Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 257 of 295
Found at i:82499430 original size:19 final size:19
Alignment explanation
Indices: 82499406--82499443 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
82499396 CTAACTTTAT
82499406 TTATTTAGTCATTGTTCAA
1 TTATTTAGTCATTGTTCAA
82499425 TTATTTAGTCATTGTTCAA
1 TTATTTAGTCATTGTTCAA
82499444 ATAAATAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.53
Consensus pattern (19 bp):
TTATTTAGTCATTGTTCAA
Found at i:82513165 original size:20 final size:20
Alignment explanation
Indices: 82513104--82513166 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
82513094 TGGCGGGCTA
82513104 TGGATGATGTTACTCGGTGG
1 TGGATGATGTTACTCGGTGG
* ** *
82513124 TGGA-GGTGTTGGTGGGCT-G
1 TGGATGATGTTACTCGG-TGG
*
82513143 TGGATGATGTTACTTGGTGG
1 TGGATGATGTTACTCGGTGG
82513163 TGGA
1 TGGA
82513167 GGTGTCGGTA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
19 14 0.44
20 18 0.56
ACGTcount: A:0.13, C:0.06, G:0.46, T:0.35
Consensus pattern (20 bp):
TGGATGATGTTACTCGGTGG
Found at i:82513979 original size:17 final size:16
Alignment explanation
Indices: 82513951--82514003 Score: 88
Period size: 16 Copynumber: 3.2 Consensus size: 16
82513941 TTTGGTTCGC
82513951 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
82513967 TGTATTGGGATTAGAAG
1 TGTATT-GGATTAGAGG
82513984 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
82514000 TGTA
1 TGTA
82514004 ATAGCTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
16 19 0.56
17 15 0.44
ACGTcount: A:0.26, C:0.00, G:0.36, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:82514068 original size:44 final size:45
Alignment explanation
Indices: 82513984--82514074 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
82513974 GGATTAGAAG
* * *
82513984 TGTATTGGATTAGAGGTGTAATAGCTAATTCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATTCACTGTTTGGTTGAA
***
82514029 TGTAATGGAATAGAGGCGTAATAG-TAATTTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATTCACTGTTTGGTTGAA
82514073 TG
1 TG
82514075 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.04, G:0.29, T:0.40
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATTCACTGTTTGGTTGAA
Found at i:82514326 original size:157 final size:157
Alignment explanation
Indices: 82514126--82514442 Score: 546
Period size: 157 Copynumber: 2.0 Consensus size: 157
82514116 TAGAATACCC
*
82514126 TTAGCATAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
* * * *
82514191 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAATA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAA-A
82514256 ATATATAATTTAATAAAATTCTT-ATAA
130 ATATATAATTTAATAAAATTCTTAATAA
* *
82514283 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
82514348 ATATTAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
66 ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
82514413 TATATAATTTAATAAAATTCTTAATAA
131 TATATAATTTAATAAAATTCTTAATAA
82514440 TTA
1 TTA
82514443 ATATTCTTAT
Statistics
Matches: 151, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
156 24 0.16
157 127 0.84
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:82514413 original size:16 final size:16
Alignment explanation
Indices: 82514376--82514417 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
82514366 TTAATCATAT
*
82514376 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
82514392 TT-AAATATATTATAA
1 TTAAAATATATTATAA
82514407 TTAAAATATAT
1 TTAAAATATAT
82514418 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:82514424 original size:14 final size:15
Alignment explanation
Indices: 82514385--82514426 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82514375 TTTAAACATA
*
82514385 ATTATTATTAAATAT
1 ATTATAATTAAATAT
82514400 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
82514414 A-TATAATTTAATA
1 ATTATAATTAAATA
82514427 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:82514513 original size:120 final size:121
Alignment explanation
Indices: 82514379--82514671 Score: 502
Period size: 120 Copynumber: 2.4 Consensus size: 121
82514369 ATCATATTTA
82514379 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
82514444 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA-GT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AAATGTG
82514499 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
82514564 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
* * *
82514620 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
82514672 TAAAATAATT
Statistics
Matches: 165, Mismatches: 6, Indels: 4
0.94 0.03 0.02
Matches are distributed among these distances:
119 3 0.02
120 160 0.97
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAAATGTG
Found at i:82514544 original size:14 final size:15
Alignment explanation
Indices: 82514505--82514546 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
82514495 AAGTAACATA
*
82514505 ATTATTATTAAATAT
1 ATTATAATTAAATAT
82514520 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
82514534 A-TATAATTTAATA
1 ATTATAATTAAATA
82514547 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:82516371 original size:35 final size:35
Alignment explanation
Indices: 82516312--82516378 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
82516302 GCTACTTTTT
82516312 AAGTAACTTCAGATCAAAACTAAAATCCAAAAATC
1 AAGTAACTTCAGATCAAAACTAAAATCCAAAAATC
* * *
82516347 AAGTGACTTTAGATCAAAATTAAAATCCAAAA
1 AAGTAACTTCAGATCAAAACTAAAATCCAAAA
82516379 CAATGCTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.54, C:0.16, G:0.07, T:0.22
Consensus pattern (35 bp):
AAGTAACTTCAGATCAAAACTAAAATCCAAAAATC
Found at i:82521267 original size:27 final size:27
Alignment explanation
Indices: 82521175--82521324 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
82521165 ATATTGAGCC
* *
82521175 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
82521202 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
82521230 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
82521257 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
82521284 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
82521311 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82521325 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:82529281 original size:27 final size:27
Alignment explanation
Indices: 82529189--82529338 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
82529179 ATATTGAGCC
* *
82529189 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
82529216 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
82529244 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
82529271 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
82529298 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
82529325 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82529339 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:82538581 original size:23 final size:25
Alignment explanation
Indices: 82538551--82538634 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
82538541 CTTATTAGAG
* *
82538551 TATGCCACAAGGGCCA-AT-CATAA
1 TATGCCACAAAGGCAACATACATAA
*
82538574 TATGCCACAAAGGTAACATACATAA
1 TATGCCACAAAGGCAACATACATAA
* *
82538599 TATGCCACAAAGGTAATATACATAA
1 TATGCCACAAAGGCAACATACATAA
**
82538624 TACACCACAAA
1 TATGCCACAAA
82538635 AGCTAACAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
23 13 0.25
24 2 0.04
25 38 0.72
ACGTcount: A:0.46, C:0.23, G:0.12, T:0.19
Consensus pattern (25 bp):
TATGCCACAAAGGCAACATACATAA
Found at i:82538603 original size:25 final size:25
Alignment explanation
Indices: 82538569--82538634 Score: 105
Period size: 25 Copynumber: 2.6 Consensus size: 25
82538559 AAGGGCCAAT
82538569 CATAATATGCCACAAAGGTAACATA
1 CATAATATGCCACAAAGGTAACATA
*
82538594 CATAATATGCCACAAAGGTAATATA
1 CATAATATGCCACAAAGGTAACATA
**
82538619 CATAATACACCACAAA
1 CATAATATGCCACAAA
82538635 AGCTAACAGA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.20
Consensus pattern (25 bp):
CATAATATGCCACAAAGGTAACATA
Found at i:82541729 original size:30 final size:31
Alignment explanation
Indices: 82541666--82541730 Score: 89
Period size: 31 Copynumber: 2.1 Consensus size: 31
82541656 TATTAATCAT
* *
82541666 TGACTGTTTTGTTACTTTTTTATAACGTTAG
1 TGACTGTTTTGTTACTTTTTCATAAAGTTAG
82541697 TGACTGTTTTGTTA-TTTTTCA-AAAGTTGAG
1 TGACTGTTTTGTTACTTTTTCATAAAGTT-AG
82541727 TGAC
1 TGAC
82541731 AAAAATGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 5 0.16
30 12 0.39
31 14 0.45
ACGTcount: A:0.22, C:0.09, G:0.18, T:0.51
Consensus pattern (31 bp):
TGACTGTTTTGTTACTTTTTCATAAAGTTAG
Found at i:82547483 original size:18 final size:20
Alignment explanation
Indices: 82547447--82547493 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
82547437 ATTTGTAAGT
82547447 ATATATATGTGAATAATTTG
1 ATATATATGTGAATAATTTG
* *
82547467 ATAT-TATGTGATTATTTTG
1 ATATATATGTGAATAATTTG
82547486 ATGATATA
1 AT-ATATA
82547494 ACATGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 15 0.65
20 6 0.26
21 2 0.09
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
ATATATATGTGAATAATTTG
Found at i:82547964 original size:50 final size:50
Alignment explanation
Indices: 82547845--82548237 Score: 360
Period size: 50 Copynumber: 7.8 Consensus size: 50
82547835 GTTGTGAGAA
* * *** *
82547845 CACGTGTGTAGTACTATGTGCAGACTACTATGTGTTTAAGATAGTTTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT--TGTTAGGT
82547897 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * * * * *
82547947 CGCATGTGTAATACTAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TTAGGT
* * *
82547998 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
82548048 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA-GATTGTTAGGT
* * * * * * *
82548098 CGCATGTGTAGTATTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCA-AT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--GTT-AGGT
* * ** ** * * *
82548149 CACGTGTATAGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* *
82548199 CACGTATGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
82548238 AAGAGCTTTG
Statistics
Matches: 273, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
49 6 0.02
50 157 0.58
51 70 0.26
52 40 0.15
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:82548031 original size:28 final size:28
Alignment explanation
Indices: 82547999--82548082 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
82547989 AGTTTCGATC
82547999 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
82548027 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
82548049 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
82548077 ACGTGT
1 ACGTGT
82548083 ACAGGATTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:82548033 original size:101 final size:101
Alignment explanation
Indices: 82547896--82548077 Score: 301
Period size: 101 Copynumber: 1.8 Consensus size: 101
82547886 TAGTTTTAGG
* * *
82547896 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAATAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAATAC
82547961 TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
66 TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
* * *
82547997 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAATAC
*
82548062 TAAGTGCAGGCTACTA
66 TAAGTGCAAGCTACTA
82548078 CGTGTACAGG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
101 74 1.00
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.30
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCACATGTGTAATAC
TAAGTGCAAGCTACTATGCGTACCCGATAGTTTCGA
Found at i:82548125 original size:151 final size:151
Alignment explanation
Indices: 82547845--82548237 Score: 529
Period size: 151 Copynumber: 2.6 Consensus size: 151
82547835 GTTGTGAGAA
* * * * *
82547845 CACGTGTGTAGTACTATGTGCAGACTACTATGTGTTTAAGATAGTTTTAGGTCACGTGTGTAGTA
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGAT-G-GTTAGGTCACGTGTGTAGTA
* *
82547910 CTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGTCGCATGTGTAATACTAAGTGCAAGCTAC
64 CTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTAC
** *
82547975 TATGCGTACCCGA-TAGTTTCGAT
129 TATGCGTACCC-ATTAACTTCAAT
*
82547998 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACT
* * *
82548063 AAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGTCGCATGTGTAGTATTAAGTGCAGGCTACT
66 AAGTGCAGGCTACTACGTGTACCA-GATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACT
82548127 ATGCGTACCCATTAACTTCAAT
130 ATGCGTACCCATTAACTTCAAT
* * * * * * *
82548149 CACGTGTATAGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGTCACGTATGTAGTACT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACT
* *
82548214 AAGTGCAGGCTACTATGCGTACCA
66 AAGTGCAGGCTACTACGTGTACCA
82548238 AAGAGCTTTG
Statistics
Matches: 214, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
150 3 0.01
151 171 0.80
152 3 0.01
153 37 0.17
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (151 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATAAGATGGTTAGGTCACGTGTGTAGTACT
AAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGTAATACTAAGTGCAAGCTACTA
TGCGTACCCATTAACTTCAAT
Found at i:82548152 original size:101 final size:101
Alignment explanation
Indices: 82548047--82548236 Score: 274
Period size: 101 Copynumber: 1.9 Consensus size: 101
82548037 GATGGTTAGG
* * * * * *
82548047 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAGGATTGATAGGTCGCATGTGTAGTA
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACATGTATCA-GATGGATAAGTCACATATGTAGTA
*
82548111 TTAAGTGCAGGCTACTATGCGTACCCATTAACTTCAA
65 CTAAGTGCAGGCTACTATGCGTACCCATTAACTTCAA
* * *
82548148 TCACGTGTATAGTACTAAGTGTAGGCTACTACATGTATTAGATGGATAAGTCACGTATGTAGTAC
1 TCACGTGTATAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACATATGTAGTAC
82548213 TAAGTGCAGGCTACTATGCGTACC
66 TAAGTGCAGGCTACTATGCGTACC
82548237 AAAGAGCTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 77 0.99
102 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (101 bp):
TCACGTGTATAGTACTAAGTGCAGGCTACTACATGTATCAGATGGATAAGTCACATATGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCATTAACTTCAA
Found at i:82548460 original size:16 final size:16
Alignment explanation
Indices: 82548439--82548470 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
82548429 AGAATGGAGT
82548439 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
82548455 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
82548471 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:82549096 original size:180 final size:180
Alignment explanation
Indices: 82548794--82549133 Score: 554
Period size: 180 Copynumber: 1.9 Consensus size: 180
82548784 CATCCGAGAG
* * *
82548794 CTGTACCATGAGATAAATAATTTTTAGTGAAGAGAAGTCGGAACTGTCAAATAGTGAAATAGGGG
1 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAAGTCGGAACTATCAAATAGTGAAATAGGGG
* * *
82548859 TATCTTTAATGAATAAACTCTACTAATTGGATAAACTAAAAATTTTGAAAATTTTATGGTAAGAA
66 TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
* * * *
82548924 TATATGTGAGTCCAGTTTCTGGGAAAATTAGTGATTCTCAATTTGGAGTC
131 GATATATGAGTCCAGTTTCAGGAAAAATTAGTGATTCTCAATTTGGAGTC
* * *
82548974 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAGGTCGGAACTATTAGATAGTGAAATAGGGG
1 CTGTACCATGAAATAAATAATTTTTAATGAAGAGAAGTCGGAACTATCAAATAGTGAAATAGGGG
82549039 TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
66 TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
*
82549104 GATATATGAGTCTAGTTTCAGGAAAAATTA
131 GATATATGAGTCCAGTTTCAGGAAAAATTA
82549134 ACAAATCTTA
Statistics
Matches: 146, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
180 146 1.00
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (180 bp):
CTGTACCATGAAATAAATAATTTTTAATGAAGAGAAGTCGGAACTATCAAATAGTGAAATAGGGG
TATCTTTAATGAATAAACTATACTAATTGGATAAACCAAAAATTCTGAAAATTTTATGGTAAGAA
GATATATGAGTCCAGTTTCAGGAAAAATTAGTGATTCTCAATTTGGAGTC
Found at i:82551332 original size:28 final size:28
Alignment explanation
Indices: 82551301--82551463 Score: 122
Period size: 28 Copynumber: 5.8 Consensus size: 28
82551291 GAGTTTGCAT
82551301 GGACTA-TCTTTCAAGCAAGAGTCAGTAA
1 GGACTATTC-TTCAAGCAAGAGTCAGTAA
* *
82551329 GGACTATTCTTCAAGAAAGAGTACA-CATA
1 GGACTATTCTTCAAGCAAGAGT-CAGTA-A
* *
82551358 -GACTA-TCTTTCAAGAAAGAGTCCA-TAT
1 GGACTATTC-TTCAAGCAAGAGT-CAGTAA
**
82551385 GGACTA-TCTTTCAAGCAAGAGTTTGTAA
1 GGACTATTC-TTCAAGCAAGAGTCAGTAA
* * * * * *
82551413 TGATTATTCTTCAAGCAGGAGTCTGCAG
1 GGACTATTCTTCAAGCAAGAGTCAGTAA
82551441 GGACTATTCTTCAAGCAAGAGTC
1 GGACTATTCTTCAAGCAAGAGTC
82551464 CACAAGAACT
Statistics
Matches: 110, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
27 2 0.02
28 101 0.92
29 7 0.06
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (28 bp):
GGACTATTCTTCAAGCAAGAGTCAGTAA
Found at i:82551446 original size:84 final size:84
Alignment explanation
Indices: 82551299--82551465 Score: 212
Period size: 84 Copynumber: 2.0 Consensus size: 84
82551289 AAGAGTTTGC
*
82551299 ATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTACACATAGACTA-
1 ATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTACACAGAGACTAT
82551363 TCTTTCAAGAAAGAGTCCAT
66 TC-TTCAAGAAAGAGTCCAT
** * * * * * *
82551383 ATGGACTATCTTTCAAGCAAGAGTTTGTAATGATTATTCTTCAAGCAGGAGT-CTGCAGGGACTA
1 ATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTAC-ACAGAGACTA
*
82551447 TTCTTCAAGCAAGAGTCCA
65 TTCTTCAAGAAAGAGTCCA
82551466 CAAGAACTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
83 1 0.01
84 68 0.96
85 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (84 bp):
ATGGACTATCTTTCAAGCAAGAGTCAGTAAGGACTATTCTTCAAGAAAGAGTACACAGAGACTAT
TCTTCAAGAAAGAGTCCAT
Found at i:82553406 original size:13 final size:13
Alignment explanation
Indices: 82553388--82553416 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
82553378 AAAGGTTTAG
82553388 CCTGGATTGATAA
1 CCTGGATTGATAA
82553401 CCTGGATTGATAA
1 CCTGGATTGATAA
82553414 CCT
1 CCT
82553417 TATATGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (13 bp):
CCTGGATTGATAA
Found at i:82556948 original size:27 final size:27
Alignment explanation
Indices: 82556917--82556986 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
82556907 TCAGTAGTAG
*
82556917 AGGAGTCCACAGGACATTCCACAATAT
1 AGGAGTCCGCAGGACATTCCACAATAT
* * * * * *
82556944 CGGAGTTCGTAGGACATTTCGCAGTAT
1 AGGAGTCCGCAGGACATTCCACAATAT
82556971 AGGAGTCCGCAGGACA
1 AGGAGTCCGCAGGACA
82556987 GTCTATTGTT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.30, C:0.23, G:0.27, T:0.20
Consensus pattern (27 bp):
AGGAGTCCGCAGGACATTCCACAATAT
Found at i:82558467 original size:45 final size:45
Alignment explanation
Indices: 82558402--82558573 Score: 211
Period size: 45 Copynumber: 3.8 Consensus size: 45
82558392 TTGGGTGACA
*
82558402 TGTGAGCCAGTGTAAAACCATGTTGGACATGGCATCGACATTGAT
1 TGTGAGCCAGTGTAAAACCATGTTGGACATGGCATCGACAGTGAT
* * **
82558447 TGTGACCCAGTGTAAGACCATGTTGGACATGGCATC-AGGGTGAT
1 TGTGAGCCAGTGTAAAACCATGTTGGACATGGCATCGACAGTGAT
* **
82558491 TGTGGGCCAGTGTAAAACCATGTTGGACATGGCATCGGTAGTGAT
1 TGTGAGCCAGTGTAAAACCATGTTGGACATGGCATCGACAGTGAT
* * *
82558536 ATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1 -TGTGAGCCAGTGTAAAACCATGT-T-GGACATGGCAT
82558574 TGGCCACAAC
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
44 38 0.35
45 39 0.36
46 20 0.18
47 1 0.01
48 11 0.10
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.27
Consensus pattern (45 bp):
TGTGAGCCAGTGTAAAACCATGTTGGACATGGCATCGACAGTGAT
Found at i:82563319 original size:9 final size:9
Alignment explanation
Indices: 82563305--82563335 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
82563295 TTAATAGATG
82563305 CTCAAAAGT
1 CTCAAAAGT
82563314 CTCAAAAGT
1 CTCAAAAGT
*
82563323 CTCAAAAAT
1 CTCAAAAGT
82563332 CTCA
1 CTCA
82563336 CAAAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.45, C:0.26, G:0.06, T:0.23
Consensus pattern (9 bp):
CTCAAAAGT
Found at i:82564054 original size:6 final size:6
Alignment explanation
Indices: 82564043--82564117 Score: 78
Period size: 6 Copynumber: 11.7 Consensus size: 6
82564033 TAAAATCTAC
**
82564043 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAGTTTTAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA---AAAA TAAAAA
*
82564094 TAAAAA CATAAAA TAATAAA TAAA
1 TAAAAA TA-AAAA TAA-AAA TAAA
82564118 TGTTTTTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
6 43 0.74
7 11 0.19
9 4 0.07
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.23
Consensus pattern (6 bp):
TAAAAA
Found at i:82565382 original size:21 final size:20
Alignment explanation
Indices: 82565337--82565376 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
82565327 AGCTTGTAAT
82565337 ATAAAGAATAATAATAATAG
1 ATAAAGAATAATAATAATAG
*
82565357 ATAAACGAATAATGATAATA
1 ATAAA-GAATAATAATAATA
82565377 AGTAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (20 bp):
ATAAAGAATAATAATAATAG
Found at i:82567112 original size:496 final size:496
Alignment explanation
Indices: 82566172--82567163 Score: 1761
Period size: 496 Copynumber: 2.0 Consensus size: 496
82566162 CATGTCGCAC
*
82566172 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCTTGTTTTCACAAGGCCATAA
1 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCCTGTTTTCACAAGGCCATAA
* *
82566237 GCACGCCCTTGTGCTTGGCCATGTCTCTATGGAAAACCTATATTCAAGTGTTCTGTTAGTAAGTT
66 GCACGCCCTTGTGCTTGGCCATGTCTCTATGGAAAACCTATATTCAAGTGTTATATTAGTAAGTT
82566302 AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCAGGTTACCTCCCGAGAACC
131 AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCAGGTTACCTCCCGAGAACC
*
82566367 GCTTATTTATAGTCTATGCTCGACTTACCTCTTCCTTGAATGATCATGGTGGTTTGAGGAGTTTA
196 ACTTATTTATAGTCTATGCTCGACTTACCTCTTCCTTGAATGATCATGGTGGTTTGAGGAGTTTA
* *
82566432 TACTCCTTATTCTTGCTATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAAA
261 CACTCCTTATTCTTACTATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAAA
* *
82566497 AGTGCCGAACTTGGGATGACTCACGTCGACCGTATCGAATGGGAAAATGTTGAGTACCGTAAGAG
326 AGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGAG
* *
82566562 GGATTTCTTCATTTGGTGTGGTAGCGACAATGTGGGGATCTGCGGCATCGAATAAGACTCTATCT
391 GGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATCT
82566627 CCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
456 CCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
* *
82566668 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTTCCCTGTTTTCACACGGCCATAA
1 GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCCTGTTTTCACAAGGCCATAA
* *
82566733 GCACGCCCTTGTGCTTGGCCGTGTCTCTGTGGAAAACCTATATTCAAGTGTTATATTAGTAAGTT
66 GCACGCCCTTGTGCTTGGCCATGTCTCTATGGAAAACCTATATTCAAGTGTTATATTAGTAAGTT
* * * *
82566798 AGATGTCGAATACTAAATTTTAAATAATTTAATACAGTTAGTGCTCGGGTTACCTCCCGAGAACT
131 AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCAGGTTACCTCCCGAGAACC
* *
82566863 ACTTATTTATAGTTTATGCTCGACTTACCTC-TCCATTGAATGGTCATGGTGGTTTGAGGAGTTT
196 ACTTATTTATAGTCTATGCTCGACTTACCTCTTCC-TTGAATGATCATGGTGGTTTGAGGAGTTT
82566927 ACACTCCTTATTCTTACTATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAA
260 ACACTCCTTATTCTTACTATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAA
** *
82566992 AAGTGTTGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACTGTAAGA
325 AAGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGA
82567057 GGGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATC
390 GGGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATC
82567122 TCCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
455 TCCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
82567164 TCGTAGATTC
Statistics
Matches: 472, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
495 3 0.01
496 469 0.99
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (496 bp):
GGCCGTGGCATTTTATCATAGCCCGTGTTTGGGGGAACCGTTGCCCTGTTTTCACAAGGCCATAA
GCACGCCCTTGTGCTTGGCCATGTCTCTATGGAAAACCTATATTCAAGTGTTATATTAGTAAGTT
AGATGTCAAATACTAAATTTTAAAGAATTTAATACAGTTAGTGCTCAGGTTACCTCCCGAGAACC
ACTTATTTATAGTCTATGCTCGACTTACCTCTTCCTTGAATGATCATGGTGGTTTGAGGAGTTTA
CACTCCTTATTCTTACTATCAATCTCATCAAAATAAGGTTTTAAACGTGTGTTGTTTACCTTAAA
AGTGCCGAACTTGGGATGACTCACCTCGACCGTACCGAATGGGAAAATGTTGAGTACCGTAAGAG
GGATTTCTTCATTTGGTGCGGTAGCGACAATGTGGGGATCTGCGGCAGCGAATAAGACTCTATCT
CCAACCTTAAGTTGATTTGGAAAGGTATTGAGCTCGTTCTG
Found at i:82572701 original size:43 final size:43
Alignment explanation
Indices: 82572653--82572809 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
82572643 AGCTCGTACA
* *
82572653 ATGCCAATGTCCTAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* * *
82572696 ATGCCATTGTCCCAGACAG-GGTCTTACACGAAATCAAGTAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * * * *
82572738 ATGCCAACGTCCCATACGCGGTGTTACACGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
*
82572782 ATGCCAAAGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
82572810 TGATAACATA
Statistics
Matches: 93, Mismatches: 16, Indels: 9
0.79 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 25 0.27
43 40 0.43
44 27 0.29
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:82577459 original size:15 final size:15
Alignment explanation
Indices: 82577427--82577455 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
82577417 ATTTTCTGTG
82577427 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
82577442 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
82577456 ATTTTCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:82578619 original size:34 final size:34
Alignment explanation
Indices: 82578570--82578640 Score: 115
Period size: 34 Copynumber: 2.1 Consensus size: 34
82578560 TATGTCATGA
*
82578570 CATACGATTCCGATATGTGATGTGCGAGTAAGAC
1 CATAAGATTCCGATATGTGATGTGCGAGTAAGAC
* *
82578604 CATAAGATTCTGATATGTGATGTGTGAGTAAGAC
1 CATAAGATTCCGATATGTGATGTGCGAGTAAGAC
82578638 CAT
1 CAT
82578641 GGCGTCGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.30
Consensus pattern (34 bp):
CATAAGATTCCGATATGTGATGTGCGAGTAAGAC
Found at i:82580638 original size:46 final size:45
Alignment explanation
Indices: 82580579--82580751 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
82580569 ATCTTGTAGT
82580579 CGATGCATGTCCCAGACATGTCTTACACTAGCTTACGTCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT-CGTCTCGAGGC
* * * *
82580625 CGATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC-TTCGTCTCGAGGC
* * * * *
82580671 CGATGCCATGTCCCAGACATAGTCTTACATTGGCTCTCATAAT-GTGGC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-TCGT-CTCGAGGC
*
82580719 CGATGCATGTTCCAGACATGTCTTACACTAGCT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT
82580752 CACACAAGTG
Statistics
Matches: 106, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 57 0.54
47 27 0.25
48 21 0.20
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCGTCTCGAGGC
Found at i:82580697 original size:94 final size:92
Alignment explanation
Indices: 82580579--82580750 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 92
82580569 ATCTTGTAGT
* *
82580579 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TACGT-CTCGAGGCCGATGCATGTCCCAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATAAT-GAGGCCGATGCATGTCCCAAAC
82580642 ATGTCTTACACTAGCACTCGTCTCAATGC
64 ATGTCTTACACTAGCACTCGTCTCAATGC
* * * * *
82580671 CGATGCCATGTCCCAGACATAGTCTTACATTGGCTCTCATAATGTGGCCGATGCATGTTCCAGAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAAAC
82580736 ATGTCTTACACTAGC
64 ATGTCTTACACTAGC
82580751 TCACACAAGT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
92 5 0.07
93 14 0.20
94 48 0.70
95 2 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATGAGGCCGATGCATGTCCCAAACAT
GTCTTACACTAGCACTCGTCTCAATGC
Found at i:82585801 original size:46 final size:46
Alignment explanation
Indices: 82585751--82585879 Score: 224
Period size: 46 Copynumber: 2.8 Consensus size: 46
82585741 TGGTTGAGCA
82585751 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
82585797 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
82585843 -CCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82585880 GCGGGTTACA
Statistics
Matches: 80, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
45 2 0.03
46 78 0.98
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82591076 original size:46 final size:46
Alignment explanation
Indices: 82590971--82591143 Score: 176
Period size: 46 Copynumber: 3.7 Consensus size: 46
82590961 ATATCTGTGT
* * *
82590971 CGATGCTATGTCCCAGACATGGTCTTACACTGAC--ACATCTCATAGC
1 CGATGC-ATGTCCCAGACATAGTCTTACACTGGCTTACGTCTCA-AGC
* *
82591017 CGGTGCATGTCCTAGACAT-GTCTTACACTGGCTTACGTCTCGAAGC
1 CGATGCATGTCCCAGACATAGTCTTACACTGGCTTACGTCTC-AAGC
* * * *
82591063 TGATGCATGTCCTAGACAT-GTCTTACACTAGCACT-CGTCTCAATGC
1 CGATGCATGTCCCAGACATAGTCTTACACTGGC-TTACGTCTCAA-GC
82591109 CGATGCCATGTCCCAGACATAGTCTTACACTGGCT
1 CGATG-CATGTCCCAGACATAGTCTTACACTGGCT
82591144 CTCATAATGT
Statistics
Matches: 108, Mismatches: 12, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
44 12 0.11
45 14 0.13
46 55 0.51
47 15 0.14
48 12 0.11
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATAGTCTTACACTGGCTTACGTCTCAAGC
Found at i:82591166 original size:94 final size:91
Alignment explanation
Indices: 82590918--82591193 Score: 263
Period size: 94 Copynumber: 2.9 Consensus size: 91
82590908 TGGGTGCAGG
** * *
82590918 TGCCGATGCCATGTCCTAGACATGGTCTTACACAAGCTTTAGCATATCTGTGTCGATGCTATGTC
1 TGCCGATGCCATGTCCTAGACAT-GTCTTACACTGGC-TTA-CATATGTG-GCCGATGC-ATGTC
82590983 CCAGACATGGTCTTACACT-G-ACACATCTCA
61 CCAGACAT-GTCTTACACTAGCACACATCTCA
* * * ** * *
82591013 TAGCCGGTG-CATGTCCTAGACATGTCTTACACTGGCTTACGTCTCGAAGCTGATGCATGTCCTA
1 T-GCCGATGCCATGTCCTAGACATGTCTTACACTGGCTTACATAT-GTGGCCGATGCATGTCCCA
* *
82591077 GACATGTCTTACACTAGCACTCGTCTCAA
64 GACATGTCTTACACTAGCACACATCTC-A
* *
82591106 TGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTCT-CATAATGTGGCCGATACATGTCCC
1 TGCCGATGCCATGTCCTAGACAT-GTCTTACACTGGCT-TACAT-ATGTGGCCGATGCATGTCCC
* *
82591170 AGACATGTCTTATACTAGCTCACA
63 AGACATGTCTTACACTAGCACACA
82591194 CAAGTGACCC
Statistics
Matches: 146, Mismatches: 26, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
90 10 0.07
91 13 0.09
92 22 0.15
93 18 0.12
94 60 0.41
95 17 0.12
96 6 0.04
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (91 bp):
TGCCGATGCCATGTCCTAGACATGTCTTACACTGGCTTACATATGTGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACACATCTCA
Found at i:82595773 original size:6 final size:6
Alignment explanation
Indices: 82595533--82595759 Score: 364
Period size: 6 Copynumber: 37.8 Consensus size: 6
82595523 TAGGAAAACA
* * * * * * * *
82595533 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
* *
82595581 AAATAA AAATAA AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
82595629 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
82595677 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG AAATAG
82595725 AAATAG AAATAG AAATAG AAATAG AAATAG AAATA
1 AAATAG AAATAG AAATAG AAATAG AAATAG AAATA
82595760 AATATAAATA
Statistics
Matches: 220, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 220 1.00
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (6 bp):
AAATAG
Found at i:82595780 original size:22 final size:22
Alignment explanation
Indices: 82595593--82595780 Score: 178
Period size: 24 Copynumber: 8.0 Consensus size: 22
82595583 ATAAAAATAA
*
82595593 AAATAGAAATAGAAATAGAAAT
1 AAATAGAAATAGAAAGAGAAAT
*
82595615 AGAAATAGAAATAGAAATAGAAAT
1 --AAATAGAAATAGAAAGAGAAAT
*
82595639 AGAAATAGAAATAGAAATAGAAAT
1 --AAATAGAAATAGAAAGAGAAAT
*
82595663 AGAAATAGAAATAGAAATAGAAAT
1 --AAATAGAAATAGAAAGAGAAAT
*
82595687 AGAAATAGAAATAGAAATAGAAAT
1 --AAATAGAAATAGAAAGAGAAAT
*
82595711 AGAAATAGAAATAGAAATAGAAAT
1 --AAATAGAAATAGAAAGAGAAAT
*
82595735 AGAAATAGAAATAGAAATAGAAAT
1 --AAATAGAAATAGAAAGAGAAAT
* * *
82595759 AAATATAAATATAAAGATAAAT
1 AAATAGAAATAGAAAGAGAAAT
82595781 GGACTCAATG
Statistics
Matches: 160, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
22 18 0.11
24 142 0.89
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (22 bp):
AAATAGAAATAGAAAGAGAAAT
Found at i:82597360 original size:3 final size:3
Alignment explanation
Indices: 82597344--82597383 Score: 62
Period size: 3 Copynumber: 13.3 Consensus size: 3
82597334 CTAAAAAGAC
* *
82597344 TAA TAA TGA CAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
82597384 TGGAAAGGGA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:82602198 original size:62 final size:63
Alignment explanation
Indices: 82602128--82602261 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
82602118 GTCTTAGATG
82602128 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGC-A
1 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
82602190 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
1 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
*
82602253 AGTTGTAAA
1 AGTTATAAA
82602262 ATAAGTGTAA
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 61 0.87
63 9 0.13
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.32
Consensus pattern (63 bp):
AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
Found at i:82602868 original size:50 final size:50
Alignment explanation
Indices: 82602722--82602858 Score: 211
Period size: 50 Copynumber: 2.7 Consensus size: 50
82602712 ATATGAGATT
* *
82602722 CCATGTAAGACCATGTTTGAGACATGACATTGGCATCGATATGTGTGATC
1 CCATGTAAGACCATGTCTGAGACATGACATTGGCATCGATATGTGTGAAC
*
82602772 CCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATATGTGTGAAC
1 CCATGTAAGACCATGTCTGAGACATGACATTGGCATCGATATGTGTGAAC
* * * *
82602822 CCATTTAAGACCATATCTGGGATATGACATTGGCATC
1 CCATGTAAGACCATGTCTGAGACATGACATTGGCATC
82602859 TTACTGTGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.28
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGAGACATGACATTGGCATCGATATGTGTGAAC
Found at i:82605675 original size:48 final size:48
Alignment explanation
Indices: 82605623--82605714 Score: 150
Period size: 48 Copynumber: 1.9 Consensus size: 48
82605613 CAGTGCAAGT
*
82605623 GATATGTGTGCTAGTGTAAGACATGTCT-GGAACATGCATCAGCCTCGA
1 GATATGTGTGCTAGTGTAAGACAAGTCTAGG-ACATGCATCAGCCTCGA
*
82605671 GATATGTGTGCTAGTGTAAGACAAGTCTAGGACATGTATCAGCC
1 GATATGTGTGCTAGTGTAAGACAAGTCTAGGACATGCATCAGCC
82605715 ACATCGTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
48 39 0.95
49 2 0.05
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
GATATGTGTGCTAGTGTAAGACAAGTCTAGGACATGCATCAGCCTCGA
Found at i:82606882 original size:10 final size:11
Alignment explanation
Indices: 82606867--82606917 Score: 59
Period size: 11 Copynumber: 4.6 Consensus size: 11
82606857 CAAGTAAGTT
82606867 AAAAAAA-TCG
1 AAAAAAATTCG
*
82606877 AAAAAAATTCA
1 AAAAAAATTCG
*
82606888 AAAAAAATTTG
1 AAAAAAATTCG
*
82606899 AAAAAAAATTTG
1 -AAAAAAATTCG
82606911 AAAAAAA
1 AAAAAAA
82606918 AATTTGAACA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
10 7 0.19
11 18 0.50
12 11 0.31
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.18
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:82606883 original size:11 final size:12
Alignment explanation
Indices: 82606867--82606918 Score: 65
Period size: 12 Copynumber: 4.6 Consensus size: 12
82606857 CAAGTAAGTT
82606867 AAAAAAA-TCG-
1 AAAAAAATTCGA
82606877 AAAAAAATTC-A
1 AAAAAAATTCGA
*
82606888 AAAAAAATTTGA
1 AAAAAAATTCGA
*
82606900 AAAAAAATTTGA
1 AAAAAAATTCGA
82606912 AAAAAAA
1 AAAAAAA
82606919 ATTTGAACAT
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
10 7 0.18
11 11 0.29
12 20 0.53
ACGTcount: A:0.73, C:0.04, G:0.06, T:0.17
Consensus pattern (12 bp):
AAAAAAATTCGA
Found at i:82606903 original size:13 final size:13
Alignment explanation
Indices: 82606887--82606925 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
82606877 AAAAAAATTC
82606887 AAAAAAAATTTG-
1 AAAAAAAATTTGA
82606899 AAAAAAAATTTGA
1 AAAAAAAATTTGA
82606912 AAAAAAAATTTGA
1 AAAAAAAATTTGA
82606925 A
1 A
82606926 CATTGTTTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (13 bp):
AAAAAAAATTTGA
Found at i:82613101 original size:40 final size:40
Alignment explanation
Indices: 82613031--82613208 Score: 261
Period size: 40 Copynumber: 4.5 Consensus size: 40
82613021 AAACCAAGTA
* * ** *
82613031 CCTTCAGGATTTAG-CCGGATATAGCT-ACTCGTTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
82613070 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
82613110 CCTTCGGGACTTAGCCCGGATATAGTGACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
82613150 CCTTCGGGACTTAGCCCGAATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
82613190 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
82613209 TTGTCATCCG
Statistics
Matches: 127, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.10
40 114 0.90
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:82614475 original size:24 final size:24
Alignment explanation
Indices: 82614448--82614493 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
82614438 CACCCCCCAA
82614448 TTTTCATTATT-TTATTACTAACCC
1 TTTTCATT-TTATTATTACTAACCC
* *
82614472 TTTTTATTTTATTATTTCTAAC
1 TTTTCATTTTATTATTACTAAC
82614494 ATAAAGCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTCATTTTATTATTACTAACCC
Found at i:82618625 original size:62 final size:63
Alignment explanation
Indices: 82618528--82618661 Score: 252
Period size: 62 Copynumber: 2.1 Consensus size: 63
82618518 GTCTTAGATG
82618528 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGC-A
1 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
82618590 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
1 AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
*
82618653 AGTTGTAAA
1 AGTTATAAA
82618662 ATAAGTGTAA
Statistics
Matches: 70, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
62 61 0.87
63 9 0.13
ACGTcount: A:0.41, C:0.10, G:0.16, T:0.32
Consensus pattern (63 bp):
AGTTATAAACAACTTTTATGAAGGAAATTTGCTTGAAAACACCTAAAAAGGGTTATTTTGCAA
Found at i:82619268 original size:50 final size:50
Alignment explanation
Indices: 82619122--82619258 Score: 211
Period size: 50 Copynumber: 2.7 Consensus size: 50
82619112 ATATGAGATT
* * *
82619122 CCATGTAAGACCATGTTTGAGACATGACATTGGCATCGATATGTGTGATC
1 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
*
82619172 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGTGTGAAC
1 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
* * *
82619222 CCATTTAAGACCATATCTGGGATATGACATTGGCATC
1 CCATGTAAGACCATGTCTGGGACATGACATTGGCATC
82619259 TTACTGTGTG
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 79 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGAAC
Found at i:82624165 original size:29 final size:29
Alignment explanation
Indices: 82624123--82624178 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
82624113 TCAAAGTACA
82624123 TAAAGCAAATAAGGACTTTCGACTCAACG
1 TAAAGCAAATAAGGACTTTCGACTCAACG
82624152 TAAAGCAAATAAGGACTTTCGACTCAA
1 TAAAGCAAATAAGGACTTTCGACTCAA
82624179 AGCATCAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (29 bp):
TAAAGCAAATAAGGACTTTCGACTCAACG
Found at i:82627111 original size:3 final size:3
Alignment explanation
Indices: 82627098--82627205 Score: 68
Period size: 3 Copynumber: 38.0 Consensus size: 3
82627088 TTCCATTTTC
* * * * *
82627098 TCT TAT TCT TCT TCT CCT TC- TCT TCC TCT TGT TCT TAT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* * * *
82627145 TC- TCC TCC TCT TCT TTT TCT T-T TCT GT-T TCT TC- TCT TGT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT TCT TCT
*
82627187 T-T TTT TC- TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT
82627206 ACTGCCTAGG
Statistics
Matches: 81, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
2 13 0.16
3 67 0.83
4 1 0.01
ACGTcount: A:0.02, C:0.31, G:0.03, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:82627132 original size:26 final size:26
Alignment explanation
Indices: 82627097--82627187 Score: 78
Period size: 29 Copynumber: 3.4 Consensus size: 26
82627087 CTTCCATTTT
* *
82627097 CTCTTATTCTTCTTCTCCTTCTCTTC
1 CTCTTGTTCTTCTTCTTCTTCTCTTC
*
82627123 CTCTTGTTCTTATTCTTCTTCTTCTCCTC
1 CTCTTGTTC---TTCTTCTTCTTCTCTTC
* * *
82627152 CTCTTCTTTTTCTT-TTCTGTTTCTT-
1 CTCTTGTTCTTCTTCTTCT-TCTCTTC
82627177 CTCTTGTTCTT
1 CTCTTGTTCTT
82627188 TTTTTCTCTT
Statistics
Matches: 52, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
25 13 0.25
26 17 0.33
29 22 0.42
ACGTcount: A:0.02, C:0.32, G:0.03, T:0.63
Consensus pattern (26 bp):
CTCTTGTTCTTCTTCTTCTTCTCTTC
Found at i:82627194 original size:16 final size:15
Alignment explanation
Indices: 82627153--82627203 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
82627143 CTTCTCCTCC
*
82627153 TCTTCTTTT-TCTTT
1 TCTTTTTTTCTCTTT
*
82627167 TCTGTTTCTTCTCTTGT
1 TCT-TTTTTTCTCTT-T
82627184 TCTTTTTTTCTCTTCT
1 TCTTTTTTTCTCTT-T
82627200 TCTT
1 TCTT
82627204 CTACTGCCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 3 0.10
15 4 0.13
16 19 0.63
17 4 0.13
ACGTcount: A:0.00, C:0.24, G:0.04, T:0.73
Consensus pattern (15 bp):
TCTTTTTTTCTCTTT
Found at i:82627205 original size:11 final size:11
Alignment explanation
Indices: 82627103--82627205 Score: 54
Period size: 11 Copynumber: 9.4 Consensus size: 11
82627093 TTTTCTCTTA
82627103 TTCTTCTTCTCC
1 TTCTTCTTCT-C
82627115 TTC-TCTTCCTC
1 TTCTTCTT-CTC
* *
82627126 TTGTTCTTATTC
1 TTCTTCTT-CTC
82627138 TTCTTCTTCTC
1 TTCTTCTTCTC
* *
82627149 CTCCTCTTCT-
1 TTCTTCTTCTC
*
82627159 TT-TTCTTTTC
1 TTCTTCTTCTC
82627169 TGT-TTCTTCTC
1 T-TCTTCTTCTC
* * *
82627180 TTGTTCTTTTT
1 TTCTTCTTCTC
82627191 TTC-TCTTCTTC
1 TTCTTCTTC-TC
82627202 TTCT
1 TTCT
82627206 ACTGCCTAGG
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
9 5 0.07
10 7 0.10
11 38 0.56
12 18 0.26
ACGTcount: A:0.01, C:0.31, G:0.03, T:0.65
Consensus pattern (11 bp):
TTCTTCTTCTC
Found at i:82627614 original size:22 final size:22
Alignment explanation
Indices: 82627586--82627627 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
82627576 CACTGGTCAC
82627586 GGCTTGGGAAAGGGAAAAATGA
1 GGCTTGGGAAAGGGAAAAATGA
*
82627608 GGCTTGGGAAAGGGAGAAAT
1 GGCTTGGGAAAGGGAAAAAT
82627628 AACCAAGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.43, T:0.14
Consensus pattern (22 bp):
GGCTTGGGAAAGGGAAAAATGA
Found at i:82628592 original size:23 final size:24
Alignment explanation
Indices: 82628565--82628612 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
82628555 ATTGGGATAA
82628565 AAATGGTTTTG-AAAAAATAAATG
1 AAATGGTTTTGAAAAAAATAAATG
82628588 AAATGGTTTTGAAAAAAATAAATG
1 AAATGGTTTTGAAAAAAATAAATG
82628612 A
1 A
82628613 TCGACTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 11 0.46
24 13 0.54
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (24 bp):
AAATGGTTTTGAAAAAAATAAATG
Found at i:82629728 original size:45 final size:45
Alignment explanation
Indices: 82629671--82629776 Score: 185
Period size: 45 Copynumber: 2.4 Consensus size: 45
82629661 AACTTAATTT
*
82629671 TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGCAAA
1 TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
*
82629716 TATTTGGCTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
1 TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
*
82629761 TGTTTGACTTAATTTT
1 TATTTGACTTAATTTT
82629777 ATTTGAAAGC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.51
Consensus pattern (45 bp):
TATTTGACTTAATTTTCAAGTTTGTATTAATTTAATTATAGAAAA
Found at i:82633481 original size:24 final size:22
Alignment explanation
Indices: 82633442--82633497 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
82633432 CGGGTTGATG
* * *
82633442 ACACGGGTGTGTCATATCAACC
1 ACACGGGCGTGTCACATAAACC
* *
82633464 ACATGGGCGTGTCACATAAGCC
1 ACACGGGCGTGTCACATAAACC
82633486 ACACGGGCGTGT
1 ACACGGGCGTGT
82633498 GATACTATTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.27, G:0.29, T:0.20
Consensus pattern (22 bp):
ACACGGGCGTGTCACATAAACC
Found at i:82640312 original size:29 final size:29
Alignment explanation
Indices: 82640268--82640327 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
82640258 GGTTAGGTAC
82640268 AAAGTAACTAGCGTCTCAGCATCCGAGCT
1 AAAGTAACTAGCGTCTCAGCATCCGAGCT
*
82640297 AAAGTAACTAGTGTCTCAGCATCCGAGCT
1 AAAGTAACTAGCGTCTCAGCATCCGAGCT
82640326 AA
1 AA
82640328 CTCCCGAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (29 bp):
AAAGTAACTAGCGTCTCAGCATCCGAGCT
Found at i:82641195 original size:19 final size:19
Alignment explanation
Indices: 82641168--82641207 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
82641158 CAAATCTCAA
*
82641168 ATTACAAAAA-AAAATTATT
1 ATTAAAAAAATAAAATT-TT
82641187 ATTAAAAAAATAAAATTTT
1 ATTAAAAAAATAAAATTTT
82641206 AT
1 AT
82641208 GTATCGAGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTAAAAAAATAAAATTTT
Found at i:82641344 original size:18 final size:18
Alignment explanation
Indices: 82641302--82641342 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
82641292 AATAGATGCA
*
82641302 ATAATATGAGCAAAAATT
1 ATAAAATGAGCAAAAATT
*
82641320 ATAAAATGAGCAAAGA-T
1 ATAAAATGAGCAAAAATT
82641337 ATAAAA
1 ATAAAA
82641343 ATAAGATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.61, C:0.05, G:0.12, T:0.22
Consensus pattern (18 bp):
ATAAAATGAGCAAAAATT
Found at i:82641601 original size:14 final size:14
Alignment explanation
Indices: 82641582--82641665 Score: 57
Period size: 14 Copynumber: 5.9 Consensus size: 14
82641572 TAACGATACT
82641582 AATAGATAAATATA
1 AATAGATAAATATA
*
82641596 AATAG--AGATAT-
1 AATAGATAAATATA
*
82641607 AATACATAAAATATAA
1 AATAGAT-AAATAT-A
* *
82641623 TAATAACAAAAATATA
1 -AAT-AGATAAATATA
82641639 AATAGATAAATAATA
1 AATAGATAAAT-ATA
*
82641654 ATTAGATAAATA
1 AATAGATAAATA
82641666 ATAATAGTAC
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
11 4 0.07
12 5 0.09
14 17 0.31
15 16 0.29
16 1 0.02
17 9 0.16
18 3 0.05
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.27
Consensus pattern (14 bp):
AATAGATAAATATA
Found at i:82641625 original size:17 final size:17
Alignment explanation
Indices: 82641605--82641639 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
82641595 AAATAGAGAT
82641605 ATAAT-ACATAAAATATA
1 ATAATAACA-AAAATATA
82641622 ATAATAACAAAAATATA
1 ATAATAACAAAAATATA
82641639 A
1 A
82641640 ATAGATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.82
18 3 0.18
ACGTcount: A:0.69, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAATAACAAAAATATA
Found at i:82641638 original size:43 final size:41
Alignment explanation
Indices: 82641589--82641669 Score: 108
Period size: 43 Copynumber: 1.9 Consensus size: 41
82641579 ACTAATAGAT
*
82641589 AAATATAAATAGAGATATAATACATAAAATATAATAATAACAA
1 AAATATAAATAGAGAAATAATA-ATAAAATA-AATAATAACAA
* * *
82641632 AAATATAAATAGATAAATAATAATTAGATAAATAATAA
1 AAATATAAATAGAGAAATAATAATAAAATAAATAATAA
82641670 TAGTACTAGA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 8 0.24
42 6 0.18
43 20 0.59
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.27
Consensus pattern (41 bp):
AAATATAAATAGAGAAATAATAATAAAATAAATAATAACAA
Found at i:82641654 original size:15 final size:15
Alignment explanation
Indices: 82641582--82641669 Score: 69
Period size: 15 Copynumber: 6.1 Consensus size: 15
82641572 TAACGATACT
82641582 AATAGATAAAT-ATA
1 AATAGATAAATAATA
* *
82641596 AATAGAGATATAATA
1 AATAGATAAATAATA
*
82641611 CATA-A-AATATAAT-
1 AATAGATAA-ATAATA
* *
82641624 AATA-ACAAAAATATA
1 AATAGATAAATA-ATA
82641639 AATAGATAAATAATA
1 AATAGATAAATAATA
*
82641654 ATTAGATAAATAATA
1 AATAGATAAATAATA
82641669 A
1 A
82641670 TAGTACTAGA
Statistics
Matches: 59, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
13 7 0.12
14 19 0.32
15 28 0.47
16 5 0.08
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (15 bp):
AATAGATAAATAATA
Found at i:82641744 original size:3 final size:3
Alignment explanation
Indices: 82641706--82641733 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
82641696 AGATGGAAAT
82641706 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
82641734 GACTATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:82642934 original size:22 final size:22
Alignment explanation
Indices: 82642904--82642946 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
82642894 TGGGCTGCCT
*
82642904 GTTTTGGGTTTAATTTAGTTGG
1 GTTTGGGGTTTAATTTAGTTGG
* *
82642926 GTTTGGGGTTTAGTTTGGTTG
1 GTTTGGGGTTTAATTTAGTTG
82642947 CTTGGTTTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.09, C:0.00, G:0.37, T:0.53
Consensus pattern (22 bp):
GTTTGGGGTTTAATTTAGTTGG
Found at i:82643692 original size:30 final size:30
Alignment explanation
Indices: 82643658--82643765 Score: 94
Period size: 30 Copynumber: 3.6 Consensus size: 30
82643648 AGCTTACTCC
* *
82643658 TAGCTCATTTTCAACTCACGAGCTAAACCT
1 TAGCTCATTTTCAGCTCAAGAGCTAAACCT
** * * * *
82643688 TAGCTCAACTTCAGCTTAGGAGTTTAACCT
1 TAGCTCATTTTCAGCTCAAGAGCTAAACCT
* * *
82643718 TAGCTCAACTTT-AGCTCAAGGGCTAAAGCT
1 TAGCTC-ATTTTCAGCTCAAGAGCTAAACCT
82643748 TAGCTCATTTT-AGCTCAA
1 TAGCTCATTTTCAGCTCAA
82643766 ACCCAATTTT
Statistics
Matches: 61, Mismatches: 16, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
29 11 0.18
30 47 0.77
31 3 0.05
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (30 bp):
TAGCTCATTTTCAGCTCAAGAGCTAAACCT
Found at i:82645441 original size:13 final size:12
Alignment explanation
Indices: 82645397--82645438 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
82645387 TATACAAGTT
82645397 AAAAAAAATT--
1 AAAAAAAATTCG
*
82645407 AAAAAAAATCCG
1 AAAAAAAATTCG
82645419 AAAAAAAATTCG
1 AAAAAAAATTCG
82645431 AAAAAAAA
1 AAAAAAAA
82645439 ATTGAAGTGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
10 9 0.32
12 19 0.68
ACGTcount: A:0.76, C:0.07, G:0.05, T:0.12
Consensus pattern (12 bp):
AAAAAAAATTCG
Found at i:82646386 original size:6 final size:5
Alignment explanation
Indices: 82646362--82646418 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
82646352 ACGAGAAAAC
*
82646362 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAACGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
82646409 AAAGA AAAGA
1 AAAGA AAAGA
82646419 GAGGAAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
4 4 0.09
5 25 0.57
6 14 0.32
7 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.18, T:0.02
Consensus pattern (5 bp):
AAAGA
Found at i:82646393 original size:15 final size:14
Alignment explanation
Indices: 82646362--82646428 Score: 62
Period size: 16 Copynumber: 4.3 Consensus size: 14
82646352 ACGAGAAAAC
82646362 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
82646378 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
82646393 AAAGAAAACGAAATAA
1 AAAGAAAA-G-AAGAA
82646409 AAAGAAAAGAGAGGAA
1 AAAGAAAAGA-A-GAA
82646425 AAAG
1 AAAG
82646429 GTAAGTAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
14 5 0.11
15 12 0.27
16 22 0.50
17 5 0.11
ACGTcount: A:0.75, C:0.03, G:0.21, T:0.01
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:82646497 original size:13 final size:12
Alignment explanation
Indices: 82646466--82646497 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
82646456 TTGAGAGAAC
82646466 TTGAAAAAGCCT
1 TTGAAAAAGCCT
82646478 TTGAAAAAGCCT
1 TTGAAAAAGCCT
82646490 TTGAAAAA
1 TTGAAAAA
82646498 CAAAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:82646530 original size:18 final size:18
Alignment explanation
Indices: 82646490--82646533 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
82646480 GAAAAAGCCT
82646490 TTGAAAAACAAAAAGAAA
1 TTGAAAAACAAAAAGAAA
* * * *
82646508 ATGAAAAATAAAATGAGA
1 TTGAAAAACAAAAAGAAA
82646526 TTGAAAAA
1 TTGAAAAA
82646534 GAGAATGAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.68, C:0.02, G:0.14, T:0.16
Consensus pattern (18 bp):
TTGAAAAACAAAAAGAAA
Found at i:82646595 original size:18 final size:19
Alignment explanation
Indices: 82646559--82646597 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
82646549 TTTGAGAGAG
*
82646559 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
82646578 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
82646596 AA
1 AA
82646598 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:82648764 original size:30 final size:31
Alignment explanation
Indices: 82648690--82648776 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 31
82648680 CAACTCACGT
* *
82648690 GCTAAACCTTAGCTCAACTTCAGCT-TAGGA
1 GCTAAACCTTAGCTCAACTTTAGCTCAAGGA
* * *
82648720 GTTTAACCTCAGCTCAACTTTAGCTCAAGG-
1 GCTAAACCTTAGCTCAACTTTAGCTCAAGGA
* *
82648750 GCTAAAGCTTAGCTC-ATTTTAGCTCAA
1 GCTAAACCTTAGCTCAACTTTAGCTCAA
82648777 ACCCGATTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
29 11 0.24
30 32 0.70
31 3 0.07
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (31 bp):
GCTAAACCTTAGCTCAACTTTAGCTCAAGGA
Found at i:82650475 original size:45 final size:45
Alignment explanation
Indices: 82650188--82651061 Score: 349
Period size: 45 Copynumber: 19.5 Consensus size: 45
82650178 TATCATTTAG
* * * * *
82650188 TCTGTTCCACTGCAACTTCATGGAGATAGGATTTG-TAACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * * * * * **
82650232 CCCGCTCTACTGCTACTTCAGAGAGATAAGGTTTGCTATCTTTGA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * * * * *
82650277 TCTACTACGCTGCAACTTTAGGGAAATAAGACTAG-TGA-CTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCT-ATCTTCAA
* * * * *
82650321 CCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTG-T-T-TT-GA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * * **
82650362 TCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTATTTTATAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGA--T-T-TGCTAT--CTTCAA
* * * *
82650413 TCTGTTCCACTGTAACTTCAGGAAAATAAGATTTGCTATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * *
82650458 TCTGCTCCACTACAACTTCA-GGAAGATAAAACTTG--AT-TTCAA
1 TCTGCTCCACTGCAACTTCAGGGAA-ATAAGATTTGCTATCTTCAA
* * * *
82650500 CCTGCT-CACTGCTACTTCAGGGAGATAAGGTTTGCTA---T-AA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * **
82650540 TCTGCTCTACTGCAACTTCAGAGAGATAAGATATGTTTATTTATAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAG--A--TTT-GCTAT--CTTCAA
** * * * *
82650592 TCTATTCCACTACAACTTTAGGGAAATAAGATTCGCTATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * *
82650637 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTT--TAACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
** * * *
82650680 -CTTGCTCCACTGCAACTTCAATGAGATAAGGTTTG-T-T-TT-GA
1 TC-TGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* ** * **
82650721 TCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATTTATAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGAT-T-T--GCTAT--CTTCAA
* *
82650772 TCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * *
82650817 TTTGCTCCACTACAACTTCAGGGAGATAAGACTTG--AT-TTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * * * * * *
82650859 CCTACT-CACTGCTACTTCAGGGAGATAAGGTTTTCTA---T-GA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
** ** * * *
82650899 TCTGCTCTGCTATAACTTCAGAGAGATAAGATTTGTTTATTTATAGCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTG-----CTAT--CTTCAA
* * * * * *
82650951 TTTGTTCCACTGCAAGTTCAGGGAAATAAGATTCGTTATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* * *
82650996 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTT--TAACTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
* *
82651039 CCTGCT-CACTTCAACTTCAGGGA
1 TCTGCTCCACTGCAACTTCAGGGA
82651062 GATACGGTTT
Statistics
Matches: 611, Mismatches: 163, Indels: 114
0.69 0.18 0.13
Matches are distributed among these distances:
40 12 0.02
41 137 0.22
42 43 0.07
43 54 0.09
44 63 0.10
45 164 0.27
46 6 0.01
47 16 0.03
48 3 0.00
49 2 0.00
50 6 0.01
51 54 0.09
52 51 0.08
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (45 bp):
TCTGCTCCACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAA
Found at i:82650812 original size:180 final size:179
Alignment explanation
Indices: 82650240--82651117 Score: 1125
Period size: 179 Copynumber: 4.9 Consensus size: 179
82650230 AACCCGCTCT
* * * * * * * * * *
82650240 ACTGCTACTTCAGAGAGATAAGGTTTGCTATCTT-TGATCTACTACGCTGCAACTTTAGGGAAAT
1 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAG-TCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
82650304 AAGACTAGTGACTTCAGCCTGCTCCACTGCAACTTTAGGGAGATAAGGTTTGTTTTGATCTGCTC
65 AAGACT-TTGACTTCAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTTGTTATGATCTGCTC
* *
82650369 TACTGCAACTTTAGAGAGATAAGATCTGTATTTTATAGCTTCAATCTGTTCC
128 TACTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCC
* * * *
82650421 ACTGTAACTTCAGGAAAATAAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGAAGATA
1 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * * * *
82650486 AAAC-TTGATTTCAACCTGCTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTGCTCTAC
66 AGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAGGTTTGTTATGATCTGCTCTAC
* * *
82650550 TGCAACTTCAGAGAGATAAGATATGTTTATTTATAGCTTCAATCTATTCC
131 TGCAACTTCAGAGAGATAAGATCTG-TAATTTATAGCTTCAATCTGTTCC
* * * *
82650600 ACTACAACTTTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGCAACTTTAGGGAGATA
1 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * ** *
82650665 AGACTTTAACTTCAACTTGCTCCACTGCAACTTCAATGAGATAAGGTTTGTTTTGATCTGCTCTA
66 AGACTTTGACTTCAACCTGCT-CACTGCAACTTCAGGGAGATAAGGTTTGTTATGATCTGCTCTA
*
82650730 CTGCAACTTCATAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCC
130 CTGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCC
* * * *
82650780 ACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTCCACTACAACTTCAGGGAGATA
1 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
82650845 AGAC-TTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTT-TCTATGATCTGCTCTG
66 AGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAGGTTTGT-TATGATCTGCTCTA
** * * *
82650908 CTATAACTTCAGAGAGATAAGATTTGTTTATTTATAGCTTCAATTTGTTCC
130 CTGCAACTTCAGAGAGATAAGATCTG-TAATTTATAGCTTCAATCTGTTCC
* * *
82650959 ACTGCAAGTTCAGGGAAATAAGATTCGTTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
82651024 AGACTTTAACTTCAACCTGCTCACTTCAACTTCAGGGAGATACGGTTTGTTATGATCTACTCTAC
66 AGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAGGTTTGTTATGATCTGCTCTAC
* *
82651089 TACAACTTTAGAGAGATAAGATCTGTAAT
131 TGCAACTTCAGAGAGATAAGATCTGTAAT
82651118 CTTCAGCTTA
Statistics
Matches: 597, Mismatches: 92, Indels: 18
0.84 0.13 0.03
Matches are distributed among these distances:
177 1 0.00
178 120 0.20
179 193 0.32
180 168 0.28
181 114 0.19
182 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (179 bp):
ACTGCAACTTCAGGGAAATAAGATTTGCTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATA
AGACTTTGACTTCAACCTGCTCACTGCAACTTCAGGGAGATAAGGTTTGTTATGATCTGCTCTAC
TGCAACTTCAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTGTTCC
Found at i:82650876 original size:137 final size:135
Alignment explanation
Indices: 82650631--82650887 Score: 300
Period size: 137 Copynumber: 1.9 Consensus size: 135
82650621 GATTCGCTAT
* * * *
82650631 CTTCAGTCTGCTCCACTGCAACTTTAGGGAGATAAGACTTTAACTTCAACTTGCTCCACTGCAAC
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTTAACTTCAACTTGCTCCACTACAAC
* ** ** * * *
82650696 TTCAATGAGATAAGGTTTGTTTTGATCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATT
66 TTCAAGGAGATAAGACTTGTTTCAACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATT
82650761 TATAG
131 TATAG
* * * * *
82650766 CTTCAATCTGTTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTCCACTACA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGACTT--TAACTTCAACTTGCTCCACTACA
* * *
82650831 ACTTCAGGGAGATAAGACTTGATTTCAACCTACTC-ACTGCTACTTCAGGGAGATAAG
64 ACTTCAAGGAGATAAGACTTG-TTTCAACCTACTCTACTGCAACTTCAGAGAGATAAG
82650888 GTTTTCTATG
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
135 34 0.34
137 56 0.57
138 9 0.09
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (135 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAAATAAGACTTTAACTTCAACTTGCTCCACTACAAC
TTCAAGGAGATAAGACTTGTTTCAACCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTAATT
TATAG
Found at i:82650982 original size:359 final size:359
Alignment explanation
Indices: 82650286--82651117 Score: 1333
Period size: 359 Copynumber: 2.3 Consensus size: 359
82650276 ATCTACTACG
* * * * *
82650286 CTGCAACTTTAGGGAAATAAGACTAGTGACTTCAGCCTGCTCCACTGCAACTTTAGGGAGATAAG
1 CTGCAACTTTAGGGAGATAAGACT-TTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG
*
82650351 GTTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTATTTTATAGCTTCAATCT
65 GTTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCT
*
82650416 GTTCCACTGTAACTTCAGGAAAATAAGATTTGCTATCTTCAGTCTGCTCCACTACAACTTCAGGA
130 GTTCCACTGTAACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGGA
*
82650481 AGATAAAACTTGATTTCAACCTGCTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTGCT
195 AGATAAAACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTGCT
* *
82650546 CTACTGCAACTTCAGAGAGATAAGATATGTTTATTTATAGCTTCAATCTATTCCACTACAACTTT
260 CTACTACAACTTCAGAGAGATAAGATATGTTTATTTATAGCTTCAATCTATTCCACTACAACTTC
82650611 AGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
325 AGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
* **
82650646 CTGCAACTTTAGGGAGATAAGACTTTAACTTCAACTTGCTCCACTGCAACTTCAATGAGATAAGG
1 CTGCAACTTTAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* *
82650711 TTTGTTTTGATCTGCTCTACTGCAACTTCATAGAGATAAGATCTGTAATTTATAGCTTCAATCTG
66 TTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTG
* * *
82650776 TTCCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTCAATTTGCTCCACTACAACTTCAGGGA
131 TTCCACTGTAACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGGAA
* * *
82650841 GATAAGACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTTCTATGATCTGCTC
196 GATAAAACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTGCTC
* * * * * * *
82650906 TGCTATAACTTCAGAGAGATAAGATTTGTTTATTTATAGCTTCAATTTGTTCCACTGCAAGTTCA
261 TACTACAACTTCAGAGAGATAAGATATGTTTATTTATAGCTTCAATCTATTCCACTACAACTTCA
*
82650971 GGGAAATAAGATTCGTTATCTTCAGTCTGCTCCA
326 GGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
* * *
82651005 CTGCAACTTCAGGGAGATAAGACTTTAACTTCAACCTGCT-CACTTCAACTTCAGGGAGATACGG
1 CTGCAACTTTAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
* * *
82651069 TTTGTTATGATCTACTCTACTACAACTTTAGAGAGATAAGATCTGTAAT
66 TTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAAT
82651118 CTTCAGCTTA
Statistics
Matches: 432, Mismatches: 40, Indels: 2
0.91 0.08 0.00
Matches are distributed among these distances:
358 64 0.15
359 345 0.80
360 23 0.05
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (359 bp):
CTGCAACTTTAGGGAGATAAGACTTTAACTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG
TTTGTTTTGATCTGCTCTACTGCAACTTTAGAGAGATAAGATCTGTAATTTATAGCTTCAATCTG
TTCCACTGTAACTTCAGGAAAATAAGATTTGCTATCTTCAATCTGCTCCACTACAACTTCAGGAA
GATAAAACTTGATTTCAACCTACTCACTGCTACTTCAGGGAGATAAGGTTTGCTATAATCTGCTC
TACTACAACTTCAGAGAGATAAGATATGTTTATTTATAGCTTCAATCTATTCCACTACAACTTCA
GGGAAATAAGATTCGCTATCTTCAGTCTGCTCCA
Found at i:82651271 original size:44 final size:44
Alignment explanation
Indices: 82651155--82651271 Score: 128
Period size: 44 Copynumber: 2.7 Consensus size: 44
82651145 CTTAAATCTG
* * * * ** *
82651155 CTCCACTACTGCTTAGGGAGATAAGATTTTCCATCTTTGATTTG
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTAGACCTA
* *
82651199 CTCCACTAATGCTTAGGGAGACAAGATCTACAATCTTCAG-CCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT-AGACCTA
*
82651243 CTCCACTACTGCTTAGGGAGATAGGATCT
1 CTCCACTACTGCTTAGGGAGATAAGATCT
82651272 GTGAATTTAC
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
44 59 0.98
45 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTAGACCTA
Found at i:82673026 original size:12 final size:12
Alignment explanation
Indices: 82672950--82673034 Score: 50
Period size: 12 Copynumber: 7.1 Consensus size: 12
82672940 CAAAAATAAT
*
82672950 AATAATAAAATG
1 AATAATAAAATA
*
82672962 AAT-ATAAAAGA
1 AATAATAAAATA
*
82672973 ATTTAA-ACAAATA
1 A-ATAATA-AAATA
*
82672986 AA-AAGAAAATA
1 AATAATAAAATA
*
82672997 AATAAGAAAATA
1 AATAATAAAATA
**
82673009 TTTAATAAAATA
1 AATAATAAAATA
*
82673021 AGTAATAATAATA
1 AATAATAA-AATA
82673034 A
1 A
82673035 TAAAGATAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
11 16 0.28
12 30 0.53
13 11 0.19
ACGTcount: A:0.68, C:0.01, G:0.06, T:0.25
Consensus pattern (12 bp):
AATAATAAAATA
Found at i:82673202 original size:17 final size:17
Alignment explanation
Indices: 82673182--82673217 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
82673172 TAAATAGAGA
82673182 AATAATACATA-AAATAT
1 AATAATA-ATAGAAATAT
82673199 AATAATAATAGAAATAT
1 AATAATAATAGAAATAT
82673216 AA
1 AA
82673218 ATAGAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 3 0.17
17 15 0.83
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (17 bp):
AATAATAATAGAAATAT
Found at i:82673357 original size:3 final size:3
Alignment explanation
Indices: 82673284--82673348 Score: 58
Period size: 3 Copynumber: 21.0 Consensus size: 3
82673274 AGATGGAAAT
* * * **
82673284 ATA ATA ATA GTA ATA ATGCA ATA GTA ATA ATA ATT ATA ATA GCA ATA
1 ATA ATA ATA ATA ATA AT--A ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
82673331 ATA ATA ACA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
82673349 CCATAATAAA
Statistics
Matches: 48, Mismatches: 12, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
3 45 0.94
5 3 0.06
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:82675057 original size:22 final size:22
Alignment explanation
Indices: 82675027--82675076 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
82675017 TGAGTTGATG
* *
82675027 ACACAGGCGTGTCATATCAA-CC
1 ACACGGGCGTGTCACAT-AAGCC
82675049 ACACGGGCGTGTCACATAAGCC
1 ACACGGGCGTGTCACATAAGCC
82675071 ACACGG
1 ACACGG
82675077 ACGTTTGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 23 0.92
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (22 bp):
ACACGGGCGTGTCACATAAGCC
Found at i:82676646 original size:45 final size:45
Alignment explanation
Indices: 82676582--82676672 Score: 164
Period size: 45 Copynumber: 2.0 Consensus size: 45
82676572 CACAACGTTT
*
82676582 AACAATTTTTGCACTAATCTTTTCTTTCATATCATCGATTGAGAC
1 AACAATTTTTGCACTAATCTTTTCTTTCATATCATCAATTGAGAC
*
82676627 AACAATTTTTGCGCTAATCTTTTCTTTCATATCATCAATTGAGAC
1 AACAATTTTTGCACTAATCTTTTCTTTCATATCATCAATTGAGAC
82676672 A
1 A
82676673 TTTCTTTTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.42
Consensus pattern (45 bp):
AACAATTTTTGCACTAATCTTTTCTTTCATATCATCAATTGAGAC
Found at i:82677153 original size:19 final size:20
Alignment explanation
Indices: 82677125--82677163 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
82677115 TCTTATTTTT
82677125 TATTTCTTTTT-TGTTTTAA
1 TATTTCTTTTTATGTTTTAA
*
82677144 TATTTGTTTTTATGTTTTAA
1 TATTTCTTTTTATGTTTTAA
82677164 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.18, C:0.03, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTCTTTTTATGTTTTAA
Found at i:82677181 original size:25 final size:23
Alignment explanation
Indices: 82677144--82677189 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
82677134 TTTGTTTTAA
*
82677144 TATTTGTTTTTATGTTTTAAATG
1 TATTTGTTTTTATATTTTAAATG
82677167 TATTTGATTTATTATATTTTAAA
1 TATTTG-TTT-TTATATTTTAAA
82677190 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 11 0.55
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
TATTTGTTTTTATATTTTAAATG
Found at i:82683658 original size:21 final size:21
Alignment explanation
Indices: 82683619--82683659 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
82683609 GGCCATAATG
*
82683619 ATGTTCACACATGCCATTAAC
1 ATGTTCACACATGCAATTAAC
*
82683640 ATGTTCACACATGGAATTAA
1 ATGTTCACACATGCAATTAA
82683660 AAGCCATTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (21 bp):
ATGTTCACACATGCAATTAAC
Found at i:82692959 original size:18 final size:18
Alignment explanation
Indices: 82692932--82692980 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
82692922 ATTTTTTACG
82692932 TATAATAAATTACATAATA
1 TATAA-AAATTACATAATA
* *
82692951 TATAAAAATAACATCATA
1 TATAAAAATTACATAATA
*
82692969 TA-AAACATTACA
1 TATAAAAATTACA
82692981 AATTTACACA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 8 0.31
18 13 0.50
19 5 0.19
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (18 bp):
TATAAAAATTACATAATA
Found at i:82699724 original size:31 final size:31
Alignment explanation
Indices: 82699689--82699761 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
82699679 TACACGAAGT
* *
82699689 TACATTAAATTTTATTTTTCGTTCAAATGTA
1 TACATTAAATTTTAATTTTAGTTCAAATGTA
* * *
82699720 TACATAAAATTTTAATTTTATTTCAATTGTA
1 TACATTAAATTTTAATTTTAGTTCAAATGTA
*
82699751 TATATTTAAAT
1 TACA-TTAAAT
82699762 AAATGAATAC
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
31 29 0.85
32 5 0.15
ACGTcount: A:0.37, C:0.07, G:0.04, T:0.52
Consensus pattern (31 bp):
TACATTAAATTTTAATTTTAGTTCAAATGTA
Found at i:82703516 original size:9 final size:9
Alignment explanation
Indices: 82703504--82703569 Score: 64
Period size: 9 Copynumber: 7.2 Consensus size: 9
82703494 TATGAATTTT
*
82703504 TTTTTAGAA
1 TTTTTATAA
82703513 TTTTTATAA
1 TTTTTATAA
*
82703522 GTTTATATCAA
1 -TTTTTAT-AA
*
82703533 TTTTAATAA
1 TTTTTATAA
82703542 TTTTTATAA
1 TTTTTATAA
82703551 TATTTTA-AA
1 T-TTTTATAA
82703560 TTTTT-TAA
1 TTTTTATAA
82703568 TT
1 TT
82703570 ATTTTTTAAG
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
8 8 0.17
9 22 0.46
10 16 0.33
11 2 0.04
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:82703555 original size:20 final size:20
Alignment explanation
Indices: 82703532--82703644 Score: 58
Period size: 20 Copynumber: 5.8 Consensus size: 20
82703522 GTTTATATCA
82703532 ATTTTAATAATTTTTATAAT
1 ATTTTAATAATTTTTATAAT
* *
82703552 ATTTTAA-ATTTTTTAATTAT
1 ATTTTAATAATTTTT-ATAAT
* * *
82703572 TTTTTAAGAATTTTAAT-AT
1 ATTTTAATAATTTTTATAAT
* **
82703591 GTTTTTACA-AAACTTTA-AAT
1 -ATTTTA-ATAATTTTTATAAT
* *
82703611 ATTTTAAATAAGTTTTATTA-
1 ATTTT-AATAATTTTTATAAT
82703631 ATTTT-ATAATTTTT
1 ATTTTAATAATTTTT
82703645 TTTACAATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
18 8 0.11
19 13 0.18
20 44 0.61
21 7 0.10
ACGTcount: A:0.37, C:0.02, G:0.03, T:0.58
Consensus pattern (20 bp):
ATTTTAATAATTTTTATAAT
Found at i:82703568 original size:17 final size:19
Alignment explanation
Indices: 82703540--82703574 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
82703530 CAATTTTAAT
82703540 AATTTTTATAA-TATTTTA
1 AATTTTTATAATTATTTTA
82703558 AATTTTT-TAATTATTTT
1 AATTTTTATAATTATTTT
82703575 TTAAGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.19
18 13 0.81
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (19 bp):
AATTTTTATAATTATTTTA
Found at i:82703627 original size:50 final size:49
Alignment explanation
Indices: 82703531--82703644 Score: 122
Period size: 50 Copynumber: 2.3 Consensus size: 49
82703521 AGTTTATATC
* * * * * **
82703531 AATTTTAATAATTTTTATAATATTTTAAATTTTTTAATTATTTTTTAAG
1 AATTTTAATAATTTTTACAAAACTTTAAATATTTTAAATAAGTTTTAAG
* **
82703580 AATTTTAATATGTTTTTACAAAACTTTAAATATTTTAAATAAGTTTTATT
1 AATTTTAATA-ATTTTTACAAAACTTTAAATATTTTAAATAAGTTTTAAG
82703630 AATTTT-ATAATTTTT
1 AATTTTAATAATTTTT
82703645 TTTACAATTT
Statistics
Matches: 53, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
48 5 0.09
49 13 0.25
50 35 0.66
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.58
Consensus pattern (49 bp):
AATTTTAATAATTTTTACAAAACTTTAAATATTTTAAATAAGTTTTAAG
Found at i:82703646 original size:50 final size:49
Alignment explanation
Indices: 82703518--82703645 Score: 116
Period size: 50 Copynumber: 2.6 Consensus size: 49
82703508 TAGAATTTTT
* * * *
82703518 ATAAGTTTATATCAATTTTAATAA-TTTTTATAATATTTTAAATTTTTTAA
1 ATAAGTTT-TATCAATTTT-ATAATTTTTTACAAAACTTTAAATATTTTAA
* ** **
82703568 TTATTTTTTAAGAATTTTA-ATATGTTTTTACAAAACTTTAAATATTTTAA
1 ATAAGTTTTATCAATTTTATA-AT-TTTTTACAAAACTTTAAATATTTTAA
*
82703618 ATAAGTTTTATTAATTTTATAATTTTTT
1 ATAAGTTTTATCAATTTTATAATTTTTT
82703646 TTACAATTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 9
0.72 0.17 0.11
Matches are distributed among these distances:
47 1 0.02
48 2 0.03
49 13 0.22
50 43 0.72
51 1 0.02
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (49 bp):
ATAAGTTTTATCAATTTTATAATTTTTTACAAAACTTTAAATATTTTAA
Found at i:82705618 original size:26 final size:26
Alignment explanation
Indices: 82705589--82705639 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
82705579 TACAGTTTTT
82705589 CCCCTAGGAGATAAATT-ACCAAAATA
1 CCCCTAGG-GATAAATTGACCAAAATA
* *
82705615 CCCCTAGGGTTAAATTGACCTAAAT
1 CCCCTAGGGATAAATTGACCAAAAT
82705640 GCATGTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.39, C:0.24, G:0.14, T:0.24
Consensus pattern (26 bp):
CCCCTAGGGATAAATTGACCAAAATA
Found at i:82722377 original size:26 final size:26
Alignment explanation
Indices: 82722320--82722369 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
82722310 CATGAAATTC
82722320 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82722346 TTATCATGAAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
82722370 TTTTATCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.26, G:0.04, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82723121 original size:24 final size:24
Alignment explanation
Indices: 82723094--82723139 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
82723084 GTGTTGATGA
82723094 CTTTTAAATTTCTTTTT-ATTATTT
1 CTTTTAAATTT-TTTTTAATTATTT
*
82723118 CTTTTTAATTTTTTTTAATTAT
1 CTTTTAAATTTTTTTTAATTAT
82723140 ACAATTATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.72
Consensus pattern (24 bp):
CTTTTAAATTTTTTTTAATTATTT
Found at i:82723134 original size:10 final size:11
Alignment explanation
Indices: 82723094--82723137 Score: 54
Period size: 13 Copynumber: 3.9 Consensus size: 11
82723084 GTGTTGATGA
*
82723094 CTTTTAAATTT
1 CTTTTTAATTT
82723105 CTTTTTATTATTT
1 CTTTTTA--ATTT
82723118 CTTTTTAATTT
1 CTTTTTAATTT
82723129 -TTTTTAATT
1 CTTTTTAATT
82723138 ATACAATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 9 0.30
11 10 0.33
13 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (11 bp):
CTTTTTAATTT
Found at i:82723583 original size:14 final size:14
Alignment explanation
Indices: 82723564--82723593 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
82723554 CTGTTTAGAT
82723564 TTTTAAAGTTTGAA
1 TTTTAAAGTTTGAA
82723578 TTTTAAAGTTTGAA
1 TTTTAAAGTTTGAA
82723592 TT
1 TT
82723594 CCAATTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (14 bp):
TTTTAAAGTTTGAA
Found at i:82726395 original size:12 final size:12
Alignment explanation
Indices: 82726378--82726403 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
82726368 AAAACTGCCC
82726378 AATAGTAATAAT
1 AATAGTAATAAT
82726390 AATAGTAATAAT
1 AATAGTAATAAT
82726402 AA
1 AA
82726404 CAAGCCATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATAGTAATAAT
Found at i:82733143 original size:21 final size:21
Alignment explanation
Indices: 82733117--82733164 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
82733107 ATTTTCTTGT
*
82733117 TGCCTCTGCTACCCTTACTGC
1 TGCCTCTGCTACCCTTACTAC
*
82733138 TGCCTCTGCTTCCCTTACTAC
1 TGCCTCTGCTACCCTTACTAC
82733159 TGCCTC
1 TGCCTC
82733165 CGTTTTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.08, C:0.44, G:0.12, T:0.35
Consensus pattern (21 bp):
TGCCTCTGCTACCCTTACTAC
Found at i:82733376 original size:86 final size:86
Alignment explanation
Indices: 82733227--82733400 Score: 276
Period size: 86 Copynumber: 2.0 Consensus size: 86
82733217 TCTCGATGCT
* * *
82733227 GCCTCCATTTTAAGTTGAGAAATTTTCTCAATTGTGCTCGCTTGTATATGAGCCATCCAGTCTCT
1 GCCTCCACTTTAAGTTGAGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGCCATCCAGTCTCT
*
82733292 TAACATTGAACTTTAGCTTGA
66 TAACATTGAACTTTAACTTGA
* * *
82733313 GCCTCCACTTTAAGTTGGGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGTCATCCGGTCTCT
1 GCCTCCACTTTAAGTTGAGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGCCATCCAGTCTCT
*
82733378 TAACATTGAATTTTAACTTGA
66 TAACATTGAACTTTAACTTGA
82733399 GC
1 GC
82733401 TGATTCACCG
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (86 bp):
GCCTCCACTTTAAGTTGAGAAATTTTCTCAATTGTGCTAGCTTGCATATGAGCCATCCAGTCTCT
TAACATTGAACTTTAACTTGA
Found at i:82740702 original size:14 final size:15
Alignment explanation
Indices: 82740668--82740715 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
82740658 TTTTCCCTTT
* *
82740668 TTATCCTATTATTTG
1 TTATACTATTATTTA
82740683 TTATACTATT-TTTA
1 TTATACTATTATTTA
* *
82740697 TTATACCACTATTTA
1 TTATACTATTATTTA
82740712 TTAT
1 TTAT
82740716 TTTTATTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.27, C:0.12, G:0.02, T:0.58
Consensus pattern (15 bp):
TTATACTATTATTTA
Found at i:82745945 original size:56 final size:56
Alignment explanation
Indices: 82745859--82746034 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
82745849 ACAAGGGATG
*
82745859 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
82745915 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
82745971 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
82746027 ATGGGCAA
1 ATGGGCAA
82746035 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:82747227 original size:40 final size:39
Alignment explanation
Indices: 82747143--82747407 Score: 291
Period size: 40 Copynumber: 6.6 Consensus size: 39
82747133 TCGAATGATG
* * * *
82747143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * * * *
82747183 TCCGGACTGAGATCTGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82747223 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
82747262 TCCGGGTTAAATCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
82747302 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
* *
82747342 TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTA-AA
*
82747383 T-CGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
82747408 AACGAGTAGC
Statistics
Matches: 193, Mismatches: 25, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
39 33 0.17
40 148 0.77
41 12 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82747345 original size:80 final size:80
Alignment explanation
Indices: 82747143--82747440 Score: 338
Period size: 80 Copynumber: 3.8 Consensus size: 80
82747133 TCGAATGATG
* * * * * * * *
82747143 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTGAGAT-CTGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-GTTAAATCCCGAAGGCAT
* *
82747206 TTGTGCGAGATACTAAT
64 TTGTGCGAGTTACTAAA
*
82747223 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTT
82747287 GTGCGAGTTACTAAA
66 GTGCGAGTTACTAAA
* * **
82747302 TCCGGGTTAAGTCTCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGCCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTT
82747367 GTGCGAGTTACTATAA
66 GTGCGAGTTACTA-AA
* ** * *
82747383 T-CGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
82747441 TACGTGATTT
Statistics
Matches: 188, Mismatches: 25, Indels: 11
0.84 0.11 0.05
Matches are distributed among these distances:
78 4 0.02
79 70 0.37
80 111 0.59
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTT
GTGCGAGTTACTAAA
Found at i:82747421 original size:40 final size:40
Alignment explanation
Indices: 82747198--82747407 Score: 316
Period size: 40 Copynumber: 5.3 Consensus size: 40
82747188 ACTGAGATCT
* * *
82747198 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
* *
82747237 GAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAATCCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
*
82747277 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCTC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
*
82747317 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGCCCC
1 GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
* *
82747357 GAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTATGTCCC
1 GAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTCCC
82747397 GAAGGCATTTG
1 GAAGGCATTTG
82747408 AACGAGTAGC
Statistics
Matches: 156, Mismatches: 13, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 31 0.20
40 122 0.78
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
GAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCC
Found at i:82753484 original size:56 final size:56
Alignment explanation
Indices: 82753398--82753517 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
82753388 ACAAGGGATG
82753398 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
82753454 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
82753510 ATGGGCAA
1 ATGGGCAA
82753518 TAAACTAATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:82754833 original size:119 final size:120
Alignment explanation
Indices: 82754622--82754921 Score: 351
Period size: 119 Copynumber: 2.5 Consensus size: 120
82754612 TCGAATGATG
* * * ** *
82754622 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGTATT
*
82754686 TGTGCGAGATACTAATTCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
64 TGTGCGAGATACTAAATCCAGGCTAAGCCCCGAAGGCATTGGTGCGAGTTACTATAA
* * *
82754741 TCCGGGTTAAGTCCCGACGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGTATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGT-CCGAAGGTATTT
* * * *
82754806 GTGCGAGTTACTAAATCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
65 GTGCGAGATACTAAATCCAGGCTAAGCCCCGAAGGCATTGGTGCGAGTTACTATAA
* ** *
82754862 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGGTA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGTT-AAGTCCGAAGGTA
82754922 CGTGATTTGG
Statistics
Matches: 154, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 83 0.54
120 68 0.44
121 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGTTAAGTCCGAAGGTATTTG
TGCGAGATACTAAATCCAGGCTAAGCCCCGAAGGCATTGGTGCGAGTTACTATAA
Found at i:82754900 original size:40 final size:40
Alignment explanation
Indices: 82754622--82754886 Score: 322
Period size: 40 Copynumber: 6.7 Consensus size: 40
82754612 TCGAATGATG
* * * * *
82754622 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
82754662 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
82754702 TCCAGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82754741 TCCGGGTTAAGTCCCGACGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82754781 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
82754821 TCCGGGTTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
82754862 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
82754887 AACGAGTAGC
Statistics
Matches: 197, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 33 0.17
40 154 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:82762544 original size:133 final size:133
Alignment explanation
Indices: 82762376--82762934 Score: 940
Period size: 133 Copynumber: 4.2 Consensus size: 133
82762366 GATTACAGAT
* *
82762376 ATCATCAGCCTTATCTTTACTGAGCAGGAGTGGAGCAGGCTAAATACTAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * *
82762441 AGCAAGAGTGAAGCAGATCGAATTTTAGAGAATCTTGTCTCCACGTCCCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
82762506 CCA
131 CCA
* * * *
82762509 ATTATCAGCCTTATCTTCATTGAGCAGGAGTGGAGCAGACTAAATACTAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * *
82762574 AGCAGGAGTGAAGCAGATCGAACTTTAAAGAATCTTATCTCCACGTCCCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
82762639 CCA
131 CCA
*
82762642 ATCATCAGCCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
* * * *
82762707 AGTAGGAGTGAAGCAGATCAAATTTT-GATGAATCTTATCTCCATGTACCGGTGATGGAGCAGAT
66 AGCAGGAGTGAAGCAGATCGAATTTTAGA-GAATCTTATCTCCACGTACCGGCGATGGAGCAGAT
82762771 TCCA
130 TCCA
82762775 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
1 ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
82762840 AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
66 AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
82762905 CCA
131 CCA
*
82762908 ATCATCAGCCTTATCTTCACTAAGCAG
1 ATCATCAGCCTTATCTTCACTGAGCAG
82762935 TAGGGTAAAG
Statistics
Matches: 398, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
132 1 0.00
133 395 0.99
134 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (133 bp):
ATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCACTG
AGCAGGAGTGAAGCAGATCGAATTTTAGAGAATCTTATCTCCACGTACCGGCGATGGAGCAGATT
CCA
Found at i:82762569 original size:43 final size:43
Alignment explanation
Indices: 82762385--82762856 Score: 223
Period size: 43 Copynumber: 10.7 Consensus size: 43
82762375 TATCATCAGC
* *
82762385 CTTATCTTTACTGAGCAGGAGTGGAGCAGGCTAAATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTAAATACTAGAT
* * * * *
82762428 CTTATCTTCACTGAGCAAGAGTGAAGCAGATCGAATTTTA-GAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGA-CTAA--ATACTAG-AT
* * ** * * * * *
82762474 CTTGTCTCCAC-GTCCCGGCGATGGAGCAGATTCCAATTA-TCAG-C
1 CTTATCTTCACTGAGCAGGAG-TGGAGCAGA--CTAAATACT-AGAT
*
82762518 CTTATCTTCATTGAGCAGGAGTGGAGCAGACTAAATACTAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTAAATACTAGAT
* * * *
82762561 CTTATCTTCACTGAGCAGGAGTGAAGCAGATCGAACTTTA-AAGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGA-CTAA--ATACTAG-AT
* ** * * * * *
82762607 CTTATCTCCAC-GTCCCGGCGATGGAGCAGATTCCAAT-CATCAG-C
1 CTTATCTTCACTGAGCAGGAG-TGGAGCAGACT-AAATAC-T-AGAT
* * *
82762651 CTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTAAATACTAGAT
* * **
82762694 CTTATCTTCACTGAGTAGGAGTGAAGCAGA-TCAAATTTTGATGAAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACT-AAATACT-A-G-AT
* * * * * *
82762740 CTTATCTCCA-TGTA-CCGGTGATGGAGCAGATTCCAAT-CATCAG-C
1 CTTATCTTCACTG-AGCAGGAG-TGGAGCAGACT-AAATAC-T-AGAT
* *
82762784 CTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGAT
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGACTAAATACTAGAT
*
82762827 CTTATCTTCACTGAGCAGGAGTGAAGCAGA
1 CTTATCTTCACTGAGCAGGAGTGGAGCAGA
82762857 TCGAATTTTA
Statistics
Matches: 315, Mismatches: 80, Indels: 68
0.68 0.17 0.15
Matches are distributed among these distances:
42 12 0.04
43 121 0.38
44 65 0.21
45 37 0.12
46 69 0.22
47 11 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26
Consensus pattern (43 bp):
CTTATCTTCACTGAGCAGGAGTGGAGCAGACTAAATACTAGAT
Found at i:82764286 original size:14 final size:15
Alignment explanation
Indices: 82764252--82764299 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
82764242 TTTTCCCTTT
* *
82764252 TTATCCTATTATTTG
1 TTATACTATTATTTA
82764267 TTATACTATT-TTTA
1 TTATACTATTATTTA
* *
82764281 TTATACCACTATTTA
1 TTATACTATTATTTA
82764296 TTAT
1 TTAT
82764300 TTTTATTACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.27, C:0.12, G:0.02, T:0.58
Consensus pattern (15 bp):
TTATACTATTATTTA
Found at i:82764337 original size:13 final size:14
Alignment explanation
Indices: 82764319--82764347 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
82764309 ATTACGTTTG
82764319 TTTTACTATTT-TT
1 TTTTACTATTTATT
82764332 TTTTACTATTTATT
1 TTTTACTATTTATT
82764346 TT
1 TT
82764348 AAATCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTACTATTTATT
Found at i:82764376 original size:24 final size:25
Alignment explanation
Indices: 82764340--82764394 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
82764330 TTTTTTACTA
82764340 TTTATT-TTAAATCATTATAT-TAT
1 TTTATTATTAAATCATTATATATAT
* *
82764363 TATTATTATT-AATCTTTTTATATAT
1 T-TTATTATTAAATCATTATATATAT
82764388 TTTATTA
1 TTTATTA
82764395 AAAGTTACTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 1 0.04
24 20 0.74
25 6 0.22
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTATTATTAAATCATTATATATAT
Done.