Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 255 of 295
Found at i:81840528 original size:46 final size:45
Alignment explanation
Indices: 81840475--81840650 Score: 185
Period size: 46 Copynumber: 3.8 Consensus size: 45
81840465 TATTTGGGCA
*
81840475 TCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81840521 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
81840568 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
81840614 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81840651 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 17, Indels: 14
0.77 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.61
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81840589 original size:93 final size:93
Alignment explanation
Indices: 81840471--81840642 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
81840461 AGGATATTTG
* *
81840471 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81840536 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
81840564 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
81840629 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
81840643 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.21, G:0.31, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:81842171 original size:45 final size:41
Alignment explanation
Indices: 81842095--81842198 Score: 111
Period size: 45 Copynumber: 2.4 Consensus size: 41
81842085 ATATGTGTTC
* ** *
81842095 TCGTGTAAGACCATGTCTAGGACGTTGGCATCGATATATGTGGT
1 TCGTGTAAGACCATGTCTAGGACATCAGCATCG-TAT-T-TGAT
81842139 TACGTGTAAGACCATGTCTATGG-CATCAGCATCGTATTTGAT
1 T-CGTGTAAGACCATGTCTA-GGACATCAGCATCGTATTTGAT
*
81842181 TCGTGTAAGACCCTGTCT
1 TCGTGTAAGACCATGTCT
81842199 GGGATAGTGG
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
41 16 0.30
42 4 0.08
43 1 0.02
44 4 0.08
45 26 0.49
46 2 0.04
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTAGGACATCAGCATCGTATTTGAT
Found at i:81849906 original size:18 final size:18
Alignment explanation
Indices: 81849883--81849946 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
81849873 TTTGATCAAA
81849883 CTCTTTTTCTTTCTCATT
1 CTCTTTTTCTTTCTCATT
**
81849901 CTCTTTTTCAATCTCATT
1 CTCTTTTTCTTTCTCATT
* *
81849919 -T-TGTTTC-CTCTC-TT
1 CTCTTTTTCTTTCTCATT
81849933 CCTCTTTTTCTTTC
1 -CTCTTTTTCTTTC
81849947 ATTTCTTTGT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
14 2 0.06
15 4 0.11
16 6 0.17
17 6 0.17
18 18 0.50
ACGTcount: A:0.06, C:0.30, G:0.02, T:0.62
Consensus pattern (18 bp):
CTCTTTTTCTTTCTCATT
Found at i:81850925 original size:16 final size:17
Alignment explanation
Indices: 81850885--81850926 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
81850875 AAATCAACAC
*
81850885 TTCGTACTTTTTTATAT
1 TTCGTATTTTTTTATAT
*
81850902 TT-GAATTTTTTTA-AT
1 TTCGTATTTTTTTATAT
81850917 TTCGTATTTT
1 TTCGTATTTT
81850927 CTTTTCACTA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
15 4 0.19
16 15 0.71
17 2 0.10
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (17 bp):
TTCGTATTTTTTTATAT
Found at i:81856072 original size:29 final size:29
Alignment explanation
Indices: 81856038--81856111 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
81856028 GTTGTGAGAT
* *
81856038 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81856067 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81856096 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81856112 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81859290 original size:29 final size:29
Alignment explanation
Indices: 81859248--81859306 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
81859238 TAGCATCCAG
*
81859248 TAAGACTCTACCTGTCGAGTCTATTGAGT
1 TAAGACTCTACCTGTCGAGTCTACTGAGT
81859277 TAAGACTCTACCTGTCGAGTCTACTGAGT
1 TAAGACTCTACCTGTCGAGTCTACTGAGT
81859306 T
1 T
81859307 CATAATTCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (29 bp):
TAAGACTCTACCTGTCGAGTCTACTGAGT
Found at i:81864449 original size:28 final size:29
Alignment explanation
Indices: 81864415--81864487 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 29
81864405 GTTGTGAGAT
*
81864415 TGGCACTAAGTGTGCG-GCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
81864443 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
81864472 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
81864488 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 21 0.51
29 20 0.49
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:81866939 original size:27 final size:27
Alignment explanation
Indices: 81866899--81866971 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
81866889 TATTCATCAT
* *
81866899 TTTACCATACAGGGGTATTACGGTCAC
1 TTTACCCTATAGGGGTATTACGGTCAC
**
81866926 TTTACCCTATAGGGGCT-TTACGGTCTT
1 TTTACCCTATAGGGG-TATTACGGTCAC
81866953 TTTA-CCTATTAGGGGTATT
1 TTTACCCTA-TAGGGGTATT
81866972 TCTGTAATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
26 5 0.13
27 33 0.85
28 1 0.03
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (27 bp):
TTTACCCTATAGGGGTATTACGGTCAC
Found at i:81866993 original size:27 final size:26
Alignment explanation
Indices: 81866962--81867088 Score: 89
Period size: 27 Copynumber: 4.7 Consensus size: 26
81866952 TTTTACCTAT
**
81866962 TAGGGGTATTTCTGTAATTTTGTAAA
1 TAGGGGTATTTCTGTAATTTTACAAA
*
81866988 TCAGGGATATTT-TGGTAATTTTACAAA
1 T-AGGGGTATTTCT-GTAATTTTACAAA
* * *
81867015 TTGAGGGTATTTCGGTAATTTCACAAA
1 TAG-GGGTATTTCTGTAATTTTACAAA
* *
81867042 CCAGTGGTATTT-TGGTAATTTTACAAAA
1 -TAGGGGTATTTCT-GTAATTTTAC-AAA
*
81867070 TAAGGGTATTT-TGGTAATT
1 TAGGGGTATTTCT-GTAATT
81867089 CTACCCTATA
Statistics
Matches: 79, Mismatches: 15, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
26 3 0.04
27 72 0.91
28 4 0.05
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (26 bp):
TAGGGGTATTTCTGTAATTTTACAAA
Found at i:81867099 original size:27 final size:27
Alignment explanation
Indices: 81866985--81867107 Score: 106
Period size: 27 Copynumber: 4.5 Consensus size: 27
81866975 GTAATTTTGT
* *
81866985 AAATCAGGGATATTTTGGTAATTTTACA
1 AAATAAGGG-TATTTTGGTAATTCTACA
* * *
81867013 AATTGAGGGTATTTCGGTAATT-T-CA
1 AAATAAGGGTATTTTGGTAATTCTACA
** *
81867038 CAAACCAGTGGTATTTTGGTAATTTTACA
1 -AAATAAG-GGTATTTTGGTAATTCTACA
*
81867067 AAATAAGGGTATTTTGGTAATTCTACC
1 AAATAAGGGTATTTTGGTAATTCTACA
**
81867094 CTATAAGGGTATTT
1 AAATAAGGGTATTT
81867108 CAATAATTTC
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
25 2 0.03
26 5 0.06
27 56 0.72
28 13 0.17
29 2 0.03
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
AAATAAGGGTATTTTGGTAATTCTACA
Found at i:81867107 original size:54 final size:52
Alignment explanation
Indices: 81866965--81867088 Score: 149
Period size: 54 Copynumber: 2.3 Consensus size: 52
81866955 TACCTATTAG
* *** * *
81866965 GGGTATTTCTGTAATTTTGTAAATCAGGGATATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTCACAAA-CAGGG-TATTTTGGTAATTTTACAAAATAA
81867019 GGGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAAATAA
1 GGGTATTTCGGTAATTTCACAAA-CAG-GGTATTTTGGTAATTTTACAAAATAA
*
81867073 GGGTATTTTGGTAATT
1 GGGTATTTCGGTAATT
81867089 CTACCCTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (52 bp):
GGGTATTTCGGTAATTTCACAAACAGGGTATTTTGGTAATTTTACAAAATAA
Found at i:81867156 original size:27 final size:27
Alignment explanation
Indices: 81867120--81867211 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
81867110 ATAATTTCAC
* *
81867120 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
81867147 AATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTGTA
* * * * *
81867174 CATCAAGGGTAAAATAGTGATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTGTA
81867201 AATCGAGGGTA
1 AATCGAGGGTA
81867212 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTGTA
Found at i:81871969 original size:29 final size:29
Alignment explanation
Indices: 81871906--81871973 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
81871896 TAATCAACCG
*
81871906 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
81871935 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
81871964 CGCACACTTA
1 CGCACACTTA
81871974 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:81872085 original size:174 final size:174
Alignment explanation
Indices: 81871795--81872296 Score: 932
Period size: 174 Copynumber: 2.9 Consensus size: 174
81871785 AACTCAAGGT
* *
81871795 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
81871860 GAAAATATATATTGAGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
*
81871925 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGAATTTCAAGTTCGCAC
81871969 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
81872034 GAAAATATATATTGGGTTCGCACACATAGTGCTCAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
81872099 ACTTTAAACTCACACACTTAGTGCCATGAATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGAATTTCAAGTTCGCAC
81872143 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
81872208 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
* *
81872273 ACTTCAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
81872297 TGTACAATTT
Statistics
Matches: 318, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 318 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGAATTTCAAGTTCGCAC
Found at i:81872143 original size:29 final size:29
Alignment explanation
Indices: 81872080--81872147 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
81872070 TAATCAACCG
*
81872080 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCAATTTAAACT
* **
81872109 CACACACTTAGTGCCATG-AATTTCAAGTT
1 CGCACACTTAGTGCCATGCAATTT-AAACT
81872138 CGCACACTTA
1 CGCACACTTA
81872148 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 4 0.12
29 29 0.88
ACGTcount: A:0.29, C:0.29, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCAATTTAAACT
Found at i:81872288 original size:29 final size:30
Alignment explanation
Indices: 81872249--81872327 Score: 101
Period size: 29 Copynumber: 2.7 Consensus size: 30
81872239 CTTAATAATC
81872249 AACCGCGCACACTTAGTGCCATGTAC-TTCA
1 AACC-CGCACACTTAGTGCCATGTACATTCA
* *
81872279 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTCA
81872308 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
81872328 ATCTCATGAC
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 32 0.76
30 4 0.10
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTCA
Found at i:81896512 original size:45 final size:45
Alignment explanation
Indices: 81896457--81896717 Score: 418
Period size: 45 Copynumber: 5.8 Consensus size: 45
81896447 TTGGCTTGAA
* * * *
81896457 AAATTAATAAGACCATTGTTGAAAGAGACTATGGGACTATACCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
* *
81896502 ATATGAATAAGACCATAGTTGAAAGACACTATGGCACTATATCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
81896547 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
* *
81896592 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATACCGA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
81896637 AAATGAATAAGACCATAGTTGAAAGACACTATGGCAAC-ATGA-CGG
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGC-ACTAT-ACCGG
81896682 AAATGAATAAGACCATAGTTGAAAGACACTATGGCA
1 AAATGAATAAGACCATAGTTGAAAGACACTATGGCA
81896718 TCATGTTAGA
Statistics
Matches: 202, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
44 1 0.00
45 198 0.98
46 3 0.01
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.21
Consensus pattern (45 bp):
AAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCGG
Found at i:81896752 original size:45 final size:45
Alignment explanation
Indices: 81896507--81896771 Score: 182
Period size: 45 Copynumber: 5.9 Consensus size: 45
81896497 ACCGGATATG
* * * *
81896507 AATAAGACCATAGTTGAAAGACACTATGGCA-CTAT-ATCGGAAATG
1 AATAAGACCATAGCTAAAAGACACTATGGCATC-ATGA-CAGAAATA
* * * *
81896552 AATAAGACCATAGTTGAAAGACACTATGGCA-CTAT-ACCGGAAATG
1 AATAAGACCATAGCTAAAAGACACTATGGCATC-ATGA-CAGAAATA
* * * * *
81896597 AATAAGACCATAGTTGAAAGACACTATGACA-CTAT-ACCGAAAATG
1 AATAAGACCATAGCTAAAAGACACTATGGCATC-ATGACAG-AAATA
* * * * *
81896642 AATAAGACCATAGTTGAAAGACACTATGGCAACATGACGGAAATG
1 AATAAGACCATAGCTAAAAGACACTATGGCATCATGACAGAAATA
* * ** *
81896687 AATAAGACCATAGTTGAAAGACACTATGGCATCATGTTAGAGATA
1 AATAAGACCATAGCTAAAAGACACTATGGCATCATGACAGAAATA
* * **
81896732 AATAAGACCCTGGCTAAAAGACGTTATGGCATCATTGACA
1 AATAAGACCATAGCTAAAAGACACTATGGCATCA-TGACA
81896772 ATTGTTTATC
Statistics
Matches: 197, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
44 2 0.01
45 188 0.95
46 7 0.04
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.21
Consensus pattern (45 bp):
AATAAGACCATAGCTAAAAGACACTATGGCATCATGACAGAAATA
Found at i:81896752 original size:135 final size:135
Alignment explanation
Indices: 81896457--81896753 Score: 375
Period size: 135 Copynumber: 2.2 Consensus size: 135
81896447 TTGGCTTGAA
* * * * * ** * *
81896457 AAATTAATAAGACCATTGTTGAAAGAGACTATGGGACTATACCGGATATGAATAAGACCATAGTT
1 AAATAAATAAGACCATAGCTAAAAGACACTATGACACTATACCGAAAATGAATAAGACCATAGTT
81896522 GAAAGACACTATGGCACTATATCGGAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTAT
66 GAAAGACACTATGGCACTATATCGGAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTAT
*
81896587 ACCGG
131 ACCAG
* * *
81896592 AAATGAATAAGACCATAGTTGAAAGACACTATGACACTATACCGAAAATGAATAAGACCATAGTT
1 AAATAAATAAGACCATAGCTAAAAGACACTATGACACTATACCGAAAATGAATAAGACCATAGTT
81896657 GAAAGACACTATGGCAAC-ATGA-CGGAAATGAATAAGACCATAGTTGAAAGACACTATGGCA-T
66 GAAAGACACTATGGC-ACTAT-ATCGGAAATGAATAAGACCATAGTTGAAAGACACTATGGCACT
***
81896719 CATGTTAG
129 -ATACCAG
* * *
81896727 AGATAAATAAGACCCTGGCTAAAAGAC
1 AAATAAATAAGACCATAGCTAAAAGAC
81896754 GTTATGGCAT
Statistics
Matches: 142, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
134 1 0.01
135 138 0.97
136 3 0.02
ACGTcount: A:0.43, C:0.16, G:0.20, T:0.21
Consensus pattern (135 bp):
AAATAAATAAGACCATAGCTAAAAGACACTATGACACTATACCGAAAATGAATAAGACCATAGTT
GAAAGACACTATGGCACTATATCGGAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTAT
ACCAG
Found at i:81898043 original size:19 final size:19
Alignment explanation
Indices: 81898019--81898055 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
81898009 CAATCGTCAC
*
81898019 TTATTCGTTAATTATTCAT
1 TTATTCATTAATTATTCAT
81898038 TTATTCATTAATTATTCA
1 TTATTCATTAATTATTCA
81898056 CACATTCGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.57
Consensus pattern (19 bp):
TTATTCATTAATTATTCAT
Found at i:81898881 original size:21 final size:18
Alignment explanation
Indices: 81898829--81898881 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
81898819 AATTAAACAA
81898829 AAAAC-CAATAAAAAACTC
1 AAAACACAAT-AAAAACTC
81898847 AAAACACAATAAAAACATC
1 AAAACACAATAAAAAC-TC
*
81898866 TAAAAGCACTATAAAA
1 -AAAA-CACAATAAAA
81898882 CAAGCTCGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.37
19 6 0.20
20 4 0.13
21 9 0.30
ACGTcount: A:0.66, C:0.19, G:0.02, T:0.13
Consensus pattern (18 bp):
AAAACACAATAAAAACTC
Found at i:81904882 original size:41 final size:40
Alignment explanation
Indices: 81904834--81905020 Score: 131
Period size: 42 Copynumber: 4.5 Consensus size: 40
81904824 AGGCTATTTT
* *
81904834 AAATCGCACATTAAGTGCCATAGATAGTCGAAGCTATCTC
1 AAATCGCACAATAAGTGCCATAGATAGCCGAAGCTATCTC
** * * *
81904874 GATCTCGCACAATAAGTGTCATATATAGCCGAAGCTATGTC
1 -AAATCGCACAATAAGTGCCATAGATAGCCGAAGCTATCTC
* * * * * *
81904915 AAATCGCACACTAAGTGCCATATATATATAGTCAAAACTATGTC
1 AAATCGCACAATAAGTGCC----ATAGATAGCCGAAGCTATCTC
* * * * * *
81904959 GAATCACACACTAAGTGCCATATATATAGTCGAAGCTATGTC
1 AAATCGCACAATAAGTGCC--ATAGATAGCCGAAGCTATCTC
*
81905001 AAATCGCACACTAAGTGCCA
1 AAATCGCACAATAAGTGCCA
81905021 CATATAGCTG
Statistics
Matches: 122, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
40 16 0.13
41 33 0.27
42 38 0.31
44 35 0.29
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (40 bp):
AAATCGCACAATAAGTGCCATAGATAGCCGAAGCTATCTC
Found at i:81904957 original size:44 final size:43
Alignment explanation
Indices: 81904834--81905026 Score: 202
Period size: 44 Copynumber: 4.6 Consensus size: 43
81904824 AGGCTATTTT
* * *
81904834 AAATCGCACATTAAGTGCC---ATAGATAGTCGAAGCTATCTC
1 AAATCGCACACTAAGTGCCAATATATATAGTCGAAGCTATGTC
** * * *
81904874 GATCTCGCACAATAAGTGTC---ATATATAGCCGAAGCTATGTC
1 -AAATCGCACACTAAGTGCCAATATATATAGTCGAAGCTATGTC
* *
81904915 AAATCGCACACTAAGTGCCATATATATATAGTCAAAACTATGTC
1 AAATCGCACACTAAGTGCCA-ATATATATAGTCGAAGCTATGTC
* *
81904959 GAATCACACACTAAGTGCC-ATATATATAGTCGAAGCTATGTC
1 AAATCGCACACTAAGTGCCAATATATATAGTCGAAGCTATGTC
81905001 AAATCGCACACTAAGTGCCACATATA
1 AAATCGCACACTAAGTGCCA-ATATA
81905027 GCTGATTTGT
Statistics
Matches: 126, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
40 15 0.12
41 33 0.26
42 38 0.30
44 40 0.32
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.25
Consensus pattern (43 bp):
AAATCGCACACTAAGTGCCAATATATATAGTCGAAGCTATGTC
Found at i:81909045 original size:15 final size:15
Alignment explanation
Indices: 81909025--81909056 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
81909015 TTTAGAAGTG
81909025 AATTGAATTTTGGAT
1 AATTGAATTTTGGAT
81909040 AATTGAATTTTGGAT
1 AATTGAATTTTGGAT
81909055 AA
1 AA
81909057 ATAAATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (15 bp):
AATTGAATTTTGGAT
Found at i:81909063 original size:15 final size:15
Alignment explanation
Indices: 81909030--81909064 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
81909020 AAGTGAATTG
* *
81909030 AATTTTGGATAATTG
1 AATTTTGGATAAATA
81909045 AATTTTGGATAAATA
1 AATTTTGGATAAATA
81909060 AATTT
1 AATTT
81909065 ATTGAATTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.14, T:0.46
Consensus pattern (15 bp):
AATTTTGGATAAATA
Found at i:81909350 original size:172 final size:172
Alignment explanation
Indices: 81909041--81909350 Score: 514
Period size: 172 Copynumber: 1.8 Consensus size: 172
81909031 ATTTTGGATA
* *
81909041 ATTGAATTTTGGATAAATAAATTTATTGAATTAGTAATTAATTAAAGTACAAGGAATAAATTGTA
1 ATTGAATTTTCGATAAATAAATTTATTGAATTAGTAACTAATTAAAGTACAAGGAATAAATTGTA
* *
81909106 AAACTAGTAAAAATATAATTGCTAGAGTAATCTTTAATTAAAACATGGACAAGGAACTTAAGTGA
66 AAACTAGTAAAAATATAATTGCTAGAGTAATCTCTAATTAAAACATGGACAAGGAACTTAAGCGA
81909171 AAATTAAATAAATAAATAGTTTAGTGATGATTAATTAAATTT
131 AAATTAAATAAATAAATAGTTTAGTGATGATTAATTAAATTT
* *
81909213 ATTGAATTTTCGATAAGA-AAATTTATTGAATTAGTAACTAATTAAGGTACAAGGACTAAATTGT
1 ATTGAATTTTCGATAA-ATAAATTTATTGAATTAGTAACTAATTAAAGTACAAGGAATAAATTGT
* *
81909277 AAAACTAGTAAAAATATAATTGCTAGAGTAATCTCTAGTTAAAACATGGACAAGGGACTTAAGCG
65 AAAACTAGTAAAAATATAATTGCTAGAGTAATCTCTAATTAAAACATGGACAAGGAACTTAAGCG
**
81909342 GTAATTAAA
130 AAAATTAAA
81909351 CCACTATGTT
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
172 126 0.99
173 1 0.01
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (172 bp):
ATTGAATTTTCGATAAATAAATTTATTGAATTAGTAACTAATTAAAGTACAAGGAATAAATTGTA
AAACTAGTAAAAATATAATTGCTAGAGTAATCTCTAATTAAAACATGGACAAGGAACTTAAGCGA
AAATTAAATAAATAAATAGTTTAGTGATGATTAATTAAATTT
Found at i:81910891 original size:21 final size:21
Alignment explanation
Indices: 81910864--81910913 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
81910854 TTATATGCTT
81910864 AGCATGATTTGAAATATGATA
1 AGCATGATTTGAAATATGATA
* ** *
81910885 AGTATGATTTGTTATTTGATA
1 AGCATGATTTGAAATATGATA
81910906 AGCATGAT
1 AGCATGAT
81910914 CTGTATTTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (21 bp):
AGCATGATTTGAAATATGATA
Found at i:81920386 original size:46 final size:46
Alignment explanation
Indices: 81920319--81920490 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
81920309 AACCCGCCCC
* *
81920319 TAAGTGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
81920365 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACATCCA
* * ** * *
81920413 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
*
81920458 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
81920491 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 1 0.01
46 57 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACATCCA
Found at i:81920432 original size:93 final size:93
Alignment explanation
Indices: 81920324--81920494 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
81920314 GCCCCTAAGT
** *
81920324 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
81920389 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
81920417 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
81920482 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81920495 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCGAACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81920948 original size:30 final size:30
Alignment explanation
Indices: 81920914--81920973 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81920904 ATTTAATATG
81920914 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
81920944 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
81920974 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:81927974 original size:46 final size:46
Alignment explanation
Indices: 81927907--81928078 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
81927897 AACCCGCCCC
* *
81927907 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCCTCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
81927953 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * * * *
81928001 TCA-CGAACTCGGACTCAACTAAACGAGTTCGGACATTCGCAGCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
81928046 TAGGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
81928079 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 2 0.02
45 1 0.01
46 59 0.57
47 27 0.26
48 3 0.03
49 2 0.02
50 2 0.02
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:81928026 original size:93 final size:93
Alignment explanation
Indices: 81927912--81928082 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
81927902 GCCCCTAAGT
* * * **
81927912 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCCTCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGGACATTCGCAGCCATAAGTGAACTCGGACTCAACTCAA
81927977 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
81928005 GAACTCGGACTCAACTAAACGAGTTCGGACATTCGCAGCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTAAACGAGCTCGGACATTCGCAGCCATAAGTGAACTCGGACTCAACTCAA
81928070 CGAGTTCGGATGC
66 CGAGTTCGGATGC
81928083 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTAAACGAGCTCGGACATTCGCAGCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:81928536 original size:30 final size:30
Alignment explanation
Indices: 81928502--81928561 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
81928492 ATTTAATATG
81928502 AACTTTCGAAAAATTACACTTTTGCCCCTA
1 AACTTTCGAAAAATTACACTTTTGCCCCTA
* * *
81928532 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTCGAAAAATTACACTTTTGCCCCTA
81928562 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTCGAAAAATTACACTTTTGCCCCTA
Found at i:81933276 original size:82 final size:81
Alignment explanation
Indices: 81933160--81933310 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
81933150 AAATTGTACA
* * * *
81933160 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
81933224 TGCGAAATGACCATGCG
65 TGCGAAATGACCATGCG
** *
81933241 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
81933306 TGCGA
65 TGCGA
81933311 GTTGATTGTA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 18 0.30
82 43 0.70
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGACCATGCG
Found at i:81933317 original size:27 final size:27
Alignment explanation
Indices: 81933160--81933315 Score: 154
Period size: 27 Copynumber: 5.7 Consensus size: 27
81933150 AAATTGTACA
*
81933160 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
81933187 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* * *
81933214 GCACTAAGTGTGCGAAATGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
81933241 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
81933269 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
81933296 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
81933316 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:81933326 original size:27 final size:27
Alignment explanation
Indices: 81933159--81933336 Score: 144
Period size: 27 Copynumber: 6.6 Consensus size: 27
81933149 TAAATTGTAC
*
81933159 AGCACTAAGTGTGCGA-TTCGACTATGT
1 AGCACTAAGTGTGCGAGTT-GATTATGT
* ** *
81933186 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
** ** *
81933212 ATGCACTAAGTGTGCGAAATGACCATGC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
81933240 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
81933268 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
81933295 GGCACTAAGTGTGCGAGTTGATTGTAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
81933322 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
81933337 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:81933327 original size:82 final size:81
Alignment explanation
Indices: 81933152--81933336 Score: 201
Period size: 82 Copynumber: 2.3 Consensus size: 81
81933142 GCGGGATTAA
* * * *
81933152 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
81933217 CTAAGTGTGCGAAATG
66 CTAAGTGTGCGAAATG
*** * * ** *
81933233 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
**
81933297 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAAATG
* *
81933315 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
81933337 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 21, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
81 21 0.26
82 60 0.74
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAAATG
Found at i:81937245 original size:40 final size:40
Alignment explanation
Indices: 81937168--81937385 Score: 325
Period size: 40 Copynumber: 5.5 Consensus size: 40
81937158 AAACCAAGTA
* *
81937168 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
81937207 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
81937247 CCTTCGGGACCTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
81937287 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
81937327 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
81937367 CCTTTGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
81937386 TTATCATCCG
Statistics
Matches: 165, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 15 0.09
40 150 0.91
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:81946514 original size:41 final size:41
Alignment explanation
Indices: 81946469--81946551 Score: 103
Period size: 41 Copynumber: 2.0 Consensus size: 41
81946459 CTACTAGGCT
* *
81946469 CAAAGCCTAATATAACACACCGGCACGAAGCTTGCTAAGCA
1 CAAAGCCTAATATAACACACCGGCACAAAGCGTGCTAAGCA
* * * * *
81946510 CAAAGCTTGATATAATACACTGGCACAAAGCGTGCTAGGCA
1 CAAAGCCTAATATAACACACCGGCACAAAGCGTGCTAAGCA
81946551 C
1 C
81946552 GGAGCCCGAA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (41 bp):
CAAAGCCTAATATAACACACCGGCACAAAGCGTGCTAAGCA
Found at i:81947343 original size:10 final size:10
Alignment explanation
Indices: 81947328--81947352 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81947318 TTTTTCATTC
81947328 TTTAATTTTG
1 TTTAATTTTG
81947338 TTTAATTTTG
1 TTTAATTTTG
81947348 TTTAA
1 TTTAA
81947353 ACTTTCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (10 bp):
TTTAATTTTG
Found at i:81954175 original size:9 final size:10
Alignment explanation
Indices: 81954149--81954173 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
81954139 TGTCGACGCT
81954149 AAAAAAGCCA
1 AAAAAAGCCA
81954159 AAAAAAGCCA
1 AAAAAAGCCA
81954169 AAAAA
1 AAAAA
81954174 GCTTTCTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.16, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGCCA
Found at i:81975147 original size:26 final size:26
Alignment explanation
Indices: 81975118--81975170 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
81975108 TCAAACATGC
81975118 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
81975144 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
81975170 A
1 A
81975171 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:81987135 original size:58 final size:57
Alignment explanation
Indices: 81987047--81987166 Score: 136
Period size: 58 Copynumber: 2.1 Consensus size: 57
81987037 ATAGAAATGG
* * *
81987047 TGAAATGGAGAAATAGGAAACATTCAGGAAATGATTATGGTTTTCTCCAAAATGAAAA
1 TGAAATGGAGAAATAGGAAACATTCAGGAAATAAATATGATTTTCT-CAAAATGAAAA
* * * *
81987105 TGAAATTGGAGAAA-ATGGAATCATT-TGGAAATAAATGTGATTTTCTCAAAATGGAAA
1 TGAAA-TGGAGAAATA-GGAAACATTCAGGAAATAAATATGATTTTCTCAAAATGAAAA
81987162 TGAAA
1 TGAAA
81987167 ATGAAAATGT
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
57 15 0.28
58 22 0.42
59 16 0.30
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.28
Consensus pattern (57 bp):
TGAAATGGAGAAATAGGAAACATTCAGGAAATAAATATGATTTTCTCAAAATGAAAA
Found at i:81987169 original size:12 final size:13
Alignment explanation
Indices: 81987152--81987184 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
81987142 TGATTTTCTC
*
81987152 AAAATGGAAATG-
1 AAAATGAAAATGT
81987164 AAAATGAAAATGT
1 AAAATGAAAATGT
81987177 AAAATGAA
1 AAAATGAA
81987185 TTCATTTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.64, C:0.00, G:0.18, T:0.18
Consensus pattern (13 bp):
AAAATGAAAATGT
Found at i:81994590 original size:15 final size:15
Alignment explanation
Indices: 81994570--81994600 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
81994560 TCTGGGACAA
81994570 AGAAATCCAAGATAC
1 AGAAATCCAAGATAC
81994585 AGAAATCCAAGATAC
1 AGAAATCCAAGATAC
81994600 A
1 A
81994601 ATATCATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.19, G:0.13, T:0.13
Consensus pattern (15 bp):
AGAAATCCAAGATAC
Found at i:82003168 original size:15 final size:15
Alignment explanation
Indices: 82003148--82003216 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
82003138 GTATCTTGGG
82003148 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
82003163 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
82003178 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
82003193 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
82003208 TTTCTTTAT
1 TTTCTTTAT
82003217 TCAGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:82003217 original size:30 final size:30
Alignment explanation
Indices: 82003139--82003218 Score: 99
Period size: 30 Copynumber: 2.7 Consensus size: 30
82003129 CATAGTATCG
* * *
82003139 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATCTCTC
* *
82003169 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATCTCTC
82003199 TATCTTGGATTTCTTTATTC
1 TATCTTGGATTTCTTTATTC
82003219 AGTTTTCTTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
29 1 0.02
30 41 0.95
31 1 0.02
ACGTcount: A:0.11, C:0.17, G:0.15, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATCTCTC
Found at i:82005668 original size:46 final size:46
Alignment explanation
Indices: 82005618--82005791 Score: 188
Period size: 46 Copynumber: 3.8 Consensus size: 46
82005608 TGTTTGGGCA
*
82005618 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
82005664 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAAAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* * *
82005711 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
82005757 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
82005792 ATGCGGGTTA
Statistics
Matches: 104, Mismatches: 21, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
46 70 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:82005773 original size:93 final size:93
Alignment explanation
Indices: 82005614--82005785 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
82005604 AGGATGTTTG
* *
82005614 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
82005679 TTGAGTCCGAGTTCGAAAGATGTAACTA
66 TTGAGTCCGAGTTCGAAAGATGTAACTA
* * * *
82005707 GGCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
82005772 TTGAGTCTGAGTTC
66 TTGAGTCCGAGTTC
82005786 ACTTATATGC
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAAAGATGTAACTA
Found at i:82009457 original size:47 final size:47
Alignment explanation
Indices: 82009381--82009682 Score: 419
Period size: 47 Copynumber: 6.4 Consensus size: 47
82009371 CTTCGGGACT
* * * * * *
82009381 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
82009428 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
82009474 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
82009522 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
82009569 TATCACATATATATACACTTTCACATTCATCACATTGGCCATT-CGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
82009617 TATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
82009664 TTATCACATATATACACTT
1 -TATCACATATATACACTT
82009683 CATCATCCAT
Statistics
Matches: 234, Mismatches: 15, Indels: 11
0.90 0.06 0.04
Matches are distributed among these distances:
46 38 0.16
47 132 0.56
48 30 0.13
49 34 0.15
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:82009670 original size:143 final size:141
Alignment explanation
Indices: 82009379--82009692 Score: 452
Period size: 143 Copynumber: 2.2 Consensus size: 141
82009369 CCCTTCGGGA
* * * * *
82009379 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
82009444 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTACGCCTCATCACATATATACACTTTCACATTCATCACATC
*
82009509 GGCTATTAGGC
131 GGCCATTAGGC
* * *
82009520 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
* *
82009585 ACTTTCACATTCATCACATTGGCCATT-CGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTACGCCTCATCACATATATACACTTTCACATTCATCACA
* *
82009649 TTGGCCATTCGGCC
129 TCGGCCATTAGG-C
82009663 CTTATCACATATATACAC-TTCATCATCCAT
1 CTTATCACATATATACACTTTCA-CATCCAT
82009693 TATCACTATA
Statistics
Matches: 154, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
141 47 0.31
142 48 0.31
143 59 0.38
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTACGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:82009754 original size:49 final size:49
Alignment explanation
Indices: 82009699--82009800 Score: 186
Period size: 49 Copynumber: 2.1 Consensus size: 49
82009689 CCATTATCAC
82009699 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
* *
82009748 TATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATA
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
82009797 TATA
1 TATA
82009801 CACTCACATC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.34
Consensus pattern (49 bp):
TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
Found at i:82009811 original size:124 final size:120
Alignment explanation
Indices: 82009578--82009819 Score: 396
Period size: 124 Copynumber: 2.0 Consensus size: 120
82009568 TTATCACATA
*
82009578 TATATACACTTTCACATTCATCACATTGGCCATTCGCCTTATCACATATATACACTTTCACATTC
1 TATATACACTTTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACACTTTCACATTC
* *
82009643 ATCACATTGGCCATTCGGCCCTTATCACATATATACACTTCATCATCCATTATCAC
66 ATCACATTGGCCATTCGGCCCTTATCACATATATACACTACATCA-CAATTATCAC
*
82009699 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACA
1 TATATACACTTTCACATTCATCACATCGGCCATT-CGCCTTATCAC--ATATATACACTTTCACA
82009764 TTCATCACATTGGCCATTCGG-CCTTATCACATATATACACTCACATCACAATTATC
63 TTCATCACATTGGCCATTCGGCCCTTATCACATATATACACT-ACATCACAATTATC
82009820 CAAATATACT
Statistics
Matches: 113, Mismatches: 4, Indels: 6
0.92 0.03 0.05
Matches are distributed among these distances:
121 33 0.29
122 10 0.09
123 27 0.24
124 43 0.38
ACGTcount: A:0.30, C:0.30, G:0.06, T:0.34
Consensus pattern (120 bp):
TATATACACTTTCACATTCATCACATCGGCCATTCGCCTTATCACATATATACACTTTCACATTC
ATCACATTGGCCATTCGGCCCTTATCACATATATACACTACATCACAATTATCAC
Found at i:82014139 original size:30 final size:30
Alignment explanation
Indices: 82014087--82014166 Score: 99
Period size: 30 Copynumber: 2.5 Consensus size: 30
82014077 ATTTATAAAA
82014087 TTTTAAATTAATAATGATAAAATTATATTTTAATC
1 TTTTAAA--AATAAT-A-AAAATT-TATTTTAATC
82014122 -TTTAAAAATAATAAAAATTTATTTTAATC
1 TTTTAAAAATAATAAAAATTTATTTTAATC
*
82014151 TTTTAAAAATTATAAA
1 TTTTAAAAATAATAAA
82014167 GATATAGACT
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
29 10 0.23
30 20 0.47
31 1 0.02
32 6 0.14
34 6 0.14
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.46
Consensus pattern (30 bp):
TTTTAAAAATAATAAAAATTTATTTTAATC
Found at i:82019524 original size:9 final size:9
Alignment explanation
Indices: 82019510--82019565 Score: 94
Period size: 9 Copynumber: 6.2 Consensus size: 9
82019500 TTTGGTTAAA
82019510 AATTACCCG
1 AATTACCCG
82019519 AATTACCCG
1 AATTACCCG
82019528 AATTACCCG
1 AATTACCCG
82019537 AATTACCCG
1 AATTACCCG
*
82019546 AATTAACCG
1 AATTACCCG
*
82019555 AATTAACCG
1 AATTACCCG
82019564 AA
1 AA
82019566 AAATACCCGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
9 46 1.00
ACGTcount: A:0.39, C:0.29, G:0.11, T:0.21
Consensus pattern (9 bp):
AATTACCCG
Found at i:82024159 original size:16 final size:16
Alignment explanation
Indices: 82024138--82024205 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
82024128 GTTTGGTTCA
*
82024138 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
82024154 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
82024170 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
*
82024186 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
82024202 CTGT
1 CTGT
82024206 GATAAGTAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.07, G:0.29, T:0.28
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:82024280 original size:44 final size:46
Alignment explanation
Indices: 82024190--82024283 Score: 138
Period size: 44 Copynumber: 2.1 Consensus size: 46
82024180 ATAGAGCTGT
*
82024190 AATGGAATAGAACTGTGATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
***
82024236 AATGGAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
82024280 AATG
1 AATG
82024284 ATGTTGTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.33, C:0.05, G:0.27, T:0.35
Consensus pattern (46 bp):
AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
Found at i:82024632 original size:14 final size:14
Alignment explanation
Indices: 82024613--82024651 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
82024603 GTTTGCCAGT
* *
82024613 AAAATATTTTCTGG
1 AAAATAATTTATGG
82024627 AAAATAATTTATGG
1 AAAATAATTTATGG
82024641 AAAATAATTTA
1 AAAATAATTTA
82024652 CTTTTCTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.49, C:0.03, G:0.10, T:0.38
Consensus pattern (14 bp):
AAAATAATTTATGG
Found at i:82025012 original size:18 final size:18
Alignment explanation
Indices: 82024989--82025023 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82024979 ACGTGGTAGT
*
82024989 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
82025007 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
82025024 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:82025097 original size:18 final size:18
Alignment explanation
Indices: 82025074--82025108 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
82025064 ACGTGGTAGT
*
82025074 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
82025092 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
82025109 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:82025109 original size:85 final size:85
Alignment explanation
Indices: 82024966--82025134 Score: 338
Period size: 85 Copynumber: 2.0 Consensus size: 85
82024956 ATTATCTCCC
82024966 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
1 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
82025031 TTAATACATACTTCATCCGT
66 TTAATACATACTTCATCCGT
82025051 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
1 TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
82025116 TTAATACATACTTCATCCG
66 TTAATACATACTTCATCCG
82025135 GGTAAATTAT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (85 bp):
TAATGATAATCCTACGTGGTAGTCCAACTAGATTTTAAGTGCCAACTAGATCTTAAGTATATCTG
TTAATACATACTTCATCCGT
Found at i:82025167 original size:40 final size:40
Alignment explanation
Indices: 82025116--82025360 Score: 364
Period size: 40 Copynumber: 6.1 Consensus size: 40
82025106 AGTATATCTG
* * *
82025116 TTAATACATACTTCATCCGGGTAAATTATACAATTTTCTG
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
*
82025156 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* * *
82025196 TTAATACATACTTCATCCGGATAAATTATACAGTTTTCTG
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* *
82025236 GTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
*
82025276 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
* ** *
82025316 TTAATATATACTTCGTCCGGATAAATTATACAGTTTTCTA
1 TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
82025356 TTAAT
1 TTAAT
82025361 GTGCTTGTGA
Statistics
Matches: 186, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 186 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (40 bp):
TTAATACATACTTCACCCGGGTAAATTATACAGTTTTCTA
Found at i:82025273 original size:120 final size:120
Alignment explanation
Indices: 82025112--82025354 Score: 423
Period size: 120 Copynumber: 2.0 Consensus size: 120
82025102 CTTAAGTATA
* * *
82025112 TCTGTTAATACATACTTCATCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGG
1 TCTGGTAATACATACTTCACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
82025177 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
* *
82025232 TCTGGTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTATTAATACATACTTTACCCGGG
1 TCTGGTAATACATACTTCACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
* *
82025297 TAAATTATACAGTTTTCTATTAATATATACTTCGTCCGGATAAATTATACAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
82025352 TCT
1 TCT
82025355 ATTAATGTGC
Statistics
Matches: 116, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 116 1.00
ACGTcount: A:0.32, C:0.17, G:0.11, T:0.40
Consensus pattern (120 bp):
TCTGGTAATACATACTTCACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
Found at i:82027518 original size:20 final size:21
Alignment explanation
Indices: 82027493--82027531 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
82027483 CTTTGCCTAG
*
82027493 TTTCGCTTCAAC-GAAATATA
1 TTTCGCTCCAACGGAAATATA
82027513 TTTCGCTCCAACGGAAATA
1 TTTCGCTCCAACGGAAATA
82027532 AATTCTGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (21 bp):
TTTCGCTCCAACGGAAATATA
Found at i:82030387 original size:26 final size:26
Alignment explanation
Indices: 82030358--82030410 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
82030348 TAATGAAAGC
82030358 CTATATGTTTTGGTTATGTAATTAGT
1 CTATATGTTTTGGTTATGTAATTAGT
*
82030384 CTATATGTTTTGGTTATGTAGTTAGT
1 CTATATGTTTTGGTTATGTAATTAGT
82030410 C
1 C
82030411 ATTTAATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.06, G:0.21, T:0.53
Consensus pattern (26 bp):
CTATATGTTTTGGTTATGTAATTAGT
Found at i:82033640 original size:40 final size:40
Alignment explanation
Indices: 82033586--82033743 Score: 246
Period size: 40 Copynumber: 4.0 Consensus size: 40
82033576 CGGATGTAAA
* * *
82033586 AACCAGCACAAATGCCTTCGGGAAGTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGAATTAACCCGGTTATAAT
*
82033626 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGAATTAACCCGGTTATAAT
* *
82033666 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGAATTAACCCGGTTATAAT
82033706 AACCCGCACGAATGCCTTCGGGACA-TAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGA-ATTAACCCGGTTATA
82033744 TTTTTTTTCC
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 111 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGAATTAACCCGGTTATAAT
Found at i:82036432 original size:29 final size:27
Alignment explanation
Indices: 82036414--82036483 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
82036404 ATATTAAGTC
82036414 CACACACTCAGTGCTATATAATCAACT
1 CACACACTCAGTGCTATATAATCAACT
* *
82036441 CGCACACTTAGTGCTATATAATCAAACT
1 CACACACTCAGTGCTATATAATC-AACT
* *
82036469 CGCACACTTAGTGCT
1 CACACACTCAGTGCT
82036484 GTACAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
27 21 0.52
28 19 0.47
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (27 bp):
CACACACTCAGTGCTATATAATCAACT
Found at i:82036477 original size:28 final size:28
Alignment explanation
Indices: 82036416--82036511 Score: 131
Period size: 28 Copynumber: 3.4 Consensus size: 28
82036406 ATTAAGTCCA
*
82036416 CACACTCAGTGCTATATAATC-AACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
82036443 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTATATAATCAAACTCG
* * * *
82036471 CACACTTAGTGCTGTACAATTTAAACCCG
1 CACACTTAGTGCTATATAA-TCAAACTCG
82036500 CACACTTAGTGC
1 CACACTTAGTGC
82036512 CAATCTCATG
Statistics
Matches: 62, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 20 0.32
28 23 0.37
29 19 0.31
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CACACTTAGTGCTATATAATCAAACTCG
Found at i:82036973 original size:12 final size:12
Alignment explanation
Indices: 82036956--82036981 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82036946 TGGGCATACT
82036956 TATGTATATATA
1 TATGTATATATA
82036968 TATGTATATATA
1 TATGTATATATA
82036980 TA
1 TA
82036982 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:82063569 original size:40 final size:39
Alignment explanation
Indices: 82063470--82063686 Score: 224
Period size: 40 Copynumber: 5.5 Consensus size: 39
82063460 GGATGATAAT
* * * *
82063470 CGGGCTAAGTCCCAAAGGCATTTTACGCTAGTGACTAGT-TC
1 CGGGCTAAGTCCCGAAGGCATTGT--GCGAGTTACTA-TATC
* *
82063511 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTACATC
1 CGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATC
* *
82063551 CGGGCTAAGTTCCAAAGGCATTTGTGCGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCA-TTGTGCGAGTTACTATATC
* *
82063591 CGGGCTAAGTCCCGAAGGCATTGACGGGAGTTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTG-TGCGAGTTACTATATC
* *
82063631 CGGGCTATGTCCCGAAGGCATTGAGCGAG-TAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTGTGCGAGTTA-CTATATC
* *
82063670 C-GGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
82063687 TACTTGGCTT
Statistics
Matches: 152, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
38 15 0.10
39 15 0.10
40 100 0.66
41 19 0.12
42 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTGTGCGAGTTACTATATC
Found at i:82064818 original size:6 final size:6
Alignment explanation
Indices: 82064801--82064844 Score: 58
Period size: 6 Copynumber: 7.8 Consensus size: 6
82064791 TCCTCCTATC
*
82064801 TTTTTA TCTTTA TTTTTA --TTT- TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
82064845 TTCATTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 3 0.09
5 3 0.09
6 27 0.82
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:82064826 original size:21 final size:21
Alignment explanation
Indices: 82064801--82064846 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
82064791 TCCTCCTATC
82064801 TTTTTATCTTTATTTTTATTT
1 TTTTTATCTTTATTTTTATTT
*
82064822 TTTTTATTTTTATTTTTATTT
1 TTTTTATCTTTATTTTTATTT
82064843 TTTT
1 TTTT
82064847 CATTTCAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.85
Consensus pattern (21 bp):
TTTTTATCTTTATTTTTATTT
Found at i:82064829 original size:15 final size:16
Alignment explanation
Indices: 82064809--82064851 Score: 63
Period size: 15 Copynumber: 2.8 Consensus size: 16
82064799 TCTTTTTATC
82064809 TTTATTTTTATTTTT-
1 TTTATTTTTATTTTTA
82064824 TTTATTTTTATTTTTA
1 TTTATTTTTATTTTTA
*
82064840 TTT-TTTTCATTT
1 TTTATTTTTATTT
82064852 CAATTTTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 23 0.88
16 3 0.12
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTATTTTTATTTTTA
Found at i:82064857 original size:21 final size:21
Alignment explanation
Indices: 82064812--82064867 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
82064802 TTTTATCTTT
* **
82064812 ATTTTTATTTTTTTTATTTTT
1 ATTTTTATTTTTTTCATTTCA
82064833 ATTTTTATTTTTTTCATTTCA
1 ATTTTTATTTTTTTCATTTCA
*
82064854 ATTTTT-TTATTTTC
1 ATTTTTATTTTTTTC
82064868 TTTTGAAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 7 0.23
21 24 0.77
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (21 bp):
ATTTTTATTTTTTTCATTTCA
Found at i:82067780 original size:13 final size:13
Alignment explanation
Indices: 82067758--82067790 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
82067748 TTGCTTTAGT
82067758 TTAG-TTAGTTAA
1 TTAGTTTAGTTAA
82067770 TTAGTTTAGTTAA
1 TTAGTTTAGTTAA
*
82067783 TTATTTTA
1 TTAGTTTA
82067791 ATAAACAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.58
Consensus pattern (13 bp):
TTAGTTTAGTTAA
Found at i:82104582 original size:40 final size:40
Alignment explanation
Indices: 82104499--82104683 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
82104489 TTGAATGCTG
* * * * *
82104499 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATACA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAA
* * *
82104539 TCCGGATTAAGAT-CTGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGTTACTAAA
* * **
82104579 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAA
* *
82104619 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAA
* * *
82104658 TCCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCTTTG
82104684 AACGAGGAGC
Statistics
Matches: 116, Mismatches: 25, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
39 32 0.28
40 75 0.65
41 9 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAA
Found at i:82104701 original size:79 final size:78
Alignment explanation
Indices: 82104562--82104716 Score: 193
Period size: 79 Copynumber: 2.0 Consensus size: 78
82104552 CTGAAGGCCT
* ** ** *
82104562 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTT
1 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCC-GGTT
*
82104627 AAGTCCCGAAGGCA
65 AAATCCCGAAGGCA
* * * * *
82104641 TTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCCGGTTA
1 TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGTTA
82104706 AATCCCGAAGG
66 AATCCCGAAGG
82104717 TACGTGATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
78 15 0.23
79 49 0.77
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (78 bp):
TTGTGCGAGATACTAAATCCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTAAATCCGGTTA
AATCCCGAAGGCA
Found at i:82112487 original size:40 final size:40
Alignment explanation
Indices: 82112442--82112624 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 40
82112432 GTGCGAGATA
82112442 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTG
* * * *
82112482 TTAAATCCAGGTTAAGTCCCGAAGGCATTCGTGCGAATTG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTG
* * ** *
82112522 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTA
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTG
* * * * **
82112561 CTAAATCCGGGCTATGTCCCGAAGGCATTTGAACGAGGAG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTG
* *
82112601 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
82112625 TACGTGATTT
Statistics
Matches: 121, Mismatches: 21, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
39 47 0.39
40 74 0.61
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTG
Found at i:82112609 original size:79 final size:80
Alignment explanation
Indices: 82112442--82112624 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
82112432 GTGCGAGATA
** *
82112442 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTGTTAAATCCAGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
** **
82112507 CATTCGTGCGAATTG
66 CATTCGAACGAAGAG
* * ** * *
82112522 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
* *
82112586 CATTTGAACGAGGAG
66 CATTCGAACGAAGAG
* *
82112601 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
82112625 TACGTGATTT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 43 0.51
80 27 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTACGAGTTACTAAATCCAGGCTAAGTCCCGAAGG
CATTCGAACGAAGAG
Found at i:82121819 original size:16 final size:16
Alignment explanation
Indices: 82121798--82121846 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
82121788 TTTGGTTCGC
82121798 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
82121814 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
82121830 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
82121846 T
1 T
82121847 TTAATAGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:82121897 original size:45 final size:44
Alignment explanation
Indices: 82121830--82121924 Score: 127
Period size: 45 Copynumber: 2.1 Consensus size: 44
82121820 GGATTAGAGG
** *
82121830 TGTAATGGAATAGAGGTTTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
82121875 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
82121919 TGTAAT
1 TGTAAT
82121925 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 18 0.41
45 26 0.59
ACGTcount: A:0.35, C:0.05, G:0.26, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:82122103 original size:16 final size:16
Alignment explanation
Indices: 82122066--82122107 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
82122056 TTAATCATAT
*
82122066 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
82122082 TT-AAATATATTATAA
1 TTAAAATATATTATAA
82122097 TTAAAATATAT
1 TTAAAATATAT
82122108 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:82122114 original size:14 final size:15
Alignment explanation
Indices: 82122075--82122116 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82122065 TTTAAACATA
*
82122075 ATTATTATTAAATAT
1 ATTATAATTAAATAT
82122090 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
82122104 A-TATAATTTAATA
1 ATTATAATTAAATA
82122117 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:82125956 original size:23 final size:21
Alignment explanation
Indices: 82125930--82125972 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
82125920 TGGCTATCTC
*
82125930 GCCTCAGTGTTTCTAGGACCTCT
1 GCCT-AGTGTTTC-ACGACCTCT
*
82125953 GCCTGGTGTTTCACGACCTC
1 GCCTAGTGTTTCACGACCTC
82125973 GACCAAACCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 7 0.39
23 4 0.22
ACGTcount: A:0.12, C:0.33, G:0.23, T:0.33
Consensus pattern (21 bp):
GCCTAGTGTTTCACGACCTCT
Found at i:82128458 original size:58 final size:59
Alignment explanation
Indices: 82128367--82128487 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
82128357 CCCTCCCCAA
* * * *
82128367 TCCCAAAAGGTACAATTCGGATACCGTTACATGTTCGGTACCTAATAATGAATGAATCG
1 TCCCAAAAGGTACAATTCGGATACCGTTACATGTCCGATACCCAACAATGAATGAATCG
** *
82128426 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGATACCCAACAATGAATGAATCG
1 TCCCAAAAGGTACAATTCGGATACCGTTACATGTCCGATACCCAACAATGAATGAATCG
82128484 TCCC
1 TCCC
82128488 TGTCCCTCCC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTACAATTCGGATACCGTTACATGTCCGATACCCAACAATGAATGAATCG
Found at i:82128910 original size:24 final size:24
Alignment explanation
Indices: 82128883--82128936 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
82128873 CCGGTTAGGT
*
82128883 TCCCGACGGTGCTCCGGCGAGCCA
1 TCCCGACAGTGCTCCGGCGAGCCA
*
82128907 TCCCGGCAGTGCTCCGGCGAGCCA
1 TCCCGACAGTGCTCCGGCGAGCCA
82128931 TCCCGA
1 TCCCGA
82128937 AATATCGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.13, C:0.43, G:0.31, T:0.13
Consensus pattern (24 bp):
TCCCGACAGTGCTCCGGCGAGCCA
Found at i:82129216 original size:42 final size:42
Alignment explanation
Indices: 82129148--82130094 Score: 872
Period size: 42 Copynumber: 22.4 Consensus size: 42
82129138 GCCTTGGACG
* * *
82129148 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82129191 CTATTGGCACCTAGCCCCTTGGTCGTGCGGGAGCCTAGGGCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** *
82129233 CCACCGGTACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGGCA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * * * **
82129275 GCATCGGTAACCTAAGCCCCTGGTCGCGCGGCAGCCTC-GATA
1 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82129317 CCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82129360 CCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
82129402 CCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
82129445 CCATCGGCACCTAGGCCCCTGGTCATGTAGGAGCTTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82129487 CCATCGACAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
82129530 CCATCGGCACCTAGGCCCTCGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** *
82129572 CCATCGGCACCTTGGTGCTTAGAT-GTGCGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCA
*
82129614 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82129656 CCATTGGCACCTAGGCCATTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
**
82129698 CCATCGGCACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGGGTT
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* *
82129740 CCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82129783 CTATCGGCAACCTA-GCCCTTGATCGTGCGAGAACCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82129825 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* ** * * **
82129867 CCATCGGCACCTTGGTGCTTGGAT-GTGCGAGAGCCTTGAACA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * *
82129909 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCATCGTGTA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
82129952 CCATCGGCACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAGCA
1 CCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * ** * *
82129995 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * ** *
82130037 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
82130079 CCATCGGGAACCTAGG
1 CCATC-GGCACCTAGG
82130095 ATGTTGGATG
Statistics
Matches: 751, Mismatches: 130, Indels: 46
0.81 0.14 0.05
Matches are distributed among these distances:
41 35 0.05
42 467 0.62
43 248 0.33
44 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:82129288 original size:85 final size:84
Alignment explanation
Indices: 82129148--82130094 Score: 761
Period size: 85 Copynumber: 11.2 Consensus size: 84
82129138 GCCTTGGACG
* * * * * *
82129148 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACTATTGGCACCTAGCCCCTTGG
1 CCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGCCCCTTGG
*
82129213 TCGTGCGGGAGCCTAGGGCA
65 TCGTGCGGGAGCCTCGGGCA
* * * ** * *
82129233 CCACCGGTACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGGCAGCATCGGTAACCTAAGCCCC-T
1 CCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-AACCT-AGCCCCTT
* * **
82129296 GGTCGCGCGGCAGCCTC-GATA
63 GGTCGTGCGGGAGCCTCGGGCA
* * *
82129317 CCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAGCACCATCGGAACCTAGGCCCC-TG
1 CCATCG-GAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTA-GCCCCTTG
*
82129381 GTCGTGCGGGAGCCTCGGCCA
64 GTCGTGCGGGAGCCTCGGGCA
* * *
82129402 CCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCC-TG
1 CCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTA-GCCCCTTG
* ** * *
82129466 GTCATGTAGGAGCTTCGGCCA
64 GTCGTGCGGGAGCCTCGGGCA
* * * * * *
82129487 CCATCGACAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTCGG
1 CCATCG-GAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGCCCCTTGG
82129552 TCGTGCGGGAGCCTCGGGCA
65 TCGTGCGGGAGCCTCGGGCA
* * ** * *
82129572 CCATCGGCACCTTGGTGCTTAGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGCCCCTTG
*
82129636 GTCGTGCGAGAGCCTCGGG-A
64 GTCGTGCGGGAGCCTCGGGCA
* * * * * *
82129656 CCATTGGCACCTAGGCCATTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGA
1 CCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGCCCCTTGG-
**
82129721 T-GTGCGGGAGCCTCGGGTT
65 TCGTGCGGGAGCCTCGGGCA
* *
82129740 CCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACTATCGGCAACCTAG-CCCTTG
1 CCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGCCCCTTG
* * *
82129804 ATCGTGCGAGAACCTCGGGCA
64 GTCGTGCGGGAGCCTCGGGCA
* * * * * ***
82129825 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGCCCCTTGG
* * **
82129889 AT-GTGCGAGAGCCTTGAACA
65 -TCGTGCGGGAGCCTCGGGCA
* * * * * * **
82129909 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCATCGTGTACCATCGGCACCTTGGTGCCTTG
1 CCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACC-TAGCCCCTTG
*
82129974 GAT-GTGCGGGAGCCTCGAGCA
64 G-TCGTGCGGGAGCCTCGGGCA
* * * * ** * * * * * * ***
82129995 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTGG
1 CCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGCCCCTTGG
*
82130059 AT-GTGCGGGAGCCTCGGACA
65 -TCGTGCGGGAGCCTCGGGCA
82130079 CCATCGGGAACCTAGG
1 CCATC-GGAACCTAGG
82130095 ATGTTGGATG
Statistics
Matches: 702, Mismatches: 136, Indels: 48
0.79 0.15 0.05
Matches are distributed among these distances:
83 37 0.05
84 237 0.34
85 386 0.55
86 42 0.06
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (84 bp):
CCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGCCCCTTGGT
CGTGCGGGAGCCTCGGGCA
Found at i:82129352 original size:127 final size:127
Alignment explanation
Indices: 82129148--82130094 Score: 851
Period size: 127 Copynumber: 7.5 Consensus size: 127
82129138 GCCTTGGACG
* * * * * * *
82129148 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACTATTGGCACCTAGCCCCTTGG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * * ** *
82129213 TCGTGCGGGAGCCTAGGGCACCACCGGTACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGGCA
66 TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * * * ** *
82129275 GCATCGGTAACCTAAGCCCCTGGTCGCGCGGCAGCCTC-GATACCATCGACAACCTAGGCCCTTG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * *
82129339 GTCGTGCGAGAGCCTCGAGCACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCA
65 GTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82129402 CCATCGGCAACCTAGGCGCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* ** * * * * *
82129467 TCATGTAGGAGCTTCGGCCACCATCGACAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCA
66 TCGTGCGGGAGCCTCGGGCACCATCG-GAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * **
82129530 CCATCGGC-ACCTAGGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTAG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT-G
* *
82129594 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
65 GTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82129656 CCATTGGC-ACCTAGGCCATTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
** *
82129720 AT-GTGCGGGAGCCTCGGGTTCCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
66 -TCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
82129783 CTATCGGCAACCT-AGCCCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTTG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * * * ** * * **
82129846 ATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGAGAGCCTTGAACA
65 GTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
** * * * * *
82129909 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCATCGTGTACCATCGGCACCTTGGTGCCTTG
1 CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* * * * * ** * *
82129974 GAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAA
65 G-TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * ** ** * *
82130037 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGGAACCTAGG
1 CCATCGGCAACCTAAGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC-GGCACCTAGG
82130095 ATGTTGGATG
Statistics
Matches: 673, Mismatches: 129, Indels: 35
0.80 0.15 0.04
Matches are distributed among these distances:
125 1 0.00
126 162 0.24
127 377 0.56
128 132 0.20
129 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (127 bp):
CCATCGGCAACCTAAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:82129830 original size:23 final size:23
Alignment explanation
Indices: 82129804--82129872 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
82129794 CTAGCCCTTG
82129804 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
* * ***
82129827 ATCG-GC---AACCTAGGCCTTG
1 ATCGTGCGAGAACCTCGGGCACC
82129846 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
82129869 ATCG
1 ATCG
82129873 GCACCTTGGT
Statistics
Matches: 32, Mismatches: 10, Indels: 8
0.64 0.20 0.16
Matches are distributed among these distances:
19 12 0.38
20 2 0.06
22 2 0.06
23 16 0.50
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (23 bp):
ATCGTGCGAGAACCTCGGGCACC
Found at i:82132777 original size:38 final size:38
Alignment explanation
Indices: 82132735--82132812 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
82132725 GTGAGACAGG
82132735 TTAGTTTTACCCTACTGATGGCCACGTCGCAAAAGTAA
1 TTAGTTTTACCCTACTGATGGCCACGTCGCAAAAGTAA
82132773 TTAGTTTTACCCTACTGATGGCCACGTCGCAAAAGTAA
1 TTAGTTTTACCCTACTGATGGCCACGTCGCAAAAGTAA
82132811 TT
1 TT
82132813 CAACCTAGTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (38 bp):
TTAGTTTTACCCTACTGATGGCCACGTCGCAAAAGTAA
Found at i:82134194 original size:58 final size:58
Alignment explanation
Indices: 82134102--82134215 Score: 183
Period size: 58 Copynumber: 2.0 Consensus size: 58
82134092 CCTAATCCCA
* * *
82134102 AAAGGTAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCGTCTC
1 AAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGTCTC
* *
82134160 AAAGGTAGGATTCAGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCGTC
1 AAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGTC
82134216 CCTGTCCCTC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (58 bp):
AAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCGTCTC
Found at i:82134640 original size:24 final size:24
Alignment explanation
Indices: 82134613--82134664 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
82134603 CCGGTTAGGT
82134613 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
82134637 TCCCGGTGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
82134661 TCCC
1 TCCC
82134665 AGAATATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.42, G:0.35, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:82135034 original size:42 final size:42
Alignment explanation
Indices: 82134859--82135682 Score: 799
Period size: 42 Copynumber: 19.7 Consensus size: 42
82134849 GCTGCTTGGA
* * * * ** *
82134859 CGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACATTTGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGGT
*
82134902 CGTGCGAGAGCCTCGGGCACCATCGGC-ACCTA-GCCCTTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGT
* * *
82134943 CGTGCGGGAGCCTC-GGCACCA-CTGGC-ACCTTGGTGCTTGGAT
1 CGTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGG-CCCTGG-T
*
82134985 -GTGCGGGAGCCTAGGGCACCATCGGCAACCTAGGCCCTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
* ** **
82135026 TGCACGGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGT
* *
82135068 CGTGCGAGAGCCTC-GGCACCATC-G-AACCTAGGCCCTAGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
* *
82135107 CGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGC-CCTGGT
* *
82135150 CGTACGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
* ** * *
82135191 CATGTAGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGT
* * * *
82135234 CCTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGG-T
82135277 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
82135318 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGT
* * * *
82135361 CGTGCGAGAGCCTCGGG-ACCGTTGGC-ACCTAGGCCATTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC-CTGGT
* *
82135402 CGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGAT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGG-T
**
82135445 -GTGCGGGAGCCTCGGGTTCCATCGGCAACCT-GGCCCCTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGGT
* * * *
82135486 CGTGCGGGAGCCTCGGTCACCACCGGCAACCTAGGCCTTGAT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
* * * *
82135528 CGTG-GGAGAACCTCGGGCACCACCGGCAACCTAGGCCTTGAT
1 CGTGCGG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
* * * * ** *
82135570 CGTGCGAGAACCTCGGACACCATCGGC-ACCTTGGTGCTTTGAT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCCTGGT
** *
82135613 -GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGT
1 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGT
*
82135655 CGTGCGGGAGCCTCGGGCACTATCGGCA
1 CGTGCGGGAGCCTCGGGCACCATCGGCA
82135683 CCATGGTGCC
Statistics
Matches: 659, Mismatches: 86, Indels: 72
0.81 0.11 0.09
Matches are distributed among these distances:
39 17 0.03
40 34 0.05
41 122 0.19
42 328 0.50
43 158 0.24
ACGTcount: A:0.16, C:0.34, G:0.33, T:0.18
Consensus pattern (42 bp):
CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGGT
Found at i:82135079 original size:84 final size:84
Alignment explanation
Indices: 82134855--82135838 Score: 891
Period size: 84 Copynumber: 11.7 Consensus size: 84
82134845 CATTGCTGCT
* * * * * * * * *
82134855 TGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACATTTGTCGTGCGAGAGCCTCGGGC
1 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
82134920 ACCATCGGCACCTA-GCCC
66 ACCATCGGCACCTAGGCCC
* ** *
82134938 TTGG-TCGTGCGGGAGCCTC-GGCACCA-CTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTA
1 -TGGAT-GTGCGGGAGCCTCGGGCACCATC-GGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC
82134998 GGGCACCATCGGCAACCTAGGCCC
62 GGGCACCATCGGC-ACCTAGGCCC
* ** ** *
82135022 TGGTTGCACGGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGC
1 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
*
82135085 ACCATC-GAACCTAGGCCC
66 ACCATCGGCACCTAGGCCC
* * * * *
82135103 TAG-TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGGTCGTACGGGAGCCTCGGC
1 TGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
82135167 CACCATCGGCACCTAGGCCC
65 CACCATCGGCACCTAGGCCC
* * * *
82135187 TGGTCATGT--AGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGGTCCTGCGGGAGCCTCGG
1 TGG--ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * *
82135250 GCACCATCGGCACCTTGGTGCT
64 GCACCATCGGCACCTAGG-CCC
82135272 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGC
1 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
82135336 ACCATCGGCAACCTAGGCCC
66 ACCATCGGC-ACCTAGGCCC
* * * * *
82135356 TTGG-TCGTGCGAGAGCCTCGGG-ACCGTTGGC-ACCTAGGCCATTGGTCGTGCGAGAGCCTCGG
1 -TGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
82135418 CCACCATCGGCACCTAGGCCC
64 GCACCATCGGCACCTAGGCCC
** * *
82135439 TTGGATGTGCGGGAGCCTCGGGTTCCATCGGCAACCT-GGCCCCTGGTCGTGCGGGAGCCTCGGT
1 -TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
*
82135503 CACCACCGGCAACCTAGG-CC
65 CACCATCGGC-ACCTAGGCCC
* * * * * *
82135523 TTGATCGTG-GGAGAACCTCGGGCACCACCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGG
1 TGGAT-GTGCGG-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* * * *
82135586 ACACCATCGGCACCTTGGTGCT
64 GCACCATCGGCACCTAGG-CCC
* ** *
82135608 TTGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGC
1 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * *
82135673 ACTATCGGCACCATGGTGCCT
66 ACCATCGGCACC-TAG-GCCC
* ** * * * ** *
82135694 TGGATGTGCGGGAGCTTCAAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAG
1 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * * * *
82135757 AAGCATTGGCACCTTGGTGCT
65 CACCATCGGCACCTAGG-CCC
* * * *
82135778 TGGATGTGCGGGAGCCTC-GACACCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
82135839 AGCAGCAAGG
Statistics
Matches: 746, Mismatches: 115, Indels: 78
0.79 0.12 0.08
Matches are distributed among these distances:
80 1 0.00
81 23 0.03
82 72 0.10
83 117 0.16
84 353 0.47
85 146 0.20
86 32 0.04
87 2 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (84 bp):
TGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGC
ACCATCGGCACCTAGGCCC
Found at i:82135762 original size:42 final size:42
Alignment explanation
Indices: 82134903--82135874 Score: 357
Period size: 42 Copynumber: 23.2 Consensus size: 42
82134893 GACATTTGTC
* * * * **
82134903 GTGCGAGAGCCTCGGGCACCATCGGCACC-TAGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
*
82134943 CGTGCGGGAGCCTCG-GCACCA-CTGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATC-GGCACCTTGGTGCTTGGAT
* * * * * * *
82134985 GTGCGGGAGCCTAGGGCACCATCGGCAACCTAGG-CCCTGGTT
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
** * * * **
82135027 GCACGGGAGCCTCGA-TACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * * * * *
82135068 CGTGCGAGAGCCTCG-GCACCATC-GAACCTAGG-CCCTAG-T
1 -GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * *
82135107 CGTGCGGGAGCCTCG-GCCACCATCGGCAACCTAGGCGCTTGG-T
1 -GTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCTTGGAT
* * * * *
82135150 CGTACGGGAGCCTCG-GCCACCATCGGCACCTAGG-CCCTGGTCAT
1 -GTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGTGCTTGG--AT
* * * * **
82135194 GT--AGGAGCTTCG-GCCACCATCGGCAACCTAGGCCCTTGG-T
1 GTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCTTGGAT
* * *
82135234 CCTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * * * *
82135277 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * **
82135318 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-T
1 -GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * * * * *
82135361 CGTGCGAGAGCCTCG-GGACCGTTGGCACCTAGG-CCATTGG-T
1 -GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGC-TTGGAT
* * * **
82135402 CGTGCGAGAGCCTCG-GCCACCATCGGCACCTAGGCCCTTGGAT
1 -GTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGTGCTTGGAT
* *** ** *
82135445 GTGCGGGAGCCTCGGGTTCCATCGGCAACC-TGGCCCCTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * *
82135486 CGTGCGGGAGCCTCG-GTCACCACCGGCAACCTAGG-CCTT-GAT
1 -GTGCGGGAGCCTCGAG-CAGCATCGGC-ACCTTGGTGCTTGGAT
* * * * * *
82135528 CGTG-GGAGAACCTCGGGCACCACCGGCAACCTAGG-CCTT-GAT
1 -GTGCGG-GAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* * * *
82135570 CGTGCGAGAACCTCG-GACACCATCGGCACCTTGGTGCTTTGAT
1 -GTGCGGGAGCCTCGAG-CAGCATCGGCACCTTGGTGCTTGGAT
* * * **
82135613 GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGCTTGGAT
* *
82135655 CGTGCGGGAGCCTCGGGCA-CTATCGGCACCATGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGC-ATCGGCACCTTGGTG-CTTGGAT
* * *
82135699 GTGCGGGAGCTTCAAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* *
82135741 GTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
* * *
82135783 GTGCGGGAGCCTCGA-CACCATCGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGC-ACCTTGGTGC-TTGGAT
* ** * *
82135825 GTGCGGGTGCCTCGAGCAGCAAGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGAT
82135868 GTGCGGG
1 GTGCGGG
82135875 CTAAAGAAAA
Statistics
Matches: 777, Mismatches: 100, Indels: 106
0.79 0.10 0.11
Matches are distributed among these distances:
39 21 0.03
40 29 0.04
41 127 0.16
42 408 0.53
43 187 0.24
44 5 0.01
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.18
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGAT
Found at i:82135853 original size:126 final size:125
Alignment explanation
Indices: 82134837--82135874 Score: 747
Period size: 126 Copynumber: 8.2 Consensus size: 125
82134827 GGTGTGGGAG
* * * * * * * *
82134837 CATCGGCACATTGCTGCTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACATTTG-
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA-ACCATCGGC-ACCTAGG-CCTTGGA
* *
82134901 TCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGCCCTTGG-TCGTGCGGGAGCCTCG-GCAC
63 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGAT-GTGCGGGAGCCTCGAGCAC
* * *
82134962 CA-CTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTAGGGCACCATCGGCAACCTAGGCCCTGG-
1 CATC-GGCACCTTGGTGCTTGGATGTGCGGGAGCCT-CGGAACCATCGGC-ACCTAGGCCTTGGA
* ** ** *
82135025 TTGCACGGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCG-GCAC
63 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCAC
* * * * * *
82135087 CATC-GAACCTAGG-CCCTAG-TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCGCTTGG
1 CATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG-AACCATCGGC-ACCTAGGC-CTTGG
* * * * *
82135149 -TCGTACGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTGGTCATGT--AGGAGCTTCG-GCC
62 ATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGG--ATGTGCGGGAGCCTCGAG-C
82135209 AC
124 AC
* ** * * * *
82135211 CATCGGCAACCTAGGCCCTTGG-TCCTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGG
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTC-GGAACCATCGGCACCTAGG-CCTTGG
* *
82135275 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTGG-TCGTGCGGGAGCCTCGGGCAC
62 ATCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGAT-GTGCGGGAGCCTCGAGCAC
* ** * * * *
82135338 CATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGACCGTTGGCACCTAGGCCATTGG-
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGAACCATCGGCACCTAGGCC-TTGGA
* * * **
82135401 TCGTGCGAGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGTTC
63 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAGCCTCGAGCAC
** * * *
82135464 CATCGGCAACC-TGGCCCCTGG-TCGTGCGGGAGCCTCGGTCACCACCGGCAACCTAGGCCTT-G
1 CATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG-AACCATCGGC-ACCTAGGCCTTGG
* * * *
82135526 ATCGTG-GGAGAACCTCGGGCACCACCGGCAACCTAGGCCTT-GATCGTGCGAGAACCTCG-GAC
62 ATCGTGCGG-GAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGAT-GTGCGGGAGCCTCGAG-C
82135588 AC
124 AC
* * *
82135590 CATCGGCACCTTGGTGCTTTGATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGG-
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGA-ACCATCGGC-ACCTAGG-CCTTGGA
* * * * *
82135654 TCGTGCGGGAGCCTCGGGCACTATCGGC-ACCATGGTGCCTTGGATGTGCGGGAGCTTCAAGCAG
63 TCGTGCGGGAGCCTCGGGCACCATCGGCAACC-TAG-GCCTTGGATGTGCGGGAGCCTCGAGCAC
* * * * *
82135718 CATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTGGAT
1 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCG-GAACCATCGGCACCTAGG-CCTTGGAT
* * * *
82135783 -GTGCGGGAGCCTC-GACACCATCGGCAACCTAGGACGTTGGATGTGCGGGTGCCTCGAGCAG
64 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGGATGTGCGGGAGCCTCGAGCAC
** * *
82135844 CAAGGGCACCCTGGTGGCTCGGATGTGCGGG
1 CATCGGCACCTTGGT-GCTTGGATGTGCGGG
82135875 CTAAAGAAAA
Statistics
Matches: 757, Mismatches: 106, Indels: 98
0.79 0.11 0.10
Matches are distributed among these distances:
122 3 0.00
123 57 0.08
124 60 0.08
125 130 0.17
126 261 0.34
127 175 0.23
128 66 0.09
129 5 0.01
ACGTcount: A:0.16, C:0.32, G:0.34, T:0.19
Consensus pattern (125 bp):
CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGAACCATCGGCACCTAGGCCTTGGATCG
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCTTGGATGTGCGGGAGCCTCGAGCAC
Found at i:82143464 original size:57 final size:60
Alignment explanation
Indices: 82143396--82143519 Score: 155
Period size: 57 Copynumber: 2.0 Consensus size: 60
82143386 CCCTCCCCAA
* *
82143396 TCCCAAAAGGTAGAATTCGGATACTGTTAC-TGTTCGGTA-CCCAATAATGAATGAACCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCCAATAATGAATGAACCG
* *
82143454 TCCC-AAAGGTAGAATTCAGATACCGTTGCATGTTCGGTATCCGTCCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTA--C--CCCAATAATGAATGAACCG
82143517 TCC
1 TCC
82143520 ATGTCCCTCC
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
57 22 0.39
58 13 0.23
63 21 0.38
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.27
Consensus pattern (60 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCCAATAATGAATGAACCG
Found at i:82143969 original size:24 final size:24
Alignment explanation
Indices: 82143902--82143971 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
82143892 GGTTCTGGCG
* * * *
82143902 GTGCTCCAGCGATCCATTCCGGCG
1 GTGCTCCGGCGAGCCATCCCGGCA
**
82143926 GTGCTCCGGCGAGCTTTCCCGGCA
1 GTGCTCCGGCGAGCCATCCCGGCA
*
82143950 GTGCTCCGGTGAGCCATCCCGG
1 GTGCTCCGGCGAGCCATCCCGG
82143972 AATATAGAAA
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.10, C:0.37, G:0.33, T:0.20
Consensus pattern (24 bp):
GTGCTCCGGCGAGCCATCCCGGCA
Found at i:82144471 original size:21 final size:21
Alignment explanation
Indices: 82144446--82144487 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
82144436 TTTAAAATAC
*
82144446 TCCATACTCCATTTTACATTT
1 TCCATACACCATTTTACATTT
82144467 TCCATACACCATTTTACATTT
1 TCCATACACCATTTTACATTT
82144488 GTTACGTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.00, T:0.45
Consensus pattern (21 bp):
TCCATACACCATTTTACATTT
Found at i:82148684 original size:37 final size:37
Alignment explanation
Indices: 82148643--82148716 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
82148633 ACAGGGACTC
*
82148643 TATAAGCTTAAACAATTAATTGTAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
*
82148680 TATAAGCTTAAACAATTAGTTGCAAAATTATAATTAA
1 TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
82148717 CAATTTGATG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (37 bp):
TATAAGCTTAAACAATTAATTGCAAAATTATAATTAA
Found at i:82149397 original size:16 final size:18
Alignment explanation
Indices: 82149376--82149419 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
82149366 ATGTTAAATC
*
82149376 ATTTGAT-TGA-AGTCTA
1 ATTTGATATGATAGTATA
82149392 ATTTGAATATGATAGTATA
1 ATTTG-ATATGATAGTATA
82149411 ATTTGATAT
1 ATTTGATAT
82149420 ACTTTAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 2 0.08
18 7 0.29
19 10 0.42
ACGTcount: A:0.36, C:0.02, G:0.16, T:0.45
Consensus pattern (18 bp):
ATTTGATATGATAGTATA
Found at i:82151053 original size:43 final size:43
Alignment explanation
Indices: 82150996--82151163 Score: 203
Period size: 43 Copynumber: 3.9 Consensus size: 43
82150986 GGGTGTTATA
* * *
82150996 GTGTGACAGTATATTTTCTTC-GATTTATCCGATGATGCACTGT
1 GTGTGCCAGTATATTTTCTTCAG-TTTATCCAATGATGCACTAT
* *
82151039 GTGTGCCAGCATATTTTCTTCAGTTTATCCGATGATGCACTAT
1 GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCACTAT
* *
82151082 GTGTGCTAGTATATTTTCTTCAGTTTATCCAATGACGCACTAT
1 GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCACTAT
* * ** * *
82151125 ATGTTCCAGTATAGATACTTCAATTTATCCAATGATGCA
1 GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCA
82151164 TTATATATGC
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
43 108 0.99
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (43 bp):
GTGTGCCAGTATATTTTCTTCAGTTTATCCAATGATGCACTAT
Found at i:82151146 original size:86 final size:86
Alignment explanation
Indices: 82151003--82151247 Score: 260
Period size: 86 Copynumber: 2.8 Consensus size: 86
82150993 ATAGTGTGAC
* * * ** *
82151003 AGTATATTTTCTTCGATTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAGTTTATC
1 AGTATATTTTCTTCGATTTATCCGATGATGCACTGTATGTTCCAGTATAGATACTTCAGTTTATC
* *
82151068 CGATGATGCACTATGTGTGCT
66 CGATGATGCACTATATATGCT
* * * *
82151089 AGTATATTTTCTTC-AGTTTATCCAATGACGCACTATATGTTCCAGTATAGATACTTCAATTTAT
1 AGTATATTTTCTTCGA-TTTATCCGATGATGCACTGTATGTTCCAGTATAGATACTTCAGTTTAT
* *
82151153 CCAATGATGCATTATATATGCT
65 CCGATGATGCACTATATATGCT
** * * * ** *
82151175 AGTATAGATACTTTGCTTTATTTGATGATGCACTGTAT-TTGCTAGTATAGATACTTCAGTTTAT
1 AGTATATTTTCTTCGATTTATCCGATGATGCACTGTATGTT-CCAGTATAGATACTTCAGTTTAT
82151239 CCGATGATG
65 CCGATGATG
82151248 AGATGCTTCA
Statistics
Matches: 129, Mismatches: 27, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
85 3 0.02
86 126 0.98
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (86 bp):
AGTATATTTTCTTCGATTTATCCGATGATGCACTGTATGTTCCAGTATAGATACTTCAGTTTATC
CGATGATGCACTATATATGCT
Found at i:82151169 original size:43 final size:43
Alignment explanation
Indices: 82151019--82151247 Score: 226
Period size: 43 Copynumber: 5.3 Consensus size: 43
82151009 TTTTCTTCGA
* * * * ** *
82151019 TTTATCCGATGATGCACTGTGTGTGCCAGCATATTTTCTTCAG
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
* ** *
82151062 TTTATCCGATGATGCACTATGTGTGCTAGTATATTTTCTTCAG
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * * *
82151105 TTTATCCAATGACGCACTATATGTTCCAGTATAGATACTTCAA
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * *
82151148 TTTATCCAATGATGCATTATATATGCTAGTATAGATACTT-TG
1 TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
** * *
82151190 CTTTATTTGATGATGCACTGTATTTGCTAGTATAGATACTTCAG
1 -TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
82151234 TTTATCCGATGATG
1 TTTATCCGATGATG
82151248 AGATGCTTCA
Statistics
Matches: 156, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
43 155 0.99
44 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (43 bp):
TTTATCCGATGATGCACTATATGTGCTAGTATAGATACTTCAG
Found at i:82151257 original size:25 final size:25
Alignment explanation
Indices: 82151223--82151272 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
82151213 TTGCTAGTAT
*
82151223 AGATACTTCAGTTTATCCGATGATG
1 AGATACTTCAATTTATCCGATGATG
*
82151248 AGATGCTTCAATTTATCCGATGATG
1 AGATACTTCAATTTATCCGATGATG
82151273 CACTGTATGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (25 bp):
AGATACTTCAATTTATCCGATGATG
Found at i:82151336 original size:111 final size:111
Alignment explanation
Indices: 82151137--82151350 Score: 263
Period size: 111 Copynumber: 1.9 Consensus size: 111
82151127 GTTCCAGTAT
* * * **
82151137 AGATACTTCAATTTATCCAATGATGCATTATATATGCTAGTATAGATACTTTGCTTTATTTGATG
1 AGATACTTCAATTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTGCGTTATCCGATG
* *
82151202 ATGCACTGTATTTGCTAGTATAGATACTTCAGTTTATCCGATGATG
66 ATGCACTGTATATGCTAGTATAGATACTTCAATTTATCCGATGATG
* * * *
82151248 AGATGCTTCAATTTATCCGATGATGCACTGTATGTGCCAGTATAGATA-TTT-CAGGTTATCCGA
1 AGATACTTCAATTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTGC--GTTATCCGA
* *
82151311 TTATGCATTGTATATG-TCAGTATAGATACTTCAATTTATC
64 TGATGCACTGTATATGCT-AGTATAGATACTTCAATTTATC
82151351 TAATTATGCA
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
109 1 0.01
110 4 0.05
111 82 0.94
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (111 bp):
AGATACTTCAATTTATCCAATGATGCACTATATATGCCAGTATAGATACTTTGCGTTATCCGATG
ATGCACTGTATATGCTAGTATAGATACTTCAATTTATCCGATGATG
Found at i:82151372 original size:43 final size:43
Alignment explanation
Indices: 82151248--82151373 Score: 162
Period size: 43 Copynumber: 2.9 Consensus size: 43
82151238 TCCGATGATG
* * *
82151248 AGATGCTTCAATTTATCCGATGATGCACTGTATGTGCCAGTAT
1 AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAGTAT
* ** * *
82151291 AGATATTTCAGGTTATCCGATTATGCATTGTATATGTCAGTAT
1 AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAGTAT
**
82151334 AGATACTTCAATTTATCTAATTATGCACTGTATGTGTCAG
1 AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAG
82151374 GATAATTGTG
Statistics
Matches: 68, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (43 bp):
AGATACTTCAATTTATCCGATTATGCACTGTATGTGTCAGTAT
Found at i:82153429 original size:40 final size:40
Alignment explanation
Indices: 82153351--82153526 Score: 216
Period size: 40 Copynumber: 4.4 Consensus size: 40
82153341 ACCCAAGTAT
* *
82153351 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
82153390 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
82153430 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
82153470 CTTC-GGACTTAGCCCGGGTATAG-CAACTACTCGCAAAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
82153512 CTTCGGGACTTAGCC
1 CTTCGGGACTTAGCC
82153527 TGTAACACCC
Statistics
Matches: 120, Mismatches: 10, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
38 1 0.01
39 33 0.28
40 62 0.52
41 1 0.01
42 13 0.11
43 10 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:82155118 original size:29 final size:29
Alignment explanation
Indices: 82155055--82155122 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
82155045 TAATCAACCA
82155055 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* * **
82155084 CACACACTTAGTGCGATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
82155113 CGCACACTTA
1 CGCACACTTA
82155123 CCTTTTCCGC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:82155263 original size:29 final size:29
Alignment explanation
Indices: 82155229--82155331 Score: 165
Period size: 29 Copynumber: 3.6 Consensus size: 29
82155219 TAATCAACCG
82155229 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
82155258 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGTACTTTAAACT
*
82155287 CGCACACTTAGTG-C-TGTACAATTTAAACC
1 CGCACACTTAGTGCCATGTAC--TTTAAACT
82155316 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
82155332 ATCTCATGAC
Statistics
Matches: 69, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
27 5 0.07
28 1 0.01
29 62 0.90
30 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGTACTTTAAACT
Found at i:82163417 original size:170 final size:170
Alignment explanation
Indices: 82163122--82163431 Score: 532
Period size: 169 Copynumber: 1.8 Consensus size: 170
82163112 AACTCAAGGT
* *
82163122 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* *
82163187 GAAAATATATACTGGGTTGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGCA
66 GAAAATATATACTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
82163252 CTTTAAACTCACACCTTGTGCCATGCATTTCAGTTCGCAC
131 CTTTAAACTCACACCTTGTGCCATGCATTTCAGTTCGCAC
82163292 ACTTACCTTTT-CGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * * *
82163356 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATACTGGGTT-GCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGC
82163421 ACTTTAAACTC
130 ACTTTAAACTC
82163432 GCACACTTAG
Statistics
Matches: 131, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
169 68 0.52
170 63 0.48
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (170 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATACTGGGTTGCACACATAATGCTTAATAATCAACCACGCACACTTAGTGCCATGCA
CTTTAAACTCACACCTTGTGCCATGCATTTCAGTTCGCAC
Found at i:82163436 original size:29 final size:30
Alignment explanation
Indices: 82163397--82163475 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
82163387 CTTAATAATC
82163397 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
82163427 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
82163456 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
82163476 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:82165017 original size:15 final size:15
Alignment explanation
Indices: 82164994--82165027 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
82164984 AAAAGATGAT
82164994 AAAG-AAAAAAAAGA
1 AAAGAAAAAAAAAGA
82165008 AAAGAAAAAAAAAGA
1 AAAGAAAAAAAAAGA
*
82165023 GAAGA
1 AAAGA
82165028 GCATATGTAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAGAAAAAAAAAGA
Found at i:82166739 original size:43 final size:42
Alignment explanation
Indices: 82166681--82166842 Score: 159
Period size: 43 Copynumber: 3.8 Consensus size: 42
82166671 CAATGCCAAC
* * *
82166681 GTCCTAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCA-T
* *
82166724 GTCCCAGACAAGGTCTTACATGAAATCAAATA-CGATGTCGAT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCGATG-CCAT
* * *
82166766 GTCCAAGACATGATCTTACATGTAAATCTCAA-ATCGATGCCAAT
1 GTCCCAGACATGGTCTTACATG-AAATC-AAATATCGATGCC-AT
* * *
82166810 GT-CCAGACGTGGTCTTACACGAAATCACATATC
1 GTCCCAGACATGGTCTTACATGAAATCAAATATC
82166843 AAAATCCTAT
Statistics
Matches: 97, Mismatches: 16, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
41 1 0.01
42 33 0.34
43 52 0.54
44 11 0.11
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCGATGCCAT
Found at i:82168605 original size:11 final size:10
Alignment explanation
Indices: 82168577--82168601 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
82168567 TTTATAATAA
82168577 ATTTTGATTT
1 ATTTTGATTT
82168587 ATTTTGATTT
1 ATTTTGATTT
82168597 ATTTT
1 ATTTT
82168602 TGATAGATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:82181679 original size:27 final size:27
Alignment explanation
Indices: 82181649--82181826 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
82181639 ATATTGAGCC
* *
82181649 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
82181676 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
82181703 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
82181731 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
82181758 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
82181785 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
82181812 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82181827 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82181788 original size:82 final size:81
Alignment explanation
Indices: 82181670--82181825 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
82181660 TGCTATATAA
* * *
82181670 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTC-GAATCGCA
82181735 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
82181752 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCA
82181816 CACTTAGTGC
65 CACTTAGTGC
82181826 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 19 0.29
82 47 0.71
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82187047 original size:23 final size:23
Alignment explanation
Indices: 82186982--82187062 Score: 90
Period size: 23 Copynumber: 3.4 Consensus size: 23
82186972 AAGATTACTA
* **
82186982 TTCAGCTCAAAAGAGCTTGCCGT
1 TTCAGCTCAATAGAGCTTATCGT
*
82187005 TTTAGCTCAATAGAGCTTATCGT
1 TTCAGCTCAATAGAGCTTATCGT
* *
82187028 TTCAGCTCAATAGAGTTTATTGT
1 TTCAGCTCAATAGAGCTTATCGT
82187051 TCATCAGCTCAA
1 T--TCAGCTCAA
82187063 GAAGAGGTTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
23 40 0.82
25 9 0.18
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (23 bp):
TTCAGCTCAATAGAGCTTATCGT
Done.