369277 Score: 84
Period size: 34 Copynumber: 2.2 Consensus size: 34
81369191 GTGGTGTTGT
* *
81369201 TATATATAATATATATGCCTCTATGGTTCTGTTA
1 TATATATAATATATATGCCTCTAGGGTTCTATTA
* **
81369235 TATATATACTATATATGTGTCTAGGGATT-TATTA
1 TATATATAATATATATGCCTCTAGGG-TTCTATTA
81369269 TAATATATA
1 T-ATATATA
81369278 TGCGTTTATA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 27 0.75
35 9 0.25
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.47
Consensus pattern (34 bp):
TATATATAATATATATGCCTCTAGGGTTCTATTA
Found at i:81372609 original size:20 final size:21
Alignment explanation
Indices: 81372575--81372628 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
81372565 TGATAATATT
*
81372575 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
81372596 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
81372616 TTTTATTATTTTA
1 TTATATTATTTTA
81372629 TTATTATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:81372627 original size:8 final size:8
Alignment explanation
Indices: 81372614--81372655 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
81372604 TTTAATGAGA
81372614 TATTTTAT
1 TATTTTAT
81372622 TATTTTAT
1 TATTTTAT
81372630 TA--TTAT
1 TATTTTAT
81372636 T-TTATTAT
1 TATT-TTAT
81372644 TATTTTAT
1 TATTTTAT
81372652 TATT
1 TATT
81372656 AATTATTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
6 5 0.17
8 23 0.77
9 2 0.07
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TATTTTAT
Found at i:81372632 original size:3 final size:3
Alignment explanation
Indices: 81372614--81372662 Score: 61
Period size: 3 Copynumber: 17.3 Consensus size: 3
81372604 TTTAATGAGA
81372614 TAT T-T TAT TAT T-T TAT TAT TAT T-T TAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
81372659 TAT T
1 TAT T
81372663 TAGTATAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 8 0.20
3 30 0.73
4 3 0.07
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TAT
Found at i:81372634 original size:11 final size:11
Alignment explanation
Indices: 81372618--81372656 Score: 78
Period size: 11 Copynumber: 3.5 Consensus size: 11
81372608 ATGAGATATT
81372618 TTATTATTTTA
1 TTATTATTTTA
81372629 TTATTATTTTA
1 TTATTATTTTA
81372640 TTATTATTTTA
1 TTATTATTTTA
81372651 TTATTA
1 TTATTA
81372657 ATTATTTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:81372638 original size:19 final size:19
Alignment explanation
Indices: 81372614--81372655 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
81372604 TTTAATGAGA
81372614 TATTTTATTATTTTATTAT
1 TATTTTATTATTTTATTAT
81372633 TATTTTATTATTATT-TTAT
1 TATTTTATTATT-TTATTAT
81372652 TATT
1 TATT
81372656 AATTATTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (19 bp):
TATTTTATTATTTTATTAT
Found at i:81374705 original size:46 final size:46
Alignment explanation
Indices: 81374609--81374789 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
81374599 AGTGTGCTCT
* *
81374609 CTGATATGAAATGTGTAGGACCAT-GTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
81374654 CTGATATGAAATGTGTAAGACCATGGTTGGAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
**
81374700 CTGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
81374746 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
81374790 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 13, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
45 24 0.20
46 97 0.80
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:81382260 original size:22 final size:22
Alignment explanation
Indices: 81382229--81382270 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
81382219 TTTAACTTAA
*
81382229 TATTTTTTCTT-TTTCTTTTTT
1 TATTTTTTCTTCCTTCTTTTTT
81382250 TATTTTGTTCTTCCTTCTTTT
1 TATTTT-TTCTTCCTTCTTTT
81382271 CTCGTTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 5 0.28
23 7 0.39
ACGTcount: A:0.05, C:0.14, G:0.02, T:0.79
Consensus pattern (22 bp):
TATTTTTTCTTCCTTCTTTTTT
Found at i:81384277 original size:22 final size:22
Alignment explanation
Indices: 81384246--81384287 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
81384236 GAATGACTCG
81384246 CCCTTGTATTTATACTAGGGCA
1 CCCTTGTATTTATACTAGGGCA
*
81384268 CCCTTTTATTTATACTAGGG
1 CCCTTGTATTTATACTAGGG
81384288 TTGCCACCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (22 bp):
CCCTTGTATTTATACTAGGGCA
Found at i:81384541 original size:26 final size:27
Alignment explanation
Indices: 81384476--81384542 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
81384466 TTTACTTTAG
*
81384476 TAAAATTTTGACGATTTTACCCTTCGA
1 TAAAATTTTGACAATTTTACCCTTCGA
*
81384503 TAAAATTTTGACAATTTTACCC-TCTA
1 TAAAATTTTGACAATTTTACCCTTCGA
*
81384529 TAAAATTTCGACAA
1 TAAAATTTTGACAA
81384543 AATTCGTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 16 0.43
27 21 0.57
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (27 bp):
TAAAATTTTGACAATTTTACCCTTCGA
Found at i:81388607 original size:30 final size:29
Alignment explanation
Indices: 81388564--81388624 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
81388554 CAAGTAACTG
81388564 AAGCTAGTTAAATCACACACTTAGTGCCA
1 AAGCTAGTTAAATCACACACTTAGTGCCA
*
81388593 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCACACACTTAGTGCCA
81388623 AA
1 AA
81388625 ACTTCCGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCACACACTTAGTGCCA
Found at i:81395073 original size:21 final size:20
Alignment explanation
Indices: 81395035--81395083 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
81395025 ATATTAGTTT
*
81395035 ATAATTAATAATAATTAACC
1 ATAATTAATAATAATTAAAC
*
81395055 ATTAATTAATTAAT-CTTAAAC
1 A-TAATTAA-TAATAATTAAAC
81395076 ATAATTAA
1 ATAATTAA
81395084 CAAGTTTAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 8 0.32
21 13 0.52
22 4 0.16
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (20 bp):
ATAATTAATAATAATTAAAC
Found at i:81396763 original size:40 final size:40
Alignment explanation
Indices: 81396704--81397036 Score: 442
Period size: 40 Copynumber: 8.2 Consensus size: 40
81396694 GGGATTTAGT
* * *
81396704 CGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCC
1 CGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
81396744 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCC
* *
81396784 CGGGTATAGCAACTACTTGCACAAATGCCTTCGGGACTTCGCC
1 CGGATATAGCAACTA---GCACAAATGCCTTCGGGACTTAGCC
81396827 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCC
* *
81396867 CGGATATAGCAACTCA-CACACATGCCTTCGGGTCTTAGCC
1 CGGATATAGCAACT-AGCACAAATGCCTTCGGGACTTAGCC
*
81396907 CGGATATAGTC-ACTAGCACAGATGCCTTCGGGACTTAGCC
1 CGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCC
* *
81396947 CGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCC
1 CGGATATAGCAACTA---GCACAAATGCCTTCGGGACTTAGCC
81396990 CGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCC
81397030 CGGATAT
1 CGGATAT
81397037 CATCCGAATA
Statistics
Matches: 262, Mismatches: 16, Indels: 30
0.85 0.05 0.10
Matches are distributed among these distances:
39 4 0.02
40 182 0.69
41 3 0.01
43 71 0.27
44 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:81396817 original size:83 final size:80
Alignment explanation
Indices: 81396708--81397032 Score: 515
Period size: 83 Copynumber: 4.0 Consensus size: 80
81396698 TTTAGTCGGA
* *
81396708 TATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
1 TATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
81396773 GGGACTTAGCCCGGG
66 GGGACTTAGCCCGGG
*
81396788 TATAGCAACTACTTGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCC
1 TATAGCAACT-C--GCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
*
81396853 TTCGGGACTTAGCCCGGA
63 TTCGGGACTTAGCCCGGG
* * * *
81396871 TATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAGATGCCTTC
1 TATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
81396936 GGGACTTAGCCCGGG
66 GGGACTTAGCCCGGG
*
81396951 TATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCC
1 TATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCC
81397016 TTCGGGACTTAGCCCGG
63 TTCGGGACTTAGCCCGG
81397033 ATATCATCCG
Statistics
Matches: 224, Mismatches: 15, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
80 79 0.35
81 2 0.01
82 1 0.00
83 142 0.63
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (80 bp):
TATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTC
GGGACTTAGCCCGGG
Found at i:81396974 original size:163 final size:163
Alignment explanation
Indices: 81396704--81397036 Score: 639
Period size: 163 Copynumber: 2.0 Consensus size: 163
81396694 GGGATTTAGT
*
81396704 CGGATATAGCAACTCGCACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CGGATATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
81396769 CTTCGGGACTTAGCCCGGGTATAGCAACTACTTGCACAAATGCCTTCGGGACTTCGCCCGGATAT
66 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATAT
81396834 AGTCACTAGCACAAATGCCTTCGGGACTTAGCC
131 AGTCACTAGCACAAATGCCTTCGGGACTTAGCC
*
81396867 CGGATATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAGATGC
1 CGGATATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
81396932 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATAT
66 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATAT
81396997 AGTCACTAGCACAAATGCCTTCGGGACTTAGCC
131 AGTCACTAGCACAAATGCCTTCGGGACTTAGCC
81397030 CGGATAT
1 CGGATAT
81397037 CATCCGAATA
Statistics
Matches: 167, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
163 167 1.00
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (163 bp):
CGGATATAGCAACTCACACACATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATAT
AGTCACTAGCACAAATGCCTTCGGGACTTAGCC
Found at i:81401660 original size:40 final size:40
Alignment explanation
Indices: 81401601--81401792 Score: 289
Period size: 40 Copynumber: 4.8 Consensus size: 40
81401591 CATTTGAATG
* * *
81401601 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
81401641 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
81401681 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
81401721 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* *
81401761 ATA-CCTGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGC
81401793 TTGTGGTTAT
Statistics
Matches: 142, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 137 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:81409579 original size:56 final size:56
Alignment explanation
Indices: 81409494--81409612 Score: 204
Period size: 56 Copynumber: 2.1 Consensus size: 56
81409484 ACAAGGGATG
*
81409494 ATGGGC-AAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
* *
81409549 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAAAAGT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
81409605 ATGGGCAA
1 ATGGGCAA
81409613 TAAACTAATA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
55 6 0.10
56 54 0.90
ACGTcount: A:0.45, C:0.08, G:0.23, T:0.24
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
Found at i:81410899 original size:47 final size:47
Alignment explanation
Indices: 81410839--81411184 Score: 491
Period size: 47 Copynumber: 7.3 Consensus size: 47
81410829 TGAAAGTGTA
81410839 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
81410886 TGTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
81410933 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
81410980 CATATATGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
81411027 TATATATATGTGATAAGGTCGAATGACCAATGTGATGAATGTGAACATG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
81411076 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* *
81411123 TATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
81411170 TATAAATGTGATAAG
1 TATATATGTGATAAG
81411185 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 23, Indels: 12
0.89 0.08 0.04
Matches are distributed among these distances:
46 2 0.01
47 224 0.83
48 3 0.01
49 40 0.15
50 1 0.00
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:81410966 original size:22 final size:22
Alignment explanation
Indices: 81410939--81411015 Score: 59
Period size: 22 Copynumber: 3.4 Consensus size: 22
81410929 CATGTGTATG
81410939 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
81410961 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
81410986 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
81411008 TGTGATAA
1 TGTGATAA
81411016 ATGTGAAAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
22 15 0.38
23 9 0.22
24 9 0.22
25 7 0.17
ACGTcount: A:0.35, C:0.13, G:0.29, T:0.23
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:81411139 original size:190 final size:190
Alignment explanation
Indices: 81410822--81411163 Score: 578
Period size: 190 Copynumber: 1.8 Consensus size: 190
81410812 GTATATTTGA
* *
81410822 ATAAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGT
1 ATAAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGC
* * * * *
81410887 GTATGTGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCG
66 ATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCG
81410952 AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
131 AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
*
81411012 ATAAATGTGAAAGTGTATATATATGTGATAAGGTCGAATGACCAATGTGATGAATGTGAACATGC
1 ATAAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGC
*
81411077 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCC
66 ATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCC
*
81411141 GAATGGCCAATGTGATGGATGTG
130 GAATGGCCAATGTGATGAATGTG
81411164 GAAGTGTATA
Statistics
Matches: 141, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
189 1 0.01
190 140 0.99
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.27
Consensus pattern (190 bp):
ATAAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGC
ATATATGAGATAAGGCCAAATGGCCAATGTGATGAATGTGAACATGTATATATGTGATAAGGCCG
AATGGCCAATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTG
Found at i:81413678 original size:38 final size:38
Alignment explanation
Indices: 81413614--81413686 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
81413604 AATCCAACTT
*
81413614 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCAGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCAGG
* *
81413652 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCC
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCC
81413687 GGATTAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.03
38 30 0.97
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCAGG
Found at i:81413806 original size:40 final size:40
Alignment explanation
Indices: 81413742--81414140 Score: 597
Period size: 40 Copynumber: 10.1 Consensus size: 40
81413732 AGGTCTCAAC
81413742 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
81413781 TATGTATCCAGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
81413821 GATGTATACGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
81413861 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
81413901 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
81413941 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
*
81413981 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCCTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * *
81414021 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGTTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * * *
81414061 GATATATCTGTGCTAA-CCCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
* * * * *
81414100 GTTATATCCGGGCTAGGT-CCGAAGAGCAATCATGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
81414139 GA
1 GA
81414141 CGTGTATTCG
Statistics
Matches: 329, Mismatches: 29, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
39 54 0.16
40 275 0.84
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
Found at i:81415497 original size:56 final size:56
Alignment explanation
Indices: 81415411--81415530 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
81415401 ACAATGGATG
*
81415411 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
*
81415467 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAAAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
81415523 ATGGGCAA
1 ATGGGCAA
81415531 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
Found at i:81416785 original size:22 final size:22
Alignment explanation
Indices: 81416757--81416881 Score: 60
Period size: 22 Copynumber: 5.4 Consensus size: 22
81416747 GTGTATATAT
81416757 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
* * *
81416779 ATGTGATGAATG-TGAACATGTG-TA
1 ATGTGAT-AAGGCCG-A-ATG-GCCA
*
81416803 TGTGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
* * *
81416826 ATGTGATGAATG-TGAACAT-GCATA
1 ATGTGAT-AAGGCCG-A-ATGGC-CA
*
81416850 TATGAGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
81416873 ATGTGATAA
1 ATGTGATAA
81416882 ATGTGAAAGT
Statistics
Matches: 73, Mismatches: 16, Indels: 28
0.62 0.14 0.24
Matches are distributed among these distances:
22 24 0.33
23 17 0.23
24 17 0.23
25 15 0.21
ACGTcount: A:0.34, C:0.12, G:0.30, T:0.25
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:81416812 original size:47 final size:47
Alignment explanation
Indices: 81416752--81417050 Score: 424
Period size: 47 Copynumber: 6.3 Consensus size: 47
81416742 TGAAAGTGTA
81416752 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
81416799 TGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* * *
81416846 CATATATGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
*
81416893 TATATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATG
1 --TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
* *
81416942 CATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TG
* * *
81416989 TATATATGTGATAAGACCGAATGGCCAATGTGATGGATGTGGAA-GTG
1 TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGT-GAACATG
*
81417036 TATAAATGTGATAAG
1 TATATATGTGATAAG
81417051 TCCCGAAGGG
Statistics
Matches: 226, Mismatches: 20, Indels: 12
0.88 0.08 0.05
Matches are distributed among these distances:
46 2 0.01
47 179 0.79
48 3 0.01
49 41 0.18
50 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.28, T:0.27
Consensus pattern (47 bp):
TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG
Found at i:81416851 original size:96 final size:94
Alignment explanation
Indices: 81416753--81417029 Score: 466
Period size: 96 Copynumber: 2.9 Consensus size: 94
81416743 GAAAGTGTAT
* * * *
81416753 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATATATGTGATAAGACC
81416817 GAATGGCCAATGTGATGAATGTGAACATGC
65 GAATGGCCAATGTGATGAATGTGAACATGC
*
81416847 ATATATGAGATAAGGCCGAATGGCCAATGTGATAAATGTGAAAGTGTATATATATGTGATAAGAC
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGAC
81416912 CGAATGGCCAATGTGATGAATGTGAACATGC
64 CGAATGGCCAATGTGATGAATGTGAACATGC
81416943 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCG
1 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCG
*
81417008 AATGGCCAATGTGATGGATGTG
66 AATGGCCAATGTGATGAATGTG
81417030 GAAGTGTATA
Statistics
Matches: 173, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
93 1 0.01
94 82 0.47
96 90 0.52
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (94 bp):
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCG
AATGGCCAATGTGATGAATGTGAACATGC
Found at i:81416900 original size:143 final size:143
Alignment explanation
Indices: 81416735--81417050 Score: 503
Period size: 143 Copynumber: 2.2 Consensus size: 143
81416725 GTATATTTGA
* *
81416735 ATAAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGT
1 ATAAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGC
* * * *
81416800 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGCATATATGAGATAAGGCC
66 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGCATATATGAGATAAGACC
81416864 GAATGGCCAATGTG
130 GAATGGCCAATGTG
81416878 ATAAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGC
1 ATAAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGC
* *
81416943 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGACCG
66 ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGACCG
81417008 AATGGCCAATGTG
131 AATGGCCAATGTG
** *
81417021 ATGGATGTGGAAGTGTATA-A-ATGTGATAAG
1 ATAAATGTGAAAGTGTATATATATGTGATAAG
81417051 TCCCGAAGGG
Statistics
Matches: 161, Mismatches: 11, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
141 10 0.06
142 2 0.01
143 149 0.93
ACGTcount: A:0.36, C:0.09, G:0.28, T:0.27
Consensus pattern (143 bp):
ATAAATGTGAAAGTGTATATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAACATGC
ATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGCATATATGAGATAAGACCG
AATGGCCAATGTG
Found at i:81420556 original size:28 final size:28
Alignment explanation
Indices: 81420495--81420698 Score: 295
Period size: 28 Copynumber: 7.3 Consensus size: 28
81420485 TTAAGTCCGT
* *
81420495 ACACTCAGTGCTATATAATC-AACTCGC
1 ACACTTAGTGCTACATAATCAAACTCGC
*
81420522 ACACTTAGTGCTATATAATCAAACTCGC
1 ACACTTAGTGCTACATAATCAAACTCGC
*
81420550 ACGCTTAGTGCTACATAATCAAACTCGC
1 ACACTTAGTGCTACATAATCAAACTCGC
81420578 ACACTTAGTGCTACATAATCAAACTCGC
1 ACACTTAGTGCTACATAATCAAACTCGC
*
81420606 ACACTTAGTGCTACATAATCAAGCTCGC
1 ACACTTAGTGCTACATAATCAAACTCGC
*
81420634 ACACTTAGTGCTACATAATCAAGCTCGC
1 ACACTTAGTGCTACATAATCAAACTCGC
* * *
81420662 ACACTTAGTGTTGTACA-ATTTAAACTCGC
1 ACACTTAGTG--CTACATAATCAAACTCGC
81420691 ACACTTAG
1 ACACTTAG
81420699 CGCCAATCTC
Statistics
Matches: 165, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
27 19 0.12
28 125 0.76
29 17 0.10
30 4 0.02
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
ACACTTAGTGCTACATAATCAAACTCGC
Found at i:81423247 original size:40 final size:40
Alignment explanation
Indices: 81423017--81423248 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
81423007 CATTTGAATG
* * *
81423017 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
* * * * *
81423057 TTATCCGGGCTAAGTCCCTAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
*
81423097 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
81423137 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
81423177 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
* * *
81423217 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
81423249 TTGTGGTTAT
Statistics
Matches: 180, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 177 0.98
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:81429592 original size:40 final size:40
Alignment explanation
Indices: 81429512--81429776 Score: 313
Period size: 40 Copynumber: 6.6 Consensus size: 40
81429502 AACCCAAGTA
* * * *
81429512 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCGCACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
81429551 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
* * *
81429591 CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACACATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
* *
81429631 CCTTTGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
** *
81429671 CCTTCTCGACTTAGCCCGGGTATAGCAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATG
* *
81429714 CCTTCGGGACTTCGCCCGGATATAGTC-ACTAGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
81429754 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
81429777 CATCCGAATA
Statistics
Matches: 192, Mismatches: 25, Indels: 17
0.82 0.11 0.07
Matches are distributed among these distances:
39 14 0.07
40 141 0.73
41 2 0.01
43 34 0.18
44 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:81429644 original size:80 final size:80
Alignment explanation
Indices: 81429512--81429776 Score: 397
Period size: 80 Copynumber: 3.3 Consensus size: 80
81429502 AACCCAAGTA
* * *
81429512 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCGCACATGCCTTCGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
81429576 TCACTAGCACAAATG
66 TCACTAGCACAAATG
*
81429591 CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACACATGCCTTTGGGTCTTAGCCCGGATATAG
1 CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
81429656 TCACTAGCACAAATG
66 TCACTAGCACAAATG
** * * * *
81429671 CCTTCTCGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGCCTTCGGGACTTCGCCCGGATA
1 CCTTCGGGACTTAGCCCGGATATAGCAA--A-TCGCACACATGCCTTCGGGTCTTAGCCCGGATA
*
81429736 TAGTCACTAGCACAAATA
63 TAGTCACTAGCACAAATG
81429754 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
81429777 CATCCGAATA
Statistics
Matches: 167, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
79 13 0.08
80 87 0.52
82 1 0.01
83 66 0.40
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACACATGCCTTCGGGTCTTAGCCCGGATATAG
TCACTAGCACAAATG
Found at i:81433067 original size:17 final size:17
Alignment explanation
Indices: 81433045--81433081 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
81433035 AGAAACATAG
81433045 ATGTAATCATTGGAATA
1 ATGTAATCATTGGAATA
81433062 ATGTAATCATTGGAATA
1 ATGTAATCATTGGAATA
81433079 ATG
1 ATG
81433082 ATACATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.19, T:0.35
Consensus pattern (17 bp):
ATGTAATCATTGGAATA
Found at i:81434543 original size:31 final size:31
Alignment explanation
Indices: 81434446--81434549 Score: 95
Period size: 31 Copynumber: 3.4 Consensus size: 31
81434436 TATTAAATTA
* * *
81434446 AATTTAATATTTATCTATATAGTAATTTATT
1 AATTTAATATTTATCTAGATAATATTTTATT
* * * **
81434477 AATTCAATATTTATAT-GA-GATATTAAACTT
1 AATTTAATATTTATCTAGATAATATTTTA-TT
*
81434507 AAATTTAATAATTATCTAGATAATATTTTATT
1 -AATTTAATATTTATCTAGATAATATTTTATT
81434539 AATTTAATATT
1 AATTTAATATT
81434550 AATGTGATTA
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
29 4 0.07
30 3 0.06
31 37 0.69
32 4 0.07
33 6 0.11
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (31 bp):
AATTTAATATTTATCTAGATAATATTTTATT
Found at i:81435255 original size:8 final size:8
Alignment explanation
Indices: 81435242--81435289 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
81435232 TTATTTTAGA
81435242 AAAATTTT
1 AAAATTTT
81435250 AAAATTTT
1 AAAATTTT
81435258 AAAATTTT
1 AAAATTTT
81435266 ATATATATTTTT
1 A-A-A-A-TTTT
*
81435278 AGAATTTT
1 AAAATTTT
81435286 AAAA
1 AAAA
81435290 AAAAATGAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 24 0.71
9 2 0.06
10 2 0.06
11 1 0.03
12 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (8 bp):
AAAATTTT
Found at i:81442718 original size:39 final size:39
Alignment explanation
Indices: 81442674--81442846 Score: 233
Period size: 39 Copynumber: 4.4 Consensus size: 39
81442664 ATTATATTAT
*
81442674 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
**
81442713 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
*
81442752 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
** * * *
81442791 CAGCACGAAGCCTGC-GGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
81442830 CAGCAC-ATAGCCTGCGG
1 CAGCACGA-AGCCTGCGG
81442847 ACCCTAAGTC
Statistics
Matches: 121, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 7 0.06
39 113 0.93
40 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:81449119 original size:39 final size:39
Alignment explanation
Indices: 81449075--81449205 Score: 226
Period size: 39 Copynumber: 3.4 Consensus size: 39
81449065 ATTATATTAT
*
81449075 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
**
81449114 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
*
81449153 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
81449192 CAGCACGAAGCCTG
1 CAGCACGAAGCCTG
81449206 TGGACCCTAA
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.24, C:0.31, G:0.25, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:81449222 original size:39 final size:39
Alignment explanation
Indices: 81449075--81449265 Score: 210
Period size: 39 Copynumber: 4.9 Consensus size: 39
81449065 ATTATATTAT
* *
81449075 CAGCACAAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGAC-CTAAGCCCGGATACATTTC
* **
81449114 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* *
81449153 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
* * * *
81449192 CAGCACGAAGCCTG-TGGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGGA-CCTAAGCCCGGATACATTTC
*
81449231 CAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATACA
1 CAGCACGA-AGCCTGCGGGA-CCTAAGCCCGGATACA
81449266 CATCAAATAT
Statistics
Matches: 137, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
38 6 0.04
39 131 0.96
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACCTAAGCCCGGATACATTTC
Found at i:81451680 original size:23 final size:22
Alignment explanation
Indices: 81451654--81451697 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
81451644 ATGGTTTTAA
*
81451654 ATTTTTAAAAAATATAAAATAAT
1 ATTTTCAAAAAATA-AAAATAAT
*
81451677 ATTTTCCAAAAATAAAAATAA
1 ATTTTCAAAAAATAAAAATAA
81451698 AAATTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTTTCAAAAAATAAAAATAAT
Found at i:81453710 original size:19 final size:19
Alignment explanation
Indices: 81453682--81453767 Score: 68
Period size: 19 Copynumber: 4.5 Consensus size: 19
81453672 AAAAGCTATA
*
81453682 TGTTACATGGATGAATTAC
1 TGTTATATGGATGAATTAC
*
81453701 TGTTATATGGATGAAGTAC
1 TGTTATATGGATGAATTAC
* ** *
81453720 TGTTTAAACAGATGAGTTAC
1 TG-TTATATGGATGAATTAC
*
81453740 TGTTATCA--AATGAATTAC
1 TGTTAT-ATGGATGAATTAC
81453758 TGTTTATATG
1 TG-TTATATG
81453768 ATTGAGAGTA
Statistics
Matches: 52, Mismatches: 10, Indels: 9
0.73 0.14 0.13
Matches are distributed among these distances:
18 11 0.21
19 26 0.50
20 15 0.29
ACGTcount: A:0.33, C:0.08, G:0.20, T:0.40
Consensus pattern (19 bp):
TGTTATATGGATGAATTAC
Found at i:81455473 original size:32 final size:32
Alignment explanation
Indices: 81455432--81455494 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
81455422 TTTTTAGTTT
81455432 TTATTATTAATAATTACTTTTTCAGAGTTTTG
1 TTATTATTAATAATTACTTTTTCAGAGTTTTG
* *
81455464 TTATTATTAATAATTTCTTTTTCATAGTTTT
1 TTATTATTAATAATTACTTTTTCAGAGTTTT
81455495 ACTCCTTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.06, G:0.06, T:0.60
Consensus pattern (32 bp):
TTATTATTAATAATTACTTTTTCAGAGTTTTG
Found at i:81459500 original size:50 final size:50
Alignment explanation
Indices: 81459425--81459570 Score: 274
Period size: 50 Copynumber: 2.9 Consensus size: 50
81459415 TAGATCATTG
* *
81459425 CGTCACAAACCAAAAGGTCGACCCACATTAACTCAGATATGTGACATTTA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
81459475 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
81459525 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACA
1 CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACA
81459571 ACATGGATAT
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 94 1.00
ACGTcount: A:0.38, C:0.29, G:0.14, T:0.18
Consensus pattern (50 bp):
CGTCACAAACCAAAAGGTCGACCCACATCAACTCAGATACGTGACATTTA
Found at i:81459715 original size:20 final size:20
Alignment explanation
Indices: 81459692--81459732 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
81459682 CTCATTAACA
81459692 GATTTATTAATATTTTAATC
1 GATTTATTAATATTTTAATC
* *
81459712 GATTTATTTATTTTTTAATC
1 GATTTATTAATATTTTAATC
81459732 G
1 G
81459733 CAATTCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.05, G:0.07, T:0.59
Consensus pattern (20 bp):
GATTTATTAATATTTTAATC
Found at i:81464231 original size:6 final size:6
Alignment explanation
Indices: 81464217--81464253 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
81464207 CATATCTGCT
*
81464217 TCTGTAA TCTGAA TCTGAA TCTGAA TATGAA TCTGAA
1 TCTG-AA TCTGAA TCTGAA TCTGAA TCTGAA TCTGAA
81464254 ATTGTATCTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
6 24 0.86
7 4 0.14
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (6 bp):
TCTGAA
Found at i:81464862 original size:19 final size:20
Alignment explanation
Indices: 81464838--81464879 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
81464828 TATATTTTTA
*
81464838 TTTTATGT-ATTTTTCTAAT
1 TTTTATGTAATATTTCTAAT
*
81464857 TTTTATTTAATATTTCTAAT
1 TTTTATGTAATATTTCTAAT
81464877 TTT
1 TTT
81464880 ATTTTTTGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTTATGTAATATTTCTAAT
Found at i:81466303 original size:3 final size:3
Alignment explanation
Indices: 81466290--81466359 Score: 58
Period size: 3 Copynumber: 24.7 Consensus size: 3
81466280 AGAGTCCTAG
* * * * * *
81466290 GAA GTA GAA GAA G-A GAA AAA GAA GAA TAA G-A TAA GAA -AT GGA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
81466335 GAA GAA GAA GAA -AA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
81466360 GAAAATTGAA
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
2 6 0.12
3 45 0.88
ACGTcount: A:0.64, C:0.00, G:0.30, T:0.06
Consensus pattern (3 bp):
GAA
Found at i:81466314 original size:14 final size:14
Alignment explanation
Indices: 81466295--81466364 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
81466285 CCTAGGAAGT
81466295 AGAAGAAGAGAAAA
1 AGAAGAAGAGAAAA
* *
81466309 AGAAGAATA-AGATA
1 AGAAGAAGAGA-AAA
* *
81466323 AGAA-ATGGAGAAGA
1 AGAAGA-AGAGAAAA
81466337 AGAAGAAGA-AAAGA
1 AGAAGAAGAGAAA-A
81466351 AGAAGAAGAGAAAA
1 AGAAGAAGAGAAAA
81466365 TTGAAGGAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 12
0.69 0.11 0.19
Matches are distributed among these distances:
13 4 0.09
14 34 0.79
15 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (14 bp):
AGAAGAAGAGAAAA
Found at i:81466350 original size:11 final size:11
Alignment explanation
Indices: 81466295--81466362 Score: 54
Period size: 11 Copynumber: 6.4 Consensus size: 11
81466285 CCTAGGAAGT
81466295 AGAAGAAGAGAA
1 AGAAGAAGA-AA
81466307 A-AAGAAGAATA
1 AGAAGAAGAA-A
*
81466318 AG-ATAAGAAA
1 AGAAGAAGAAA
* *
81466328 TGGAGAAG--A
1 AGAAGAAGAAA
81466337 AGAAGAAGAAA
1 AGAAGAAGAAA
*
81466348 AGAAGAAGAAG
1 AGAAGAAGAAA
81466359 AGAA
1 AGAA
81466363 AATTGAAGGA
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
9 7 0.16
10 3 0.07
11 34 0.76
12 1 0.02
ACGTcount: A:0.66, C:0.00, G:0.29, T:0.04
Consensus pattern (11 bp):
AGAAGAAGAAA
Found at i:81467479 original size:21 final size:21
Alignment explanation
Indices: 81467453--81467495 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
81467443 CAATGTGGCA
* *
81467453 AGTTAATTGGCCACATCAGCT
1 AGTTAACTGCCCACATCAGCT
*
81467474 AGTTAACTGCCCACGTCAGCT
1 AGTTAACTGCCCACATCAGCT
81467495 A
1 A
81467496 TCCCATTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (21 bp):
AGTTAACTGCCCACATCAGCT
Found at i:81470708 original size:27 final size:27
Alignment explanation
Indices: 81470677--81470854 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81470667 TAAATTGTAC
81470677 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81470704 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81470730 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81470758 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81470786 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81470813 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81470840 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81470855 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81470791 original size:82 final size:81
Alignment explanation
Indices: 81470678--81470833 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81470668 AAATTGTACA
* *
81470678 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81470742 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81470759 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81470824 TGCGAGTTGA
65 TGCGAATTGA
81470834 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81470845 original size:82 final size:81
Alignment explanation
Indices: 81470674--81470854 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81470664 GATTAAATTG
* *
81470674 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81470739 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81470755 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81470819 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81470837 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81470855 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81478770 original size:27 final size:27
Alignment explanation
Indices: 81478739--81478916 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
81478729 TAAATTGTAC
81478739 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
81478766 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81478792 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
81478820 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
81478848 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
81478875 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
81478902 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81478917 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:81478853 original size:82 final size:81
Alignment explanation
Indices: 81478740--81478895 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
81478730 AAATTGTACA
* *
81478740 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
81478804 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
81478821 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
81478886 TGCGAGTTGA
65 TGCGAATTGA
81478896 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:81478907 original size:82 final size:81
Alignment explanation
Indices: 81478736--81478916 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
81478726 GATTAAATTG
* *
81478736 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
81478801 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
81478817 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
81478881 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
81478899 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
81478917 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:81485231 original size:31 final size:30
Alignment explanation
Indices: 81485174--81485231 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
81485164 TTTTCGAGCC
* *
81485174 TAGGGGCAAATTTGTAATTTTGCAAAGGTT
1 TAGGGGCAAAATTGTAATTTTCCAAAGGTT
81485204 TAGGGGCAAAATTGTAATTTTTCCAAAG
1 TAGGGGCAAAATTGTAA-TTTTCCAAAG
81485232 TTTGAGTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 16 0.64
31 9 0.36
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.34
Consensus pattern (30 bp):
TAGGGGCAAAATTGTAATTTTCCAAAGGTT
Found at i:81486053 original size:47 final size:46
Alignment explanation
Indices: 81485995--81486454 Score: 243
Period size: 47 Copynumber: 9.5 Consensus size: 46
81485985 GAATTGGCAC
*
81485995 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGT
1 TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
81486042 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
* * * *** *
81486089 TAAGATAAAGATATCATGTAAGACCATGCCAAGG-CATGGCATTGATAAGTTC
1 TAAGACAAGGATACCATGTAAGACCATG-TTTGGACATGGCATT--T--G--G
* * * * * ***
81486141 TATAGGGCAAGGAAATCATGCAATACCATGTCAAGACATGGCATTGATGAG
1 TA-A-GACAAGGATACCATGTAAGACCATGTTTGGACATGGCATT--TG-G
* * ***
81486192 TTACTATAAGGCAAAGG-TCCCATGTAAGACCATGTCAAGACATGGCA-TTGG
1 ------TAAGAC-AAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG
* * * * *** *
81486243 AAAGGCAAGGATCCCGTGTAAGACCATGTCAAGACATGGCA-TCGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG
* * * *** * *
81486288 CATTGATTAAGGACT-CCATGTAAGACACA--TCAAGATATGGCA-CTGG
1 TA-AGA-CAAGGA-TACCATGTAAGAC-CATGTTTGGACATGGCATTTGG
81486334 CACTAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 ---TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
81486384 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGG-ACATGGCATTTGG
* *
81486431 TAAGATAAGGATATCATGTAAGAC
1 TAAGACAAGGATACCATGTAAGAC
81486455 ATGCCAAGGC
Statistics
Matches: 338, Mismatches: 45, Indels: 60
0.76 0.10 0.14
Matches are distributed among these distances:
44 4 0.01
45 38 0.11
46 27 0.08
47 171 0.51
48 10 0.03
49 8 0.02
50 4 0.01
51 1 0.00
52 5 0.01
53 3 0.01
54 32 0.09
55 28 0.08
56 5 0.01
57 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (46 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGACATGGCATTTGG
Found at i:81486224 original size:55 final size:54
Alignment explanation
Indices: 81486103--81486241 Score: 172
Period size: 55 Copynumber: 2.6 Consensus size: 54
81486093 ATAAAGATAT
* * * *
81486103 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAGGGCAAGGAAAT
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAAC
* * * **
81486157 CATGCAATACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGG-TCC
1 CATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-CTATAAGGC-AAGGAAAC
81486212 CATGTAAGACCATGTCAAGACATGGCATTG
1 CATGTAAGACCATGTCAAGACATGGCATTG
81486242 GAAAGGCAAG
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
54 32 0.44
55 36 0.50
56 4 0.06
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (54 bp):
CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCTATAAGGCAAGGAAAC
Found at i:81489807 original size:11 final size:11
Alignment explanation
Indices: 81489791--81489815 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
81489781 ATCTATGTTC
81489791 TTTATTTTATT
1 TTTATTTTATT
81489802 TTTATTTTATT
1 TTTATTTTATT
81489813 TTT
1 TTT
81489816 TTCACAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:81490418 original size:13 final size:13
Alignment explanation
Indices: 81490400--81490424 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81490390 ATTTTTTTAA
81490400 TTTTAATTAATAT
1 TTTTAATTAATAT
81490413 TTTTAATTAATA
1 TTTTAATTAATA
81490425 ACTCATATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTAATTAATAT
Found at i:81496250 original size:46 final size:46
Alignment explanation
Indices: 81496200--81496372 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
81496190 TGGTTGAGCA
*
81496200 TCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
81496246 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
81496291 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81496339 -CCTGAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
81496373 AGGGCGGTTA
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.53
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81496356 original size:93 final size:93
Alignment explanation
Indices: 81496197--81496367 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
81496187 GGATGGTTGA
* *
81496197 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
81496262 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
81496290 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCATTGAG
1 GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCATTGAG
81496354 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
81496368 ACTTAAGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACCCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:81513141 original size:46 final size:49
Alignment explanation
Indices: 81513035--81513150 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 49
81513025 AGTCTTCGAC
** * * *
81513035 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCA-ATATATATCTAAT
* *
81513085 ATGGGCTTACATGGCTCATTCCTGCCTCCAAAGCC-ATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCAATATATATCTAAT
81513131 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
81513151 TCTGTCCTAT
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
46 23 0.40
47 1 0.02
48 5 0.09
50 29 0.50
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGCCTCCAAAGCCAATATATATCTAAT
Found at i:81516879 original size:37 final size:37
Alignment explanation
Indices: 81516820--81516928 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
81516810 AGCTCAGATG
* *
81516820 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
81516857 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
81516894 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
81516929 ATATATTTCC
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:81517191 original size:98 final size:99
Alignment explanation
Indices: 81517075--81517336 Score: 386
Period size: 98 Copynumber: 2.6 Consensus size: 99
81517065 ACACATCGCC
*
81517075 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
* * * *
81517140 GACCATTCGGCTTTACCACATATGCATATCTC-A
66 AACCATTCAGCTTTACCAAATATACATATCTCAA
81517173 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
81517238 AACCATTCAGCTTTACCAAATATACATATCTCATATA
66 AACCATTCAGCTTTACCAAATATACATATCTC--A-A
* * * * *
81517275 TATATATTTCGCATTAGCCATTCGGATTTACCACATATACATATC-C-CATACATATTTCACAT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACAT
81517337 ATCTCATACA
Statistics
Matches: 150, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
98 92 0.61
100 14 0.09
101 1 0.01
102 43 0.29
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.37
Consensus pattern (99 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
AACCATTCAGCTTTACCAAATATACATATCTCAA
Found at i:81517199 original size:48 final size:49
Alignment explanation
Indices: 81517075--81517336 Score: 350
Period size: 50 Copynumber: 5.3 Consensus size: 49
81517065 ACACATCGCC
*
81517075 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* *
81517125 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTC-A
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCAA
81517173 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA-A
* * * *
81517223 TATATATTTCACATTAACCATTCAGCTTTACCAAATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A-A
* * * *
81517275 TATATATTTCGCATTAGCCATTCGGATTTACCACATATACATATC-CCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
81517323 TACATATTTCACAT
1 TACATATTTCACAT
81517337 ATCTCATACA
Statistics
Matches: 189, Mismatches: 17, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
48 57 0.30
49 2 0.01
50 86 0.46
51 1 0.01
52 43 0.23
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.37
Consensus pattern (49 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAA
Found at i:81517338 original size:20 final size:20
Alignment explanation
Indices: 81517313--81517356 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
81517303 TACCACATAT
81517313 ACATATCCCATACATATTTC
1 ACATATCCCATACATATTTC
*
81517333 ACATATCTCATACATATTTC
1 ACATATCCCATACATATTTC
81517353 ACAT
1 ACAT
81517357 TAGCCATTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.27, G:0.00, T:0.36
Consensus pattern (20 bp):
ACATATCCCATACATATTTC
Found at i:81517363 original size:68 final size:68
Alignment explanation
Indices: 81517278--81517404 Score: 227
Period size: 68 Copynumber: 1.9 Consensus size: 68
81517268 TCATATATAT
*
81517278 ATATTTCGCATTAGCCATTCGGATTTACCACATATACATATCCCATACATATTTCACATATCTCA
1 ATATTTCACATTAGCCATTCGGATTTACCACATATACATATCCCATACATATTTCACATATCTCA
81517343 TAC
66 TAC
* *
81517346 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 ATATTTCACATTAGCCATTCGGATTTACCACATATACATATCCCATACATATTTCACAT
81517405 TAGCCATTCG
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.36
Consensus pattern (68 bp):
ATATTTCACATTAGCCATTCGGATTTACCACATATACATATCCCATACATATTTCACATATCTCA
TAC
Found at i:81517386 original size:48 final size:48
Alignment explanation
Indices: 81517333--81517439 Score: 214
Period size: 48 Copynumber: 2.2 Consensus size: 48
81517323 TACATATTTC
81517333 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
81517381 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
1 ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
81517429 ACATATCTCAT
1 ACATATCTCAT
81517440 GCATCAATTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.36
Consensus pattern (48 bp):
ACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATAT
Found at i:81525297 original size:30 final size:30
Alignment explanation
Indices: 81525263--81525323 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81525253 TCCTTAACTC
81525263 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
81525293 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
81525323 A
1 A
81525324 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:81531606 original size:18 final size:18
Alignment explanation
Indices: 81531583--81531618 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81531573 AGTGATAATA
81531583 ATGATTATACTAAAAATT
1 ATGATTATACTAAAAATT
*
81531601 ATGATTATATTAAAAATT
1 ATGATTATACTAAAAATT
81531619 GATACAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.50, C:0.03, G:0.06, T:0.42
Consensus pattern (18 bp):
ATGATTATACTAAAAATT
Done.