Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 256 of 295
Found at i:82193174 original size:26 final size:26
Alignment explanation
Indices: 82193145--82193196 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
82193135 AACCTACACA
*
82193145 TAAGCAACCAAAACTAATACAAGGCT
1 TAAGCAACCAAAACCAATACAAGGCT
82193171 TAAGCAACCAAAACCAATACAAGGCT
1 TAAGCAACCAAAACCAATACAAGGCT
82193197 ATCTTATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.50, C:0.25, G:0.12, T:0.13
Consensus pattern (26 bp):
TAAGCAACCAAAACCAATACAAGGCT
Found at i:82193952 original size:46 final size:45
Alignment explanation
Indices: 82193849--82194063 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 45
82193839 ATATCTTTAT
* * *
82193849 CGATGCCATGTCCCAAACATTGTCTTACACTGAC-ACATCTC-ATAGC
1 CGATG-CATGTCCCAAACA-TGTCTTACACTGGCTTCATCTCGA-GGC
** * *
82193895 CGACACATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTT-CATCTCGAGGC
* * * * * *
82193941 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGC-TTCATCTCGAGGC
* *
82193987 CGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TCAT-CTCGAGGC
*
82194035 CGATGCATGTCTCAAACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
82194064 AGGTCACACA
Statistics
Matches: 139, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 13 0.09
45 12 0.09
46 63 0.45
47 28 0.20
48 22 0.16
49 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTTCATCTCGAGGC
Found at i:82194014 original size:94 final size:91
Alignment explanation
Indices: 82193849--82194065 Score: 246
Period size: 94 Copynumber: 2.3 Consensus size: 91
82193839 ATATCTTTAT
*
82193849 CGATGCCATGTCCCAAACATTGTCTTACACT-GACACATCTCATAGCCGACACATGTCCCAGACA
1 CGATG-CATGTCCCAAACA-TGTCTTACACTAGACACATCTCATAGCCGACACATGTCCCAAACA
* *
82193913 TGTCTTACACTGGCT-TACGT-CTCGAGGC
64 TGTCTTACACTGGCTCT-CATAAT-GAGGC
* * *
82193941 CGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGC-CATGTCCCAAA
1 CGATGCATGTCCCAAACATGTCTTACACTAG-ACACATCTCATA-GCCGA--CACATGTCCCAAA
*
82194004 CATGGTCTTACACTGGCTCTCATAATGTGGC
62 CAT-GTCTTACACTGGCTCTCATAATGAGGC
*
82194035 CGATGCATGTCTCAAACATGTCTTACACTAG
1 CGATGCATGTCCCAAACATGTCTTACACTAG
82194066 GTCACACAAG
Statistics
Matches: 108, Mismatches: 9, Indels: 14
0.82 0.07 0.11
Matches are distributed among these distances:
90 11 0.10
91 14 0.13
92 18 0.17
93 13 0.12
94 50 0.46
95 2 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (91 bp):
CGATGCATGTCCCAAACATGTCTTACACTAGACACATCTCATAGCCGACACATGTCCCAAACATG
TCTTACACTGGCTCTCATAATGAGGC
Found at i:82198438 original size:45 final size:45
Alignment explanation
Indices: 82198387--82198548 Score: 238
Period size: 45 Copynumber: 3.6 Consensus size: 45
82198377 GTGACATGTA
*
82198387 AGCCAGTGTAAGACCATGTTGGACATGGCATCGATGTTGATTGTG
1 AGCCAGTGTAAGACCATGTTGGACATGGCATCGGTGTTGATTGTG
82198432 AGCCAGTGTAAGACCATGTTGGACATGGCATCGGTG-TGATTGTG
1 AGCCAGTGTAAGACCATGTTGGACATGGCATCGGTGTTGATTGTG
** *
82198476 AGCCAGTGTAAGACCATGTTGGACATGGCATCGGCATTGATTATG
1 AGCCAGTGTAAGACCATGTTGGACATGGCATCGGTGTTGATTGTG
* * *
82198521 AACTAGTATAAGA-CATTGTTGGACATGG
1 AGCCAGTGTAAGACCA-TGTTGGACATGG
82198549 GACATGGCAT
Statistics
Matches: 108, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
44 44 0.41
45 64 0.59
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (45 bp):
AGCCAGTGTAAGACCATGTTGGACATGGCATCGGTGTTGATTGTG
Found at i:82209883 original size:43 final size:43
Alignment explanation
Indices: 82209831--82209942 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
82209821 ATATATCGAC
*
82209831 GCCACTGTCCCAGACATGGTCTTACAAAAAATCACAATACG-AT
1 GCCAATGTCCCAGACATGGTCTTACAAAAAATCACAATA-GAAT
* * * * *
82209874 GCCAATGTCCAAGACATGTTCTTGCACATAATCACAATAGAAT
1 GCCAATGTCCCAGACATGGTCTTACAAAAAATCACAATAGAAT
*
82209917 GCCAATGTCCCAGACATCGTCTTACA
1 GCCAATGTCCCAGACATGGTCTTACA
82209943 TGTAATCACA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 57 0.98
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCAATGTCCCAGACATGGTCTTACAAAAAATCACAATAGAAT
Found at i:82210117 original size:47 final size:47
Alignment explanation
Indices: 82210048--82210184 Score: 265
Period size: 47 Copynumber: 2.9 Consensus size: 47
82210038 TTCTTGCTCA
*
82210048 TATTTGCTCGTTCGACATTCATAGCAATTCAATGATAATAAAACATT
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
82210095 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
82210142 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAA
1 TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAA
82210185 TATATATAAT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.36
Consensus pattern (47 bp):
TATTTGCTCGTTCAACATTCATAGCAATTCAATGATAATAAAACATT
Found at i:82213954 original size:19 final size:19
Alignment explanation
Indices: 82213930--82214020 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
82213920 ATAATCTTCA
82213930 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82213949 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
82213968 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
82213985 ATGAT-TGCAATCTTCGAT
1 ATGATATGCAATCTTAGAT
82214003 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
82214021 AGATATAATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
17 16 0.24
18 15 0.22
19 36 0.54
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:82214334 original size:17 final size:17
Alignment explanation
Indices: 82214310--82214344 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82214300 TGTTTCCCAG
*
82214310 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
82214328 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
82214345 GCATTATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:82218859 original size:93 final size:93
Alignment explanation
Indices: 82218730--82218901 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
82218720 CGCCCATAAG
* * *
82218730 CGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
82218795 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
82218823 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
82218888 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
82218902 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:82218898 original size:46 final size:46
Alignment explanation
Indices: 82218723--82218898 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
82218713 TGTAACCCGC
* * * *
82218723 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* * *
82218769 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
82218819 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
82218862 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
82218899 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:82218917 original size:46 final size:46
Alignment explanation
Indices: 82218772--82218910 Score: 135
Period size: 47 Copynumber: 3.0 Consensus size: 46
82218762 TTCGCATCCA
*
82218772 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
82218820 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
82218865 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
82218911 CTAGTGACAT
Statistics
Matches: 74, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.38
47 29 0.39
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:82219353 original size:30 final size:30
Alignment explanation
Indices: 82219319--82219378 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
82219309 ATTTAATATG
82219319 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
82219349 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
82219379 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:82225510 original size:78 final size:78
Alignment explanation
Indices: 82225381--82225629 Score: 401
Period size: 78 Copynumber: 3.2 Consensus size: 78
82225371 CGACGGAGAG
*
82225381 CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGCAG
1 CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAG
* *
82225446 ATCAAAGACACAA
66 ATCGAAGACATAA
*
82225459 CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGTAG
1 CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAG
82225524 ATCGAAGACATAA
66 ATCGAAGACATAA
* * *
82225537 CAGAT-TGGACCTTCATTGAAGCAGATCGAAGATGATTTGGCATCTCTGTATTAGATGGGGAACA
1 CAGATCT-GACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCA
*
82225601 GATCGAAGACATAG
65 GATCGAAGACATAA
*
82225615 CAGATCTAACCTTCA
1 CAGATCTGACCTTCA
82225630 CGTGTTTACG
Statistics
Matches: 159, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
77 1 0.01
78 157 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (78 bp):
CAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAG
ATCGAAGACATAA
Found at i:82225790 original size:78 final size:78
Alignment explanation
Indices: 82225700--82225994 Score: 421
Period size: 78 Copynumber: 3.8 Consensus size: 78
82225690 TCGAAGAAAT
** * * *
82225700 AGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGA
* *
82225765 AGCAGGTCTAAGA
66 AGCAGATCCAAGA
* * *
82225778 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAACAGATTTGACCTTCATTAA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGA
82225843 AGCAGATCCAAGA
66 AGCAGATCCAAGA
* * *
82225856 TGATTTGGCATATCTGTATTAGACAGGGAGCAGATCGAAGACATAACAGAT-TAGACCTTCATTG
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTG
*
82225920 AAGTAGATCCAAGA
65 AAGCAGATCCAAGA
* * *
82225934 TGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCA
1 AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCA
82225995 CGTGTTTACG
Statistics
Matches: 195, Mismatches: 20, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 193 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
AGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGA
AGCAGATCCAAGA
Found at i:82226049 original size:365 final size:365
Alignment explanation
Indices: 82225379--82226449 Score: 1748
Period size: 365 Copynumber: 2.9 Consensus size: 365
82225369 TTCGACGGAG
82225379 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGC
1 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGC
* *
82225444 AGATCAAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTA
66 AGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATATCTGTA
* * *
82225509 TTAGACGGGGAGTAGATCGAAGACATAACAGATTGGACCTTCATTGAAGCAGATCGAAGATGATT
131 TTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATT
* *
82225574 TGGCATCTCTGTATTAGATGGGGAACAGATCGAAGACATAGCAGATCTAACCTTCACGTGTTTAC
196 TGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCACGTGTTTAC
*
82225639 GCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAATAGAT
261 GCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGAT
82225704 TTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
326 TTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
* * * *
82225744 AGCAGATCTGACCTTCATTGAAGCAGGTCTAAGAAGATTTGGCATCTCTGTATTAGACGGGGAGC
1 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGC
* *
82225809 AGATCGAAGACACAACAGATTTGACCTTCATTAAAGCAGATCCAAGATGATTTGGCATATCTGTA
66 AGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATATCTGTA
* * *
82225874 TTAGACAGGGAGCAGATCGAAGACATAACAGATTAGACCTTCATTGAAGTAGATCCAAGATGATT
131 TTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATT
82225939 TGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCACGTGTTTAC
196 TGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCACGTGTTTAC
82226004 GCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGAT
261 GCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGAT
82226069 TTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
326 TTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
*
82226109 AGCAGATCTGACCTTCATTAAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGC
1 AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGC
* *
82226174 AGATCGAAGACACAACAGATCTGACCTTTATTGAAGCAGATCCAAGATGATTTGGCATATTTGTA
66 AGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATATCTGTA
* * *
82226239 TTAGACGGGGAGCAAATCAAAGACATAACAGATTGGACCTTTATTGAAGAAGATCCAAGATGATT
131 TTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATT
* * *
82226304 TGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGTTTAC
196 TGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCACGTGTTTAC
* * * * * * * * * *
82226369 -ATCGAAGTAGATCCAAGGTGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGAT
261 GCT-GAAGCAGATCTAA---GA-TGATTTGGCATCTCTGTACT-GTCAGAGAACAAATCGAAGA-
82226433 AACAGATTTGGCATCTC
319 AACAGATTTGGCATCTC
82226450 AGTATTAGAC
Statistics
Matches: 655, Mismatches: 44, Indels: 8
0.93 0.06 0.01
Matches are distributed among these distances:
364 1 0.00
365 602 0.92
368 2 0.00
369 18 0.03
370 15 0.02
371 17 0.03
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (365 bp):
AGCAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGAGAGC
AGATCGAAGACACAACAGATCTGACCTTCATTGAAGCAGATCCAAGATGATTTGGCATATCTGTA
TTAGACGGGGAGCAGATCGAAGACATAACAGATTGGACCTTCATTGAAGAAGATCCAAGATGATT
TGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCACGTGTTTAC
GCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGAT
TTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACAT
Found at i:82226170 original size:78 final size:78
Alignment explanation
Indices: 82226066--82226360 Score: 421
Period size: 78 Copynumber: 3.8 Consensus size: 78
82226056 CGAAGAAACA
** * * *
82226066 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTAAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
82226131 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
82226144 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACACAACAGATCTGACCTTTATTGAA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
82226209 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * * *
82226222 GATTTGGCATATTTGTATTAGACGGGGAGCAAATCAAAGACATAACAGAT-TGGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
*
82226286 AGAAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
82226300 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCAT
82226361 GTGTTTACAT
Statistics
Matches: 196, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
77 1 0.01
78 194 0.99
79 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGAGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:82226514 original size:44 final size:45
Alignment explanation
Indices: 82226300--82226573 Score: 205
Period size: 45 Copynumber: 6.1 Consensus size: 45
82226290 GATCCAAGAT
* *
82226300 GATTTGGCATCTTTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * * * *
82226347 GATCTGACCT-TCATGTGTTTACATC--GAAGTAGATCCAAGGTGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
82226392 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* ** * * **
82226437 GATTTGGCATCTCAGTATTAGACAAGGAACAGATTGAAGA-AGTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
** *
82226481 GATTTTTCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* ** * * *
82226526 GATTTGGCCTCAATGTATTAGACGGGGAGCAAATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
82226571 GAT
1 GAT
82226574 ATCGCCTTTC
Statistics
Matches: 169, Mismatches: 51, Indels: 16
0.72 0.22 0.07
Matches are distributed among these distances:
43 1 0.01
44 38 0.22
45 101 0.60
46 3 0.02
47 21 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:82226938 original size:18 final size:19
Alignment explanation
Indices: 82226915--82226960 Score: 85
Period size: 18 Copynumber: 2.5 Consensus size: 19
82226905 ATGGAAATAT
82226915 AATCTTAGATATGAT-TGC
1 AATCTTAGATATGATATGC
82226933 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGC
82226952 AATCTTAGA
1 AATCTTAGA
82226961 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 15 0.56
19 12 0.44
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (19 bp):
AATCTTAGATATGATATGC
Found at i:82226986 original size:22 final size:22
Alignment explanation
Indices: 82226921--82226983 Score: 71
Period size: 23 Copynumber: 3.0 Consensus size: 22
82226911 ATATAATCTT
82226921 AGATATGAT-TGCAATCTT---
1 AGATATGATATGCAATCTTAGA
82226939 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATCTTAGA
* *
82226961 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGCAATCTTAGA
82226984 GATTTAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
18 9 0.24
19 9 0.24
22 8 0.21
23 12 0.32
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATCTTAGA
Found at i:82227199 original size:18 final size:20
Alignment explanation
Indices: 82227159--82227200 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
82227149 TCCCTCTTAC
*
82227159 GTTCTTATTTTATATGGTTT
1 GTTCTTATTTTATATGCTTT
82227179 GTTCTTATTTTAT-T-CTTT
1 GTTCTTATTTTATATGCTTT
82227197 GTTC
1 GTTC
82227201 ATCTTCGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 13 0.62
ACGTcount: A:0.12, C:0.10, G:0.12, T:0.67
Consensus pattern (20 bp):
GTTCTTATTTTATATGCTTT
Found at i:82227273 original size:17 final size:17
Alignment explanation
Indices: 82227249--82227283 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
82227239 ATGTTTCCGG
*
82227249 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
82227267 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
82227284 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:82230056 original size:29 final size:29
Alignment explanation
Indices: 82230024--82230080 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
82230014 AAAATTAACC
*
82230024 TAATCTCATAATT-TTTCGAAAAAATGACT
1 TAATCTCATAATTCTTT-AAAAAAATGACT
* *
82230053 TAATTTGATAATTCTTTAAAAAAATGAC
1 TAATCTCATAATTCTTTAAAAAAATGAC
82230081 ATTTTTAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 21 0.88
30 3 0.12
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.39
Consensus pattern (29 bp):
TAATCTCATAATTCTTTAAAAAAATGACT
Found at i:82231800 original size:60 final size:59
Alignment explanation
Indices: 82231732--82231977 Score: 282
Period size: 60 Copynumber: 4.1 Consensus size: 59
82231722 CGTAAGTTTG
*
82231732 CTTTAAAGAAGCAAATTACCTTGAATAAGTAAAATCACTTTAAAGAAGTGTGCAAGTTCA
1 CTTTAAAGAAGCAAATTACCTT-AATAAGTAAAACCACTTTAAAGAAGTGTGCAAGTTCA
* * * *
82231792 CTTTAAAGAAGCAAGTTACCTTAAATAGGTAAAGCCACTTTAAAGAAGTGTGCAAGTAT-G
1 CTTTAAAGAAGCAAATTACCTT-AATAAGTAAAACCACTTTAAAGAAGTGTGCAAGT-TCA
* * **
82231852 TTTTAAATAAGCAAATTACCTT-A-AAGTGACTACCACTTTAAAGAAGTGTGCAAGTTCA
1 CTTTAAAGAAGCAAATTACCTTAATAAGT-AAAACCACTTTAAAGAAGTGTGCAAGTTCA
* * * * * * *
82231910 CTTTAAAGAAGCAAATTACATTCAAGAGGTAAAGCCACTTCAAAAAAGTGTACAAGTTCA
1 CTTTAAAGAAGCAAATTACCTT-AATAAGTAAAACCACTTTAAAGAAGTGTGCAAGTTCA
82231970 CTTTAAAG
1 CTTTAAAG
82231978 TAGTAAGTTG
Statistics
Matches: 156, Mismatches: 24, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
57 4 0.03
58 44 0.28
60 104 0.67
61 4 0.03
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.28
Consensus pattern (59 bp):
CTTTAAAGAAGCAAATTACCTTAATAAGTAAAACCACTTTAAAGAAGTGTGCAAGTTCA
Found at i:82231975 original size:118 final size:119
Alignment explanation
Indices: 82231732--82231977 Score: 327
Period size: 118 Copynumber: 2.1 Consensus size: 119
82231722 CGTAAGTTTG
*
82231732 CTTTAAAGAAGCAAATTACCTTGAATAAGTAAAATCACTTTAAAGAAGTGTGCAAGTTCACTTTA
1 CTTTAAAGAAGCAAATTACCTT-AATAAGTAAAACCACTTTAAAGAAGTGTGCAAGTTCACTTTA
* * * * * * *
82231797 AAGAAGCAAGTTACCTTAAATAGGTAAAGCCACTTTAAAGAAGTGTGCAAGTATG
65 AAGAAGCAAATTACATTAAAGAGGTAAAGCCACTTCAAAAAAGTGTACAAGTATA
* * **
82231852 TTTTAAATAAGCAAATTACCTT-A-AAGTGACTACCACTTTAAAGAAGTGTGCAAGTTCACTTTA
1 CTTTAAAGAAGCAAATTACCTTAATAAGT-AAAACCACTTTAAAGAAGTGTGCAAGTTCACTTTA
*
82231915 AAGAAGCAAATTACATTCAAGAGGTAAAGCCACTTCAAAAAAGTGTACAAGT-TCA
65 AAGAAGCAAATTACATTAAAGAGGTAAAGCCACTTCAAAAAAGTGTACAAGTAT-A
82231970 CTTTAAAG
1 CTTTAAAG
82231978 TAGTAAGTTG
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
117 5 0.05
118 84 0.77
120 20 0.18
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.28
Consensus pattern (119 bp):
CTTTAAAGAAGCAAATTACCTTAATAAGTAAAACCACTTTAAAGAAGTGTGCAAGTTCACTTTAA
AGAAGCAAATTACATTAAAGAGGTAAAGCCACTTCAAAAAAGTGTACAAGTATA
Found at i:82233908 original size:23 final size:23
Alignment explanation
Indices: 82233882--82233926 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
82233872 TACTTGTGTG
82233882 CAAGTGACAATGACACTTCGGTA
1 CAAGTGACAATGACACTTCGGTA
* * *
82233905 CAAGTGATAGTGGCACTTCGGT
1 CAAGTGACAATGACACTTCGGT
82233927 GTAAATTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (23 bp):
CAAGTGACAATGACACTTCGGTA
Found at i:82244445 original size:27 final size:27
Alignment explanation
Indices: 82244405--82244510 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
82244395 ATGGTGACTT
* *
82244405 AAATATCCCTATAGGGTAAAATAACCG
1 AAATACCCCCATAGGGTAAAATAACCG
* *
82244432 AAATACCCCCATAGGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATAACCG
* *
82244459 AAATACCCCCATAGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATAACCG
** *
82244486 AAATACCCTTATAAGGTAAAATAAC
1 AAATACCCCCATAGGGTAAAATAAC
82244511 TATAATACTC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.46, C:0.22, G:0.13, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATAACCG
Found at i:82244578 original size:26 final size:27
Alignment explanation
Indices: 82244406--82244587 Score: 123
Period size: 27 Copynumber: 6.8 Consensus size: 27
82244396 TGGTGACTTA
* * * *
82244406 AATATCCCTATAGGGTAAAATAACCGA
1 AATACCCCTGTAGGGTAAAATAACTGT
** * * * *
82244433 AATACCCCCATAGGATAAAATGACCGA
1 AATACCCCTGTAGGGTAAAATAACTGT
** * ***
82244460 AATACCCCCATAGGGTAAAATGACCAA
1 AATACCCCTGTAGGGTAAAATAACTGT
* * * *
82244487 AATACCCTTATAAGGTAAAATAACTAT
1 AATACCCCTGTAGGGTAAAATAACTGT
* * *
82244514 AATACTCCTGTAGGATAAAATAATTGT
1 AATACCCCTGTAGGGTAAAATAACTGT
* *
82244541 AATACCCTTGTAGGGTAAAA-GACTGT
1 AATACCCCTGTAGGGTAAAATAACTGT
*
82244567 AATACCCCTGTAAGGTAAAAT
1 AATACCCCTGTAGGGTAAAAT
82244588 GATTGATTTG
Statistics
Matches: 128, Mismatches: 26, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
26 22 0.17
27 106 0.83
ACGTcount: A:0.43, C:0.19, G:0.15, T:0.24
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATAACTGT
Found at i:82246147 original size:29 final size:24
Alignment explanation
Indices: 82246092--82246142 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
82246082 AACACATAGC
82246092 AAACATTTTTAGATTAAATTAAAG
1 AAACATTTTTAGATTAAATTAAAG
82246116 AAACATTTTTAGATTAAATTAAAG
1 AAACATTTTTAGATTAAATTAAAG
82246140 AAA
1 AAA
82246143 GGAAAGATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.35
Consensus pattern (24 bp):
AAACATTTTTAGATTAAATTAAAG
Found at i:82252029 original size:40 final size:39
Alignment explanation
Indices: 82251828--82252029 Score: 196
Period size: 39 Copynumber: 5.1 Consensus size: 39
82251818 CGGAATTTAA
** *
82251828 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAA-GCCTTCGGGACTTAGC
* * *
82251868 CCGGTTATAGTAACTCGCACAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
* *
82251907 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCA-CAAAGCCTTCGGGACTTAGC
* * *
82251946 CCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAA-GCCTTCGGGA-CTTAGC
* * *
82251985 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGC
82252025 CCGGA
1 CCGGA
82252030 CATCATTCGA
Statistics
Matches: 135, Mismatches: 19, Indels: 16
0.79 0.11 0.09
Matches are distributed among these distances:
37 5 0.04
38 17 0.13
39 52 0.39
40 50 0.37
41 11 0.08
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
Found at i:82259878 original size:39 final size:39
Alignment explanation
Indices: 82259814--82260016 Score: 193
Period size: 39 Copynumber: 5.1 Consensus size: 39
82259804 CGGAATTTAA
*
82259814 CCGGATATAGCT-ACTCGTTCA-AATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCG--CACAATGCCTTCGGGACTTAGC
* *
82259854 CCGG-TCATAGTAACTCGCACAATGCCTTCGAGACTTAAC
1 CCGGAT-ATAGTAACTCGCACAATGCCTTCGGGACTTAGC
*
82259893 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCA-CAATGCCTTCGGGACTTAGC
* *
82259932 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGA-CTTAGC
* * * *
82259972 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGC
82260012 CCGGA
1 CCGGA
82260017 CATCATTCGA
Statistics
Matches: 136, Mismatches: 15, Indels: 24
0.78 0.09 0.14
Matches are distributed among these distances:
38 5 0.04
39 64 0.47
40 58 0.43
41 9 0.07
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGC
Found at i:82259957 original size:79 final size:78
Alignment explanation
Indices: 82259835--82260016 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 78
82259825 TACTCGTTCA
* *
82259835 AATGCCTTCGGGACATAGCCCGGTCATAGTAACTCGCACAATGCCTTCGAGA-CTTAACCCGGAT
1 AATGCCTTCGGGACTTAGCCCGG-AATAGTAACTCGCACAATGCCTTCG-GATCTTAACCCGGAT
* *
82259899 TTAGTAAC-TCGCACC
64 ATAGTAACTTAGCA-C
* **
82259914 AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCGGAT
* *
82259978 ATGGTCACTTAGCAC
64 ATAGTAACTTAGCAC
*
82259993 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82260017 CATCATTCGA
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
77 1 0.01
78 23 0.26
79 49 0.56
80 15 0.17
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (78 bp):
AATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGGATAT
AGTAACTTAGCAC
Found at i:82261956 original size:194 final size:194
Alignment explanation
Indices: 82261654--82263787 Score: 3501
Period size: 194 Copynumber: 11.0 Consensus size: 194
82261644 GTCACACTTA
* *
82261654 GGGCATTGAAACCATGTTATATGCACATGTACCATCACCATCAAAGAAGCTTAATTCATTTTACG
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
*
82261719 AACAGTGACTCCACTATACCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* * *
82261784 AAGACTACCTAAGAAAATTATTAGCAACTTATTATT-AAGGGTCATAAGACAAGTTTCAATCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAA-GGTCATAAGACAAGTTTGAGTCTTG
* *
82261848 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAAAACCTTAATTCATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
* * *
82261913 AACAGTAACTCCACTATAGCGATCCCAACTAGCTCACATGTAACTTGACTTGTTTCCACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* *
82261978 AACG-CTGCCTAAGGAAATTATTAGCAACTTATTATTGAAGGTCATAGGACAAGTTTGAGTCTTG
131 AA-GACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
* * *
82262042 GGGCATTGAAGCCATGTTACATGCACATGTATCATCAACATCAAAGAAGCTTAATTCATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
*
82262107 AACTGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* *
82262172 AACG-CTGCCTAAGGAAATTATTAGCAACTTATTATTGAAGGTCATAGGACAAGTTTGAGTCTTG
131 AA-GACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
*
82262236 GGGCATTGAAACCATGTTACATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
** * *
82262301 AATTGTGACTCCACTATACCGAGCCCAACTAGCTCACATGTAACTTGACTCGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
82262366 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
* *
82262430 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAACCTTAATTCATTTTACC
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
*
82262495 AATAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* * *
82262560 AAGACTGCCAAAGAAAATTATTAGCAGCTTATTATTGAAGGTCATAAGAAAAGTTTGA-TCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
* *
82262623 GGGAATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAACTCATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
* * *
82262688 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATATAGCTTGACTTGTTTACACCTCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
** *
82262753 AAGGTTGCGTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
*
82262817 GGGCATTGAAACCATGTTATATGCACCA-GTATCATCACCATCAAAGAACCTTAATTCATTTTAC
1 GGGCATTGAAACCATGTTATATGCA-CATGTATCATCACCATCAAAGAAGCTTAATTCATTTTAC
* *
82262881 AAACAGTGA-TTCACTATAGCGAGCCCAACTAGCTCTCATGTAACTTGACTTGTTTACACCCCTA
65 AAACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTA
* *
82262945 GAACACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTC
130 GAAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
* * * *
82263010 GGGCATTTAAACCATGTTATATGCACATGTACCATCACTATCAAAGAAGCTTAATTAATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
82263075 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* * *
82263140 AAGACTGCTTAAG-AAATTATTAGCAACTTAGTATTAAAGGTCATAAGACAAGTTTGAGTCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
*
82263203 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAACCTTAATTCATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
* *
82263268 AACAGTAACTCCACTATAGCGAGACCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* * * *
82263333 AAGGCTGCCTAAGGAAATTATTAGCAACCTATTATTGAAGGTCATAGGACAAGTTTGAGTCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
* *
82263397 CGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTGAATTCATTTTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
* * * *
82263462 AACCGTGACTCTACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACGCCCCTGG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
* * * *
82263527 AAGTCAT-CCTAAAAAAATTATTAACAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTA
131 AAGAC-TGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
* * * *
82263591 GGGCGTTGAAACCATGATATATGCACAAGTATCATCACCATCAAAGAAGCTTAATTCATTCTACA
1 GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
* *
82263656 AACAGTGACTCCACTATAGCAAGCCCAACTAGCTCACATGTAACCTGACTTGTTTACACCCCTAG
66 AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
*
82263721 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGAAAAGTTTGAGTCTTG
131 AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
82263785 GGG
1 GGG
82263788 TATAACACCC
Statistics
Matches: 1807, Mismatches: 123, Indels: 20
0.93 0.06 0.01
Matches are distributed among these distances:
192 2 0.00
193 537 0.30
194 1262 0.70
195 6 0.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (194 bp):
GGGCATTGAAACCATGTTATATGCACATGTATCATCACCATCAAAGAAGCTTAATTCATTTTACA
AACAGTGACTCCACTATAGCGAGCCCAACTAGCTCACATGTAACTTGACTTGTTTACACCCCTAG
AAGACTGCCTAAGAAAATTATTAGCAACTTATTATTGAAGGTCATAAGACAAGTTTGAGTCTTG
Found at i:82276255 original size:79 final size:81
Alignment explanation
Indices: 82276146--82276328 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
82276136 TACTCGTTCA
* *
82276146 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
82276209 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
82276226 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
82276289 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
82276305 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
82276329 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:82276328 original size:40 final size:40
Alignment explanation
Indices: 82276125--82276328 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
82276115 CAGAATTTAA
** *
82276125 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82276165 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82276205 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
82276244 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
82276284 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
82276324 CCGGA
1 CCGGA
82276329 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:82285000 original size:56 final size:56
Alignment explanation
Indices: 82284939--82285072 Score: 202
Period size: 54 Copynumber: 2.4 Consensus size: 56
82284929 ACCATGGCTT
*
82284939 CGATATATGTGTGCGAGTAAGACC-TCGTTTTATATGTTGGCATCAATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCAT-GTTTTATACGTTGGCATCAATATGTGACTC
* *
82284995 CGATATA--TGTGCGAGTAAGTCCATGTTTTATACGTTGGCATCGATATGTGACTC
1 CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCAATATGTGACTC
*
82285049 TGATATATGTGTGCGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
82285073 CTGTCTGGGA
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
54 48 0.69
55 1 0.01
56 21 0.30
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCATGTTTTATACGTTGGCATCAATATGTGACTC
Found at i:82285738 original size:89 final size:89
Alignment explanation
Indices: 82285633--82285812 Score: 360
Period size: 89 Copynumber: 2.0 Consensus size: 89
82285623 CTAAATGTGA
82285633 TAATGATATTATAATTTGATTTAGTTTAATTGAGATGAATATATCATTGGTTTGTTTATTTGCTT
1 TAATGATATTATAATTTGATTTAGTTTAATTGAGATGAATATATCATTGGTTTGTTTATTTGCTT
82285698 ATGACTTACTAAGCTATAAAAGCT
66 ATGACTTACTAAGCTATAAAAGCT
82285722 TAATGATATTATAATTTGATTTAGTTTAATTGAGATGAATATATCATTGGTTTGTTTATTTGCTT
1 TAATGATATTATAATTTGATTTAGTTTAATTGAGATGAATATATCATTGGTTTGTTTATTTGCTT
82285787 ATGACTTACTAAGCTATAAAAGCT
66 ATGACTTACTAAGCTATAAAAGCT
82285811 TA
1 TA
82285813 CTCTGTATGT
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 91 1.00
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.46
Consensus pattern (89 bp):
TAATGATATTATAATTTGATTTAGTTTAATTGAGATGAATATATCATTGGTTTGTTTATTTGCTT
ATGACTTACTAAGCTATAAAAGCT
Found at i:82287450 original size:79 final size:79
Alignment explanation
Indices: 82287339--82287561 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 79
82287329 GCTACTCGTT
* * *
82287339 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
82287404 ATTTAGTAACTCGCA
65 AATTAGTAACTCACA
* *
82287419 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCC-A
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
82287481 AATTAGTATCTCACA
65 AATTAGTAACTCACA
* * * * *
82287496 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
82287560 GA
64 GA
82287562 CATCATTCAA
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
77 25 0.20
78 31 0.25
79 51 0.42
80 15 0.12
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCACA
Found at i:82287456 original size:39 final size:40
Alignment explanation
Indices: 82287339--82287561 Score: 253
Period size: 40 Copynumber: 5.7 Consensus size: 40
82287329 GCTACTCGTT
* *
82287339 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
82287379 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
82287419 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
82287458 CAAATGCCTTCGGG-CTTAGCCC-AAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
82287496 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
82287537 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
82287562 CATCATTCAA
Statistics
Matches: 160, Mismatches: 15, Indels: 15
0.84 0.08 0.08
Matches are distributed among these distances:
37 2 0.01
38 25 0.16
39 53 0.33
40 68 0.43
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:82301459 original size:47 final size:47
Alignment explanation
Indices: 82301400--82301725 Score: 562
Period size: 47 Copynumber: 6.9 Consensus size: 47
82301390 TAGTATGGAG
*
82301400 TAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
82301447 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
82301494 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
82301541 TAATGGCCGATGTGATGAATATGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
82301588 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
82301635 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
82301682 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
82301726 TCCCGAAGGG
Statistics
Matches: 266, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 266 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:82301900 original size:37 final size:37
Alignment explanation
Indices: 82301844--82301922 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
82301834 CCGAGCTCTA
* * * *
82301844 AAGACCTGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
82301881 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
82301918 AAGAC
1 AAGAC
82301923 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:82308359 original size:42 final size:42
Alignment explanation
Indices: 82308269--82308350 Score: 112
Period size: 42 Copynumber: 2.0 Consensus size: 42
82308259 TGCCACACAA
82308269 GCGTGTGGTCGCCCGTATGGTAGGCGATGTGCCCTAACACTG
1 GCGTGTGGTCGCCCGTATGGTAGGCGATGTGCCCTAACACTG
* * * *
82308311 GCGTGTGGTTGCCCTTGTGGTAGGTC-ATGTGCCTTAACAC
1 GCGTGTGGTCGCCCGTATGGTAGG-CGATGTGCCCTAACAC
82308351 GAGTGTGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 34 0.97
43 1 0.03
ACGTcount: A:0.13, C:0.24, G:0.34, T:0.28
Consensus pattern (42 bp):
GCGTGTGGTCGCCCGTATGGTAGGCGATGTGCCCTAACACTG
Found at i:82314946 original size:45 final size:45
Alignment explanation
Indices: 82314889--82315043 Score: 195
Period size: 45 Copynumber: 3.4 Consensus size: 45
82314879 GACTCACCAT
* * * * *
82314889 AGCTCGTCTGAGCTTACTGTTCAGCTCGATAGATCTCACCACTTC
1 AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCATTTC
* * * *
82314934 AGCTCGTATGAGCTTACTATTTTGCTCGATAGAGCTTACCGTTTT
1 AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCATTTC
*
82314979 AGCTCGTATGAGCTTATTGTTTAGCTCGATAGAGCTTACCATTTC
1 AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCATTTC
*
82315024 AGCTC-AATAGAGCTTACTGT
1 AGCTCGTAT-GAGCTTACTGT
82315044 CCATCAGCTC
Statistics
Matches: 93, Mismatches: 16, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 2 0.02
45 91 0.98
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.35
Consensus pattern (45 bp):
AGCTCGTATGAGCTTACTGTTTAGCTCGATAGAGCTTACCATTTC
Found at i:82314991 original size:23 final size:23
Alignment explanation
Indices: 82314911--82315040 Score: 117
Period size: 23 Copynumber: 5.7 Consensus size: 23
82314901 CTTACTGTTC
* * * *
82314911 AGCTCGATAGATCTCACCACTTC
1 AGCTCGATAGAGCTTACCATTTT
*
82314934 AGCTCG-TATGAGCTTACTATTTT
1 AGCTCGATA-GAGCTTACCATTTT
*
82314957 -GCTCGATAGAGCTTACCGTTTT
1 AGCTCGATAGAGCTTACCATTTT
*
82314979 AGCTCG-TATGAGCTTA--TTGTTT
1 AGCTCGATA-GAGCTTACCAT-TTT
*
82315001 AGCTCGATAGAGCTTACCATTTC
1 AGCTCGATAGAGCTTACCATTTT
*
82315024 AGCTCAATAGAGCTTAC
1 AGCTCGATAGAGCTTAC
82315041 TGTCCATCAG
Statistics
Matches: 88, Mismatches: 11, Indels: 16
0.77 0.10 0.14
Matches are distributed among these distances:
21 1 0.01
22 37 0.42
23 49 0.56
24 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.18, T:0.35
Consensus pattern (23 bp):
AGCTCGATAGAGCTTACCATTTT
Found at i:82319523 original size:31 final size:31
Alignment explanation
Indices: 82319488--82319550 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
82319478 CATTAATTTA
* * *
82319488 TTAAACACTTACTTAGTTTTAATAACGAATT
1 TTAAACAATTACTTAATTCTAATAACGAATT
82319519 TTAAACAATTACTTAATTCTAATAACGAATT
1 TTAAACAATTACTTAATTCTAATAACGAATT
82319550 T
1 T
82319551 AAGTAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (31 bp):
TTAAACAATTACTTAATTCTAATAACGAATT
Found at i:82322365 original size:31 final size:31
Alignment explanation
Indices: 82322330--82322392 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
82322320 ACATTTGGCC
82322330 ATATCATAATGACACATACACAAAATGACTA
1 ATATCATAATGACACATACACAAAATGACTA
**
82322361 ATATCATAATGACATTTACACAAAATGACTA
1 ATATCATAATGACACATACACAAAATGACTA
82322392 A
1 A
82322393 GTCCCTATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.25
Consensus pattern (31 bp):
ATATCATAATGACACATACACAAAATGACTA
Found at i:82323593 original size:25 final size:25
Alignment explanation
Indices: 82323565--82323613 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
82323555 CCAAACGACC
* *
82323565 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
82323590 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
82323614 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:82323626 original size:12 final size:12
Alignment explanation
Indices: 82323606--82323640 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
82323596 ATAATTCTTC
*
82323606 ATAATGATAATA
1 ATAAAGATAATA
82323618 ATAAAGATAATA
1 ATAAAGATAATA
82323630 ATAAAGATAAT
1 ATAAAGATAAT
82323641 CACATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.29
Consensus pattern (12 bp):
ATAAAGATAATA
Found at i:82326093 original size:15 final size:16
Alignment explanation
Indices: 82326062--82326098 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
82326052 CAACCAAAAA
82326062 AAACCGAGGAACTTGC
1 AAACCGAGGAACTTGC
*
82326078 AAACCGAGG-GCTTGC
1 AAACCGAGGAACTTGC
82326093 AAACCG
1 AAACCG
82326099 GTTGATAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.35, C:0.27, G:0.27, T:0.11
Consensus pattern (16 bp):
AAACCGAGGAACTTGC
Found at i:82337180 original size:26 final size:26
Alignment explanation
Indices: 82337151--82337258 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
82337141 TGATACAAAT
*
82337151 TGATAATGGGTTTGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
82337177 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
82337203 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82337229 TGATAATGGTTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82337255 TGAT
1 TGAT
82337259 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82338920 original size:27 final size:27
Alignment explanation
Indices: 82338880--82339010 Score: 185
Period size: 27 Copynumber: 4.9 Consensus size: 27
82338870 AGGAAGCGTC
* *
82338880 CTGGTGGCTATGCCACATTTATCTGAT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
82338907 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
* *
82338934 CTGGTGGCTATGGCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
82338961 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
82338988 CTGGTGGCTCTGCCACA-ATATCT
1 CTGGTGGCTCTGCCACATATATCT
82339011 ATATATGGTG
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.09
27 83 0.89
28 2 0.02
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:82339020 original size:54 final size:53
Alignment explanation
Indices: 82338880--82339010 Score: 217
Period size: 54 Copynumber: 2.4 Consensus size: 53
82338870 AGGAAGCGTC
82338880 CTGGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACA-TTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
82338934 CTGGTGGCTATGGCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
82338988 CTGGTGGCTCTGCCACAATATCT
1 CTGGTGGCTATGCCACATTATCT
82339011 ATATATGGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
53 6 0.08
54 65 0.90
55 1 0.01
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:82345284 original size:26 final size:26
Alignment explanation
Indices: 82345255--82345362 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
82345245 TGGTACAAAT
82345255 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
82345281 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
82345307 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82345333 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82345359 TGAT
1 TGAT
82345363 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82347021 original size:27 final size:27
Alignment explanation
Indices: 82346981--82347084 Score: 167
Period size: 27 Copynumber: 3.9 Consensus size: 27
82346971 AGGAAGCGTC
* *
82346981 CTGGTGGCTATGCCACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGTT
82347008 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
82347035 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGTT
82347062 CTGGTGGCTCTGCCACA-ATATCT
1 CTGGTGGCTCTGCCACATATATCT
82347085 ATATATGGTG
Statistics
Matches: 74, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
26 6 0.08
27 67 0.91
28 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGTT
Found at i:82350213 original size:22 final size:22
Alignment explanation
Indices: 82350195--82350241 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
82350185 AAGTTTCGGT
82350195 AACTCCGAAACCCTATTTCGAC
1 AACTCCGAAACCCTATTTCGAC
* *
82350217 AACTCTGAAACCCTGTTTCGAC
1 AACTCCGAAACCCTATTTCGAC
82350239 AAC
1 AAC
82350242 GGATACGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.32, C:0.34, G:0.11, T:0.23
Consensus pattern (22 bp):
AACTCCGAAACCCTATTTCGAC
Found at i:82352216 original size:27 final size:26
Alignment explanation
Indices: 82352172--82352223 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
82352162 CTCGCTGCAA
*
82352172 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
82352199 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
82352224 GCAGCCTAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:82359749 original size:33 final size:32
Alignment explanation
Indices: 82359700--82359763 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
82359690 CTAGCTTCAA
* *
82359700 TCTGGTGGCTTCGCCACATATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
82359733 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
82359764 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:82359777 original size:27 final size:26
Alignment explanation
Indices: 82359725--82359784 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
82359715 ACATATATAT
*
82359725 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
82359751 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
82359778 ATATCTG
1 ATATCTG
82359785 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:82361285 original size:31 final size:31
Alignment explanation
Indices: 82361240--82361354 Score: 187
Period size: 31 Copynumber: 3.7 Consensus size: 31
82361230 TTAGTCTTGA
*
82361240 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
82361270 CATATCATTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
82361301 CATATCACTGGGCCGAAGCATTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
82361332 CATATCACTAGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
82361355 ACTGTAAACG
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
30 5 0.06
31 73 0.94
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:82361425 original size:42 final size:42
Alignment explanation
Indices: 82361378--82361469 Score: 166
Period size: 42 Copynumber: 2.2 Consensus size: 42
82361368 TGGCCCTTAG
*
82361378 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
*
82361420 GCCCATTTTAATATCACATGTAATGTCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
82361462 GCCCATTT
1 GCCCATTT
82361470 GGAAAGACTA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.33
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGTAATGTCAATGAATGTATGCAA
Found at i:82361645 original size:25 final size:25
Alignment explanation
Indices: 82361617--82361686 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
82361607 CTCTTTTAAT
82361617 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
*
82361642 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
82361667 AACTGGGGCACAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
82361687 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
25 38 0.90
26 4 0.10
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:82362526 original size:27 final size:27
Alignment explanation
Indices: 82362484--82362560 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
82362474 TACGGAACAT
82362484 AAGGGCATATT-C-GTCATTTTACCATA
1 AAGGG-ATATTACGGTCATTTTACCATA
* *
82362510 CAAGGG-TATTACGGTCACTTTACCCTA
1 -AAGGGATATTACGGTCATTTTACCATA
* * *
82362537 TAGGGATTTTACGGTCTTTTTACC
1 AAGGGATATTACGGTCATTTTACC
82362561 TATTAGGGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
25 4 0.10
26 5 0.12
27 32 0.78
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (27 bp):
AAGGGATATTACGGTCATTTTACCATA
Found at i:82362635 original size:27 final size:27
Alignment explanation
Indices: 82362605--82362656 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
82362595 GGGTGTTTTG
82362605 GTAATTCTAG-AAACCAAGGGTATTTCA
1 GTAATT-TAGTAAACCAAGGGTATTTCA
* *
82362632 GTAATTTTGTAAACCAATGGTATTT
1 GTAATTTAGTAAACCAAGGGTATTT
82362657 TTAAAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.09
27 20 0.91
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.37
Consensus pattern (27 bp):
GTAATTTAGTAAACCAAGGGTATTTCA
Found at i:82362719 original size:27 final size:26
Alignment explanation
Indices: 82362702--82362856 Score: 148
Period size: 27 Copynumber: 5.8 Consensus size: 26
82362692 TTTTGTAAAT
82362702 CAGAGGTATTTTGGTAATTTTACAAA
1 CAGAGGTATTTTGGTAATTTTACAAA
** * *
82362728 TTGAGGGTATTTCGGTAATTTCACAAA
1 CAGA-GGTATTTTGGTAATTTTACAAA
* *
82362755 CCAGTGGTATTTCGGTAATTTTACAAA
1 -CAGAGGTATTTTGGTAATTTTACAAA
*
82362782 CTAGGGGTATTTTGGTAATTTTACAAA
1 C-AGAGGTATTTTGGTAATTTTACAAA
* * **
82362809 CTAGGGGTATTTTGGTAATTCTATCCTA
1 C-AGAGGTATTTTGGTAATTTTA-CAAA
* *
82362837 CAGGGGTATTTTAGTAATTT
1 CAGAGGTATTTTGGTAATTT
82362857 CATAATGAGG
Statistics
Matches: 110, Mismatches: 15, Indels: 7
0.83 0.11 0.05
Matches are distributed among these distances:
26 3 0.03
27 103 0.94
28 4 0.04
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (26 bp):
CAGAGGTATTTTGGTAATTTTACAAA
Found at i:82362764 original size:54 final size:54
Alignment explanation
Indices: 82362706--82362828 Score: 176
Period size: 54 Copynumber: 2.3 Consensus size: 54
82362696 GTAAATCAGA
* *
82362706 GGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGGTAATTTCACAAACCAGG
* * * *
82362760 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAGG
82362814 GGTATTTTGGTAATT
1 GGTATTTTGGTAATT
82362829 CTATCCTACA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 59 0.97
55 2 0.03
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (54 bp):
GGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGTAATTTCACAAACCAGG
Found at i:82362842 original size:54 final size:54
Alignment explanation
Indices: 82362706--82362858 Score: 166
Period size: 54 Copynumber: 2.8 Consensus size: 54
82362696 GTAAATCAGA
* * * * *
82362706 GGTATTTTGGTAATTTTACAAA-TTGAGGGTATTTCGGTAATTTCACAAACCAGT
1 GGTATTTCGGTAATTCTACAAACTAG-GGGTATTTTGGTAATTTCACAAACCAGG
* * *
82362760 GGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACTAGG
1 GGTATTTCGGTAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGG
* ** *
82362814 GGTATTTTGGTAATTCTATCCTAC-AGGGGTATTTTAGTAATTTCA
1 GGTATTTCGGTAATTCTA-CAAACTAGGGGTATTTTGGTAATTTCA
82362859 TAATGAGGGT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 80 0.94
55 5 0.06
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (54 bp):
GGTATTTCGGTAATTCTACAAACTAGGGGTATTTTGGTAATTTCACAAACCAGG
Found at i:82362895 original size:27 final size:27
Alignment explanation
Indices: 82362863--82363056 Score: 237
Period size: 27 Copynumber: 7.2 Consensus size: 27
82362853 ATTTCATAAT
* *
82362863 GAGGGTAAAACGGTAATTTTGTAAA-C
1 GAGGGTAAAACGGTAATTCTATAAATC
* *
82362889 TGAGGGTAAAATGGTAATTTTATAAATC
1 -GAGGGTAAAACGGTAATTCTATAAATC
* * *
82362917 GAGGGTAAGACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
*
82362944 GAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* * *
82362971 GAGGGTAAAACGGTAATTTTGTAAATT
1 GAGGGTAAAACGGTAATTCTATAAATC
*
82362998 GAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
* **
82363025 GAGGGTAAAATGGTAATTCTACGAATC
1 GAGGGTAAAACGGTAATTCTATAAATC
82363052 GAGGG
1 GAGGG
82363057 CATTTCAGTA
Statistics
Matches: 143, Mismatches: 23, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 142 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTATAAATC
Found at i:82362933 original size:54 final size:53
Alignment explanation
Indices: 82362863--82363042 Score: 270
Period size: 54 Copynumber: 3.3 Consensus size: 53
82362853 ATTTCATAAT
*
82362863 GAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTATAAATC
1 GAGGGTAAAACGGTAATTTTGTAAA-TGAGGGTAAAATGGTAATTCTATAAATC
* * *
82362917 GAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTTTGTAAAT-GAGGGTAAAATGGTAATTCTATAAATC
* *
82362971 GAGGGTAAAACGGTAATTTTGTAAATTGAGGGTGAAACGGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTTTGTAAA-TGAGGGTAAAATGGTAATTCTATAAATC
*
82363025 GAGGGTAAAATGGTAATT
1 GAGGGTAAAACGGTAATT
82363043 CTACGAATCG
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
53 1 0.01
54 112 0.98
55 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.29
Consensus pattern (53 bp):
GAGGGTAAAACGGTAATTTTGTAAATGAGGGTAAAATGGTAATTCTATAAATC
Found at i:82362975 original size:81 final size:81
Alignment explanation
Indices: 82362863--82363056 Score: 266
Period size: 81 Copynumber: 2.4 Consensus size: 81
82362853 ATTTCATAAT
* * * *
82362863 GAGGGTAAAACGGTAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTATAAATCGAGGGT-AAG
1 GAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAACGGTAATTTTATAAATCGAGGGTGAA-
*
82362926 ACAGTAATTCTGTAAATC
64 ACAGTAATTCTATAAATC
* *
82362944 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTGAAAC
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTGAAAC
*
82363009 GGTAATTCTATAAATC
66 AGTAATTCTATAAATC
**
82363025 GAGGGTAAAATGGTAATTCTACGAATCGAGGG
1 GAGGGTAAAATGGTAATTCTATAAATCGAGGG
82363057 CATTTCAGTA
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
81 98 0.97
82 3 0.03
ACGTcount: A:0.38, C:0.08, G:0.26, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTATAAATCGAGGGTGAAAC
AGTAATTCTATAAATC
Found at i:82363068 original size:81 final size:81
Alignment explanation
Indices: 82362902--82363076 Score: 226
Period size: 81 Copynumber: 2.2 Consensus size: 81
82362892 GGGTAAAATG
* * *
82362902 GTAATTTTATAAATCGAGGGTAAGACAGTAATTCTGTAAATCGAGGGTAAAATGGTAATTCTATA
1 GTAATTTTGTAAATCGAGGGTAAGACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
* *
82362967 AATCGAGGGTAAAACG
66 AATCGAGGGCAAAACA
* *
82362983 GTAATTTTGTAAATTGAGGGTGAA-ACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAC
1 GTAATTTTGTAAATCGAGGGT-AAGACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTAC
* ***
82363047 GAATCGAGGGCATTTCA
65 AAATCGAGGGCAAAACA
*
82363064 GTAATTTGGTAAA
1 GTAATTTTGTAAA
82363077 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
81 79 0.98
82 2 0.02
ACGTcount: A:0.37, C:0.09, G:0.24, T:0.30
Consensus pattern (81 bp):
GTAATTTTGTAAATCGAGGGTAAGACAGTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
AATCGAGGGCAAAACA
Found at i:82364675 original size:12 final size:12
Alignment explanation
Indices: 82364658--82364683 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82364648 CCACATACGC
82364658 CCGTGTGCTAGG
1 CCGTGTGCTAGG
82364670 CCGTGTGCTAGG
1 CCGTGTGCTAGG
82364682 CC
1 CC
82364684 ATGCCAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.31, G:0.38, T:0.23
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:82370607 original size:16 final size:16
Alignment explanation
Indices: 82370586--82370618 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
82370576 AAAAATTAAT
82370586 ATATAAATTATA-ATTA
1 ATAT-AATTATATATTA
82370602 ATATAATTATATATTA
1 ATATAATTATATATTA
82370618 A
1 A
82370619 AGTTTATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATAATTATATATTA
Found at i:82378880 original size:40 final size:40
Alignment explanation
Indices: 82378804--82378988 Score: 174
Period size: 41 Copynumber: 4.6 Consensus size: 40
82378794 ATTCAATATC
* * * * * *
82378804 TCGCACGCTAAGTGCCGTACATTACTGACGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
* *
82378844 TCGCACACTAAGTGCCATATATAACCGAAGCCATCTC-GA
1 TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
* * * *
82378883 TCTCACATAGTAAGTGCCATATATAGCCGAAGCTATCTCAATC
1 TCGCAC--ACTAAGTGCCATATATAACCGAAGCTATCTCAA-A
* * * *
82378926 TCGCACACTAAATGCCATATATAGCCAAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
* *
82378966 CCGCACACTAAGTGCCACATATA
1 TCGCACACTAAGTGCCATATATA
82378989 GCTGATTTGT
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
39 6 0.05
40 50 0.42
41 57 0.48
43 5 0.04
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAACCGAAGCTATCTCAAA
Found at i:82378899 original size:41 final size:41
Alignment explanation
Indices: 82378847--82378990 Score: 182
Period size: 41 Copynumber: 3.5 Consensus size: 41
82378837 TCTCAAATCG
* *
82378847 CACACTAAGTGCCATATATAACCGAAGCCATCTCGATCTCA
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
* * * *
82378888 CATAGTAAGTGCCATATATAGCCGAAGCTATCTCAATCTCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
* * * *
82378929 CACACTAAATGCCATATATAGCCAAAGCTATCTCGAAC-CG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
*
82378969 CACACTAAGTGCCACATATAGC
1 CACACTAAGTGCCATATATAGC
82378991 TGATTTGTTG
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 22 0.25
41 67 0.75
ACGTcount: A:0.35, C:0.29, G:0.14, T:0.22
Consensus pattern (41 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCGATCTCA
Found at i:82378962 original size:82 final size:80
Alignment explanation
Indices: 82378833--82378990 Score: 208
Period size: 82 Copynumber: 1.9 Consensus size: 80
82378823 CATTACTGAC
* * * * *
82378833 GCTATCTCAAATCGCACACTAAGTGCCATATATAACCGAAGCCATCTCGATCTCACATAGTAAGT
1 GCTATCTCAAATCGCACACTAAATGCCATATATAACCAAAGCCATCTCGAAC-CACACACTAAGT
*
82378898 GCCATATATAGCCGAA
65 GCCACATATAGCCGAA
* * * *
82378914 GCTATCTCAATCTCGCACACTAAATGCCATATATAGCCAAAGCTATCTCGAACCGCACACTAAGT
1 GCTATCTCAA-ATCGCACACTAAATGCCATATATAACCAAAGCCATCTCGAACCACACACTAAGT
82378979 GCCACATATAGC
65 GCCACATATAGC
82378991 TGATTTGTTG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
81 30 0.45
82 36 0.55
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (80 bp):
GCTATCTCAAATCGCACACTAAATGCCATATATAACCAAAGCCATCTCGAACCACACACTAAGTG
CCACATATAGCCGAA
Found at i:82383396 original size:13 final size:13
Alignment explanation
Indices: 82383378--82383404 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
82383368 GAAGTAGTCG
82383378 CACACGGGCGTGT
1 CACACGGGCGTGT
82383391 CACACGGGCGTGT
1 CACACGGGCGTGT
82383404 C
1 C
82383405 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:82387720 original size:48 final size:48
Alignment explanation
Indices: 82387649--82387933 Score: 374
Period size: 48 Copynumber: 5.9 Consensus size: 48
82387639 ACTCAAAAGT
* * * *
82387649 CTCGCACCCTATGTGCCAATATCATAGCCCGAAGCCAAATCAATG-AA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* *
82387696 GCTCGCACCCGAAGTGCCAATATCATGGCCTGAAGCCAAATCAATGTAA
1 -CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* *
82387745 CTCGCACCCGAAGTGCTAATATCATGGTCCGAAGCCAAATAAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * * *
82387793 CTCGCACCTGAAGTGCTAATATCATGGCCCAAAGCTAAATTAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
** * *
82387841 CTCGTGCCTGAAGTGCTAATATCATGGCCCGTAGCCAAATCAATGTAA
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
* * * *
82387889 CTCGCACCTGAAGTGCTAATATCATGGCCCGTAGACAAATTAATG
1 CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATG
82387934 AAGCTCCAAA
Statistics
Matches: 213, Mismatches: 23, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
48 211 0.99
49 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCTAATATCATGGCCCGAAGCCAAATCAATGTAA
Found at i:82393964 original size:45 final size:45
Alignment explanation
Indices: 82393900--82393985 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
82393890 ATGAAATTCG
* * *
82393900 AACTCATTGAGTTGTGGTCTGAATTCATGATATATGTGACATCCA
1 AACTCATTAAGATATGGTCTGAATTCATGATATATGTGACATCCA
* *
82393945 AACTCATTAAGATATGGTCTGAGTTCGTGATATATGTGACA
1 AACTCATTAAGATATGGTCTGAATTCATGATATATGTGACA
82393986 CATGTTTTGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (45 bp):
AACTCATTAAGATATGGTCTGAATTCATGATATATGTGACATCCA
Found at i:82400586 original size:22 final size:22
Alignment explanation
Indices: 82400557--82400612 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
82400547 ATCCTATAAC
* *
82400557 TTTT-TGAAACTCTGTTTAGAA
1 TTTTCTGAAACTATGATTAGAA
*
82400578 TTTTCTGAAAGTATGATTAGAA
1 TTTTCTGAAACTATGATTAGAA
* *
82400600 TATACTGAAACTA
1 TTTTCTGAAACTA
82400613 CTTTAAGTAG
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 4 0.14
22 24 0.86
ACGTcount: A:0.36, C:0.09, G:0.14, T:0.41
Consensus pattern (22 bp):
TTTTCTGAAACTATGATTAGAA
Found at i:82407852 original size:19 final size:19
Alignment explanation
Indices: 82407828--82407878 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 19
82407818 GACATAGGGA
* *
82407828 CACGCCCGTGTGCATTTGG
1 CACGCCCGTGTACATTTAG
* *
82407847 CACGCCAGTGTACCTTTAG
1 CACGCCCGTGTACATTTAG
*
82407866 CATGCCCGTGTAC
1 CACGCCCGTGTAC
82407879 TCAGGTCGTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.16, C:0.33, G:0.25, T:0.25
Consensus pattern (19 bp):
CACGCCCGTGTACATTTAG
Found at i:82413387 original size:37 final size:37
Alignment explanation
Indices: 82413337--82413415 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
82413327 TTATTACGAA
* * *
82413337 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
82413374 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
82413411 GTCTT
1 GTCTT
82413416 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:82413612 original size:47 final size:47
Alignment explanation
Indices: 82413534--82413969 Score: 719
Period size: 47 Copynumber: 9.1 Consensus size: 47
82413524 CCCTTCGGGA
* * * * * *
82413534 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
82413581 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82413628 CTTATCACATATATATACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413675 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413722 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82413771 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413820 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
82413867 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413914 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413963 CTTATCA
1 CTTATCA
82413970 TCACATCGGC
Statistics
Matches: 369, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
47 228 0.62
49 141 0.38
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82413874 original size:192 final size:190
Alignment explanation
Indices: 82413534--82413969 Score: 750
Period size: 192 Copynumber: 2.3 Consensus size: 190
82413524 CCCTTCGGGA
* * * * * * *
82413534 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
82413597 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
82413662 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413722 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
*
82413787 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
*
82413852 CATCGGCCATTAGGCTTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
129 CATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
82413914 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCA
82413970 TCACATCGGC
Statistics
Matches: 234, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
188 10 0.04
189 1 0.00
190 37 0.16
192 186 0.79
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:82413997 original size:22 final size:25
Alignment explanation
Indices: 82413942--82413994 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
82413932 ACTTTCACAT
82413942 TCATCACATCGGCCATTAGGCCTTA
1 TCATCACATCGGCCATTAGGCCTTA
82413967 TCATCACATCGGCCATTAGGCCTTA
1 TCATCACATCGGCCATTAGGCCTTA
82413992 TCA
1 TCA
82413995 CATATATACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (25 bp):
TCATCACATCGGCCATTAGGCCTTA
Found at i:82413997 original size:143 final size:143
Alignment explanation
Indices: 82413534--82413969 Score: 750
Period size: 143 Copynumber: 3.0 Consensus size: 143
82413524 CCCTTCGGGA
* * * * * * * *
82413534 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82413599 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT--ACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
82413662 TCGGCCATTAGGC
131 TCGGCCATTAGGC
82413675 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
82413740 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
*
82413805 CATTGGCCATTAGGC
129 CATCGGCCATTAGGC
*
82413820 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCTTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
82413885 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
82413950 TCGGCCATTAGGC
131 TCGGCCATTAGGC
82413963 CTTATCA
1 CTTATCA
82413970 TCACATCGGC
Statistics
Matches: 280, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
141 47 0.17
143 149 0.53
145 84 0.30
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (143 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGC
Found at i:82414378 original size:40 final size:40
Alignment explanation
Indices: 82414239--82414381 Score: 146
Period size: 40 Copynumber: 3.6 Consensus size: 40
82414229 GCTACTCGTT
* * * * *
82414239 CAAATGCCTTCGAGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* * * *
82414279 CAAATGCCTTCGGGACTTAACCCGGATTTAGTGACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
* * *
82414319 CAAATGCCTTC-GGATCTTAGTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCA
82414360 CAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
82414382 AGACATCATT
Statistics
Matches: 85, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
39 3 0.04
40 71 0.84
41 11 0.13
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
Found at i:82418963 original size:3 final size:3
Alignment explanation
Indices: 82418955--82418981 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
82418945 GGATGTTTTA
82418955 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
82418982 TAGTATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:82421569 original size:60 final size:60
Alignment explanation
Indices: 82421493--82421629 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
82421483 AACTATGTTA
* *
82421493 ATATGGGCAAGGCCCAATATA-TCTGGA-CTTGTAATAGGGCCATGGCCCAGATT-GATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GATATTGTAA-AGGGCCATGGCCCAGATTAG-TACTG
* ** * *
82421553 ATATGGGCTAGGCCCAATATACTCTGATATTGTAAGGGGTTATGGCCTAGATTAGTATTG
1 ATATGGGCTAGGCCCAATATACTCTGATATTGTAAAGGGCCATGGCCCAGATTAGTACTG
82421613 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
82421630 GTTAACATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
60 49 0.74
61 17 0.26
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (60 bp):
ATATGGGCTAGGCCCAATATACTCTGATATTGTAAAGGGCCATGGCCCAGATTAGTACTG
Found at i:82423615 original size:12 final size:12
Alignment explanation
Indices: 82423598--82423622 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82423588 AAATATATAC
82423598 AAATGTACATAT
1 AAATGTACATAT
82423610 AAATGTACATAT
1 AAATGTACATAT
82423622 A
1 A
82423623 TGAATATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (12 bp):
AAATGTACATAT
Found at i:82426066 original size:33 final size:33
Alignment explanation
Indices: 82425943--82426067 Score: 101
Period size: 33 Copynumber: 3.8 Consensus size: 33
82425933 AGTGTTTATA
* *
82425943 TGTAAGACCATAGCTGGGCTATGGC-ATTC-TG
1 TGTAAGACCATAGTTGGGCTATGGCAATACATG
* * **
82425974 ATGATAAGACCATAATTGGGCTATGGCACTACAAA
1 -TG-TAAGACCATAGTTGGGCTATGGCAATACATG
* *** * *
82426009 TGTAAGACCATGGCAAGGCCATGGCAATGCATG
1 TGTAAGACCATAGTTGGGCTATGGCAATACATG
*
82426042 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGTTGGGCTATGGCA
82426068 TAATCAGAAA
Statistics
Matches: 68, Mismatches: 22, Indels: 5
0.72 0.23 0.05
Matches are distributed among these distances:
32 2 0.03
33 62 0.91
34 4 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (33 bp):
TGTAAGACCATAGTTGGGCTATGGCAATACATG
Found at i:82429132 original size:28 final size:28
Alignment explanation
Indices: 82429070--82429132 Score: 67
Period size: 28 Copynumber: 2.2 Consensus size: 28
82429060 AGTTTCTGTA
82429070 CTATTTGTATATTTAGAATTTAATTCCAT
1 CTATTT-TATATTTAGAATTTAATTCCAT
* * *
82429099 -TTTTTTATTTTTAAGAATTTAA-TCCCT
1 CTATTTTATATTT-AGAATTTAATTCCAT
82429126 CTATTTT
1 CTATTTT
82429133 TCAAATTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
27 10 0.36
28 18 0.64
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57
Consensus pattern (28 bp):
CTATTTTATATTTAGAATTTAATTCCAT
Found at i:82436184 original size:73 final size:73
Alignment explanation
Indices: 82436094--82436244 Score: 293
Period size: 73 Copynumber: 2.1 Consensus size: 73
82436084 ATGGCTGCTC
82436094 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
1 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
82436159 CTTCATAA
66 CTTCATAA
*
82436167 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTTTCTTTTTATATCCTACAGGTAGGAAAG
1 TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
82436232 CTTCATAA
66 CTTCATAA
82436240 TTAAT
1 TTAAT
82436245 ACGTGGTGTT
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 77 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.42
Consensus pattern (73 bp):
TTAATTAACGATTTGAGAAGGGTTTTTATTAGGTTCTATCTTTTTATATCCTACAGGTAGGAAAG
CTTCATAA
Found at i:82441041 original size:10 final size:10
Alignment explanation
Indices: 82441022--82441077 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
82441012 TTTAATTTTT
*
82441022 TATATGTTTA
1 TATATATTTA
82441032 TATATATTTA
1 TATATATTTA
82441042 TATAT-TTT-
1 TATATATTTA
*
82441050 TAGT-TATCT-
1 TA-TATATTTA
82441059 TATATATTTA
1 TATATATTTA
82441069 TATAT-TTTA
1 TATATATTTA
82441078 AAATTTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
8 4 0.10
9 16 0.41
10 19 0.49
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (10 bp):
TATATATTTA
Found at i:82441043 original size:8 final size:8
Alignment explanation
Indices: 82441032--82441075 Score: 52
Period size: 8 Copynumber: 5.1 Consensus size: 8
82441022 TATATGTTTA
82441032 TATATATT
1 TATATATT
82441040 TATATATT
1 TATATATT
*
82441048 TTTAGTTATCT
1 TATA--TAT-T
82441059 TATATATT
1 TATATATT
82441067 TATATATT
1 TATATATT
82441075 T
1 T
82441076 TAAAATTTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
8 21 0.68
9 3 0.10
10 3 0.10
11 4 0.13
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (8 bp):
TATATATT
Found at i:82441049 original size:27 final size:28
Alignment explanation
Indices: 82441019--82441077 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 28
82441009 TATTTTAATT
82441019 TTTTATATGTT-T-ATATATATTTATATA
1 TTTTATA-GTTATCATATATATTTATATA
*
82441046 TTTT-TAGTTATCTTATATATTTATATA
1 TTTTATAGTTATCATATATATTTATATA
82441073 TTTTA
1 TTTTA
82441078 AAATTTACAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 3 0.11
26 3 0.11
27 22 0.79
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTATAGTTATCATATATATTTATATA
Found at i:82441659 original size:26 final size:26
Alignment explanation
Indices: 82441623--82441732 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
82441613 TGATACAAAT
*
82441623 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82441649 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82441675 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
82441701 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
82441727 TGATAA
1 TGATAA
82441733 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:82444472 original size:20 final size:21
Alignment explanation
Indices: 82444432--82444472 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
82444422 TGTGAAATAT
*
82444432 ATATATTTTTTAATTAATTTAC
1 ATATATTTTTAAATT-ATTTAC
82444454 ATATATTTTTAAATT-TTTA
1 ATATATTTTTAAATTATTTA
82444473 TTTTATATCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
22 14 0.78
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
ATATATTTTTAAATTATTTAC
Found at i:82446252 original size:96 final size:97
Alignment explanation
Indices: 82446127--82446497 Score: 453
Period size: 96 Copynumber: 3.8 Consensus size: 97
82446117 TTGCCAACGT
* * *
82446127 CATGTCCCAAACATGGTCTTACACTGGCACACATATTAT-ATTCGATGCCATGTCTCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATCATCCGATGCCATGTCCCAGACATGG
*
82446191 TCTTACACAGGCACATATATCATTGCCGATGC
66 TCTTACACAGGCACATATATCATCGCCGATGC
* * *
82446223 CATGTCCCAAACATGGTCTTACACTGGCACACATATCAT-TTACGATGCCATGTCCCAGATATGG
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATCATCCGATGCCATGTCCCAGACATGG
* *
82446287 TCTTACACAGGCACATTTATCATCACCGATGC
66 TCTTACACAGGCACATATATCATCGCCGATGC
* * * *
82446319 CATGTCCCAAACATGGTCTTACA-TAGGCACATATATCATCGTCGCCGATGCCATATTCCAGACA
1 CATGTCCCAAACATGGTCTTACACT-GGCACACATATCATCAT--CCGATGCCATGTCCCAGACA
* * * *
82446383 TAGTCTGACACAGGCATATATATCATCGTCGATGC
63 TGGTCTTACACAGGCACATATATCATCGCCGATGC
* * * ** * * *
82446418 CATATCCCAGACATGGTCTTACACAGGCACATTTTTCATCA-CCAATGCTATGTCCCAGACATGG
1 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATCATCCGATGCCATGTCCCAGACATGG
*
82446482 TCTTACACAAGCACAT
66 TCTTACACAGGCACAT
82446498 TTAGCATGGT
Statistics
Matches: 236, Mismatches: 34, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
95 1 0.00
96 155 0.66
97 1 0.00
99 79 0.33
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (97 bp):
CATGTCCCAAACATGGTCTTACACTGGCACACATATCATCATCCGATGCCATGTCCCAGACATGG
TCTTACACAGGCACATATATCATCGCCGATGC
Found at i:82446441 original size:147 final size:144
Alignment explanation
Indices: 82446131--82446497 Score: 459
Period size: 147 Copynumber: 2.5 Consensus size: 144
82446121 CAACGTCATG
* * ** * * *
82446131 TCCCAAACATGGTCTTACACTGGCACACATATTAT-ATTCGATGCCATGTCTCAGACATGGTCTT
1 TCCCAGACATGGTCTTACACAGGCACATTTATCATCA-CCGATGCCATGTCCCAGACATGGTCTT
* * * *
82446195 ACACAGGCACATATATCATTGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATC
65 ACACAGGCACATATATCATTGCCGATGCCATATCCCAAACATAGTCTGACACAGGCACACATATC
* *
82446260 ATTTACGATGCCATG
130 ATGTACGATGCCATA
* *
82446275 TCCCAGATATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAAACATGGTCTTA
1 TCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAGACATGGTCTTA
* * * * *
82446340 CATAGGCACATATATCATCGTCGCCGATGCCATATTCCAGACATAGTCTGACACAGGCATATATA
66 CACAGGCACATATATCAT--T-GCCGATGCCATATCCCAAACATAGTCTGACACAGGCACACATA
82446405 TCATCGT-CGATGCCATA
128 TCAT-GTACGATGCCATA
* * *
82446422 TCCCAGACATGGTCTTACACAGGCACATTTTTCATCACCAATGCTATGTCCCAGACATGGTCTTA
1 TCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAGACATGGTCTTA
*
82446487 CACAAGCACAT
66 CACAGGCACAT
82446498 TTAGCATGGT
Statistics
Matches: 191, Mismatches: 27, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
144 71 0.37
145 1 0.01
146 1 0.01
147 117 0.61
148 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (144 bp):
TCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGCCATGTCCCAGACATGGTCTTA
CACAGGCACATATATCATTGCCGATGCCATATCCCAAACATAGTCTGACACAGGCACACATATCA
TGTACGATGCCATA
Found at i:82446490 original size:48 final size:48
Alignment explanation
Indices: 82446127--82446500 Score: 392
Period size: 48 Copynumber: 7.7 Consensus size: 48
82446117 TTGCCAACGT
* * ** * *
82446127 CATGTCCCAAACATGGTCTTACACTGGCACACATATTAT-ATTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCA-CCGATGC
* * **
82446175 CATGTCTCAGACATGGTCTTACACAGGCACATATATCATTGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* * ** *
82446223 CATGTCCCAAACATGGTCTTACACTGGCACACATATCATTTA-CGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCA-TCACCGATGC
*
82446271 CATGTCCCAGATATGGTCTTACACAGGCACATTTATCATCACCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* * * *
82446319 CATGTCCCAAACATGGTCTTACATAGGCACATATATCATCGTCGCCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACAT-T-T-ATCATCACCGATGC
* * * * * * **
82446370 CATATTCCAGACATAGTCTGACACAGGCATATATATCATCGTCGATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* * *
82446418 CATATCCCAGACATGGTCTTACACAGGCACATTTTTCATCACCAATGC
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
* *
82446466 TATGTCCCAGACATGGTCTTACACAAGCACATTTA
1 CATGTCCCAGACATGGTCTTACACAGGCACATTTA
82446501 GCATGGTGTC
Statistics
Matches: 274, Mismatches: 46, Indels: 12
0.83 0.14 0.04
Matches are distributed among these distances:
47 2 0.01
48 230 0.84
49 4 0.01
50 1 0.00
51 37 0.14
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACAGGCACATTTATCATCACCGATGC
Found at i:82450628 original size:18 final size:18
Alignment explanation
Indices: 82450600--82450663 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
82450590 GAACAATTAA
* *
82450600 TTATTTAGTAATAGTCAG
1 TTATTCAGTAATAATCAG
* * *
82450618 TTATTCGGTAACAATCAA
1 TTATTCAGTAATAATCAG
*
82450636 TTATTCAATAATAATCAG
1 TTATTCAGTAATAATCAG
82450654 TTATTCAGTA
1 TTATTCAGTA
82450664 TCAATCAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (18 bp):
TTATTCAGTAATAATCAG
Found at i:82450631 original size:36 final size:36
Alignment explanation
Indices: 82450578--82450671 Score: 109
Period size: 36 Copynumber: 2.6 Consensus size: 36
82450568 TTCATTAACG
* * * * *
82450578 ATCAGTCAATCAG-AACAATTAATTATTTAGTAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
* *
82450613 GTCAGTTATTCGGTAACAATCAATTATTCAATAATA
1 ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
*
82450649 ATCAGTTATTCAGTATCAATCAA
1 ATCAGTTATTCAGTAACAATCAA
82450672 CTGATTGGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
35 9 0.19
36 39 0.81
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (36 bp):
ATCAGTTATTCAGTAACAATCAATTATTCAATAATA
Found at i:82450669 original size:18 final size:18
Alignment explanation
Indices: 82450614--82450670 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
82450604 TTAGTAATAG
* *
82450614 TCAGTTATTCGGTAACAA
1 TCAGTTATTCAGTATCAA
* *
82450632 TCAATTATTCAATAAT-AA
1 TCAGTTATTCAGT-ATCAA
82450650 TCAGTTATTCAGTATCAA
1 TCAGTTATTCAGTATCAA
82450668 TCA
1 TCA
82450671 ACTGATTGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 2 0.06
18 28 0.90
19 1 0.03
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.37
Consensus pattern (18 bp):
TCAGTTATTCAGTATCAA
Found at i:82450706 original size:18 final size:18
Alignment explanation
Indices: 82450680--82450750 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
82450670 AACTGATTGG
*
82450680 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAGTCAA
* *
82450698 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAGTCA-A
* * *
82450717 -TATACAGTAACAATTAAA
1 TTATTCAGTAAC-AGTCAA
*
82450735 TTATTCGGTAACAGTC
1 TTATTCAGTAACAGTC
82450751 GATCTTTCCA
Statistics
Matches: 39, Mismatches: 11, Indels: 6
0.70 0.20 0.11
Matches are distributed among these distances:
18 26 0.67
19 13 0.33
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.31
Consensus pattern (18 bp):
TTATTCAGTAACAGTCAA
Found at i:82450929 original size:53 final size:53
Alignment explanation
Indices: 82450869--82450998 Score: 154
Period size: 53 Copynumber: 2.5 Consensus size: 53
82450859 CCGGAACAGT
**
82450869 AACAGTAACAGTAGTAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
* * * * **
82450922 AACAGTAACAGTAACATTACGGTACACAGAGTGCCTCATCGGAACAAATCTGA
1 AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
* *
82450975 AATAATAACAGTAAC-GTAACAGTA
1 AACAGTAACAGTAACAGT-ACAGTA
82450999 ACAATATCCG
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
52 1 0.02
53 63 0.98
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACAGTACACAGAGTACCTCATCGAAACAAATCCAA
Found at i:82452153 original size:6 final size:6
Alignment explanation
Indices: 82452144--82452168 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
82452134 GTTTTGCCTA
82452144 TTCTAT TTCTAT TTCTAT TTCTAT T
1 TTCTAT TTCTAT TTCTAT TTCTAT T
82452169 CTTTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (6 bp):
TTCTAT
Found at i:82456867 original size:18 final size:18
Alignment explanation
Indices: 82456824--82456880 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
82456814 TTAGTAATAG
*
82456824 TCAGTTATTCGATAACAA
1 TCAGTTATTCAATAACAA
* *
82456842 TCAATTATTCAATAATAA
1 TCAGTTATTCAATAACAA
* * *
82456860 TTAGTTATTCAGTATCAA
1 TCAGTTATTCAATAACAA
82456878 TCA
1 TCA
82456881 ACTGATCTGT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (18 bp):
TCAGTTATTCAATAACAA
Found at i:82456881 original size:36 final size:36
Alignment explanation
Indices: 82456801--82456869 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
82456791 AGTCAATCAG
* * * *
82456801 AACAATTAATTATTTAGTAATAGTCAGTTATTCGAT
1 AACAATCAATTATTCAATAATAATCAGTTATTCGAT
*
82456837 AACAATCAATTATTCAATAATAATTAGTTATTC
1 AACAATCAATTATTCAATAATAATCAGTTATTC
82456870 AGTATCAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 28 1.00
ACGTcount: A:0.42, C:0.10, G:0.07, T:0.41
Consensus pattern (36 bp):
AACAATCAATTATTCAATAATAATCAGTTATTCGAT
Found at i:82456955 original size:19 final size:19
Alignment explanation
Indices: 82456890--82456957 Score: 68
Period size: 18 Copynumber: 3.7 Consensus size: 19
82456880 AACTGATCTG
* *
82456890 TTATCCAGTAACAGTC-AA
1 TTATTCAGTAACAATCAAA
* *
82456908 TTATTCAGTAAAAATCAGA
1 TTATTCAGTAACAATCAAA
* *
82456927 -TATACAGTAACAATTAAA
1 TTATTCAGTAACAATCAAA
82456945 TTATTCAGTAACA
1 TTATTCAGTAACA
82456958 GTCGATCTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
18 27 0.69
19 12 0.31
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (19 bp):
TTATTCAGTAACAATCAAA
Found at i:82457134 original size:53 final size:53
Alignment explanation
Indices: 82457073--82457193 Score: 165
Period size: 53 Copynumber: 2.3 Consensus size: 53
82457063 CCGAAGCCGG
*
82457073 AACAGTAACAGTAGCAGTACGGTACACAGAGTACCTCATC-GGAACAAAT-TCGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGG-ACAAATCT-GA
* *
82457126 AACAGTAACAGTAACATTACGGTACACAGAGTGCCTCATCAGGACAAATCTGA
1 AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGGACAAATCTGA
* *
82457179 AATAATAACAGTAAC
1 AACAGTAACAGTAAC
82457194 GTAACAGTAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
53 58 0.95
54 3 0.05
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.18
Consensus pattern (53 bp):
AACAGTAACAGTAACAGTACGGTACACAGAGTACCTCATCAGGACAAATCTGA
Found at i:82459896 original size:15 final size:16
Alignment explanation
Indices: 82459870--82459902 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
82459860 AAAACAAACC
82459870 ATTTTGTTAAAAAAAT
1 ATTTTGTTAAAAAAAT
*
82459886 ATTTT-TTAAAAATAT
1 ATTTTGTTAAAAAAAT
82459901 AT
1 AT
82459903 AAAGAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
ATTTTGTTAAAAAAAT
Found at i:82460218 original size:37 final size:38
Alignment explanation
Indices: 82460177--82460252 Score: 127
Period size: 37 Copynumber: 2.0 Consensus size: 38
82460167 ACATATTTAA
*
82460177 TATTTAGTCAATATAAAGAAACAAAT-ATAAAAAACCC
1 TATTTAGTCAATATAAAGAAACAAATAAAAAAAAACCC
*
82460214 TATTTAGTCTATATAAAGAAACAAATAAAAAAAAACCC
1 TATTTAGTCAATATAAAGAAACAAATAAAAAAAAACCC
82460252 T
1 T
82460253 TAAAAGCAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 25 0.69
38 11 0.31
ACGTcount: A:0.57, C:0.13, G:0.05, T:0.25
Consensus pattern (38 bp):
TATTTAGTCAATATAAAGAAACAAATAAAAAAAAACCC
Found at i:82464573 original size:23 final size:23
Alignment explanation
Indices: 82464543--82464588 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
82464533 GCCCGATTTT
*
82464543 AGCTAAATCGGAATAGTGGTTTC
1 AGCTAAATCAGAATAGTGGTTTC
82464566 AGCTAAATCAGAATAGTGGTTTC
1 AGCTAAATCAGAATAGTGGTTTC
82464589 GAAACCACAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (23 bp):
AGCTAAATCAGAATAGTGGTTTC
Found at i:82468974 original size:21 final size:21
Alignment explanation
Indices: 82468950--82468990 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
82468940 CATCGTGGCA
82468950 AGTTAACTTGCCACATCAGCT
1 AGTTAACTTGCCACATCAGCT
*
82468971 AGTTAACTTGCCACGTCAGC
1 AGTTAACTTGCCACATCAGC
82468991 AATTCTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:82469858 original size:13 final size:14
Alignment explanation
Indices: 82469834--82469863 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
82469824 TATTACAAAT
82469834 ATACATAAAATAAA
1 ATACATAAAATAAA
82469848 ATACA-AAAATAAA
1 ATACATAAAATAAA
82469861 ATA
1 ATA
82469864 TAATTATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (14 bp):
ATACATAAAATAAA
Found at i:82474769 original size:38 final size:38
Alignment explanation
Indices: 82474727--82474803 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
82474717 TTCTAGTAGC
*
82474727 TAGAAGGACTAAATAGCTATGGAATTTAAAACTTGAGG
1 TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
*
82474765 TAGAAGGATTAAATAGCTATGGAATTCAAAACTTGAGG
1 TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
82474803 T
1 T
82474804 CCTTATATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (38 bp):
TAGAAGGACTAAATAGCTATGGAATTCAAAACTTGAGG
Found at i:82475946 original size:57 final size:57
Alignment explanation
Indices: 82475848--82475973 Score: 139
Period size: 57 Copynumber: 2.2 Consensus size: 57
82475838 TTACAGAAAA
* * * * * *
82475848 GATTTAGCCTGGACTGATAATCCTGATATAAGCCTCTTGAGCATATTTTATAGATAG
1 GATTTAGCTTGGACGGATAATCCTGATATAAGCCTCTTGAGCATATGTTAGAAACAG
* * *
82475905 GATTTAGCTTGGACGGGTAATCTTGAT-TAAG-CTCTTATGAGCATATGTTGGAAACAG
1 GATTTAGCTTGGACGGATAATCCTGATATAAGCCTC-T-TGAGCATATGTTAGAAACAG
82475962 GATTTAGCTTGG
1 GATTTAGCTTGG
82475974 GCAAGTAATC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
55 3 0.05
56 5 0.09
57 50 0.86
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (57 bp):
GATTTAGCTTGGACGGATAATCCTGATATAAGCCTCTTGAGCATATGTTAGAAACAG
Found at i:82490126 original size:58 final size:58
Alignment explanation
Indices: 82490056--82490172 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
82490046 TAGATCATTC
82490056 ATAATTAATCGGAGTTGAATGCAATCATAGAGATAGGACGACATAAATCTGTCGGATT
1 ATAATTAATCGGAGTTGAATGCAATCATAGAGATAGGACGACATAAATCTGTCGGATT
82490114 ATAATTAATCGGAGTTGAATGCAATCATAGAGATAGGACGACATAAATCTGTCGGATT
1 ATAATTAATCGGAGTTGAATGCAATCATAGAGATAGGACGACATAAATCTGTCGGATT
82490172 A
1 A
82490173 GAGTCAAATC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (58 bp):
ATAATTAATCGGAGTTGAATGCAATCATAGAGATAGGACGACATAAATCTGTCGGATT
Found at i:82492586 original size:171 final size:170
Alignment explanation
Indices: 82492301--82492643 Score: 652
Period size: 171 Copynumber: 2.0 Consensus size: 170
82492291 TAAAATATAT
82492301 ATTATAATATTATAATATATATCTTCCTTATTAAGTATATATATTATATTATATATTATAATAAG
1 ATTATAATATTATAATATATATCTTCCTTATTAAG-ATATATATTATATTATATATTATAATAAG
82492366 TAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAAGA
65 TAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAAGA
82492431 AAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
130 AAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
82492472 ATTATAATATTATAATATATATATCTTCCTTATTAAG-TATATATTATATTATATATTATAATAA
1 ATTATAATATTAT-A-ATATATATCTTCCTTATTAAGATATATATTATATTATATATTATAATAA
82492536 GTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAAG
64 GTAAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAAG
82492601 AAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
129 AAAGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
82492643 A
1 A
82492644 GCTAGGGATT
Statistics
Matches: 170, Mismatches: 0, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
171 148 0.87
172 1 0.01
173 21 0.12
ACGTcount: A:0.58, C:0.05, G:0.13, T:0.24
Consensus pattern (170 bp):
ATTATAATATTATAATATATATCTTCCTTATTAAGATATATATTATATTATATATTATAATAAGT
AAATATAATAAATAAAAGAAACAAAAAGAAAGACAGAAGGTTAAACGAAATAGAAAGAAAAAGAA
AGCAAAAGAAAAAGAGAAAGAAGGAAGGAGAAAGATACAA
Found at i:82497581 original size:62 final size:62
Alignment explanation
Indices: 82497513--82497629 Score: 216
Period size: 62 Copynumber: 1.9 Consensus size: 62
82497503 CAAAATAAAT
* *
82497513 ATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAGAATGTTTATCTACAAAATATGC
1 ATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAGAATGCTTATATACAAAATATGC
82497575 ATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAGAATGCTTATATACAA
1 ATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAGAATGCTTATATACAA
82497630 GAAAAGTATT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (62 bp):
ATTAAATTAAATTTAATATTAAATCTTATTAAAATAATAGAATGCTTATATACAAAATATGC
Found at i:82498159 original size:9 final size:9
Alignment explanation
Indices: 82498145--82498183 Score: 69
Period size: 9 Copynumber: 4.3 Consensus size: 9
82498135 AAAATATCAT
82498145 ATTAATTTA
1 ATTAATTTA
82498154 ATTAATTTA
1 ATTAATTTA
82498163 ATTAATTTA
1 ATTAATTTA
*
82498172 ATTAATTAA
1 ATTAATTTA
82498181 ATT
1 ATT
82498184 TTACTTAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
ATTAATTTA
Done.