Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 254 of 295
Found at i:81537871 original size:3 final size:3
Alignment explanation
Indices: 81537859--81537915 Score: 64
Period size: 3 Copynumber: 19.3 Consensus size: 3
81537849 GTTTGAAAAA
* *
81537859 AAG AAA AAG AAG AAG AAG AAG -AG AAG TAGG AAG -AG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG -AAG AAG AAG AAG AAG AAG
*
81537903 AAG AAG GAG AAG A
1 AAG AAG AAG AAG A
81537916 GGAAAAATGG
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (3 bp):
AAG
Found at i:81537899 original size:23 final size:23
Alignment explanation
Indices: 81537869--81537916 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
81537859 AAGAAAAAGA
*
81537869 AGAAGAAGAAG-AGAAGTAGGAAG
1 AGAAGAAGAAGAAGAAGGA-GAAG
81537892 AGAAGAAGAAGAAGAAGGAGAAG
1 AGAAGAAGAAGAAGAAGGAGAAG
81537915 AG
1 AG
81537917 GAAAAATGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.58, C:0.00, G:0.40, T:0.02
Consensus pattern (23 bp):
AGAAGAAGAAGAAGAAGGAGAAG
Found at i:81539053 original size:21 final size:21
Alignment explanation
Indices: 81539020--81539068 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
81539010 GTTAGGGCAC
* *
81539020 CTTGTTGAGTTGGGGTACCCT
1 CTTGCTGACTTGGGGTACCCT
*
81539041 CTTGCTGACTTGGGGTAGCCT
1 CTTGCTGACTTGGGGTACCCT
*
81539062 GTTGCTG
1 CTTGCTG
81539069 GGTTCGAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.08, C:0.20, G:0.35, T:0.37
Consensus pattern (21 bp):
CTTGCTGACTTGGGGTACCCT
Found at i:81539854 original size:42 final size:43
Alignment explanation
Indices: 81539736--81539911 Score: 209
Period size: 42 Copynumber: 4.2 Consensus size: 43
81539726 AAAAAAAAAC
* *
81539736 TCATTGCATGCATATTAAAAAATAGGCAAC-AC--ACCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
* *
81539776 TCATTGCATGCATATTAAAAAATAGTCAATAGCTTTCCAACAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
* *
81539819 TCATTGCATGCATATT-TAAAATAGTCAACAACTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
** * * *
81539861 TCATTGCATATATATTAAAAAA-AGTCAATAGCTTTCCAATAA
1 TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
*
81539903 TCACTGCAT
1 TCATTGCAT
81539912 ATGATCAGCA
Statistics
Matches: 118, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
40 28 0.24
41 1 0.01
42 62 0.53
43 27 0.23
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.30
Consensus pattern (43 bp):
TCATTGCATGCATATTAAAAAATAGTCAACAACTTTCCAACAA
Found at i:81539893 original size:84 final size:83
Alignment explanation
Indices: 81539736--81539911 Score: 239
Period size: 84 Copynumber: 2.1 Consensus size: 83
81539726 AAAAAAAAAC
*
81539736 TCATTGCATGCATATTAAAAAATAGGCAACACACCAACAATCATTGCATGCATATTAAAAAATAG
1 TCATTGCATGCATATTAAAAAATAGGCAACACACCAACAATCATTGCATACATATTAAAAAATAG
81539801 TCAATAGCTTTCCAACAA
66 TCAATAGCTTTCCAACAA
* * * * *
81539819 TCATTGCATGCATATT-TAAAATAGTCAACAACTTTCCAATAATCATTGCATATATATTAAAAAA
1 TCATTGCATGCATATTAAAAAATAGGCAAC-AC--ACCAACAATCATTGCATACATATTAAAAAA
*
81539883 -AGTCAATAGCTTTCCAATAA
63 TAGTCAATAGCTTTCCAACAA
*
81539903 TCACTGCAT
1 TCATTGCAT
81539912 ATGATCAGCA
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
82 11 0.13
83 18 0.22
84 27 0.33
85 26 0.32
ACGTcount: A:0.43, C:0.19, G:0.09, T:0.30
Consensus pattern (83 bp):
TCATTGCATGCATATTAAAAAATAGGCAACACACCAACAATCATTGCATACATATTAAAAAATAG
TCAATAGCTTTCCAACAA
Found at i:81541577 original size:15 final size:15
Alignment explanation
Indices: 81541556--81541600 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
81541546 ATACATCATT
*
81541556 ATCACTACCAGGCAC
1 ATCACTACCAGACAC
* *
81541571 TTCACTACTAGACAC
1 ATCACTACCAGACAC
*
81541586 ATCACTACCAAACAC
1 ATCACTACCAGACAC
81541601 GTTTTCTTCA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.38, G:0.07, T:0.18
Consensus pattern (15 bp):
ATCACTACCAGACAC
Found at i:81542096 original size:64 final size:63
Alignment explanation
Indices: 81541887--81542214 Score: 426
Period size: 64 Copynumber: 5.2 Consensus size: 63
81541877 TAGGAGCTTG
* * * * * * *
81541887 GATATAAACAATGACAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGTCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATATAATGGCA
* * * *
81541949 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTAATAATGTA-TAATTTAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATATAATGGCA
* * * *
81542011 GATACAAACAATGACAAATATACATAATAAACATCAATTTGATAATGACATTCATATAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATATAATGGCA
* * *
81542075 GATACAAACAATGGCAGATATACACAATAAACATCAATTTGATAATGAAATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATG-CATTCATATAATGGCA
* * *
81542139 GATACAAACAATGGCATATATACACAATAAAGATCAGTTTGATAATGGCATTCATACAATGGCA
1 GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAAT-GCATTCATATAATGGCA
81542203 GATACAAACAAT
1 GATACAAACAAT
81542215 AAACATCAAA
Statistics
Matches: 243, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
62 101 0.42
63 1 0.00
64 140 0.58
65 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.12, T:0.26
Consensus pattern (63 bp):
GATACAAACAATGGCAGATATACACAATAAACATCAGTTTGATAATGCATTCATATAATGGCA
Found at i:81542389 original size:30 final size:30
Alignment explanation
Indices: 81542353--81542433 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
81542343 TCGAAATAAC
*
81542353 CCTAAATCGAAATCAAAATCAAATTCTAAT
1 CCTAAATCGAAATCAAAATCAAATTCAAAT
* * * *
81542383 CCTAAATTGAGATCGAAATCAAAATTGAAAT
1 CCTAAATCGAAATCAAAATC-AAATTCAAAT
*
81542414 -CTAAATCTAAATCAAAATCA
1 CCTAAATCGAAATCAAAATCA
81542434 GTGAGTGTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
29 1 0.02
30 32 0.78
31 8 0.20
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (30 bp):
CCTAAATCGAAATCAAAATCAAATTCAAAT
Found at i:81542407 original size:18 final size:18
Alignment explanation
Indices: 81542356--81542425 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
81542346 AAATAACCCT
*
81542356 AAATCGAAATCAAAA-TC
1 AAATCGAAATCAAAATTG
* *
81542373 AAATTC-TAATCCTAAATTG
1 AAA-TCGAAAT-CAAAATTG
*
81542392 AGATCGAAATCAAAATTG
1 AAATCGAAATCAAAATTG
* *
81542410 AAATCTAAATCTAAAT
1 AAATCGAAATCAAAAT
81542426 CAAAATCAGT
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
17 6 0.15
18 28 0.70
19 6 0.15
ACGTcount: A:0.51, C:0.14, G:0.07, T:0.27
Consensus pattern (18 bp):
AAATCGAAATCAAAATTG
Found at i:81543035 original size:31 final size:29
Alignment explanation
Indices: 81542996--81543068 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 29
81542986 GGTAATTGTT
*
81542996 AGTTAGTGACTATTTTGTCACTTTTTTATA
1 AGTTAGTGACTATTTTGTCACTTTTTGA-A
** *
81543026 ACGTTAGTGACCGTTTTGTTACTTTTTGAA
1 A-GTTAGTGACTATTTTGTCACTTTTTGAA
81543056 AGTTAAGTGACTA
1 AGTT-AGTGACTA
81543069 AAATGAAACC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
29 3 0.09
30 9 0.26
31 23 0.66
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.47
Consensus pattern (29 bp):
AGTTAGTGACTATTTTGTCACTTTTTGAA
Found at i:81543661 original size:17 final size:17
Alignment explanation
Indices: 81543635--81543668 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81543625 AGGTTTATAT
*
81543635 ATATTATATTAATTTAA
1 ATATTATATTAACTTAA
*
81543652 ATATTCTATTAACTTAA
1 ATATTATATTAACTTAA
81543669 TTATCAGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTATATTAACTTAA
Found at i:81543923 original size:31 final size:31
Alignment explanation
Indices: 81543888--81543948 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
81543878 GTATACTTTA
*
81543888 ATTTAATTAATTATAGTATTT-GTACTTTTTG
1 ATTTAATCAATTATAGT-TTTCGTACTTTTTG
*
81543919 ATTTAATCAATTTTAGTTTTCGTACTTTTT
1 ATTTAATCAATTATAGTTTTCGTACTTTTT
81543949 AAAATGTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 3 0.11
31 24 0.89
ACGTcount: A:0.26, C:0.07, G:0.08, T:0.59
Consensus pattern (31 bp):
ATTTAATCAATTATAGTTTTCGTACTTTTTG
Found at i:81544525 original size:28 final size:28
Alignment explanation
Indices: 81544474--81544527 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
81544464 TAATTGATAC
* *
81544474 AATATTTATAGTTTGAGGATTCAATTCA
1 AATATTTAAAGTTTAAGGATTCAATTCA
81544502 AATATTTAAAAGTTTAAGGA-TCAATT
1 AATATTT-AAAGTTTAAGGATTCAATT
81544528 TACAATCAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 13 0.57
29 10 0.43
ACGTcount: A:0.41, C:0.06, G:0.13, T:0.41
Consensus pattern (28 bp):
AATATTTAAAGTTTAAGGATTCAATTCA
Found at i:81554323 original size:20 final size:20
Alignment explanation
Indices: 81554270--81554326 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
81554260 TCTCCGAACA
*
81554270 ATGGTTTTCAGTAAAAAAAC
1 ATGGTTATCAGTAAAAAAAC
* *
81554290 A---TAAACAG-AAAAAAAC
1 ATGGTTATCAGTAAAAAAAC
81554306 ATGGTTATCAGTAAAAAAAC
1 ATGGTTATCAGTAAAAAAAC
81554326 A
1 A
81554327 ATAAAGAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
16 9 0.32
17 4 0.14
19 5 0.18
20 10 0.36
ACGTcount: A:0.56, C:0.11, G:0.12, T:0.21
Consensus pattern (20 bp):
ATGGTTATCAGTAAAAAAAC
Found at i:81566648 original size:40 final size:40
Alignment explanation
Indices: 81566593--81566750 Score: 289
Period size: 40 Copynumber: 4.0 Consensus size: 40
81566583 TGGAAAAAAA
81566593 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
81566633 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
81566673 TATAACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
81566713 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
81566751 GTTACATCCG
Statistics
Matches: 114, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 114 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:81566775 original size:80 final size:79
Alignment explanation
Indices: 81566596--81566776 Score: 245
Period size: 80 Copynumber: 2.3 Consensus size: 79
81566586 AAAAAAATAT
* *
81566596 AACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATT
1 AACCGAGTAAAGT-CCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATT
*
81566661 CGTGCGGGTTATTAT
65 CGTGCGGGTTATTAC
* *
81566676 AACCGGGTTAAGTCTCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATT
1 AACCGAGTAAAGTC-CGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATT
* * *
81566741 TGTGCTGGTTGTTAC
65 CGTGCGGGTTATTAC
* *
81566756 ATCCGAGTCAAATTCCGAAGG
1 AACCGAGT-AAAGTCCGAAGG
81566777 TATTTATGTT
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 1 0.01
80 86 0.95
81 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (79 bp):
AACCGAGTAAAGTCCGAAGGCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTC
GTGCGGGTTATTAC
Found at i:81574567 original size:12 final size:12
Alignment explanation
Indices: 81574550--81574575 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81574540 CATTCCGAAG
81574550 TATATATATACA
1 TATATATATACA
81574562 TATATATATACA
1 TATATATATACA
81574574 TA
1 TA
81574576 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:81575104 original size:27 final size:28
Alignment explanation
Indices: 81575020--81575115 Score: 131
Period size: 27 Copynumber: 3.4 Consensus size: 28
81575010 CATGAGATTG
* * * *
81575020 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
81575049 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
81575077 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
81575104 GCACTGAGTGTG
1 GCACTAAGTGTG
81575116 TGGACTTAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.35
28 22 0.35
29 18 0.29
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:81575128 original size:27 final size:27
Alignment explanation
Indices: 81575048--81575130 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
81575038 TAAATTGTAC
* *
81575048 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
81575076 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
* *
81575103 AGCACTGAGTGTGTGGACTT-AATATAT
1 AGCACTAAGTGTG-CGACTTGAATATAT
81575130 A
1 A
81575131 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:81575130 original size:29 final size:27
Alignment explanation
Indices: 81575020--81575131 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
81575010 CATGAGATTG
** * *
81575020 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
81575049 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
81575077 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
* *
81575104 GCACTGAGTGTGTGGACTTAATATATAT
1 GCACTAAGTGTG-CGACTTAAT-TATAT
81575132 TTTTGAATCA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.31
28 28 0.39
29 21 0.30
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:81594845 original size:46 final size:42
Alignment explanation
Indices: 81594792--81595163 Score: 130
Period size: 46 Copynumber: 8.4 Consensus size: 42
81594782 GAATCGCCAC
*
81594792 CATCGGCACCTTGGCTTGACTCGGATATGAGGGAGGCTCGAGCAAG
1 CATCGGCACCTTGG--TG-CTCGGATATGAGGGAGCCTCGAG-AAG
* * * *
81594838 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGGAG
1 CATCGGCACCTTGGTGCTCGGATATGAGGGAGCCTCGAGAAG
* * * **
81594880 CATCGGCACCTTTGGTGGCTGGGAGTGGAT-CGGGAGCCCCGAGCCG
1 CATCGGCACC-TTGGT-GCTCGGA-T--ATGAGGGAGCCTCGAGAAG
* * * *
81594926 CATCGGCACCCTTGGTGGCTCAAGCATGTGCGGG-GACCTCGAGCAG
1 CATCGGCA-CCTTGGT-GCTC--GGATATGAGGGAG-CCTCGAGAAG
* * * * *
81594972 CATCGCACACCTTGGTGCTCTGATATG-CGGAGCCTCGATCAAC
1 CATCG-GCACCTTGGTGCTCGGATATGAGGGAGCCTCGA-GAAG
* * *
81595015 CACCGTCGGCACCTTGGTGCGGCTC-GATGTGCGGGAGCCATCG-GACACC
1 CA---TCGGCACCTTGGT---GCTCGGATATGAGGGAGCC-TCGAGA-A-G
* * * ** *
81595064 CAATCGGCACACCTTGGTGCTTGGATGTGTGGGAGCC-CTGACCAC
1 C-ATCGG--CACCTTGGTGCTCGGATATGAGGGAGCCTC-GAGAAG
* * * *
81595109 CATCGCCACCTTGG-GCT-GGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGTGCTCGGATATGAGGGAGCCTCGAGAAG
*
81595149 CACCGGCACCTTGGT
1 CATCGGCACCTTGGT
81595164 CTGATGTGCG
Statistics
Matches: 258, Mismatches: 37, Indels: 67
0.71 0.10 0.19
Matches are distributed among these distances:
40 30 0.12
41 4 0.02
42 28 0.11
43 32 0.12
44 12 0.05
45 19 0.07
46 76 0.29
47 29 0.11
48 13 0.05
49 14 0.05
50 1 0.00
ACGTcount: A:0.17, C:0.30, G:0.34, T:0.19
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCTCGGATATGAGGGAGCCTCGAGAAG
Found at i:81595091 original size:47 final size:40
Alignment explanation
Indices: 81595035--81595178 Score: 107
Period size: 40 Copynumber: 3.5 Consensus size: 40
81595025 ACCTTGGTGC
*
81595035 GGCTCGATGTGCGGGAGCCATCGGA-CACCCAATCGGCACACCTTG
1 GGCTGGATGTGCGGGAGCC--CGGACCA-CC-ATC-GC-CACCTTG
* *
81595080 GTGCTTGGATGTGTGGGAGCCCTGACCACCATCGCCACCTTG
1 G-GC-TGGATGTGCGGGAGCCCGGACCACCATCGCCACCTTG
* * * *
81595122 GGCTGGATGTGCGGGAGCCTC-GAGCAGCACCGGCACCTTG
1 GGCTGGATGTGCGGGAGCC-CGGACCACCATCGCCACCTTG
*
81595162 GTCT-GATGTGC-GGAGCC
1 GGCTGGATGTGCGGGAGCC
81595179 TCAACCTCGG
Statistics
Matches: 86, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
38 6 0.07
39 7 0.08
40 33 0.38
41 3 0.03
42 8 0.09
43 2 0.02
44 3 0.03
45 6 0.07
46 4 0.05
47 14 0.16
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.19
Consensus pattern (40 bp):
GGCTGGATGTGCGGGAGCCCGGACCACCATCGCCACCTTG
Found at i:81603305 original size:48 final size:48
Alignment explanation
Indices: 81603226--81603319 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
81603216 AGAGAATTCT
* *
81603226 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
81603274 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
81603320 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:81603744 original size:182 final size:178
Alignment explanation
Indices: 81603386--81603740 Score: 516
Period size: 182 Copynumber: 2.0 Consensus size: 178
81603376 ATAAGGAGTT
* * * * *
81603386 AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATGGTACAACGGGGGCTGTGGTGGTGCGGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATCGCACAACGGGGCCCGTGGTGGTGCGAG
* * * *
81603451 TGCGAGCTCCCAAGTGTTGGCGGCCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTGCCATGCCA
66 TGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCAT-CCATGCCA
*
81603516 TGCCATGCCATACTTCTTGTATTTATTTTGGGCCAACAGAAAAAATTTCTA
130 T--CATGCCATACTTCTTGTATTTATTTTGGGCCAACAAAAAAAATTTCTA
81603567 AGTTAAACACTTGGCCGTGCCGCCCCCTCGGGAAACATCGCACAACGGGGCCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCGCCCCC-CGGGAAACATCGCACAACGGGGCCCGTGGTGGTGCGA
81603632 GTGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCAT-CATGCCA
65 GTGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCCATGCCA
** *
81603696 T-ATTTCATTCGACTTCTTGTATTTCTTTTGGGCCAACAAAAAAAA
130 TCATGCCA-T--ACTTCTTGTATTTATTTTGGGCCAACAAAAAAAA
81603741 AATTCAATTA
Statistics
Matches: 157, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
177 4 0.03
178 1 0.01
180 40 0.25
181 27 0.17
182 85 0.54
ACGTcount: A:0.21, C:0.28, G:0.26, T:0.26
Consensus pattern (178 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATCGCACAACGGGGCCCGTGGTGGTGCGAG
TGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCCATGCCAT
CATGCCATACTTCTTGTATTTATTTTGGGCCAACAAAAAAAATTTCTA
Found at i:81604277 original size:58 final size:59
Alignment explanation
Indices: 81604186--81604306 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
81604176 CCCTCCCCAA
* * *
81604186 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* * *
81604245 TCCC-AAAGGTAGGATTCAGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATTG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
81604303 TCCC
1 TCCC
81604307 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:81604736 original size:24 final size:24
Alignment explanation
Indices: 81604708--81604754 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
81604698 AGGTTCCCGT
*
81604708 CGGTGCTCCGGTGAGCCATCCTGG
1 CGGTGCTCCGGCGAGCCATCCTGG
*
81604732 CGGTGGTCCGGCGAGCCATCCTG
1 CGGTGCTCCGGCGAGCCATCCTG
81604755 AAATATCGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.09, C:0.34, G:0.38, T:0.19
Consensus pattern (24 bp):
CGGTGCTCCGGCGAGCCATCCTGG
Found at i:81605022 original size:42 final size:42
Alignment explanation
Indices: 81604941--81605943 Score: 731
Period size: 42 Copynumber: 23.7 Consensus size: 42
81604931 TGGACATGCT
* ** * * *
81604941 GGAGCCTTGGACGTCATCGGCAACCTAGGACGTTTGTCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* *
81604984 GGAGCCTTAGGCACCATCGGCACCTAGCCCCTTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * **
81605026 GGA-CCTTCGGGCACCACCGGCACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTT-GGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* * **
81605068 GGAGCCTAGGGCACCATCGGCAACAC-AGGCCCCTGGTCACGCG
1 GGAGCCTTGGGCACCATCGGC-AC-CTAGGCCCTTGGTCGTGCG
* ** * *
81605111 GGAGCC-TCGATACCATCGGTAACCTAGGTCCTTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCG
* *** * *
81605153 AGAGCCTCAAGCACCATCGGAACCTAGGCCCGTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * *
81605195 GGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * * * **
81605238 GGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCATGTA
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
*
81605280 GGAG-CTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTT-GGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * *
81605323 AGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * **
81605365 GGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* * * *
81605407 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGTG
1 GGAGCCTTGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCG
* *
81605450 GGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * * *
81605493 AGAGCCTCGGG-ACCATTGGCACCTAGGCCATTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * *
81605534 GGAGCCTCGGCCACCATCGGCACCTTGGCCCTTGGAT-GTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* ** * *
81605576 GGAGCCTCGGGTTCCATCGACAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* *
81605619 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * ** * **
81605661 AGAACCTCAGGCACCATCGGCAACCTTGG-CCTTGACCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * * * * **
81605703 AGAACCTCGGGCGCCATCGGCACCTTGGTTCTTGGAT-GTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* * ** * *
81605745 AGAGCCTCGAACACCATTGACAACCTCA-GCCCTTGGTCGTGCG
1 GGAGCCTTGGGCACCATCGGC-ACCT-AGGCCCTTGGTCGTGCG
* * * *
81605788 AGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT-GTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCG
* * * * * **
81605831 GGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* * * ** * * **
81605873 GGAGCCTCGAGAAGTATTGGCACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* *
81605915 GGAGCCTCGGACACCATCGGCAACCTAGG
1 GGAGCCTTGGGCACCATCGGC-ACCTAGG
81605944 ACGTTGGATG
Statistics
Matches: 795, Mismatches: 135, Indels: 60
0.80 0.14 0.06
Matches are distributed among these distances:
41 43 0.05
42 450 0.57
43 298 0.37
44 4 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
GGAGCCTTGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
Found at i:81605114 original size:127 final size:126
Alignment explanation
Indices: 81604955--81605966 Score: 913
Period size: 127 Copynumber: 8.0 Consensus size: 126
81604945 CCTTGGACGT
* * * * *
81604955 CATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTTAGGCACCATCGGCACCTAGCCCCTTGGT
1 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGCACCATCGGCACCTAGGCCCTTGGT
* * ** *
81605020 CGTGCGGGA-CCTTCGGGCACCACCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGGCAC
65 CGTGCGGGAGCC-TCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* ** ** * *
81605082 CATCGGCAACAC-AGGCCCCTGGTCACGCGGGAGCCTCGATACCATCGGTAACCTAGGTCCTTGG
1 CATCGGCAAC-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGG-CACCTAGGCCCTTGG
* ** * * *
81605146 TCGTGCGAGAGCCTCAAGCACCATCGGAACCTAGGCCCGTGGTCGTGCGGGAGCCTCGGCCAC
64 TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* *
81605209 CATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGT
1 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCACCTAGGCCCTTGGT
* ** * * *
81605274 CATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCAC
65 CGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * **
81605337 CATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGA
1 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTAGGCCCTTGG-
* * *
81605401 T-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGGGCAC
64 TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* * * * *
81605464 CATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATTGGCACCTAGGCCATTGGTC
1 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTC
* * **
81605529 GTGCGGGAGCCTCGGCCACCATCGGCACCTTGGCCCTTGGAT-GTGCGGGAGCCTCGGGTTC
66 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCAC
* * *
81605590 CATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGA
1 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGG
* * * * ** * * *
81605654 TCGTGCGAGAACCTCAGGCACCATCGGCAACCTTGG-CCTTGACCGTGCGAGAACCTCGGGCGC
64 TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * * *
81605717 CATCGGC-ACCTTGGTTCTTGGAT-GTGCGAGAGCCTCGAACACCATTGACAACCTCA-GCCCTT
1 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGC-ACCT-AGGCCCTT
* * * *
81605779 GGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGC
62 GGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGC
*
81605843 AG
125 AC
* * ** * ** * * **
81605845 CATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAAGTATTGGCACCTTGGTGCTTGG
1 CATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCACCATCGGCACCTAGGCCCTTGG
* * * *
81605908 AT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
64 -TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
81605967 AGCAGCAGGG
Statistics
Matches: 731, Mismatches: 127, Indels: 54
0.80 0.14 0.06
Matches are distributed among these distances:
125 1 0.00
126 119 0.16
127 450 0.62
128 161 0.22
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (126 bp):
CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTC
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
Found at i:81605951 original size:85 final size:85
Alignment explanation
Indices: 81604979--81606002 Score: 908
Period size: 85 Copynumber: 12.1 Consensus size: 85
81604969 GACGTTTGTC
* *
81604979 GTGCGGGAGCCTTAGG-CACCATCGGC-ACCTAGCCCCTTGGTCGTGCGGGA-CCTTCGGGCACC
1 GTGCGGGAGCC-TCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGGGCACC
*
81605041 ACCGGCACCTTGGTGCTTGGAT
64 ATCGGCACCTTGGTGCTTGGAT
* * * ** **
81605063 GTGCGGGAGCCTAGGGCACCATCGGCAACAC-AGGCCCCTGGTCACGCGGGAGCCTC-GATACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAAC-CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* * *
81605126 TCGGTAACCTAGGTCCTTGG-T
65 TCGG-CACCTTGGTGCTTGGAT
* * * *
81605147 CGTGCGAGAGCCTC-AAGCACCATCGG-AACCTAGGCCCGTGGTCGTGCGGGAGCCTCGGCCACC
1 -GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
* *
81605210 ATCGGCAACCTAGGCGCTTGG-T
64 ATCGGC-ACCTTGGTGCTTGGAT
* * * ** * *
81605232 CGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACCA
1 -GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
* **
81605296 TCGGCAACCTAGGCCCTTGG-T
65 TCGGC-ACCTTGGTGCTTGGAT
* * *
81605317 CGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCA
1 -GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
81605381 TCGGCACCTTGGTGCTTGGAT
65 TCGGCACCTTGGTGCTTGGAT
* * * *
81605402 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGTGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * **
81605467 CGACAACCTAGGCCCTTGG-T
66 CGGC-ACCTTGGTGCTTGGAT
* * * * *
81605487 CGTGCGAGAGCCTCGG-GACCATTGGC-ACCTAGGCCATTGGTCGTGCGGGAGCCTCGGCCACCA
1 -GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
**
81605550 TCGGCACCTTGGCCCTTGGAT
65 TCGGCACCTTGGTGCTTGGAT
*** * *
81605571 GTGCGGGAGCCTCGGGTTCCATCGACAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* *
81605636 CGGCAACCTAGG-CCTT-GAT
66 CGGC-ACCTTGGTGCTTGGAT
* * * ** * * *
81605655 CGTGCGAGAACCTCAGG-CACCATCGGCAACCTTGG-CCTTGACCGTGCGAGAACCTCGGGCGCC
1 -GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
*
81605718 ATCGGCACCTTGGTTCTTGGAT
64 ATCGGCACCTTGGTGCTTGGAT
* * * * *
81605740 GTGCGAGAGCCTCGAACACCATTGACAACCTCA-GCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
81605804 TCGGCACCTTGGTGCCTTGGAT
65 TCGGCACCTTGGTG-CTTGGAT
* * * ** * * **
81605826 GTGCGGGAGCCTC-GAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAAGT
1 GTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
*
81605888 ATTGGCACCTTGGTGCTTGGAT
64 ATCGGCACCTTGGTGCTTGGAT
* * * * *
81605910 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
** * *
81605974 GGGGCACCCTGGTGGCTCGGAT
65 TCGGCACCTTGGT-GCTTGGAT
81605996 GTGCGGG
1 GTGCGGG
81606003 CTAAAGAAAA
Statistics
Matches: 787, Mismatches: 119, Indels: 66
0.81 0.12 0.07
Matches are distributed among these distances:
83 39 0.05
84 222 0.28
85 448 0.57
86 78 0.10
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCACCTTGGTGCTTGGAT
Found at i:81605996 original size:43 final size:43
Alignment explanation
Indices: 81605721--81606002 Score: 245
Period size: 43 Copynumber: 6.6 Consensus size: 43
81605711 GGGCGCCATC
* * * *
81605721 GGCACCTTGGT-TCTTGGATGTGCGAGAGCCTCGAACACCATT
1 GGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
* ** ** * * * *
81605763 GACAACCTCAG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCATC
1 GGC-ACCTTGGTGGCTTGGAT-GTGCGGGAGCCTCGAGCAGCATT
*
81605806 GGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGCAGCATT
1 GGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
* *
81605849 GGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGAAGTATT
1 GGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
* *
81605891 GGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCG-GACACCATC
1 GGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAG-CAGCATT
* ** * **
81605933 GGCAACCTAGGACG-TTGGATGTGCGGGTGCCTCGAGCAGCAGG
1 GGC-ACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
* *
81605976 GGCACCCTGGTGGCTCGGATGTGCGGG
1 GGCACCTTGGTGGCTTGGATGTGCGGG
81606003 CTAAAGAAAA
Statistics
Matches: 197, Mismatches: 33, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 81 0.41
43 112 0.57
44 3 0.02
ACGTcount: A:0.16, C:0.27, G:0.36, T:0.21
Consensus pattern (43 bp):
GGCACCTTGGTGGCTTGGATGTGCGGGAGCCTCGAGCAGCATT
Found at i:81613062 original size:47 final size:47
Alignment explanation
Indices: 81612984--81613580 Score: 930
Period size: 47 Copynumber: 12.6 Consensus size: 47
81612974 CCCTTCGGGA
* * * * * *
81612984 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81613031 CCTGTCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81613078 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613125 CTTATCACATATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613171 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81613220 CTTATCACATATATATACACTTTCACATTCATCACATAGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81613316 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613363 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81613412 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613461 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81613508 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613557 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
81613581 CACAATTATC
Statistics
Matches: 517, Mismatches: 26, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
45 7 0.01
46 36 0.07
47 241 0.47
48 9 0.02
49 224 0.43
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81613063 original size:25 final size:25
Alignment explanation
Indices: 81613035--81613112 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
81613025 CTCGGCCCTG
81613035 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
* ** *** *
81613060 TCACAT-CAGCCA-TTAGGC-CTCA
1 TCACATATATACACTTTCACATTCA
81613082 TCACATATATACACTTTCACATTCA
1 TCACATATATACACTTTCACATTCA
81613107 TCACAT
1 TCACAT
81613113 CGGCTATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 6 0.17
25 15 0.42
ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32
Consensus pattern (25 bp):
TCACATATATACACTTTCACATTCA
Found at i:81613212 original size:49 final size:49
Alignment explanation
Indices: 81612984--81613571 Score: 927
Period size: 49 Copynumber: 12.3 Consensus size: 49
81612974 CCCTTCGGGA
* * * * *
81612984 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
81613031 CCTGTCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81613078 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613125 CTTATCAC--ATATATACA-TTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613171 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81613220 CTTATCACATATATATACACTTTCACATTCATCACATAGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613269 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81613316 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613363 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81613412 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613461 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
81613508 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81613557 CTTATCACATATATA
1 CTTATCACATATATA
81613572 CATTCACATC
Statistics
Matches: 507, Mismatches: 25, Indels: 16
0.93 0.05 0.03
Matches are distributed among these distances:
46 37 0.07
47 230 0.45
48 9 0.02
49 231 0.46
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81613323 original size:96 final size:94
Alignment explanation
Indices: 81612984--81613580 Score: 930
Period size: 96 Copynumber: 6.3 Consensus size: 94
81612974 CCCTTCGGGA
* * * * * * * *
81612984 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
81613049 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
81613078 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
81613142 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
81613171 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
81613236 ACACTTTCACATTCATCACATAGGCCATTCGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
81613269 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
81613334 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
81613363 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
81613428 ACACTTTCACATTCATCACATCGGCCATTAGGA
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
81613461 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* *
81613526 ACTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
81613557 CTTATCACATATATACA--TTCACAT
1 CTTATCACATATATACACTTTCACAT
81613581 CACAATTATC
Statistics
Matches: 471, Mismatches: 23, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
93 35 0.07
94 106 0.23
95 46 0.10
96 194 0.41
97 9 0.02
98 81 0.17
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:81618493 original size:58 final size:59
Alignment explanation
Indices: 81618402--81618522 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
81618392 CCCTCCCCAA
* *
81618402 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* * * *
81618461 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATTG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
81618519 TCCC
1 TCCC
81618523 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:81618957 original size:24 final size:24
Alignment explanation
Indices: 81618918--81618964 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
81618908 TTAGGTTCCC
* *
81618918 GGCGGTGCTCTAGCGAGCCATCCT
1 GGCGGTGCTCCAGCGAGCAATCCT
*
81618942 GGCGGTGCTCCGGCGAGCAATCC
1 GGCGGTGCTCCAGCGAGCAATCC
81618965 CGAAATATCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.13, C:0.34, G:0.36, T:0.17
Consensus pattern (24 bp):
GGCGGTGCTCCAGCGAGCAATCCT
Found at i:81619229 original size:42 final size:42
Alignment explanation
Indices: 81619129--81620143 Score: 933
Period size: 42 Copynumber: 24.0 Consensus size: 42
81619119 CATATTGCTG
* * * * * *
81619129 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
81619172 GTTTGTCGTGTGGGAGCCTCGGGCACCATCGGCACCTA-GCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * **
81619213 CTTTGGTCTTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTG
1 C-TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
81619256 CTTGGAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * ** * *
81619299 CCTGGTCGCGCGGGAGCCTC-GATACCATCGGTAACCTACGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* ** *
81619341 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGAAATCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * *
81619383 CCTAGTCGTGCGGGAGCCTCGGACACCATCGGTAACTTAGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * *
81619426 CTTGGTCGGGCGGGAGCCTCGGCCACCATCAGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * ** * *
81619468 CCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
81619511 CTTGGTCGTGCGAGAGCCTCGGGCACTATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* **
81619553 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
81619595 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
81619638 CCTGGTCGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
81619681 CTTGGTCGTGCGAGAGCCTCGGG-ACCATTGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * *
81619722 ATTGGTCTTGTGGGAGCCTCAGCCACCATCGGCACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** *
81619764 CTTGGAT-GTGCGGGAGCCTCGGGTTCCATTGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
81619807 CCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC
* * * *
81619849 CTTGATTGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * * **
81619891 CTTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
**
81619933 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCA-GCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCT-AGGCC
* * *
81619976 CTTGGTCGTGCCGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC
* * * **
81620019 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCCT-GGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCC
* * * * * * **
81620061 CTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGAACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
*
81620103 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
81620144 ACGTCGGATG
Statistics
Matches: 805, Mismatches: 138, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
41 37 0.05
42 458 0.57
43 306 0.38
44 4 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:81619305 original size:85 final size:85
Alignment explanation
Indices: 81619183--81620143 Score: 977
Period size: 85 Copynumber: 11.4 Consensus size: 85
81619173 TTTGTCGTGT
* *
81619183 GGGAGCCTCGGGCACCATCGGC-ACCTA-GCCCTTTGGTCTTGCGGGAGCCTCGGGCACCACCGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TTGGTCGTGCGGGAGCCTCGGGCACCATCGG
**
81619246 CACCTTGGTGCTTGGATGTGC
65 CACCTTGGCCCTTGGATGTGC
* * * **
81619267 GGGAGCCTAGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-GATACCATCGGT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-
* **
81619331 AACCTACGCCCTTGG-TCGTGC
65 CACCTTGGCCCTTGGAT-GTGC
* * * * * * *
81619352 GAGAGCCTCGGGCACCATC-GAAATCTAGGCCCCTAGTCGTGCGGGAGCCTCGGACACCATCGGT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* * *
81619416 AACTTAGGCGCTTGG-TCGGGC
66 ACCTT-GGCCCTTGGAT-GTGC
* * * * ** * *
81619437 GGGAGCCTCGGCCACCATCAGC-ACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
81619501 AACCTAGGCCCTTGG-TCGTGC
66 -ACCTTGGCCCTTGGAT-GTGC
* *
81619522 GAGAGCCTCGGGCACTATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
**
81619586 ACCTTGGTACTTGGATGTGC
66 ACCTTGGCCCTTGGATGTGC
* *
81619606 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATTGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
81619671 AACCTAGGCCCTTGG-TCGTGC
66 -ACCTTGGCCCTTGGAT-GTGC
* * * * * * *
81619692 GAGAGCCTCGGG-ACCATTGGC-ACCTAGGCCATTGGTCTTGTGGGAGCCTCAGCCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
81619755 ACCTAGGCCCTTGGATGTGC
66 ACCTTGGCCCTTGGATGTGC
** * *
81619775 GGGAGCCTCGGGTTCCATTGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGT
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-
* *
81619840 AACCTAGG-CCTT-GATTGTGC
65 CACCTTGGCCCTTGGA-TGTGC
* * * * *
81619860 GAGAACCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGGC
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
**
81619924 ACCTTGGTGCTTGGATGTGC
66 ACCTTGGCCCTTGGATGTGC
** *
81619944 GGGAGCCTCGAACACCATCGGCAACCTCA-GCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGG
1 GGGAGCCTCGGGCACCATCGGCAACCT-AGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG
*
81620008 CACCTTGGTGCCTTGGATGTGC
65 CACCTTGG-CCCTTGGATGTGC
* * * * ** * * * *
81620030 GGGAGCCTCGAGCAGCATTGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* **
81620093 AACCTTGGTGCTTGGATGTGC
65 CACCTTGGCCCTTGGATGTGC
*
81620114 GGGAGCCTCGGACACCATCGGCAACCTAGG
1 GGGAGCCTCGGGCACCATCGGCAACCTAGG
81620144 ACGTCGGATG
Statistics
Matches: 733, Mismatches: 119, Indels: 49
0.81 0.13 0.05
Matches are distributed among these distances:
83 35 0.05
84 236 0.32
85 386 0.53
86 76 0.10
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (85 bp):
GGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
ACCTTGGCCCTTGGATGTGC
Found at i:81619314 original size:127 final size:127
Alignment explanation
Indices: 81619129--81620166 Score: 953
Period size: 127 Copynumber: 8.2 Consensus size: 127
81619119 CATATTGCTG
* * * * * * * *
81619129 CTTGGA-CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGTGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * **
81619193 GGCACCATCGGCACCTAGCCCTTTGGTCTTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTG
66 GGCACCATCGGCACCTAGCCC-TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * *
81619256 CTTGGAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
** * * ** *
81619319 GATACCATCGGTAACCTACGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGAAATCTAGGCC
66 GGCACCATCGG-CACCTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
* * * * * * *
81619383 CCTAG-TCGTGCGGGAGCCTCGGACACCATCGGTAACTTAGGCGCTTGGTCGGGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * ** * *
81619447 GCCACCATCAGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCC
66 GGCACCATCGGCACCTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* *
81619511 CTTGG-TCGTGCGAGAGCCTCGGGCACTATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* **
81619574 GGCACCATCGGCACCTTGGTACTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
66 GGCACCATCGGCACC-TAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * *
81619638 CCTGG-TCGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * *
81619702 GG-ACCATTGGCACCTAGGCCATTGGTCTTGTGGGAGCCTCAGCCACCATCGGCACCTAGGCC
66 GGCACCATCGGCACCTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
** * *
81619764 CTTGGAT-GTGCGGGAGCCTCGGGTTCCATTGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
* * * * * *
81619828 GGCACCATCGGTAACCTAGGCCTTGATTGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-C
66 GGCACCATCGG-CACCTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC
* * * **
81619891 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
** * * *
81619953 GAACACCATCGGCAACCTCAGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGCACCTTGGTG
65 GGGCACCATCGGC-ACCT-AGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-C
81620018 C
127 C
* * * * **
81620019 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCCT-GGTGCTTGGAT-GTGCGGGAGCCTC
1 CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
* * * * * * ** * *
81620081 GAGAAGCATTGGAACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGA
65 GGGCACCATCGGCACC-TAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGC
81620145 C
127 C
* * *
81620146 GTCGGAT-GTGCGGGTGCCTCG
1 CTTGGATCGTGCGGGAGCCTCG
81620167 AGCAGCAGGG
Statistics
Matches: 748, Mismatches: 137, Indels: 52
0.80 0.15 0.06
Matches are distributed among these distances:
126 126 0.17
127 459 0.61
128 157 0.21
129 6 0.01
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (127 bp):
CTTGGATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
GGCACCATCGGCACCTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCC
Found at i:81620194 original size:43 final size:43
Alignment explanation
Indices: 81619898--81620199 Score: 231
Period size: 43 Copynumber: 7.1 Consensus size: 43
81619888 GGCCTTGATC
* * * * * *
81619898 GTGCGAGAACCTCGGGCACCATCGGCACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGGCTTGGAT
* * * * * **
81619940 GTGCGGGAGCCTCGAACACCATCGGCAACCTCAG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCT-GGTGGCTTGGAT
* * * * * *
81619982 CGTGCCGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGGCTTGGAT
81620026 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGGCTTGGAT
* * *
81620068 GTGCGGGAGCCTCGAGAAGCATTGGAACCTTGGT-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGGCTTGGAT
* * * * * *
81620110 GTGCGGGAGCCTCG-GACACCATCGGCAACCTAG-GACGTCGGAT
1 GTGCGGGAGCCTCGAG-CAGCATTGGCACCCTGGTGGC-TTGGAT
* ** *
81620153 GTGCGGGTGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGGCTTGGAT
81620196 GTGC
1 GTGC
81620200 TGGCTAAAGA
Statistics
Matches: 210, Mismatches: 40, Indels: 19
0.78 0.15 0.07
Matches are distributed among these distances:
41 1 0.00
42 98 0.47
43 107 0.51
44 4 0.02
ACGTcount: A:0.16, C:0.29, G:0.36, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATTGGCACCCTGGTGGCTTGGAT
Found at i:81627502 original size:178 final size:177
Alignment explanation
Indices: 81627197--81627550 Score: 500
Period size: 178 Copynumber: 2.0 Consensus size: 177
81627187 GTAAGGAGTT
* *
81627197 AGTTAAACACTTGGCCGTGCCGCCCCCAGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGGGT
1 AGTTAAACACTTGGCCGTGCCGCCCCCAGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAGT
* * * * *
81627262 GCGACTCCCAAGTGTTGGCGGCCCGGGCACTTGTTCAATTTTCTGCCGTGCCGTGCCATGCCATG
66 GCGACTCCCAACTATTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCAT-CCATGCCAT-
*
81627327 CCATGCCA-T-ACTTCTTGTATTTGTTTTGGGCCAACA-AAAAAATTTCTA
129 --ATGCCATTCACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
*
81627375 AGTTAAACACTTGGCCGTGCCGCCCCTCGGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAG
1 AGTTAAACACTTGGCCGTGCCGCCCC-CAGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAG
*
81627440 TGCGAGCTCTCAACTATTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCAT-CATGCCAT
65 TGCGA-CTCCCAACTATTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCCATGCCAT
** *
81627504 ATTTCATTCGGCTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
129 ATGCCATTC-ACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
81627551 TCAATTAAAA
Statistics
Matches: 157, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
175 4 0.03
176 1 0.01
178 59 0.38
179 49 0.31
180 44 0.28
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.26
Consensus pattern (177 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCAGGAAACATCGCACAACGGGGGCCGTGGTGGTGCGAGT
GCGACTCCCAACTATTGGCGGCCCGGGCACTTGTTCAATTATCTACCGTGCCATCCATGCCATAT
GCCATTCACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
Found at i:81628082 original size:58 final size:59
Alignment explanation
Indices: 81627991--81628111 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
81627981 CCCTCCCCAA
* *
81627991 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
81628050 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
81628108 TCCC
1 TCCC
81628112 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:81633634 original size:37 final size:37
Alignment explanation
Indices: 81633584--81633655 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
81633574 TAGGAGTTCA
*
81633584 ATCCCGAATTCAACCTCACGATCTGGAGGCAATCCGG
1 ATCCCAAATTCAACCTCACGATCTGGAGGCAATCCGG
81633621 ATCCCAAATTCAACCTCACGATCTGGAGGCAATCC
1 ATCCCAAATTCAACCTCACGATCTGGAGGCAATCC
81633656 CGAAAGCTCT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.19
Consensus pattern (37 bp):
ATCCCAAATTCAACCTCACGATCTGGAGGCAATCCGG
Found at i:81637694 original size:46 final size:46
Alignment explanation
Indices: 81637642--81637817 Score: 160
Period size: 46 Copynumber: 3.8 Consensus size: 46
81637632 TATTTGGGCA
*
81637642 TCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
81637688 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTCA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
81637735 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * **
81637781 CCCGAGCTCGTTGATTTGAGTCTGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81637818 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 28 0.27
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:81640789 original size:15 final size:15
Alignment explanation
Indices: 81640751--81640810 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
81640741 GTATCGTATC
*
81640751 TTGGGTTTCTTTATT
1 TTGGATTTCTTTATT
* *
81640766 CTAGATTTCTTTATT
1 TTGGATTTCTTTATT
* ** *
81640781 TTGGGTTTCTCAATC
1 TTGGATTTCTTTATT
81640796 TTGGATTTCTTTATT
1 TTGGATTTCTTTATT
81640811 CGATTTTCTT
Statistics
Matches: 32, Mismatches: 13, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.13, C:0.12, G:0.15, T:0.60
Consensus pattern (15 bp):
TTGGATTTCTTTATT
Found at i:81643624 original size:46 final size:46
Alignment explanation
Indices: 81643548--81643725 Score: 157
Period size: 46 Copynumber: 3.8 Consensus size: 46
81643538 GATATTTGGG
* *
81643548 CATCCGAACTCGTTAAGTTGAGTCCAAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * *
81643594 CGTCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATGTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A
*
81643639 GGCATCC-AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 --CATCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * * * **
81643687 CACCCGAGCTCGTTGATTTGAGTCTGAGTTTGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81643726 GTGGGTTACA
Statistics
Matches: 104, Mismatches: 19, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.58
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:81646648 original size:101 final size:99
Alignment explanation
Indices: 81646446--81646630 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 99
81646436 CTGGTACGCA
* *
81646446 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTGTACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACAAGCGACCAATTATCCGGTGTACGTAGTAGCCAGCACTTA
*
81646511 GTACTACACACGTGACCTAACTATCTAATACACG
66 GTACTACACACGCGACCTAACTATCTAATACACG
* *
81646545 TAGTAGCCTGCACTTAGTACTACACAAGTGATCGAAGTTAT-CGG-GTACGCATAGTAGCCAGCA
1 TAGTAGCCTGCACTTAGTACTACACAAGCGA-CCAA-TTATCCGGTGTACG--TAGTAGCCAGCA
*
81646608 CTTAGTACTACACATGCGACCTA
62 CTTAGTACTACACACGCGACCTA
81646631 GCTACATATA
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
99 34 0.45
100 6 0.08
101 36 0.47
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACAAGCGACCAATTATCCGGTGTACGTAGTAGCCAGCACTTA
GTACTACACACGCGACCTAACTATCTAATACACG
Found at i:81647472 original size:30 final size:30
Alignment explanation
Indices: 81647436--81647496 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
81647426 TCCTTAACTC
81647436 AAACTTTGGAAAATTTACAATTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
81647466 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
81647496 A
1 A
81647497 GGTTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:81656927 original size:40 final size:40
Alignment explanation
Indices: 81656897--81657065 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
81656887 GGACTAAGAT
* *
81656897 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* *
81656937 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* ** *
81656977 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
81657017 CCGAAGGCATT-GTGTGA-TTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
81657055 CCGAAGGCATT
1 CCGAAGGCATT
81657066 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
38 28 0.24
39 5 0.04
40 85 0.72
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:81656981 original size:80 final size:79
Alignment explanation
Indices: 81656844--81657067 Score: 245
Period size: 80 Copynumber: 2.8 Consensus size: 79
81656834 TTGAATGCTG
* * * * * * *
81656844 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
81656908 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * *
81656924 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTT
* **
81656989 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * * *
81657004 TCCGGGTTATGTCCCGAAGGCATTGTGTGA-TTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
81657068 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
78 29 0.24
79 6 0.05
80 83 0.68
81 4 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:81674849 original size:39 final size:40
Alignment explanation
Indices: 81674645--81674867 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
81674635 TTGAATGCTG
* * * * * *
81674645 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
81674685 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
81674725 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
81674765 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
81674805 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
81674844 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
81674868 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:81674887 original size:79 final size:80
Alignment explanation
Indices: 81674720--81674902 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
81674710 GTGCGAGATA
* * *
81674720 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
81674785 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
81674800 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
81674864 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
81674879 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
81674903 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:81677632 original size:16 final size:16
Alignment explanation
Indices: 81677604--81677641 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81677594 CTTTTTAAAT
*
81677604 TTTTATAATTTATTTA
1 TTTTATAATTTATATA
81677620 TTTTA-AATATTATATA
1 TTTTATAAT-TTATATA
81677636 TTTTAT
1 TTTTAT
81677642 TTATTTTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTATAATTTATATA
Found at i:81677649 original size:25 final size:24
Alignment explanation
Indices: 81677596--81677649 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
81677586 TCTTAATCCT
*
81677596 TTTTAAATTTTTATAATTTATTTA
1 TTTTAAATTTATATAATTTATTTA
*
81677620 TTTTAAATATTATATATTTTATTTA
1 TTTTAAAT-TTATATAATTTATTTA
81677645 TTTTA
1 TTTTA
81677650 CCATAAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTAAATTTATATAATTTATTTA
Found at i:81677736 original size:26 final size:26
Alignment explanation
Indices: 81677697--81677793 Score: 92
Period size: 26 Copynumber: 3.7 Consensus size: 26
81677687 TATATATTAT
* *
81677697 TTTTATTTTTTATTATATTATTTACA
1 TTTTATTATATATTATATTATTTACA
* *
81677723 TTTTATTATATATTTTGATT-TATACA
1 TTTTATTATATATTAT-ATTATTTACA
*
81677749 TTTTATTATATA-TATTATTCATTATA-T
1 TTTTATTATATATTA-TATT-ATT-TACA
81677776 TTTTATTATATATTATAT
1 TTTTATTATATATTATAT
81677794 AATTATCTAT
Statistics
Matches: 58, Mismatches: 7, Indels: 11
0.76 0.09 0.14
Matches are distributed among these distances:
25 4 0.07
26 31 0.53
27 19 0.33
28 4 0.07
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (26 bp):
TTTTATTATATATTATATTATTTACA
Found at i:81677772 original size:16 final size:14
Alignment explanation
Indices: 81677707--81677788 Score: 66
Period size: 14 Copynumber: 6.1 Consensus size: 14
81677697 TTTTATTTTT
* *
81677707 TATTATATTATTTA
1 TATTTTATTATATA
*
81677721 CATTTTATTATATA
1 TATTTTATTATATA
*
81677735 T-TTTGATT-TATA
1 TATTTTATTATATA
*
81677747 CATTTTATTATATA
1 TATTTTATTATATA
81677761 TA--TTATTCAT-TA
1 TATTTTATT-ATATA
81677773 TATTTTTATTATATA
1 TA-TTTTATTATATA
81677788 T
1 T
81677789 TATATAATTA
Statistics
Matches: 53, Mismatches: 8, Indels: 13
0.72 0.11 0.18
Matches are distributed among these distances:
12 13 0.25
13 14 0.26
14 18 0.34
15 8 0.15
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (14 bp):
TATTTTATTATATA
Found at i:81677799 original size:18 final size:16
Alignment explanation
Indices: 81677685--81677807 Score: 61
Period size: 14 Copynumber: 8.1 Consensus size: 16
81677675 AAAAATTTAG
*
81677685 TATATA-TATTATTTT
1 TATATATTATTATTAT
* *
81677700 TATTTTTTATTA-TAT
1 TATATATTATTATTAT
* *
81677715 TATTTA-CATT-TTAT
1 TATATATTATTATTAT
81677729 TATATATT-TTGA-T-T
1 TATATATTATT-ATTAT
*
81677743 TATACATT-TTATTA-
1 TATATATTATTATTAT
81677757 TATATATTATTCATTA-
1 TATATATTATT-ATTAT
*
81677773 TAT-TTTTATTATATAT
1 TATATATTATTAT-TAT
81677789 TATATAATTATCTATTAT
1 TATAT-ATTAT-TATTAT
81677807 T
1 T
81677808 TTTTATTAGG
Statistics
Matches: 83, Mismatches: 11, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
13 1 0.01
14 33 0.40
15 22 0.27
16 15 0.18
17 1 0.01
18 8 0.10
19 3 0.04
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (16 bp):
TATATATTATTATTAT
Found at i:81677805 original size:40 final size:39
Alignment explanation
Indices: 81677694--81677807 Score: 101
Period size: 40 Copynumber: 2.9 Consensus size: 39
81677684 GTATATATAT
* *
81677694 TATTTTTATTTTTTATTATATTATT-TAC-ATT-TTATTA
1 TATTTTTATTATATATTATATTATTAT-CTATTATTATTA
* * *
81677731 TATATTTTGATTTATACATTTTATTA-TATATATTATTCATTA
1 TAT-TTTT-A-TTATATATTATATTATTATCTATTATT-ATTA
*
81677773 TATTTTTATTATATATTATATAATTATCTATTATT
1 TATTTTTATTATATATTATATTATTATCTATTATT
81677808 TTTTATTAGG
Statistics
Matches: 60, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
37 3 0.05
38 4 0.07
39 14 0.23
40 26 0.43
41 6 0.10
42 7 0.12
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.64
Consensus pattern (39 bp):
TATTTTTATTATATATTATATTATTATCTATTATTATTA
Found at i:81677806 original size:25 final size:25
Alignment explanation
Indices: 81677725--81677807 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
81677715 TATTTACATT
* *
81677725 TTATTATATATT-TTGATTTATACATT
1 TTATTATATATTATT-AATTATAC-TA
* * *
81677751 TTATTATATATATTATTCATTATATTT
1 TTA-T-TATATATTATTAATTATACTA
81677778 TTATTATATATTATATAATTAT-CTA
1 TTATTATATATTAT-TAATTATACTA
81677803 TTATT
1 TTATT
81677808 TTTTATTAGG
Statistics
Matches: 47, Mismatches: 6, Indels: 9
0.76 0.10 0.15
Matches are distributed among these distances:
25 16 0.34
26 10 0.21
27 6 0.13
28 13 0.28
29 2 0.04
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (25 bp):
TTATTATATATTATTAATTATACTA
Found at i:81677811 original size:32 final size:34
Alignment explanation
Indices: 81677685--81677815 Score: 98
Period size: 32 Copynumber: 3.9 Consensus size: 34
81677675 AAAAATTTAG
*
81677685 TATATATATTATT-TTTAT-TTTTTATTATATTAT
1 TATATATATTATTCATTATATTTTTATTATA-TAT
* * *
81677718 T-TACATTTTATT-A-TATATTTTGATTTATACATTTTAT
1 TATATATATTATTCATTATATTTTTA-TTAT--A---TAT
81677755 TATATATATTATTCATTATATTTTTATTATATAT
1 TATATATATTATTCATTATATTTTTATTATATAT
81677789 TATATA-ATTA-TCTATTAT-TTTTTATTA
1 TATATATATTATTC-ATTATATTTTTATTA
81677816 GGTATAATTT
Statistics
Matches: 81, Mismatches: 7, Indels: 21
0.74 0.06 0.19
Matches are distributed among these distances:
31 3 0.04
32 25 0.31
33 14 0.17
34 9 0.11
35 1 0.01
37 6 0.07
38 9 0.11
39 5 0.06
40 9 0.11
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (34 bp):
TATATATATTATTCATTATATTTTTATTATATAT
Found at i:81692778 original size:34 final size:35
Alignment explanation
Indices: 81692716--81692781 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
81692706 TGATAAATAC
*
81692716 ATTATTTATGTGAGATTGATCTGACGAGAATATAT
1 ATTATTTATGTGAAATTGATCTGACGAGAATATAT
*
81692751 ATTATTTATGTTAAATTG-TCTGACGAGAATA
1 ATTATTTATGTGAAATTGATCTGACGAGAATA
81692782 AAGAATGTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 13 0.45
35 16 0.55
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (35 bp):
ATTATTTATGTGAAATTGATCTGACGAGAATATAT
Found at i:81693579 original size:44 final size:44
Alignment explanation
Indices: 81693529--81693742 Score: 367
Period size: 44 Copynumber: 4.9 Consensus size: 44
81693519 GGGTGTTACA
* *
81693529 TCTGTATTGACAGAGAGCAGGTCGAAGATGATAGATTTGGCGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
*
81693573 TCTGTATTGACAGAAAGCAGATCGAAGATGACAGATTTGGCGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
81693617 TCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
*
81693661 TCTATATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
1 TCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
*
81693705 TCTGTATTGACAGAAAGCAGATCGAAGAT-AGCAGATTT
1 TCTGTATTGACAGAGAGCAGATCGAAGATGA-CAGATTT
81693743 CTCTGTATTG
Statistics
Matches: 162, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
43 1 0.01
44 161 0.99
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (44 bp):
TCTGTATTGACAGAGAGCAGATCGAAGATGACAGATTTGGCGTC
Found at i:81695418 original size:16 final size:16
Alignment explanation
Indices: 81695390--81695427 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
81695380 CTTTTTAAAT
*
81695390 TTTTATAATTTATTTA
1 TTTTATAATTTATATA
81695406 TTTTA-AATATTATATA
1 TTTTATAAT-TTATATA
81695422 TTTTAT
1 TTTTAT
81695428 TTATTTTACC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
TTTTATAATTTATATA
Found at i:81695435 original size:25 final size:24
Alignment explanation
Indices: 81695382--81695435 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
81695372 TTTTAATCCT
*
81695382 TTTTAAATTTTTATAATTTATTTA
1 TTTTAAATTTATATAATTTATTTA
*
81695406 TTTTAAATATTATATATTTTATTTA
1 TTTTAAAT-TTATATAATTTATTTA
81695431 TTTTA
1 TTTTA
81695436 CCATAAACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 8 0.30
25 19 0.70
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTAAATTTATATAATTTATTTA
Found at i:81695482 original size:12 final size:12
Alignment explanation
Indices: 81695465--81695574 Score: 70
Period size: 12 Copynumber: 9.2 Consensus size: 12
81695455 ATGTAAAAAA
81695465 ATTATTATATAT
1 ATTATTATATAT
81695477 ATTATT-T-T-T
1 ATTATTATATAT
*
81695486 ATT-TTGTATTAT
1 ATTATTATA-TAT
*
81695498 ATTATT-TACAT
1 ATTATTATATAT
*
81695509 TTTATTATATAT
1 ATTATTATATAT
* *
81695521 TTTGATTTATACAT
1 ATT-A-TTATATAT
*
81695535 TTTATTATATAT
1 ATTATTATATAT
81695547 ATTATTCAT-TAT
1 ATTATT-ATATAT
*
81695559 ATTTTTATTATAT
1 ATTATTA-TATAT
81695572 ATT
1 ATT
81695575 TATAATTATC
Statistics
Matches: 80, Mismatches: 7, Indels: 21
0.74 0.06 0.19
Matches are distributed among these distances:
8 2 0.03
9 5 0.06
10 1 0.01
11 10 0.12
12 40 0.50
13 12 0.15
14 10 0.12
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:81695499 original size:21 final size:20
Alignment explanation
Indices: 81695469--81695528 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
81695459 AAAAAAATTA
*
81695469 TTATATATATTATTTTTATTT
1 TTAT-TATATTATTTTCATTT
*
81695490 TGTATTATATTATTTACA-TT
1 T-TATTATATTATTTTCATTT
*
81695510 TTATTATA-TATTTTGATTT
1 TTATTATATTATTTTCATTT
81695529 ATACATTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
18 6 0.18
19 9 0.27
20 3 0.09
21 12 0.36
22 3 0.09
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATTATATTATTTTCATTT
Found at i:81695521 original size:26 final size:27
Alignment explanation
Indices: 81695482--81695583 Score: 86
Period size: 26 Copynumber: 3.8 Consensus size: 27
81695472 TATATATTAT
* *
81695482 TTTTATTTTGTATTAT-ATTATTTACA
1 TTTTATTATATATTATAATTATTTACA
* * *
81695508 TTTTATTATATATTTTGATT-TATACA
1 TTTTATTATATATTATAATTATTTACA
* *
81695534 TTTTATTATATA-TATTATTCATTATA-T
1 TTTTATTATATATTATAATT-ATT-TACA
81695561 TTTTATTATATATTTATAATTAT
1 TTTTATTATATA-TTATAATTAT
81695584 CTATTATTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
25 5 0.08
26 30 0.49
27 16 0.26
28 4 0.07
29 6 0.10
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (27 bp):
TTTTATTATATATTATAATTATTTACA
Found at i:81695557 original size:16 final size:14
Alignment explanation
Indices: 81695466--81695573 Score: 73
Period size: 14 Copynumber: 7.8 Consensus size: 14
81695456 TGTAAAAAAA
81695466 TTATTATATATATT
1 TTATTATATATATT
* * *
81695480 ATTTTTATTTTGTATT
1 -TTATTA-TATATATT
* * *
81695496 ATATTATTTACATT
1 TTATTATATATATT
81695510 TTATTATATAT-TT
1 TTATTATATATATT
* *
81695523 TGATT-TATACATT
1 TTATTATATATATT
81695536 TTATTATATATA--
1 TTATTATATATATT
81695548 TTATTCAT-TATATTT
1 TTATT-ATATATA-TT
81695563 TTATTATATAT
1 TTATTATATAT
81695574 TTATAATTAT
Statistics
Matches: 71, Mismatches: 14, Indels: 16
0.70 0.14 0.16
Matches are distributed among these distances:
12 13 0.18
13 14 0.20
14 21 0.30
15 17 0.24
16 6 0.08
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (14 bp):
TTATTATATATATT
Found at i:81695598 original size:31 final size:34
Alignment explanation
Indices: 81695537--81695599 Score: 89
Period size: 31 Copynumber: 1.9 Consensus size: 34
81695527 TTATACATTT
81695537 TATTATATATATTATTCATTATATTTTTATTATA
1 TATTATATATATTATTCATTATATTTTTATTATA
81695571 TATT-TATA-ATTA-TCTATTAT-TTTTTATTA
1 TATTATATATATTATTC-ATTATATTTTTATTA
81695600 GGTATAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
31 11 0.39
32 9 0.32
33 4 0.14
34 4 0.14
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (34 bp):
TATTATATATATTATTCATTATATTTTTATTATA
Found at i:81698932 original size:50 final size:50
Alignment explanation
Indices: 81698859--81699091 Score: 298
Period size: 50 Copynumber: 4.7 Consensus size: 50
81698849 ATACTAGGGT
*
81698859 TATATG-G-GCTAGCGTAAGACCATGTTTGGAACATGGCATCGGCACCGA
1 TATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGA
*
81698907 TATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACTGA
1 TATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGA
* * *
81698957 TATATGAGAGCTAGTGTAAGATCATGTCT-GAGACATGGCATCGAC-CTCGA
1 TATATGAGAGCTAGTGTAAGACCATGTTTGGA-ACATGGCATCGGCAC-CGA
* ** * *
81699007 CAGGTG-G-GCTAGTATAAGACCATGTTTGGAACATGGCATCGGCACTGA
1 TATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGA
* *
81699055 TATATGAGAGCCAGTGTAAGACCATGTTTGGGACATG
1 TATATGAGAGCTAGTGTAAGACCATGTTTGGAACATG
81699092 TTATCAACAT
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
48 40 0.25
49 9 0.06
50 108 0.69
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (50 bp):
TATATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCACCGA
Found at i:81704484 original size:93 final size:93
Alignment explanation
Indices: 81704353--81704523 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
81704343 GCCCATAAGT
* * *
81704353 GAACTCGGACTCAACTCAATGAGATCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81704418 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
81704446 GAACTCGGACTCAACTCTACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
81704511 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81704524 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGATCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:81704520 original size:46 final size:46
Alignment explanation
Indices: 81704345--81704520 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
81704335 TGTAACCCGC
* * * * *
81704345 CCATAAGTGAACTCGGACTCAACTCAATGAGATCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
* *
81704391 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCAT
* * * *
81704441 --TTCA-CGAACTCGGACTCAACTCTACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
81704484 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81704521 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
Found at i:81709170 original size:47 final size:47
Alignment explanation
Indices: 81709111--81709232 Score: 226
Period size: 47 Copynumber: 2.6 Consensus size: 47
81709101 GCATTGGCAC
81709111 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
81709158 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
81709205 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATATCATGTAAGACCATG
81709233 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (47 bp):
TAAGATAAGGATATCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:81709352 original size:55 final size:55
Alignment explanation
Indices: 81709211--81709407 Score: 224
Period size: 55 Copynumber: 3.6 Consensus size: 55
81709201 TTGGTAAGAT
* * * *
81709211 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGG-A
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* * *
81709265 AAGGAAAACATGTAAGACCATGTCGAA-ACATGGCATTGATGAGTTACTATAAGGCA
1 AAGGATACCATGTAAGACCATG-CCAAGACATGGCATTGATGAGTT-CTATAAGGCA
* * * *
81709321 AAGG-TCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC-
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
* *
81709373 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
81709408 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 39 0.32
55 40 0.33
56 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCA
Found at i:81709419 original size:53 final size:54
Alignment explanation
Indices: 81709211--81709418 Score: 215
Period size: 53 Copynumber: 3.9 Consensus size: 54
81709201 TTGGTAAGAT
* * * *
81709211 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
81709265 AAGGAAAACATGTAAGACCATGTCGAA-ACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATG-CCAAGACATGGCATTGATAAGTT-CTATAAGGC
* * * * *
81709320 AAAGG-TCCCATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
* * * *
81709373 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTC
81709419 AAAAAGGAAA
Statistics
Matches: 128, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
52 4 0.03
53 41 0.32
54 39 0.30
55 40 0.31
56 4 0.03
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGC
Found at i:81709435 original size:108 final size:109
Alignment explanation
Indices: 81709219--81709436 Score: 271
Period size: 108 Copynumber: 2.0 Consensus size: 109
81709209 ATAAGGATAT
*
81709219 CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGAAAGGAAAACATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGAAAGGAAAACACGTAAGACC
* * * * *
81709284 ATGTCGAAACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCGAAACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
* ** * * * *
81709328 CATGTAAGACTATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGAAAGGAAAACACGTAAGACC
*
81709392 ATGTC-AAGACATGGCAATGGTAAGTT-CAAAAAGGAAAAGGGTCC
66 ATGTCGAA-ACATGGCAATGATAAGTTACAAAAAGGAAAA-GGTCC
81709436 C
1 C
81709437 GAGTAATCCA
Statistics
Matches: 93, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
107 11 0.12
108 48 0.52
109 34 0.37
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTAATAAGTTCTATAAGGAAAGGAAAACACGTAAGACC
ATGTCGAAACATGGCAATGATAAGTTACAAAAAGGAAAAGGTCC
Found at i:81715369 original size:47 final size:47
Alignment explanation
Indices: 81715310--81715431 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
81715300 GCATTGGCAC
* *
81715310 TAAGACAAGGATACCATGTATGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* **
81715357 TAAGATAAGGATACCATGTAAGATCATGTTTGGAATTTGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
*
81715404 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
81715432 CCAAGGCATG
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.30
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:81715479 original size:54 final size:54
Alignment explanation
Indices: 81715413--81715629 Score: 238
Period size: 54 Copynumber: 4.0 Consensus size: 54
81715403 GTAAGATAAG
*
81715413 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAA
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * * *
81715467 GAAATCATGTAAGACCATGTCAAAACATGGCATTGATGAGTTACTATAAGGAAAA
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGAAAA
* * * * * * * *
81715522 GGTCTCATGTAAGTCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * * * * * *
81715575 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAAA
1 GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
81715629 G
1 G
81715630 GTTCCCGAGT
Statistics
Matches: 134, Mismatches: 27, Indels: 4
0.81 0.16 0.02
Matches are distributed among these distances:
53 42 0.31
54 46 0.34
55 46 0.34
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (54 bp):
GATATCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
Found at i:81715540 original size:55 final size:54
Alignment explanation
Indices: 81715417--81715631 Score: 220
Period size: 55 Copynumber: 4.0 Consensus size: 54
81715407 GATAAGGATA
* * ***
81715417 TCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAAGAAA
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTC
* *
81715471 TCATGTAAGACCATGTCAAAACATGGCATTGATGAGTTACTATAAGGAAAAGGTC
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGAAAAGGTC
* * * *
81715526 TCATGTAAGTCCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-CAAGGATAC
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGG-T-C
* * * * * * *
81715580 -CACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAAAGGT
1 TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGT
81715632 TCCCGAGTAA
Statistics
Matches: 135, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
52 4 0.03
53 39 0.29
54 42 0.31
55 50 0.37
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.22
Consensus pattern (54 bp):
TCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTC
Found at i:81721017 original size:13 final size:13
Alignment explanation
Indices: 81720999--81721026 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81720989 TTGCACGGGG
81720999 TGCCATTATCTAT
1 TGCCATTATCTAT
81721012 TGCCATTATCTAT
1 TGCCATTATCTAT
81721025 TG
1 TG
81721027 TGTCAGATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.46
Consensus pattern (13 bp):
TGCCATTATCTAT
Found at i:81723232 original size:42 final size:42
Alignment explanation
Indices: 81723186--81723278 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 42
81723176 AGATCGTGTT
* *
81723186 TGGGACATCGGCATC-ATATTTGATTTCGTGTAAAACC-CTGTC
1 TGGGACAT-GGCATCGATATTTGATTACATGTAAAACCAC-GTC
* *
81723228 TGGGATAGTGGCATCGATATTTGATTACATGTAAGACCACGTC
1 TGGGACA-TGGCATCGATATTTGATTACATGTAAAACCACGTC
81723271 TGGGACAT
1 TGGGACAT
81723279 TGGAATTGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 13 0.30
43 29 0.67
44 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGGGACATGGCATCGATATTTGATTACATGTAAAACCACGTC
Found at i:81723249 original size:43 final size:42
Alignment explanation
Indices: 81723195--81723275 Score: 110
Period size: 43 Copynumber: 1.9 Consensus size: 42
81723185 TTGGGACATC
* *
81723195 GGCATCATATTTGATTTCGTGTAAAACC-CTGTCTGGGATAGT
1 GGCATCATATTTGATTACATGTAAAACCAC-GTCTGGGATAGT
*
81723237 GGCATCGATATTTGATTACATGTAAGACCACGTCTGGGA
1 GGCATC-ATATTTGATTACATGTAAAACCACGTCTGGGA
81723276 CATTGGAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
42 6 0.18
43 27 0.79
44 1 0.03
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GGCATCATATTTGATTACATGTAAAACCACGTCTGGGATAGT
Found at i:81724217 original size:15 final size:13
Alignment explanation
Indices: 81724184--81724216 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
81724174 GAGACACGGG
81724184 CGTGTGTCTCAGC
1 CGTGTGTCTCAGC
81724197 CGTGTGTCTCAGC
1 CGTGTGTCTCAGC
81724210 CGTGTGT
1 CGTGTGT
81724217 GACGCAGGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.27, G:0.33, T:0.33
Consensus pattern (13 bp):
CGTGTGTCTCAGC
Found at i:81726514 original size:34 final size:34
Alignment explanation
Indices: 81726471--81726535 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
81726461 TACCATAAGA
*
81726471 TAAAATGGGATCATATTGGGAGAGCCTATTTGGG
1 TAAAATGGGATCATATTGGGAGAGCATATTTGGG
81726505 TAAAATGGGATCATATTGGGAGAGCATATTT
1 TAAAATGGGATCATATTGGGAGAGCATATTT
81726536 AACCCAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (34 bp):
TAAAATGGGATCATATTGGGAGAGCATATTTGGG
Found at i:81727098 original size:16 final size:16
Alignment explanation
Indices: 81727085--81727120 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
81727075 AGAAAATTGT
81727085 TTAATTAAAAAATTAA
1 TTAATTAAAAAATTAA
81727101 TTAATTAATTAAAATTAA
1 TTAATTAA--AAAATTAA
81727119 TT
1 TT
81727121 TATGATGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAATTAAAAAATTAA
Found at i:81729336 original size:20 final size:20
Alignment explanation
Indices: 81729298--81729336 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
81729288 GAGGTGACCT
* *
81729298 GTTAACTAGCCATATTGGAC
1 GTTAACTAGCAATAGTGGAC
*
81729318 GTTAACTAGCAATGGTGGA
1 GTTAACTAGCAATAGTGGA
81729337 ACCCAATTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (20 bp):
GTTAACTAGCAATAGTGGAC
Found at i:81730262 original size:29 final size:30
Alignment explanation
Indices: 81730187--81730268 Score: 85
Period size: 29 Copynumber: 2.8 Consensus size: 30
81730177 TTTTGATAAT
* *
81730187 GTTAGTGACTGGTTGGTTATTTTTCTAAAG
1 GTTAGTGACTGATTTGTTATTTTTCTAAAG
* * * * *
81730217 TTTAATGGCTGAGTTGTAATTTTTC-AAAG
1 GTTAGTGACTGATTTGTTATTTTTCTAAAG
*
81730246 GTTAGTGACTGTTTTGTTATTTT
1 GTTAGTGACTGATTTGTTATTTT
81730269 AATCAAAGTT
Statistics
Matches: 39, Mismatches: 13, Indels: 1
0.74 0.25 0.02
Matches are distributed among these distances:
29 21 0.54
30 18 0.46
ACGTcount: A:0.21, C:0.06, G:0.23, T:0.50
Consensus pattern (30 bp):
GTTAGTGACTGATTTGTTATTTTTCTAAAG
Found at i:81733614 original size:34 final size:34
Alignment explanation
Indices: 81733576--81733643 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
81733566 TCACGATAAA
81733576 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
1 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
81733610 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
1 TCAAATAATAAATTGATCCTATTTAAAATTCTAT
81733644 CTTATCTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.12, G:0.03, T:0.41
Consensus pattern (34 bp):
TCAAATAATAAATTGATCCTATTTAAAATTCTAT
Found at i:81734233 original size:18 final size:18
Alignment explanation
Indices: 81734210--81734244 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81734200 AACAATTTTA
*
81734210 TTTCTTTTCTTTCTCATT
1 TTTCTTATCTTTCTCATT
81734228 TTTCTTATCTTTCTCAT
1 TTTCTTATCTTTCTCAT
81734245 CATTATATTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.23, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTCTTATCTTTCTCATT
Found at i:81734313 original size:18 final size:18
Alignment explanation
Indices: 81734292--81734340 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
81734282 GTCGTCGTCG
81734292 TCTTCATCATCATAATAA
1 TCTTCATCATCATAATAA
* * *
81734310 TCTTCATCGTAATAATAT
1 TCTTCATCATCATAATAA
81734328 TCTTCATCATCAT
1 TCTTCATCATCAT
81734341 CGTCATCACC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.33, C:0.22, G:0.02, T:0.43
Consensus pattern (18 bp):
TCTTCATCATCATAATAA
Found at i:81747300 original size:73 final size:73
Alignment explanation
Indices: 81747181--81747328 Score: 296
Period size: 73 Copynumber: 2.0 Consensus size: 73
81747171 TCATAATGAC
81747181 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTGTAACGCCCCAAACTTGATCTTTAA
1 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTGTAACGCCCCAAACTTGATCTTTAA
81747246 GGAGGACT
66 GGAGGACT
81747254 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTGTAACGCCCCAAACTTGATCTTTAA
1 TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTGTAACGCCCCAAACTTGATCTTTAA
81747319 GGAGGACT
66 GGAGGACT
81747327 TA
1 TA
81747329 GGATTGGCCC
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 75 1.00
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (73 bp):
TAATTAATTTAATTCTATTTCCAAACTTCAATTATTCCCTGTAACGCCCCAAACTTGATCTTTAA
GGAGGACT
Found at i:81749257 original size:38 final size:39
Alignment explanation
Indices: 81749041--81749245 Score: 315
Period size: 39 Copynumber: 5.3 Consensus size: 39
81749031 CAGGACTTTA
* * *
81749041 AGCCCGGATATAATACCAGCAC-AAAGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
81749079 AGCCCGAATATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
*
81749118 AGCCCGGGTATAACACCAGCACGAATGCCTTCGGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
81749157 AGCTCGGATATAACACCAGCACGAATGCCTTCAGGACTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
* *
81749196 AGCCCAGATATAACACCAGCAC-AATGCCTTCGGGAGTT
1 AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
81749234 AGCCCGGATATA
1 AGCCCGGATATA
81749246 TATCTCACAC
Statistics
Matches: 152, Mismatches: 14, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
38 45 0.30
39 107 0.70
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.19
Consensus pattern (39 bp):
AGCCCGGATATAACACCAGCACGAATGCCTTCGGGACTT
Found at i:81757047 original size:19 final size:20
Alignment explanation
Indices: 81757023--81757060 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
81757013 GATACCACCA
81757023 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
81757042 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
81757061 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:81757449 original size:93 final size:93
Alignment explanation
Indices: 81757290--81757460 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81757280 GCCCCTAAGT
* *
81757290 GAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCAA
81757355 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
81757383 GAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCAA
81757448 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81757461 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACACTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81757457 original size:46 final size:46
Alignment explanation
Indices: 81757285--81757457 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
81757275 AACCCGCCCC
* * * *
81757285 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGCTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTTGCATCCA
* * *
81757331 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ACTTGCATCCA
* * * *
81757379 TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTTGCATCCA
81757424 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
81757458 TGCTCAACCA
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACACTTGCATCCA
Found at i:81759569 original size:8 final size:8
Alignment explanation
Indices: 81759556--81759585 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
81759546 ACTTACTTGA
81759556 AAAATGGG
1 AAAATGGG
81759564 AAAATGGG
1 AAAATGGG
81759572 AAAATGGG
1 AAAATGGG
81759580 AAAATG
1 AAAATG
81759586 ATACAAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.33, T:0.13
Consensus pattern (8 bp):
AAAATGGG
Found at i:81761404 original size:43 final size:42
Alignment explanation
Indices: 81761255--81761400 Score: 129
Period size: 44 Copynumber: 3.4 Consensus size: 42
81761245 TATGTGTTTT
81761255 CGTGTAAGACCACGTCTAGGAC-GTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTAGGACAG-TGGCATCGTA-TT-TGA-TTA
* * * * *
81761299 CGTGTAAGATCATGTCTAGGACA-TCAGTATCGTATTTGATTT
1 CGTGTAAGACCACGTCTAGGACAGT-GGCATCGTATTTGATTA
* *
81761341 CGTGTAAGACC-CTGTTTGGGACAGTGGCATCGTTATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGACAGTGGCATCG-TATTTGATTA
*
81761384 CATGTAAGACCACGTCT
1 CGTGTAAGACCACGTCT
81761401 GGGATGTTGG
Statistics
Matches: 81, Mismatches: 14, Indels: 15
0.74 0.13 0.14
Matches are distributed among these distances:
42 25 0.31
43 27 0.33
44 28 0.35
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTAGGACAGTGGCATCGTATTTGATTA
Found at i:81761412 original size:43 final size:42
Alignment explanation
Indices: 81761255--81761413 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
81761245 TATGTGTTTT
81761255 CGTGTAAGACCACGTCTAGGACGTTGGCATCG-ACTTATGATTTA
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGTA-TT-TGA-TTA
* * * ** * *
81761299 CGTGTAAGATCATGTCTAGGACATCAGTATCGTATTTGATTT
1 CGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATTA
* *
81761341 CGTGTAAGACC-CTGTTTGGGACAG-TGGCATCGTTATTTGATTA
1 CGTGTAAGACCAC-GTCTAGGAC-GTTGGCATCG-TATTTGATTA
* * *
81761384 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTAGGACGTTGGCAT
81761414 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
42 25 0.28
43 35 0.39
44 29 0.32
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTAGGACGTTGGCATCGTATTTGATTA
Found at i:81765087 original size:31 final size:31
Alignment explanation
Indices: 81765049--81765111 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
81765039 CTTTTCACAC
81765049 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATATTACTGGGCCGAAGCCTT
81765080 TTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTCATATTTCATATTACTGGGCCGAAGCCTT
81765111 T
1 T
81765112 ACTGTAAACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.40
Consensus pattern (31 bp):
TTCATATTTCATATTACTGGGCCGAAGCCTT
Found at i:81765351 original size:23 final size:24
Alignment explanation
Indices: 81765304--81765425 Score: 133
Period size: 25 Copynumber: 5.0 Consensus size: 24
81765294 GCTTTATCAT
*
81765304 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
* *
81765329 ATAACTAGGGCA-AAGTCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
81765352 ATAA-TGGGGGCATAAGCCCTTTATC
1 ATAACT-GGGGCATAAGCCCTTT-TA
*
81765377 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTT-TA
81765402 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
81765426 CACTTCATCC
Statistics
Matches: 85, Mismatches: 7, Indels: 11
0.83 0.07 0.11
Matches are distributed among these distances:
22 1 0.01
23 15 0.18
24 15 0.18
25 53 0.62
26 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:81765418 original size:50 final size:48
Alignment explanation
Indices: 81765295--81765425 Score: 133
Period size: 48 Copynumber: 2.6 Consensus size: 48
81765285 AGCATAGCTG
* *
81765295 CTTTATCATATAACTGGAGGCCT-AGCCTCTTTTAATAACTAGGGCAAAGTC
1 CTTTATC--ATAACTGG-GGCATAAGCC-CTTTTAATAACTAGGGCAAAGCC
* * *
81765346 CTTT-TAATAA-TGGGGGCATAAGCCCTTTATCATAACTGGGGCATAAGCC
1 CTTTATCATAACT-GGGGCATAAGCCCTTT-TAATAACTAGGGCA-AAGCC
81765395 CTTTATCATAACTGGGGCATAAGCCCTTTTA
1 CTTTATCATAACTGGGGCATAAGCCCTTTTA
81765426 CACTTCATCC
Statistics
Matches: 67, Mismatches: 7, Indels: 14
0.76 0.08 0.16
Matches are distributed among these distances:
47 9 0.13
48 22 0.33
49 9 0.13
50 22 0.33
51 5 0.07
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (48 bp):
CTTTATCATAACTGGGGCATAAGCCCTTTTAATAACTAGGGCAAAGCC
Found at i:81765536 original size:20 final size:20
Alignment explanation
Indices: 81765470--81765527 Score: 98
Period size: 20 Copynumber: 2.9 Consensus size: 20
81765460 TTATGAATAC
81765470 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
81765490 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
*
81765510 GTCATGTGCATATCATAC
1 ATCATGTGCATATCATAC
81765528 GTACCATGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:81769043 original size:22 final size:22
Alignment explanation
Indices: 81769013--81769087 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
81769003 GTTTCTTGCC
81769013 TTAGATTTCTCTGTTAAATGCT
1 TTAGATTTCTCTGTTAAATGCT
* * *
81769035 TTAGGTTTCATGCTATTTAA-G-T
1 TTAGATTTC-T-CTGTTAAATGCT
81769057 TTAGATTTCTCTGTTAAATGCT
1 TTAGATTTCTCTGTTAAATGCT
*
81769079 TTAGGTTTC
1 TTAGATTTC
81769088 ATGCTATTTA
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
20 6 0.14
21 2 0.05
22 26 0.62
23 2 0.05
24 6 0.14
ACGTcount: A:0.21, C:0.12, G:0.16, T:0.51
Consensus pattern (22 bp):
TTAGATTTCTCTGTTAAATGCT
Found at i:81769067 original size:44 final size:44
Alignment explanation
Indices: 81769013--81769102 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
81769003 GTTTCTTGCC
81769013 TTAGATTTCTCTGTTAAATGCTTTAGGTTTCATGCTATTTAAGT
1 TTAGATTTCTCTGTTAAATGCTTTAGGTTTCATGCTATTTAAGT
81769057 TTAGATTTCTCTGTTAAATGCTTTAGGTTTCATGCTATTTAAGT
1 TTAGATTTCTCTGTTAAATGCTTTAGGTTTCATGCTATTTAAGT
81769101 TT
1 TT
81769103 TCTTGCATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.22, C:0.11, G:0.16, T:0.51
Consensus pattern (44 bp):
TTAGATTTCTCTGTTAAATGCTTTAGGTTTCATGCTATTTAAGT
Found at i:81782360 original size:39 final size:39
Alignment explanation
Indices: 81782285--81782360 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
81782275 TTCAGTGATG
**
81782285 TATATCCGGACTTAAGGTCCGCAGGCTATGTACTGGAGT
1 TATATCCGGACTTAAGGTCCGCAGGCTACATACTGGAGT
*
81782324 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGA
1 TATATCCGGACTTAAGGTCCGCAGGCTACATACTGGA
81782361 AATATGTCCG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACATACTGGAGT
Found at i:81782371 original size:39 final size:39
Alignment explanation
Indices: 81782285--81782389 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 39
81782275 TTCAGTGATG
** **
81782285 TATATCCGGACTTAAGGTCCGCAGGCTATGTACTGGAGT
1 TATATCCGGACTTAAGGTCCGCAGGCTACATACTGGAAA
*
81782324 TATATCCGGACTTAAGGTCCGCAGGCTACATGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACATACTGGAAA
* * *
81782363 TATGTCCGGGC-TAAAGTCCTGCAGGCT
1 TATATCCGGACTTAAGGTCC-GCAGGCT
81782390 TCGAGCTAGT
Statistics
Matches: 57, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 7 0.12
39 50 0.88
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACATACTGGAAA
Found at i:81792812 original size:6 final size:6
Alignment explanation
Indices: 81792801--81792879 Score: 56
Period size: 6 Copynumber: 13.2 Consensus size: 6
81792791 TTTTGAAGAC
* *
81792801 ATTTTT ATTTTT ATTTTT ATCTTT ATCTTTT -TAATTT ACTTTTT A-TTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT AT-TTTT AT-TTTT A-TTTTT ATTTTT
* * * *
81792850 ATCTTT AATTCT ATTTTT -TCTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT A
81792880 GGTTTTATAA
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
5 9 0.16
6 38 0.69
7 7 0.13
8 1 0.02
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.73
Consensus pattern (6 bp):
ATTTTT
Found at i:81792873 original size:23 final size:23
Alignment explanation
Indices: 81792810--81792879 Score: 81
Period size: 23 Copynumber: 3.0 Consensus size: 23
81792800 CATTTTTATT
81792810 TTTATTTTTATCTTTATCTTTTTAA
1 TTTATTTTTATCTTTATC--TTTAA
81792835 TTTACTTTTTAT-TTTATCTTTAA
1 TTTA-TTTTTATCTTTATCTTTAA
*
81792858 TTCTATTTTT-TCTTTATTTTTA
1 TT-TATTTTTATCTTTATCTTTA
81792880 GGTTTTATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
22 1 0.02
23 21 0.51
24 2 0.05
25 10 0.24
26 7 0.17
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTTTATCTTTATCTTTAA
Found at i:81795691 original size:40 final size:40
Alignment explanation
Indices: 81795593--81795855 Score: 300
Period size: 40 Copynumber: 6.6 Consensus size: 40
81795583 TCCTCGTTCA
* * ** *
81795593 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
81795632 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
81795672 AATGCCTTCGGGACTTAACCCAGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81795712 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
81795752 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
81795792 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
81795832 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81795856 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 37 0.19
40 151 0.77
41 8 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81803636 original size:40 final size:40
Alignment explanation
Indices: 81803538--81803723 Score: 295
Period size: 40 Copynumber: 4.7 Consensus size: 40
81803528 TCCTCGTTCA
* * ** *
81803538 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
81803577 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81803617 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81803657 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81803697 AAT-CCTTCGGGACTTAACCCGGATTTA
1 AATGCCTTCGGGACTTAACCCGGATTTA
81803724 GTATCTCGTA
Statistics
Matches: 139, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
39 58 0.42
40 81 0.58
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81803639 original size:79 final size:80
Alignment explanation
Indices: 81803538--81803726 Score: 301
Period size: 79 Copynumber: 2.4 Consensus size: 80
81803528 TCCTCGTTCA
* *
81803538 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACGAATGCCTTCGGGACATAACCCGGAT
*
81803602 TTAACAATTCGCACG
66 TTAACAACTCGCACG
** * *
81803617 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACGAATGCCTTCGGGACATAACCCGGAT
81803682 TTAACAACTCGCACG
66 TTAACAACTCGCACG
81803697 AAT-CCTTCGGGACTTAACCCGGATTTAGTA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTA
81803727 TCTCGTACAA
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
79 59 0.59
80 41 0.41
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACGAATGCCTTCGGGACATAACCCGGAT
TTAACAACTCGCACG
Found at i:81803753 original size:79 final size:79
Alignment explanation
Indices: 81803538--81803799 Score: 300
Period size: 79 Copynumber: 3.3 Consensus size: 79
81803528 TCCTCGTTCA
* * *
81803538 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTC-ACACAATGCCTTCGGGACATAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGACA-AATGCCTTCGGGACTTAACCCGGAT
*
81803602 TTAACAATTCGCACG
65 TTAACAACTCGCACG
** *
81803617 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG-ACAAATGCCTTCGGGACTTAACCCGGAT
81803682 TTAACAACTCGCACG
65 TTAACAACTCGCACG
* * *
81803697 AAT-CCTTCGGGACTTAACCCGGATTTAGTATCTCGTACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCG-ACAAATGCCTTCGGGA-CTTAACCCGGA
* * *
81803760 TATATTC-ACTTAGCAC-
64 TTTA-ACAAC-TCGCACG
* *
81803776 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81803800 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.02
79 87 0.55
80 66 0.42
81 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGACAAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:81803753 original size:119 final size:119
Alignment explanation
Indices: 81803538--81803799 Score: 300
Period size: 119 Copynumber: 2.2 Consensus size: 119
81803528 TCCTCGTTCA
* **
81803538 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGATT
* * * *
81803603 TAACAATTCGCACGAATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAATTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATAC-ACTTAGCAC
* * *
81803656 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAAT-CCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** * * *
81803720 TTT-AGTATCTCGTACAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAAT-TCGCACAAAGGCCTTCGGGA-CTTAACCCGGATATATACACTTAGCAC
*
81803776 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
81803800 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 6 0.05
119 106 0.88
120 9 0.07
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAATTCGCACAAAGGCCTTCGGGACTTAACCCGGATATATACACTTAGCAC
Found at i:81803799 original size:40 final size:39
Alignment explanation
Indices: 81803536--81803799 Score: 198
Period size: 40 Copynumber: 6.6 Consensus size: 39
81803526 GCTCCTCGTT
* * *
81803536 CAAATGCCTTCGGGACATAGCCCGGATTTAGTA-ACTCA-CA
1 CAAA-GCCTTCGGGACTTAACCCGGATTTA--ACACTTAGCA
* * * *
81803576 CAATGCCTTCGGGACATAACCCGGATTTAACAATTCGCA
1 CAAAGCCTTCGGGACTTAACCCGGATTTAACACTTAGCA
* *
81803615 CGAATGCCTTCGGGACTTAACCCGGATTTAACAAC-TCGCA
1 C-AAAGCCTTCGGGACTTAACCCGGATTTAAC-ACTTAGCA
* *
81803655 CGAATGCCTTCGGGACTTAACCCGGATTTAACAAC-TCGCA
1 C-AAAGCCTTCGGGACTTAACCCGGATTTAAC-ACTTAGCA
* * ** * *
81803695 CGAATCCTTCGGGACTTAACCCGGATTTAGTA-TCTCGTA
1 CAAAGCCTTCGGGACTTAACCCGGATTTAACACT-TAGCA
* * *
81803734 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAA-GCCTTCGGGA-CTTAACCCGGATTTA-ACACTTAGCA
*
81803775 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAACCCGGA
81803800 CAGCATTCAA
Statistics
Matches: 190, Mismatches: 23, Indels: 22
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.01
38 3 0.02
39 62 0.33
40 111 0.58
41 12 0.06
42 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (39 bp):
CAAAGCCTTCGGGACTTAACCCGGATTTAACACTTAGCA
Found at i:81819178 original size:40 final size:40
Alignment explanation
Indices: 81819080--81819342 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
81819070 TCCTCGTTCA
* * ** *
81819080 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
81819119 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81819159 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81819199 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
81819239 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
81819279 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
81819319 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81819343 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 21, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81827121 original size:40 final size:40
Alignment explanation
Indices: 81827023--81827209 Score: 304
Period size: 40 Copynumber: 4.7 Consensus size: 40
81827013 TCCTCGTTCA
* * ** *
81827023 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
81827062 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81827102 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81827142 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
81827182 AATGCCTTCGGGACTTAACCCGGATTTA
1 AATGCCTTCGGGACTTAACCCGGATTTA
81827210 GTATCTCGAC
Statistics
Matches: 140, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
39 34 0.24
40 106 0.76
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:81827171 original size:80 final size:79
Alignment explanation
Indices: 81827023--81827284 Score: 323
Period size: 79 Copynumber: 3.3 Consensus size: 79
81827013 TCCTCGTTCA
* * * *
81827023 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
81827088 TAACAATTCGCACG
66 TAACAATTCGCACG
**
81827102 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
81827167 TTAACAACTCGCACG
65 TTAACAATTCGCACG
* * *
81827182 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCG-ACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * * *
81827245 TATATTCACTTAGCAC-
64 TTTA-ACAATTCGCACG
* *
81827261 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81827285 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
78 3 0.02
79 79 0.49
80 78 0.49
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAATTCGCACG
Found at i:81827228 original size:119 final size:119
Alignment explanation
Indices: 81827023--81827284 Score: 309
Period size: 119 Copynumber: 2.2 Consensus size: 119
81827013 TCCTCGTTCA
* **
81827023 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGATT
* * * *
81827088 TAACAATTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCAC
66 TAACAATTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATATAC-ACTTAGCAC
* * *
81827141 GAATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACAC-AATGCCTTCGGGACATAACCCGGA
** * *
81827206 TTT-AGTATCTCG-ACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAAT-TCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTTAGCAC
*
81827261 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
81827285 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.02
119 84 0.69
120 35 0.29
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAACAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAATTCGCACAAAGGCCTTCGGATCTTAACCCGGATATATACACTTAGCAC
Found at i:81827284 original size:40 final size:39
Alignment explanation
Indices: 81827023--81827284 Score: 250
Period size: 40 Copynumber: 6.6 Consensus size: 39
81827013 TCCTCGTTCA
* * *
81827023 AATGCCTTCGGGACATAGCCCGGATTTAGTA-AC-TCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTA--ACACTTCGCAC
* *
81827062 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAACACTTCGCAC
81827101 GAATGCCTTCGGGACTTAACCCGGATTTAACAAC-TCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAAC-ACTTCGCAC
81827141 GAATGCCTTCGGGACTTAACCCGGATTTAACAAC-TCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAAC-ACTTCGCAC
**
81827181 GAATGCCTTCGGGACTTAACCCGGATTTAGTA-TCTCG-AC
1 -AATGCCTTCGGGACTTAACCCGGATTTAACACT-TCGCAC
* * * * *
81827220 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTA-ACACTTCGCAC
* *
81827261 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81827285 CAGCATTCAA
Statistics
Matches: 195, Mismatches: 17, Indels: 21
0.84 0.07 0.09
Matches are distributed among these distances:
37 1 0.01
38 4 0.02
39 56 0.29
40 127 0.65
41 7 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACACTTCGCAC
Found at i:81832028 original size:26 final size:26
Alignment explanation
Indices: 81831982--81832034 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81831972 TCAAACATGC
*
81831982 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
81832008 ATTTTGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
81832034 A
1 A
81832035 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Done.