Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 258 of 295
Found at i:82765167 original size:126 final size:126
Alignment explanation
Indices: 82764941--82765168 Score: 332
Period size: 126 Copynumber: 1.8 Consensus size: 126
82764931 AATCATTTTT
* * ** * * * *
82764941 AAAATAATGGCAATTTTCGGTATTTATGGAACTCAAAGGATCGTGCCCTAACGTACTGGGTTTCG
1 AAAATAAAGGCAATGTTCGGTATTTAAAGAACTCAAAGAATCGTGCCCTAACGCACTGGGCTCCG
82765006 CTTTCTTTGTTAGTCTTGAATATTCGAATAACCTCTTCCCAGTGCACTCTCAAAAGATTTC
66 CTTTCTTTGTTAGTCTTGAATATTCGAATAACCTCTTCCCAGTGCACTCTCAAAAGATTTC
* *
82765067 AAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGCACTGGGCTCCG
1 AAAATAAAGGCAATGTTCGGTATTTAAAGAACTCAAAGAATCGTGCCCTAACGCACTGGGCTCCG
* *
82765132 CTTTCTTTGTTTA-TTTTGAATATTCGAATATCCTCTT
66 CTTTCTTTG-TTAGTCTTGAATATTCGAATAACCTCTT
82765169 AAGGCTAAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 86 0.97
127 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (126 bp):
AAAATAAAGGCAATGTTCGGTATTTAAAGAACTCAAAGAATCGTGCCCTAACGCACTGGGCTCCG
CTTTCTTTGTTAGTCTTGAATATTCGAATAACCTCTTCCCAGTGCACTCTCAAAAGATTTC
Found at i:82766020 original size:20 final size:20
Alignment explanation
Indices: 82765991--82766033 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
82765981 CAGAAAATGA
*
82765991 TTTCTAGAAAATTATTTA-TT
1 TTTCTAG-AAATGATTTACTT
*
82766011 TTTCTGGAAATGATTTACTT
1 TTTCTAGAAATGATTTACTT
82766031 TTT
1 TTT
82766034 TGGTGTTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.28, C:0.07, G:0.09, T:0.56
Consensus pattern (20 bp):
TTTCTAGAAATGATTTACTT
Found at i:82767940 original size:35 final size:35
Alignment explanation
Indices: 82767896--82767969 Score: 148
Period size: 35 Copynumber: 2.1 Consensus size: 35
82767886 TAACAAAACA
82767896 AAAACCAAATATACCAAATACCCTTACCCTTACAC
1 AAAACCAAATATACCAAATACCCTTACCCTTACAC
82767931 AAAACCAAATATACCAAATACCCTTACCCTTACAC
1 AAAACCAAATATACCAAATACCCTTACCCTTACAC
82767966 AAAA
1 AAAA
82767970 GCTAATTCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (35 bp):
AAAACCAAATATACCAAATACCCTTACCCTTACAC
Found at i:82768768 original size:18 final size:19
Alignment explanation
Indices: 82768735--82768770 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
82768725 GTAATTTTCA
82768735 AAATTCAAAATATTTATAG
1 AAATTCAAAATATTTATAG
*
82768754 AAATTCTAAAT-TTTATA
1 AAATTCAAAATATTTATA
82768771 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.42
Consensus pattern (19 bp):
AAATTCAAAATATTTATAG
Found at i:82768808 original size:20 final size:18
Alignment explanation
Indices: 82768765--82768805 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
82768755 AATTCTAAAT
82768765 TTTAT-ATTTTTTAAAAA
1 TTTATAATTTTTTAAAAA
82768782 TTTATAATTTTTTAAAAA
1 TTTATAATTTTTTAAAAA
*
82768800 TATATA
1 TTTATA
82768806 TAAAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 5 0.23
18 17 0.77
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTTATAATTTTTTAAAAA
Found at i:82769136 original size:21 final size:21
Alignment explanation
Indices: 82769112--82769151 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
82769102 GCCTTTTCTA
*
82769112 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGGCAAAACTATC
*
82769133 AAGTTAGAAGGCAAAACTA
1 AAGTTAAAAGGCAAAACTA
82769152 CGTTATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.15, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAGGCAAAACTATC
Found at i:82770249 original size:92 final size:92
Alignment explanation
Indices: 82770089--82770272 Score: 289
Period size: 92 Copynumber: 2.0 Consensus size: 92
82770079 TATGTTTGAA
* *
82770089 ATGTTATATTTTAGTCACTTACGTCATCATTTTATTACGAAGTGCTCACTCTACTATTAAATTCT
1 ATGTTATACTTTAGTCACTTACGTCATCATTTTATTACGAAGTGCTCACTCTACCATTAAATTCT
* *
82770154 GTTACCTCCCTAATGGCAGTCCTACGT
66 GTTACCTCCCTAATGACAATCCTACGT
* * *
82770181 ATGTTATACTTTAGTCACTTACGTCATCATTTTGTTACGAAGTGGTCACTCTACCGTTAAACTT-
1 ATGTTATACTTTAGTCACTTACGTCATCATTTTATTACGAAGTGCTCACTCTACCATTAAA-TTC
82770245 TGTTACCTCCCTAATGACAATCCTACGT
65 TGTTACCTCCCTAATGACAATCCTACGT
82770273 GGTAGTCCAA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
92 82 0.98
93 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.12, T:0.39
Consensus pattern (92 bp):
ATGTTATACTTTAGTCACTTACGTCATCATTTTATTACGAAGTGCTCACTCTACCATTAAATTCT
GTTACCTCCCTAATGACAATCCTACGT
Found at i:82773828 original size:19 final size:19
Alignment explanation
Indices: 82773805--82773857 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
82773795 ATAATATTGC
82773805 ATAAACATATACATATATA
1 ATAAACATATACATATATA
* *
82773824 TTAAAGGTATATACATATATA
1 ATAAA--CATATACATATATA
82773845 ATAGAACATATAC
1 ATA-AACATATAC
82773858 TAACAATAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 4 0.15
20 6 0.22
21 15 0.56
22 2 0.07
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (19 bp):
ATAAACATATACATATATA
Found at i:82775039 original size:15 final size:15
Alignment explanation
Indices: 82775021--82775079 Score: 75
Period size: 15 Copynumber: 3.9 Consensus size: 15
82775011 ATATTTAATG
82775021 ATATAATATATAAAA
1 ATATAATATATAAAA
*
82775036 ATAT-ATTTATAAAA
1 ATATAATATATAAAA
82775050 ATAATAATTATATAAAA
1 AT-ATAA-TATATAAAA
*
82775067 ATATAAAATATAA
1 ATATAATATATAA
82775080 TGGTTTAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
14 11 0.29
15 12 0.32
16 5 0.13
17 10 0.26
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
ATATAATATATAAAA
Found at i:82775041 original size:17 final size:17
Alignment explanation
Indices: 82775021--82775078 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
82775011 ATATTTAATG
82775021 ATATAATATATAAAAAT
1 ATATAATATATAAAAAT
82775038 ATAT--T-TATAAAAAT
1 ATATAATATATAAAAAT
82775052 A-ATAATTATATAAAAAT
1 ATATAA-TATATAAAAAT
*
82775069 ATAAAATATA
1 ATATAATATA
82775079 ATGGTTTAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
13 2 0.06
14 10 0.29
15 1 0.03
16 1 0.03
17 18 0.51
18 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATAATATATAAAAAT
Found at i:82775363 original size:18 final size:19
Alignment explanation
Indices: 82775340--82775381 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
82775330 CAATATGTAG
* *
82775340 ATAAAAAT-ACTTAATAGT
1 ATAAAAATGACATAATAAT
82775358 AT-AAAATGACATAATAAT
1 ATAAAAATGACATAATAAT
82775376 ATAAAA
1 ATAAAA
82775382 TAAATATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.25
18 12 0.60
19 3 0.15
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAAAAATGACATAATAAT
Found at i:82775382 original size:18 final size:17
Alignment explanation
Indices: 82775351--82775399 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 17
82775341 TAAAAATACT
* *
82775351 TAATAGTATAAAATGACA
1 TAATAATATAAAAT-AAA
82775369 TAATAATATAAAATAAA
1 TAATAATATAAAATAAA
*
82775386 T-ATAATATATAATA
1 TAATAATATAAAATA
82775400 TGAAAGTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 12 0.43
17 3 0.11
18 13 0.46
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (17 bp):
TAATAATATAAAATAAA
Found at i:82775455 original size:20 final size:18
Alignment explanation
Indices: 82775371--82775476 Score: 85
Period size: 20 Copynumber: 5.6 Consensus size: 18
82775361 AAATGACATA
82775371 ATAATATA-AAATAA-AT
1 ATAATATATAAATAATAT
82775387 ATAATATATAATATGAA-AGT
1 ATAATATATAA-AT-AATA-T
*
82775407 AT-ATATGTGAAAATAATAT
1 ATAATATAT--AAATAATAT
*
82775426 ATAGTATATAAATAATAT
1 ATAATATATAAATAATAT
82775444 GAGTAATATATAAAATAATCAT
1 -A-TAATATAT-AAATAAT-AT
82775466 ATAATATATAA
1 ATAATATATAA
82775477 TTTAAAAATA
Statistics
Matches: 74, Mismatches: 4, Indels: 21
0.75 0.04 0.21
Matches are distributed among these distances:
16 8 0.11
17 2 0.03
18 11 0.15
19 16 0.22
20 25 0.34
21 10 0.14
22 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.07, T:0.35
Consensus pattern (18 bp):
ATAATATATAAATAATAT
Found at i:82777175 original size:19 final size:17
Alignment explanation
Indices: 82777136--82777168 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
82777126 ATAGCTAAAT
82777136 ATAATATAATAATAATA
1 ATAATATAATAATAATA
82777153 ATAATATAA-AATAATA
1 ATAATATAATAATAATA
82777169 GTGATAACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAATATAATAATAATA
Found at i:82777830 original size:11 final size:11
Alignment explanation
Indices: 82777806--82777842 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
82777796 AGGTAAGTTC
82777806 TTTTTTATAT-
1 TTTTTTATATA
82777816 TTTTTTATATA
1 TTTTTTATATA
*
82777827 TTTTTTACATA
1 TTTTTTATATA
82777838 TTTTT
1 TTTTT
82777843 AGTTTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 10 0.40
11 15 0.60
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTATATA
Found at i:82779111 original size:14 final size:14
Alignment explanation
Indices: 82779092--82779126 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
82779082 TAATTGATTT
*
82779092 TTGAAAAACATAAA
1 TTGAAAAACAAAAA
82779106 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
82779120 TTGAAAA
1 TTGAAAA
82779127 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.09, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:82779257 original size:17 final size:17
Alignment explanation
Indices: 82779235--82779268 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82779225 TCAACTCATC
82779235 TCTCGCAATATGAGTTG
1 TCTCGCAATATGAGTTG
82779252 TCTCGCAATATGAGTTG
1 TCTCGCAATATGAGTTG
82779269 ATTTTTTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (17 bp):
TCTCGCAATATGAGTTG
Found at i:82779275 original size:94 final size:92
Alignment explanation
Indices: 82779158--82779337 Score: 209
Period size: 92 Copynumber: 1.9 Consensus size: 92
82779148 TCAACTCGCC
* * * *
82779158 TCTCGCAATACAATTTGACTTTTTTTAAAAAAAAGAATTGAAAATACCTC-AGCGTGTGACCTGA
1 TCTCGCAATACAAGTTGA-TTTTTTTAAAAAAAA-AATTAAAAATACCTCGA-CATGTGACCCGA
* * *
82779222 GGCTCAACTCATCTCTCGCAATATGAGTTG
63 GACTCAACTCACCTCTAGCAATATGAGTTG
** * ** *
82779252 TCTCGCAATATGAGTTGATTTTTTTGAAGCATAAATTAAAAATACCTCGACATGTGACCCGAGAC
1 TCTCGCAATACAAGTTGATTTTTTTAAAAAAAAAATTAAAAATACCTCGACATGTGACCCGAGAC
82779317 TCAACTCACCTCTAGCAATAT
66 TCAACTCACCTCTAGCAATAT
82779338 AAATTGATTT
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
92 45 0.62
93 12 0.17
94 15 0.21
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (92 bp):
TCTCGCAATACAAGTTGATTTTTTTAAAAAAAAAATTAAAAATACCTCGACATGTGACCCGAGAC
TCAACTCACCTCTAGCAATATGAGTTG
Found at i:82779367 original size:14 final size:14
Alignment explanation
Indices: 82779348--82779382 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
82779338 AAATTGATTT
*
82779348 TTGAAAAACATAAA
1 TTGAAAAACAGAAA
*
82779362 TTGAAAAACAGAAT
1 TTGAAAAACAGAAA
82779376 TTGAAAA
1 TTGAAAA
82779383 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:82779455 original size:14 final size:14
Alignment explanation
Indices: 82779436--82779484 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
82779426 AGTTGATTTT
82779436 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
82779450 TTGAAAAGCAAAAA
1 TTGAAAAGCAAAAA
* *
82779464 TTGAAAAGCAGACA
1 TTGAAAAGCAAAAA
82779478 TTGAAAA
1 TTGAAAA
82779485 TACCTCAGCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.59, C:0.08, G:0.16, T:0.16
Consensus pattern (14 bp):
TTGAAAAGCAAAAA
Found at i:82779524 original size:102 final size:101
Alignment explanation
Indices: 82779348--82779556 Score: 314
Period size: 102 Copynumber: 2.1 Consensus size: 101
82779338 AAATTGATTT
* * *
82779348 TTGAAAAACATAAATTGAAAAACAGAATTTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCAC
1 TTGAAAAACAAAAATTGAAAAACAGAATTTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCAC
82779413 CTCTCGCAATATGAGTTGATTTTTTGA-AAAGCAAAAA
66 CTCTCGCAATATGAGTTGA-TTTTTGACAAA-CAAAAA
* *
82779450 TTGAAAAGCAAAAATTGAAAAGCAGACA-TTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCA
1 TTGAAAAACAAAAATTGAAAAACAGA-ATTTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCA
* *
82779514 CCTCTTGCAATATGAGTTGATTTTTGACAAACAGAAA
65 CCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
82779551 TTGAAA
1 TTGAAA
82779557 TTACCTCAAT
Statistics
Matches: 98, Mismatches: 7, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
101 18 0.18
102 79 0.81
103 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.25
Consensus pattern (101 bp):
TTGAAAAACAAAAATTGAAAAACAGAATTTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTTTGACAAACAAAAA
Found at i:82779597 original size:73 final size:73
Alignment explanation
Indices: 82779464--82779775 Score: 394
Period size: 76 Copynumber: 4.2 Consensus size: 73
82779454 AAAGCAAAAA
* * * *
82779464 TTGAAAAGCAGACATTGAAAATACCTCAGCGTGCCCTAAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAA-CAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
82779529 GTTGA-TTT
65 GTTGATTTT
* *
82779537 TTGACAAACAGAAATTGAAATTACCTCAATGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
82779602 GTTGATTTTT
65 GTTGA-TTTT
* * * * * *
82779612 TTGAAAGACAGAAATTGAAAATTACCTCAGCATGTCTTGAGGCTCAACTCATCTCTCGCAACATG
1 TTGAAA-ACAGAAATTGAAAA-TACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATG
82779677 AGTTGATTTTTT
64 AGTTGA--TTTT
* * * *
82779689 TTGAAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGTAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
82779754 GTTGA-TTT
65 GTTGATTTT
82779762 TTGAAAACAGAAAT
1 TTGAAAACAGAAAT
82779776 AAAAACATCA
Statistics
Matches: 212, Mismatches: 21, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
72 7 0.03
73 69 0.33
74 5 0.02
75 20 0.09
76 86 0.41
77 25 0.12
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:82780616 original size:43 final size:44
Alignment explanation
Indices: 82780535--82780653 Score: 145
Period size: 43 Copynumber: 2.7 Consensus size: 44
82780525 CATTAGAATG
* * *
82780535 CCCTTTT-GGGTTTTCATCTTAAT-CTTTTGTGTTAATCAAGACA
1 CCCTTTTCGGGTTTTCACCTTGATCCTTTT-TATTAATCAAGACA
*
82780578 CCCTTTTCGGGTTTTCACCTTGATCCTTTTTATT-ATCAAGACG
1 CCCTTTTCGGGTTTTCACCTTGATCCTTTTTATTAATCAAGACA
*
82780621 CCTTTTTCGGGTTTTCACCTTGATTCCCTTTTT
1 CCCTTTTCGGGTTTTCACCTTGA-T-CCTTTTT
82780654 TTTTAGGCAT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
43 37 0.55
44 18 0.27
45 12 0.18
ACGTcount: A:0.15, C:0.24, G:0.13, T:0.48
Consensus pattern (44 bp):
CCCTTTTCGGGTTTTCACCTTGATCCTTTTTATTAATCAAGACA
Found at i:82784584 original size:128 final size:128
Alignment explanation
Indices: 82784356--82784614 Score: 518
Period size: 128 Copynumber: 2.0 Consensus size: 128
82784346 ATATTGAGCA
82784356 TTACTCTGGAGAAGACTTAGAAACTACAAGGAGATCCACAGCAGTCCAATTGTTCAAAACAAATC
1 TTACTCTGGAGAAGACTTAGAAACTACAAGGAGATCCACAGCAGTCCAATTGTTCAAAACAAATC
82784421 CAGGAGGACAAGGACGTATCATTGAAACATCTTTAATTACGTCATTTCCTTTGTCAATGACAT
66 CAGGAGGACAAGGACGTATCATTGAAACATCTTTAATTACGTCATTTCCTTTGTCAATGACAT
82784484 TTACTCTGGAGAAGACTTAGAAACTACAAGGAGATCCACAGCAGTCCAATTGTTCAAAACAAATC
1 TTACTCTGGAGAAGACTTAGAAACTACAAGGAGATCCACAGCAGTCCAATTGTTCAAAACAAATC
82784549 CAGGAGGACAAGGACGTATCATTGAAACATCTTTAATTACGTCATTTCCTTTGTCAATGACAT
66 CAGGAGGACAAGGACGTATCATTGAAACATCTTTAATTACGTCATTTCCTTTGTCAATGACAT
82784612 TTA
1 TTA
82784615 TACTGACATT
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
128 131 1.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (128 bp):
TTACTCTGGAGAAGACTTAGAAACTACAAGGAGATCCACAGCAGTCCAATTGTTCAAAACAAATC
CAGGAGGACAAGGACGTATCATTGAAACATCTTTAATTACGTCATTTCCTTTGTCAATGACAT
Found at i:82787407 original size:26 final size:26
Alignment explanation
Indices: 82787378--82787430 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
82787368 TCAAACATGC
82787378 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
82787404 ATTTTGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
82787430 A
1 A
82787431 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.40
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:82789024 original size:26 final size:26
Alignment explanation
Indices: 82788915--82789016 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
82788905 CATGAAATTC
82788915 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
82788941 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
82788967 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
82788993 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
82789017 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:82789035 original size:10 final size:10
Alignment explanation
Indices: 82789020--82789044 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
82789010 CCTAACCTTT
82789020 TATCAATTTG
1 TATCAATTTG
82789030 TATCAATTTG
1 TATCAATTTG
82789040 TATCA
1 TATCA
82789045 TAAATTATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.48
Consensus pattern (10 bp):
TATCAATTTG
Found at i:82792895 original size:12 final size:12
Alignment explanation
Indices: 82792860--82792911 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
82792850 TAAAATAAAG
82792860 TAATAAGTGATAA
1 TAATAAGT-ATAA
*
82792873 TAAT--G-AAAA
1 TAATAAGTATAA
82792882 TAATAAGTATAA
1 TAATAAGTATAA
*
82792894 TAATAAATATAA
1 TAATAAGTATAA
82792906 TAATAA
1 TAATAA
82792912 ACATAACACT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
9 7 0.21
11 2 0.06
12 20 0.61
13 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
TAATAAGTATAA
Found at i:82792901 original size:19 final size:19
Alignment explanation
Indices: 82792840--82792902 Score: 67
Period size: 21 Copynumber: 3.2 Consensus size: 19
82792830 CAAATAACAC
82792840 ATAATAA-TATTAA-AATAA
1 ATAATAAGTA-TAATAATAA
82792858 AGTAATAAGTGATAATAATGAAA
1 A-TAATAAGT-ATAATAAT--AA
82792881 ATAATAAGTATAATAATAA
1 ATAATAAGTATAATAATAA
82792900 ATA
1 ATA
82792903 TAATAATAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 11
0.78 0.00 0.22
Matches are distributed among these distances:
18 1 0.03
19 11 0.28
20 4 0.10
21 12 0.31
22 8 0.21
23 3 0.08
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.30
Consensus pattern (19 bp):
ATAATAAGTATAATAATAA
Found at i:82792912 original size:12 final size:12
Alignment explanation
Indices: 82792880--82792917 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
82792870 TAATAATGAA
*
82792880 AATAATAAGTAT
1 AATAATAAATAT
82792892 AATAATAAATAT
1 AATAATAAATAT
*
82792904 AATAATAAACAT
1 AATAATAAATAT
82792916 AA
1 AA
82792918 CACTATATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (12 bp):
AATAATAAATAT
Found at i:82793076 original size:3 final size:3
Alignment explanation
Indices: 82793063--82793099 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
82793053 ATAGTTAAAT
*
82793063 ATA AT- ATA ATA ATA ATA ATA ATA AT- ATA AAA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
82793100 GTGATAACAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:82802358 original size:21 final size:21
Alignment explanation
Indices: 82802334--82802374 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
82802324 GTTCTGCTCC
*
82802334 GCCTCCCTCGCTGCTGCCTCT
1 GCCTCCCGCGCTGCTGCCTCT
*
82802355 GCCTCCCGCTCTGCTGCCTC
1 GCCTCCCGCGCTGCTGCCTC
82802375 CGCTCTAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.00, C:0.54, G:0.20, T:0.27
Consensus pattern (21 bp):
GCCTCCCGCGCTGCTGCCTCT
Found at i:82804178 original size:22 final size:24
Alignment explanation
Indices: 82804138--82804196 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
82804128 GTTTAATTAG
* *
82804138 GGTTTATTAAATCAGGGTT-TA-T
1 GGTTTATTAAATTACGGTTATAGT
82804160 GGTTTATTAAATTACGGTTATAGT
1 GGTTTATTAAATTACGGTTATAGT
* *
82804184 GTTTTATTTAATT
1 GGTTTATTAAATT
82804197 TTTAAGTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 17 0.55
23 2 0.06
24 12 0.39
ACGTcount: A:0.27, C:0.03, G:0.19, T:0.51
Consensus pattern (24 bp):
GGTTTATTAAATTACGGTTATAGT
Found at i:82804275 original size:21 final size:20
Alignment explanation
Indices: 82804247--82804301 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
82804237 AATGATTTTA
82804247 TTATTAGGGTTTTGGGTGTG
1 TTATTAGGGTTTTGGGTGTG
* *
82804267 TTAATTAGGGTTTTTGGTTTG
1 TT-ATTAGGGTTTTGGGTGTG
82804288 TT-TTAGGGTTTTGG
1 TTATTAGGGTTTTGG
82804302 ATTTTATTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.35
20 2 0.06
21 18 0.58
ACGTcount: A:0.11, C:0.00, G:0.35, T:0.55
Consensus pattern (20 bp):
TTATTAGGGTTTTGGGTGTG
Found at i:82804316 original size:21 final size:21
Alignment explanation
Indices: 82804240--82804320 Score: 73
Period size: 21 Copynumber: 4.0 Consensus size: 21
82804230 TAAGAAAAAT
82804240 GATTTTATTATTAGGGTTTTG
1 GATTTTATTATTAGGGTTTTG
*
82804261 GGTGTGTTA--ATTAGGGTTTTTG
1 GAT-T-TTATTATTAGGG-TTTTG
*
82804283 G--TTTGTT-TTAGGGTTTTG
1 GATTTTATTATTAGGGTTTTG
*
82804301 GATTTTATTGTTAGGGTTTT
1 GATTTTATTATTAGGGTTTT
82804321 TAGTGTTTAG
Statistics
Matches: 49, Mismatches: 3, Indels: 16
0.72 0.04 0.24
Matches are distributed among these distances:
18 8 0.16
19 7 0.14
20 5 0.10
21 19 0.39
22 7 0.14
23 3 0.06
ACGTcount: A:0.14, C:0.00, G:0.30, T:0.57
Consensus pattern (21 bp):
GATTTTATTATTAGGGTTTTG
Found at i:82817131 original size:17 final size:18
Alignment explanation
Indices: 82817105--82817138 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
82817095 TAATTTTGCA
82817105 TAAATATGAATTATAGAT
1 TAAATATGAATTATAGAT
*
82817123 TAAAT-TGAATTCTAGA
1 TAAATATGAATTATAGA
82817139 AGTACTTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (18 bp):
TAAATATGAATTATAGAT
Found at i:82820751 original size:35 final size:34
Alignment explanation
Indices: 82820683--82820751 Score: 93
Period size: 35 Copynumber: 2.0 Consensus size: 34
82820673 GTAAGTAATT
*
82820683 TATCCTCTTTCCTATTTGACAATACATGTTTTTA
1 TATCCTCTTTCCTATTTGACAATACATGGTTTTA
* **
82820717 TATCCTCTTTTCTTATTTGACAATTTATGGTTTTA
1 TATCCTC-TTTCCTATTTGACAATACATGGTTTTA
82820752 ATTTGATACG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
34 7 0.23
35 23 0.77
ACGTcount: A:0.22, C:0.17, G:0.07, T:0.54
Consensus pattern (34 bp):
TATCCTCTTTCCTATTTGACAATACATGGTTTTA
Found at i:82836863 original size:17 final size:18
Alignment explanation
Indices: 82836813--82836923 Score: 67
Period size: 17 Copynumber: 6.2 Consensus size: 18
82836803 AAATTAACTA
82836813 ATTTAATATATTA-TTTCT
1 ATTT-ATATATTATTTTCT
82836831 A-TTAT-TATTATGTTTCT
1 ATTTATATATTAT-TTTCT
82836848 ATTTATAT-TTATTTTCTT
1 ATTTATATATTATTTTC-T
* *
82836866 ATTCTA-ATACTATTAT-T
1 ATT-TATATATTATTTTCT
*
82836883 ATTTATCTATTTATATTTCT
1 ATTTATATA-TTAT-TTTCT
*
82836903 A-CTAT-TATTATATTTCT
1 ATTTATATATTAT-TTTCT
82836920 ATTT
1 ATTT
82836924 CTATTTTTAT
Statistics
Matches: 74, Mismatches: 7, Indels: 24
0.70 0.07 0.23
Matches are distributed among these distances:
15 5 0.07
16 4 0.05
17 29 0.39
18 21 0.28
19 13 0.18
20 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.01, T:0.63
Consensus pattern (18 bp):
ATTTATATATTATTTTCT
Found at i:82836896 original size:29 final size:28
Alignment explanation
Indices: 82836872--82836948 Score: 84
Period size: 29 Copynumber: 2.6 Consensus size: 28
82836862 TCTTATTCTA
82836872 ATACTATTATTATTTATCTA-TTTATATTT
1 ATACTATTATTATTT-TCTATTTTAT-TTT
*
82836901 CTACTATTATTATATTTCTATTTCTATTTTT
1 ATACTATTATTAT-TTTCTATTT-TA-TTTT
*
82836932 ATACTAATATTATTTTC
1 ATACTATTATTATTTTC
82836949 GTTATTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
29 16 0.39
30 8 0.20
31 16 0.39
32 1 0.02
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.61
Consensus pattern (28 bp):
ATACTATTATTATTTTCTATTTTATTTT
Found at i:82836922 original size:43 final size:43
Alignment explanation
Indices: 82836833--82836914 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
82836823 TTATTTCTAT
** * *
82836833 TATTATTATGTTTCTATTTATATTTATTTTCTTATTCTAATAC
1 TATTATTATGTTTCTATTTATATTTATACTATTATTATAATAC
*
82836876 TATTATTAT-TTATCTATTTATATTTCTACTATTATTATA
1 TATTATTATGTT-TCTATTTATATTTATACTATTATTATA
82836915 TTTCTATTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.28, C:0.09, G:0.01, T:0.62
Consensus pattern (43 bp):
TATTATTATGTTTCTATTTATATTTATACTATTATTATAATAC
Found at i:82837150 original size:25 final size:24
Alignment explanation
Indices: 82837054--82837175 Score: 95
Period size: 25 Copynumber: 4.9 Consensus size: 24
82837044 TATAACGCTC
* *
82837054 ATTTTAAATTTTTATACATTATTT
1 ATTTTAAATTTTTATATATTATAT
* * *
82837078 ACTTTAATATTTTCATATATTATGT
1 ATTTTAA-ATTTTTATATATTATAT
*
82837103 ATTTTAAACTTTTTTTACATATTATAT
1 ATTTTAAA---TTTTTATATATTATAT
*
82837130 ATTTTGAATTGTTTATATATTAT-T
1 ATTTTAAATT-TTTATATATTATAT
* *
82837154 -TTTAAAGAGTTTTATATATTAT
1 ATTTTAA-ATTTTTATATATTAT
82837176 TTTATCTTGA
Statistics
Matches: 79, Mismatches: 13, Indels: 13
0.75 0.12 0.12
Matches are distributed among these distances:
23 16 0.20
24 12 0.15
25 31 0.39
27 20 0.25
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.59
Consensus pattern (24 bp):
ATTTTAAATTTTTATATATTATAT
Found at i:82847594 original size:27 final size:27
Alignment explanation
Indices: 82847564--82847741 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
82847554 ATATTGAGTC
* *
82847564 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
82847591 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
82847618 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
82847646 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
82847673 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
82847700 CGCACACTTAGTGCAACATAGTTAAAT
1 CGCACACTTAGTGCTACATAATCAACT
82847727 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
82847742 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:82847703 original size:82 final size:81
Alignment explanation
Indices: 82847585--82847740 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
82847575 TGCTATATAA
* *
82847585 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
82847650 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
82847667 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTTAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
82847731 CACTTAGTGC
65 CACTTAGTGC
82847741 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:82847730 original size:54 final size:54
Alignment explanation
Indices: 82847564--82847740 Score: 196
Period size: 54 Copynumber: 3.3 Consensus size: 54
82847554 ATATTGAGTC
* * * *
82847564 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* ** * *
82847618 CGCACACTTAGTGC-TACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATC-AACTCGCACACTTAGTGCAACATAGTCAAAT
* ** *
82847673 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTTAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
82847727 CGCACACTTAGTGC
1 CGCACACTTAGTGC
82847741 TGTACAATTT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 56 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:82855231 original size:46 final size:45
Alignment explanation
Indices: 82855163--82855292 Score: 197
Period size: 46 Copynumber: 2.8 Consensus size: 45
82855153 GAAATTACAG
*
82855163 ATCCTATACTCCTGAGACGCAGTGGGATGGATTGGAGAAAATGAAA
1 ATCCTATAC-CCTGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
* * *
82855209 ATCCTATACCCTTGAGATGCAGTGGGATGGATTGAAGAAAATGCAG
1 ATCCTATACCC-TGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
82855255 ATCCTATACCCCTGAGACGCAGTGGGATGGATTGAAGA
1 ATCCTATA-CCCTGAGACGCAGTGGGATGGATTGAAGA
82855293 GGATTACAGA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
45 2 0.03
46 72 0.94
47 3 0.04
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (45 bp):
ATCCTATACCCTGAGACGCAGTGGGATGGATTGAAGAAAATGAAA
Found at i:82855512 original size:132 final size:131
Alignment explanation
Indices: 82855294--82855751 Score: 553
Period size: 132 Copynumber: 3.5 Consensus size: 131
82855284 GATTGAAGAG
* * * *
82855294 GATTACAGATCTTATCTCCCTAAGCAGTACTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCC
1 GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGACGAATCTTATCTTCCT
* * * *
82855359 AAGGTAGTAGGGAAGCTGATTTAAGCCACTAGCCTTATCTCTCTGAGCAGTAGTGGAGCAAGCTA
66 GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTC-CTGAGCAGCAGTGGAGCAAGCTG
82855424 AA
130 AA
* * *
82855426 GATTACAAATCTTATCTCTCTAAGAAGTAGTAGAGCAGATCGAAGACGATGAATCTTATCTTCCT
1 GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGACGAATCTTATCTTCCT
* *
82855491 GAGGTAGTAGGGAAGCAGATTTAAGCTACTAGCCTTATCTGCCTGAGCAGCAGTGGAGCAGGCTG
66 GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCT-CCTGAGCAGCAGTGGAGCAAGCTG
82855556 AA
130 AA
* * * * * * *
82855558 GATTGCAGATTTTATCTCCCTAAGCAGTAGTGGAACAGATCGAGGACGACGAATCTTATCTT-TT
1 GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGACGAATCTTATCTTCCT
* * * *
82855622 CGAGGTAATAGGGAAGCAGATTTAAGCCACTGGCTTTATCTCCCTGAGTAGCAGTGGAG-AAGGC
66 -GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCT-CCTGAGCAGCAGTGGAGCAA-GC
82855686 TGAA
128 TGAA
** * * * * *
82855690 GATTGTAGATCTTATCTTCCTAAAAAAGTAGT-GAAGTAGATCAAAGACGGCGAATCTTATCT
1 GATTACAGATCTTATCTCCCT-AAGAAGTAGTAG-AGCAGATCGAAGACGACGAATCTTATCT
82855752 CCATAAAGCA
Statistics
Matches: 281, Mismatches: 40, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
131 2 0.01
132 247 0.88
133 32 0.11
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (131 bp):
GATTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACGACGAATCTTATCTTCCT
GAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCTTATCTCCTGAGCAGCAGTGGAGCAAGCTGA
A
Found at i:82855914 original size:89 final size:89
Alignment explanation
Indices: 82855727--82855906 Score: 207
Period size: 89 Copynumber: 2.0 Consensus size: 89
82855717 GTAGTGAAGT
* *
82855727 AGATCAAAGACGGCGAATCTTATCTCCATAAAGCAGCAATGAAACAGATTTAGGCCACCAGCCTC
1 AGATCGAAGACGGCGAATCTTATCTCCATAAAGCAGCAATGAAACAGATTTAAGCCACCAGCCTC
** * *
82855792 ATCTCCCTAAAGTAGCAGTGGGGT
66 ATCTCCCTAAAGTAGCAAAGGAGC
* * * ** * * *
82855816 AGATCGAAGACGGTGAATCTTATTTTCATGTAGCAGCAATGAAGCAGGTTTAAGCCACCAGCCTT
1 AGATCGAAGACGGCGAATCTTATCTCCATAAAGCAGCAATGAAACAGATTTAAGCCACCAGCCTC
* * *
82855881 ATCTCCTTGAGGTAGCAAAGGAGC
66 ATCTCCCTAAAGTAGCAAAGGAGC
82855905 AG
1 AG
82855907 GTTGAAGATA
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
89 74 1.00
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.22
Consensus pattern (89 bp):
AGATCGAAGACGGCGAATCTTATCTCCATAAAGCAGCAATGAAACAGATTTAAGCCACCAGCCTC
ATCTCCCTAAAGTAGCAAAGGAGC
Found at i:82855949 original size:45 final size:45
Alignment explanation
Indices: 82855900--82856316 Score: 415
Period size: 45 Copynumber: 9.3 Consensus size: 45
82855890 AGGTAGCAAA
* * *
82855900 GGAGCAGGTTGAAGATAGTAGGTCTTATCTCCCTGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
*
82855945 GGAGCAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* * *
82855990 GAAGTAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
** ** * * * * * *
82856035 GGAATATTTTGAAGATAACAAACCTCATCTCTCTAAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* *
82856080 AGAGCAGGTTGAAG-TAGCA-AGTCTTATCTCCCTGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGA-TCTTATCTCCCTGAAGTTGCAGT
** * *
82856124 GGAGCAGGCTGAAGATAGCAGGTCTTATCTCCATGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* * * *
82856169 AGAGCAGAATGAAGATAGCAAATCTTATCTTCCTGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
** * * * * ** *
82856214 GGAATAGATTGAAGATAACAAACCTCATCTATCTGAAGTTGCAAT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* * * * * *
82856259 GGAGCAGACTAAAAATAACAGGTTTTATCTCCCTGAAGTTGCAGT
1 GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
* *
82856304 GGAGTAGGTTGAA
1 GGAGCAGATTGAA
82856317 ATTTAGGTTG
Statistics
Matches: 304, Mismatches: 65, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
43 1 0.00
44 35 0.12
45 268 0.88
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (45 bp):
GGAGCAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGCAGT
Found at i:82856121 original size:179 final size:179
Alignment explanation
Indices: 82855901--82856307 Score: 591
Period size: 179 Copynumber: 2.3 Consensus size: 179
82855891 GGTAGCAAAG
*
82855901 GAGCAGGTTGAAGATAGTAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAG
1 GAGCAGGTTGAAG-TAGCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAG
* * * *
82855966 ATCTTATCTCCCTGAAGTTGCAGT-GAAGTAGACTGAAGATAGCAGATCTTATCTCCCTGAAGTT
65 ATCTTATCTCCATGAAGTTGCAGTAG-AGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTT
** * *
82856030 GCAGTGGAATATTTTGAAGATAACAAACCTCATCTCTCTAAAGTTGCAGTA
129 GCAGTGGAATAGATTGAAGATAACAAACCTCATCTATCTAAAGTTGCAATA
* * *
82856081 GAGCAGGTTGAAGTAGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCTGAAGATAGCAGG
1 GAGCAGGTTGAAGTAGCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
*
82856146 TCTTATCTCCATGAAGTTGCAGTAGAGCAGAATGAAGATAGCAAATCTTATCTTCCTGAAGTTGC
66 TCTTATCTCCATGAAGTTGCAGTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
* *
82856211 AGTGGAATAGATTGAAGATAACAAACCTCATCTATCTGAAGTTGCAATG
131 AGTGGAATAGATTGAAGATAACAAACCTCATCTATCTAAAGTTGCAATA
* ** * * *
82856260 GAGCAGACTAAAAATAACAGGTTTTATCTCCCTGAAGTTGCAGTGGAG
1 GAGCAG-GTTGAAGTAGCAGGTCTTATCTCCCTGAAGTTGCAGTGGAG
82856308 TAGGTTGAAA
Statistics
Matches: 203, Mismatches: 22, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
179 155 0.76
180 48 0.24
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (179 bp):
GAGCAGGTTGAAGTAGCAGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAGA
TCTTATCTCCATGAAGTTGCAGTAGAGCAGAATGAAGATAGCAAATCTTATCTCCCTGAAGTTGC
AGTGGAATAGATTGAAGATAACAAACCTCATCTATCTAAAGTTGCAATA
Found at i:82857342 original size:29 final size:29
Alignment explanation
Indices: 82857305--82857415 Score: 82
Period size: 29 Copynumber: 3.8 Consensus size: 29
82857295 ATATTATTGC
* *
82857305 TATTATTATTATGTTTCTATTTATATTTA
1 TATTGTTATTATATTTCTATTTATATTTA
* * * *
82857334 TTTTGTTATTCTAATACTA-TTATTATTTA
1 TATTGTTATTATATTTCTATTTA-TATTTA
* ** * *
82857363 TCTAATTTTTAT-TTATCTATTTATATTTC
1 TATTGTTATTATATT-TCTATTTATATTTA
*
82857392 TACTGTTATTATATTTCTATTTAT
1 TATTGTTATTATATTTCTATTTAT
82857416 TATATTTCTA
Statistics
Matches: 59, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
28 4 0.07
29 50 0.85
30 5 0.08
ACGTcount: A:0.26, C:0.07, G:0.03, T:0.64
Consensus pattern (29 bp):
TATTGTTATTATATTTCTATTTATATTTA
Found at i:82857376 original size:15 final size:14
Alignment explanation
Indices: 82857320--82857436 Score: 62
Period size: 15 Copynumber: 8.1 Consensus size: 14
82857310 TTATTATGTT
*
82857320 TCTATTTATATTTA
1 TCTATTTTTATTTA
*
82857334 T-T-TTGTTATTCTAA
1 TCTATTTTTATT-T-A
*
82857348 TACTATTATTATTTA
1 T-CTATTTTTATTTA
82857363 TCTAATTTTTATTTA
1 TCT-ATTTTTATTTA
* *
82857378 TCTATTTATATTTC
1 TCTATTTTTATTTA
* *
82857392 TACTGTTATTATATT-
1 T-CTATTTTTAT-TTA
82857407 TCTATTTATTATATT-
1 TCTATTT-TTAT-TTA
*
82857422 TCTATTTCTATTTA
1 TCTATTTTTATTTA
82857436 T
1 T
82857437 ATACTAATAT
Statistics
Matches: 81, Mismatches: 12, Indels: 20
0.72 0.11 0.18
Matches are distributed among these distances:
12 6 0.07
13 4 0.05
14 23 0.28
15 37 0.46
16 4 0.05
17 7 0.09
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (14 bp):
TCTATTTTTATTTA
Found at i:82857399 original size:58 final size:58
Alignment explanation
Indices: 82857320--82857436 Score: 139
Period size: 58 Copynumber: 2.0 Consensus size: 58
82857310 TTATTATGTT
** * *
82857320 TCTATTTATATTTATTTTGTTATTCTAATACTA-TTATTAT-TTATCTAATTTTTATTTA
1 TCTATTTATATTTATACTGTTATTATAATACTATTTATTATATT-TCT-ATTTCTATTTA
* * *
82857378 TCTATTTATATTTCTACTGTTATTATATTTCTATTTATTATATTTCTATTTCTATTTA
1 TCTATTTATATTTATACTGTTATTATAATACTATTTATTATATTTCTATTTCTATTTA
82857436 T
1 T
82857437 ATACTAATAT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
58 38 0.76
59 10 0.20
60 2 0.04
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (58 bp):
TCTATTTATATTTATACTGTTATTATAATACTATTTATTATATTTCTATTTCTATTTA
Found at i:82857401 original size:44 final size:44
Alignment explanation
Indices: 82857348--82857467 Score: 108
Period size: 44 Copynumber: 2.8 Consensus size: 44
82857338 GTTATTCTAA
82857348 TACTATTATTAT-TTATCTAATTT-TTAT-TTATCTATTTATATTTC
1 TACTATTATTATATT-TCT-ATTTATTATATT-TCTATTTATATTTC
* * *
82857392 TACTGTTATTATATTTCTATTTATTATATTTCTATTTCTATTTATA
1 TACTATTATTATATTTCTATTTATTATATTTCTATTTATA-TT-TC
* *
82857438 TACTAATATTAT-TTTC-A-TTATTATTTTTCT
1 TACTATTATTATATTTCTATTTATTATATTTCT
82857468 TATATATGTT
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
43 16 0.25
44 28 0.43
45 10 0.15
46 11 0.17
ACGTcount: A:0.27, C:0.09, G:0.01, T:0.63
Consensus pattern (44 bp):
TACTATTATTATATTTCTATTTATTATATTTCTATTTATATTTC
Found at i:82857405 original size:17 final size:15
Alignment explanation
Indices: 82857383--82857428 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
82857373 ATTTATCTAT
82857383 TTATATTTCTACTGTTA
1 TTATATTTCTA-T-TTA
82857400 TTATATTTCTATTTA
1 TTATATTTCTATTTA
82857415 TTATATTTCTATTT
1 TTATATTTCTATTT
82857429 CTATTTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.24, C:0.09, G:0.02, T:0.65
Consensus pattern (15 bp):
TTATATTTCTATTTA
Found at i:82862914 original size:22 final size:22
Alignment explanation
Indices: 82862889--82862971 Score: 94
Period size: 22 Copynumber: 3.8 Consensus size: 22
82862879 AAGTAGCAGT
* *
82862889 AAAATAGCACAAAAACAGCATC
1 AAAACAGCACAAAAACACCATC
* * *
82862911 AAAACAACACCAAAATACCATC
1 AAAACAGCACAAAAACACCATC
*
82862933 AAAACAGCACAAAAATACCATC
1 AAAACAGCACAAAAACACCATC
* *
82862955 AAAATAGCACCAAAACA
1 AAAACAGCACAAAAACA
82862972 ACACCCAAAC
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 51 1.00
ACGTcount: A:0.60, C:0.27, G:0.05, T:0.08
Consensus pattern (22 bp):
AAAACAGCACAAAAACACCATC
Found at i:82862927 original size:33 final size:33
Alignment explanation
Indices: 82862889--82863026 Score: 120
Period size: 33 Copynumber: 4.1 Consensus size: 33
82862879 AAGTAGCAGT
82862889 AAAATAGCACAAAAACAGCATCAAAACAACACC
1 AAAATAGCACAAAAACAGCATCAAAACAACACC
* *
82862922 AAAATACCATC-AAAACAGCA-CAAAA-ATACCATC
1 AAAATAGCA-CAAAAACAGCATCAAAACA-A-CACC
* * * * * *
82862955 AAAATAGCACCAAAACAACACCCAAACAATAAC
1 AAAATAGCACAAAAACAGCATCAAAACAACACC
* *
82862988 AAAACAGCACAAAAAACAGCATCACCAACAACACC
1 AAAATAGCAC-AAAAACAGCATCA-AAACAACACC
82863023 AAAA
1 AAAA
82863027 ACCTGCAAAA
Statistics
Matches: 82, Mismatches: 15, Indels: 14
0.74 0.14 0.13
Matches are distributed among these distances:
31 1 0.01
32 7 0.09
33 47 0.57
34 15 0.18
35 12 0.15
ACGTcount: A:0.60, C:0.29, G:0.04, T:0.07
Consensus pattern (33 bp):
AAAATAGCACAAAAACAGCATCAAAACAACACC
Found at i:82862976 original size:11 final size:11
Alignment explanation
Indices: 82862889--82863008 Score: 69
Period size: 11 Copynumber: 10.8 Consensus size: 11
82862879 AAGTAGCAGT
* *
82862889 AAAATAGCACA
1 AAAACAGCACC
*
82862900 AAAACAGCATC
1 AAAACAGCACC
*
82862911 AAAACAACACC
1 AAAACAGCACC
* * *
82862922 AAAATACCATC
1 AAAACAGCACC
*
82862933 AAAACAGCACA
1 AAAACAGCACC
* * *
82862944 AAAATACCATC
1 AAAACAGCACC
*
82862955 AAAATAGCACC
1 AAAACAGCACC
*
82862966 AAAACAACACC
1 AAAACAGCACC
* ** *
82862977 CAAACAATAAC
1 AAAACAGCACC
*
82862988 AAAACAGCACAA
1 AAAACAGCAC-C
82863000 AAAACAGCA
1 AAAACAGCA
82863009 TCACCAACAA
Statistics
Matches: 80, Mismatches: 28, Indels: 1
0.73 0.26 0.01
Matches are distributed among these distances:
11 71 0.89
12 9 0.11
ACGTcount: A:0.61, C:0.28, G:0.05, T:0.07
Consensus pattern (11 bp):
AAAACAGCACC
Found at i:82863183 original size:9 final size:9
Alignment explanation
Indices: 82863169--82863210 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
82863159 ATCGAAGAAA
82863169 CATCGTCCT
1 CATCGTCCT
82863178 CATCGTCCT
1 CATCGTCCT
* *
82863187 CGTTGTCCT
1 CATCGTCCT
82863196 CATCGTCCT
1 CATCGTCCT
82863205 CATCGT
1 CATCGT
82863211 TCTTGCAACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.10, C:0.40, G:0.14, T:0.36
Consensus pattern (9 bp):
CATCGTCCT
Found at i:82866454 original size:10 final size:10
Alignment explanation
Indices: 82866439--82866466 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
82866429 AAATGAAGAA
82866439 GCTGAGCTGC
1 GCTGAGCTGC
82866449 GCTGAGCTGC
1 GCTGAGCTGC
82866459 GCTGAGCT
1 GCTGAGCT
82866467 TCAGGCTAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.39, T:0.21
Consensus pattern (10 bp):
GCTGAGCTGC
Found at i:82870530 original size:26 final size:27
Alignment explanation
Indices: 82870499--82870550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
82870489 ATTGTTATAA
*
82870499 AATAAAGAGAGATA-GAAAG-AATAAAT
1 AATAAAGA-AAATATGAAAGCAATAAAT
82870525 AATAAAGAAAATATGAAAGCAATAAA
1 AATAAAGAAAATATGAAAGCAATAAA
82870551 GAATGTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 13 0.57
27 6 0.26
ACGTcount: A:0.67, C:0.02, G:0.15, T:0.15
Consensus pattern (27 bp):
AATAAAGAAAATATGAAAGCAATAAAT
Found at i:82876183 original size:47 final size:46
Alignment explanation
Indices: 82876071--82876288 Score: 232
Period size: 47 Copynumber: 4.7 Consensus size: 46
82876061 GATTTCTTGT
* * * **
82876071 GTGCCAGTGTAAGACAAGTCCGGGACATGCTTCGGCCACA-TTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CACAGAGATGA
*
82876117 GTGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCACAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCACAGAGATGA
*
82876165 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGC-CTCGACGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAC-AGA-GATGA
* * *
82876212 -TAGCCAGTGCAAGACGTGTCTGGGACATGCATCGGCTA-AGAG-T-T
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGGC-ACAGAGATGA
*
82876256 GTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC
82876289 AGCATGTAAT
Statistics
Matches: 148, Mismatches: 15, Indels: 20
0.81 0.08 0.11
Matches are distributed among these distances:
44 28 0.19
45 3 0.02
46 25 0.17
47 69 0.47
48 23 0.16
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.22
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCACAGAGATGA
Found at i:82876288 original size:91 final size:94
Alignment explanation
Indices: 82876068--82876288 Score: 274
Period size: 94 Copynumber: 2.4 Consensus size: 94
82876058 TCAGATTTCT
* * * ** *
82876068 TGTGTGCCAGTGTAAGACAAGTCCGGGACATGCTTCGGCCACATTATGAGTGCCAGTATAAGACC
1 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCAGTACAAGACC
82876133 ATGTCTGGGACATGGCATCGGCACAGAGA
66 ATGTCTGGGACATGGCATCGGCACAGAGA
* * *
82876162 TGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGACGATGA-TAGCCAGTGCAAGA
1 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ACGATGAGT-GCCAGTACAAGA
*
82876226 -CGTGTCTGGGACAT-GCATCGGCTA-AGAG-
64 CCATGTCTGGGACATGGCATCGGC-ACAGAGA
*
82876254 T-TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATC
82876289 AGCATGTAAT
Statistics
Matches: 112, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
91 32 0.29
92 1 0.01
93 12 0.11
94 52 0.46
95 15 0.13
ACGTcount: A:0.25, C:0.21, G:0.31, T:0.23
Consensus pattern (94 bp):
TGTGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGATGAGTGCCAGTACAAGACC
ATGTCTGGGACATGGCATCGGCACAGAGA
Found at i:82877655 original size:46 final size:46
Alignment explanation
Indices: 82877605--82877780 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
82877595 TGATTGAGCA
82877605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82877651 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
82877696 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
82877744 CCCGAGCTCGTTGAGTGGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82877781 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82877765 original size:93 final size:93
Alignment explanation
Indices: 82877602--82877773 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
82877592 GGATGATTGA
* *
82877602 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
82877667 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 GGAGTCCGAGTTCGTGAGATGTAACTAG
*
82877695 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
82877760 GGAGTCCGAGTTCG
66 GGAGTCCGAGTTCG
82877774 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
GGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82885150 original size:46 final size:46
Alignment explanation
Indices: 82885095--82885270 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
82885085 TGATTGAGCA
82885095 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
82885141 TCCGTACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
82885186 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
82885234 -CCCAAGCTCGTTGAGTGGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
82885271 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 13, Indels: 20
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.07
46 56 0.52
47 27 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:82885255 original size:93 final size:93
Alignment explanation
Indices: 82885092--82885263 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
82885082 GGATGATTGA
**
82885092 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGTACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAGT
* *
82885157 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 GGAGTCCGAGTTCGTGAGATGTAACTAG
82885185 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAA-CTCGTTGAG
82885249 TGGAGTCCGAGTTCG
65 TGGAGTCCGAGTTCG
82885264 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAGT
GGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:82888483 original size:29 final size:29
Alignment explanation
Indices: 82888450--82888506 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
82888440 AGAACAAAAA
82888450 GTAAAATAAGTTAATCAAAACAATGATTG
1 GTAAAATAAGTTAATCAAAACAATGATTG
82888479 GTAAAATAAGTTAATCAAAACAATGATT
1 GTAAAATAAGTTAATCAAAACAATGATT
82888507 ACGTATACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (29 bp):
GTAAAATAAGTTAATCAAAACAATGATTG
Found at i:82888864 original size:3 final size:3
Alignment explanation
Indices: 82888858--82888891 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
82888848 ATAATAATAA
82888858 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
82888892 TAAAGTATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:82892624 original size:12 final size:13
Alignment explanation
Indices: 82892600--82892628 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
82892590 GGGCTATAAC
82892600 TATTGCATTTATT
1 TATTGCATTTATT
82892613 TATTGC-TTTATT
1 TATTGCATTTATT
82892625 TATT
1 TATT
82892629 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:82900523 original size:43 final size:43
Alignment explanation
Indices: 82900475--82900669 Score: 318
Period size: 43 Copynumber: 4.5 Consensus size: 43
82900465 GCTGGTATTA
*
82900475 TATTCGGGCCATCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
82900518 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
* * *
82900561 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
* *
82900604 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
**
82900647 TATGAGGGCCTTCGTGCCTAGCA
1 TATTCGGGCCTTCGTGCCTAGCA
82900670 GGCGTAACGC
Statistics
Matches: 145, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 145 1.00
ACGTcount: A:0.13, C:0.25, G:0.33, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAAGCTTAGTGCCGGTGATGTG
Found at i:82900685 original size:43 final size:43
Alignment explanation
Indices: 82900454--82900672 Score: 300
Period size: 43 Copynumber: 5.1 Consensus size: 43
82900444 GATAAATCCC
* * * * *
82900454 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCATCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTAGGGCCTTCGTGCCTA
* *
82900495 GCAAGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTAGGGCCTTCGTGCCTA
*
82900538 GCAAGCTTAGTGCCGGTGATGTGTATTCA-GGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATT-AGGGCCTTCGTGCCTA
* *
82900581 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTAGGGCCTTCGTGCCTA
* *
82900624 GCAGGCTTCGTGCCGGTGATGTGTATGAGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTAGGGCCTTCGTGCCTA
82900667 GCAGGC
1 GCAGGC
82900673 GTAACGCCGG
Statistics
Matches: 163, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
41 14 0.09
42 2 0.01
43 147 0.90
ACGTcount: A:0.14, C:0.24, G:0.33, T:0.29
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTAGGGCCTTCGTGCCTA
Found at i:82901114 original size:43 final size:45
Alignment explanation
Indices: 82901026--82901127 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 45
82901016 GCTTAGCAAA
82901026 CTATAATGCCGGTGAGATACTATTCGGGCCTTCGAGCCTAACAGG
1 CTATAATGCCGGTGAGATACTATTCGGGCCTTCGAGCCTAACAGG
82901071 CTATAATGCCGGT--GA-ACTGATATCGGGCC-TCGAGCCTAACAGG
1 CTATAATGCCGGTGAGATACT-AT-TCGGGCCTTCGAGCCTAACAGG
* *
82901114 CGA-AATGCTGGTGA
1 CTATAATGCCGGTGA
82901128 TTTGAGAAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
42 11 0.22
43 20 0.39
44 7 0.14
45 13 0.25
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (45 bp):
CTATAATGCCGGTGAGATACTATTCGGGCCTTCGAGCCTAACAGG
Found at i:82913498 original size:4 final size:4
Alignment explanation
Indices: 82913491--82913619 Score: 159
Period size: 4 Copynumber: 32.2 Consensus size: 4
82913481 ATTTGCCTAT
* * * *
82913491 TCTC TCTC TCTC TCTC TCTC TCTC CCTC CCTC TCCC TCCC TCTC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
* * * * * * *
82913539 TCTC TCCC TCTC CCTC TCCC TCTC CCTC TCCC TCTC CCTC TCCC TCTC
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC
82913587 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC T
1 TCTC TCTC TCTC TCTC TCTC TCTC TCTC TCTC T
82913620 ACGTAAAAGA
Statistics
Matches: 107, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
4 107 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (4 bp):
TCTC
Found at i:82913502 original size:6 final size:6
Alignment explanation
Indices: 82913491--82913619 Score: 159
Period size: 6 Copynumber: 21.5 Consensus size: 6
82913481 ATTTGCCTAT
* * * *
82913491 TCTCTC TCTCTC TCTCTC TCTCTC CCTCCC TCTCCC TCCCTC TCTCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
* * * * * * *
82913539 TCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC CCTCTC
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC
82913587 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCT
1 TCTCTC TCTCTC TCTCTC TCTCTC TCTCTC TCT
82913620 ACGTAAAAGA
Statistics
Matches: 115, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 115 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (6 bp):
TCTCTC
Found at i:82914004 original size:20 final size:20
Alignment explanation
Indices: 82913971--82914010 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
82913961 TCTCTCCCAA
*
82913971 AGTAATTATGAAAGTAAAAT
1 AGTAATTATAAAAGTAAAAT
* *
82913991 AGTAATTTTAAAAGTCAAAT
1 AGTAATTATAAAAGTAAAAT
82914011 TCAACAAAGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.12, T:0.33
Consensus pattern (20 bp):
AGTAATTATAAAAGTAAAAT
Found at i:82916236 original size:54 final size:54
Alignment explanation
Indices: 82916177--82916285 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
82916167 AATTGAAATA
82916177 AATATTTCTTTTGTAGCTACAATGCCAGTGTATCTTTATCCCTTCTTGAACACC
1 AATATTTCTTTTGTAGCTACAATGCCAGTGTATCTTTATCCCTTCTTGAACACC
82916231 AATATTTCTTTTGTAGCTACAATGCCAGTGTATCTTTATCCCTTCTTGAACACC
1 AATATTTCTTTTGTAGCTACAATGCCAGTGTATCTTTATCCCTTCTTGAACACC
82916285 A
1 A
82916286 TGAGCAATGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.25, C:0.24, G:0.11, T:0.40
Consensus pattern (54 bp):
AATATTTCTTTTGTAGCTACAATGCCAGTGTATCTTTATCCCTTCTTGAACACC
Found at i:82916416 original size:4 final size:4
Alignment explanation
Indices: 82916407--82916453 Score: 76
Period size: 4 Copynumber: 11.8 Consensus size: 4
82916397 TTCTCGCAGA
* *
82916407 ATAC ATAC ATTC ATTC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
82916454 GAGGTCATGA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (4 bp):
ATAC
Found at i:82917150 original size:12 final size:12
Alignment explanation
Indices: 82917121--82917157 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
82917111 GTTGAGTTTG
82917121 GATATATTCTT-
1 GATATATTCTTA
*
82917132 CATATATTCTTA
1 GATATATTCTTA
82917144 GATATATTCTTA
1 GATATATTCTTA
82917156 GA
1 GA
82917158 CATGCAAGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 10 0.43
12 13 0.57
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (12 bp):
GATATATTCTTA
Found at i:82918627 original size:31 final size:31
Alignment explanation
Indices: 82918589--82918654 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
82918579 GTCTGGGTAT
**
82918589 CAAATTGAACATTGAAGGCAAACTCAAGTAC
1 CAAATTGAACATTGAAACCAAACTCAAGTAC
*
82918620 CAAATTGAATATTGAAACCAAACTCAAGTAC
1 CAAATTGAACATTGAAACCAAACTCAAGTAC
82918651 CAAA
1 CAAA
82918655 ATAGTTTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.48, C:0.20, G:0.12, T:0.20
Consensus pattern (31 bp):
CAAATTGAACATTGAAACCAAACTCAAGTAC
Found at i:82920144 original size:38 final size:38
Alignment explanation
Indices: 82920096--82920171 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
82920086 CGTTTGAATG
* *
82920096 AAAAACGCCGCTAAAGAACGAGCATTAGCGGCGCTTTT
1 AAAAACGCCGCTAAAGAACAAGCATTAGCGACGCTTTT
* * *
82920134 AAAAATGCCGCTAAAGATCAAGTATTAGCGACGCTTTT
1 AAAAACGCCGCTAAAGAACAAGCATTAGCGACGCTTTT
82920172 TTTTAAAACG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (38 bp):
AAAAACGCCGCTAAAGAACAAGCATTAGCGACGCTTTT
Found at i:82920544 original size:22 final size:21
Alignment explanation
Indices: 82920519--82920568 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
82920509 GAGTTACTAT
*
82920519 TTTAAGGTTTATGGATTATGAG
1 TTTAAGGATTATGGATTATG-G
* *
82920541 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
82920562 TTTAAGG
1 TTTAAGG
82920569 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:82920549 original size:15 final size:14
Alignment explanation
Indices: 82920524--82920558 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
82920514 ACTATTTTAA
*
82920524 GGTTTATGGATTAT
1 GGTTTAGGGATTAT
82920538 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
82920553 GGTTTA
1 GGTTTA
82920559 TGGTTTAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.46
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:82920850 original size:22 final size:22
Alignment explanation
Indices: 82920825--82920867 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
82920815 ATTTATGATA
* *
82920825 TAGGGTTTTGGGTTTAAGGGTT
1 TAGGGGTTGGGGTTTAAGGGTT
*
82920847 TAGGGGTTGGGGTTTAGGGGT
1 TAGGGGTTGGGGTTTAAGGGT
82920868 AAATATAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.49, T:0.40
Consensus pattern (22 bp):
TAGGGGTTGGGGTTTAAGGGTT
Found at i:82925117 original size:19 final size:19
Alignment explanation
Indices: 82925067--82925134 Score: 113
Period size: 19 Copynumber: 3.7 Consensus size: 19
82925057 TTAAATCTCC
*
82925067 AAGAGTGCATATCATATCT
1 AAGATTGCATATCATATCT
82925086 AAGATTG--TATCATATCT
1 AAGATTGCATATCATATCT
82925103 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCT
82925122 AAGATTGCATATC
1 AAGATTGCATATC
82925135 CTTAAAGATT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
17 17 0.37
19 29 0.63
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (19 bp):
AAGATTGCATATCATATCT
Found at i:82925144 original size:36 final size:34
Alignment explanation
Indices: 82925067--82925134 Score: 102
Period size: 36 Copynumber: 2.0 Consensus size: 34
82925057 TTAAATCTCC
*
82925067 AAGAGTGCATATCATATCTAAGATTGTATCATATCT
1 AAGATTGCATATCATATCTAAGATTG--TCATATCT
82925103 AAGATTGCATATCATATCTAAGATTG-CATATC
1 AAGATTGCATATCATATCTAAGATTGTCATATC
82925135 CTTAAAGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 6 0.19
36 25 0.81
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (34 bp):
AAGATTGCATATCATATCTAAGATTGTCATATCT
Found at i:82925559 original size:45 final size:45
Alignment explanation
Indices: 82925492--82925593 Score: 132
Period size: 45 Copynumber: 2.3 Consensus size: 45
82925482 CGATATCTGC
* *
82925492 TATCTTTGATCTACTCCTCGTCTAATACAGAGACGCCAAATCTAT
1 TATCTTTGATCTACTCCCCGTCTAATACAAAGACGCCAAATCTAT
* * * *
82925537 TATCTTTGATTTGCTCCCCGTCTAATACAAAGATGCCAAATCTGT
1 TATCTTTGATCTACTCCCCGTCTAATACAAAGACGCCAAATCTAT
* *
82925582 CATCTTGGATCT
1 TATCTTTGATCT
82925594 GCTTCGATGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.35
Consensus pattern (45 bp):
TATCTTTGATCTACTCCCCGTCTAATACAAAGACGCCAAATCTAT
Found at i:82925837 original size:44 final size:45
Alignment explanation
Indices: 82925676--82925841 Score: 126
Period size: 44 Copynumber: 3.7 Consensus size: 45
82925666 TAATCTACTA
* ** *
82925676 TCTTCAGCTTGTTCCCTATAAACACAGGGATGCC--ATGCT-AAAA
1 TCTTCAACTTGTTCCCTATAAACACAGGGATGCCAAAT-CTGTTAG
** * * * *
82925719 TCTTCAA-TCTGCTTCGTTGTAAACACAGGAATGTCAGATCTGTTATG
1 TCTTCAACT-TG-TTCCCTATAAACACAGGGATGCCAAATCTGTTA-G
* * *
82925766 TCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATCTGTTA-
1 TCTTCAACTTGTTCCCTATAAACACAGGGATGCCAAATCTGTTAG
* *
82925810 TCTTTAACTTGTTCTCTATAAACACAGGGATG
1 TCTTCAACTTGTTCCCTATAAACACAGGGATG
82925842 TCATGTTAAA
Statistics
Matches: 96, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 45 0.47
45 2 0.02
46 31 0.32
47 8 0.08
48 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (45 bp):
TCTTCAACTTGTTCCCTATAAACACAGGGATGCCAAATCTGTTAG
Found at i:82925852 original size:134 final size:134
Alignment explanation
Indices: 82925660--82925938 Score: 396
Period size: 134 Copynumber: 2.1 Consensus size: 134
82925650 CGAATATGAA
* * *
82925660 GATGCCTAATCTACTATCTTCAGCTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCA
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAAGCTTCA
* * * *
82925725 ATCTGCTTCGTTGTAAACACAGGAATGTCAGATCTGTTATGTCTTCGATTTGTTCCCTGTAAACA
66 ATCTGCTTCGTTGCAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTATAAACA
82925790 CAGG
131 CAGG
** * * * * **
82925794 GATGCCAAATCTGTTATCTTTAACTTGTTCTCTATAAACACAGGGATGTCATGTTAAAAGCTTTG
1 GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAAGCTTCA
* *
82925859 ATCTGCTTCGTTGCAAGCATAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTATAAACA
66 ATCTGCTTCGTTGCAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTATAAACA
82925924 CAGG
131 CAGG
*
82925928 AATGCCAAATC
1 GATGCCAAATC
82925939 ATCTTGGATC
Statistics
Matches: 127, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
134 127 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (134 bp):
GATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAAGCTTCA
ATCTGCTTCGTTGCAAACACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTATAAACA
CAGG
Found at i:82926051 original size:44 final size:44
Alignment explanation
Indices: 82925991--82926822 Score: 393
Period size: 44 Copynumber: 18.9 Consensus size: 44
82925981 GTTGTTCTTC
* * * *
82925991 TCTTCGATATGTTCTCTGACAATACAGAGACGCCAAATCTTCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* *
82926035 TCTTCGATCTGCTCTCTGCCAATACAGAGACGCTAAATCTAT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
* * *
82926079 TTTTCGATCTGCTCTCTGGCAATACAGAGATGTCAAATCTGT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
82926123 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* ** * * * * * **
82926163 TCTTAGAAT-TGCT-TCAACGTAA-ACACGTGGAAGTCAAACCAGCTA
1 TCTTCG-ATCTGCTCTCTGC-CAATACA-G-AGATGCCAAATCTTCTA
*
82926208 TGTCTTCGATCTGCTCTCTGCCGAATACAGAGATCCCAAATCTGTC-A
1 --TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCT-TCTA
* * * *
82926255 TCTTTGATTTACTCTCTGCCAATACAGAGATGCCAAATCTGCTA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* *
82926299 TCTTTGATTTGCTCTCTGCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* ** * * * **
82926339 TCTTAGA-CTTGCT-TCAACGTAA-ACACGTGGAAGCCAAATCAGCTA
1 TCTTCGATC-TGCTCTCTGC-CAATACA-G-AGATGCCAAATCTTCTA
* * * * *
82926384 TGTTTTCAATTTGCTCTCCGCCGAATATAGAGATGCCAAATCTGTC-A
1 --TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCT-TCTA
* * * *
82926431 TTTTTGATCTGCTCTCTACCGGATACAGAGATGCCAAATCTGT-TA
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCT-TCTA
*
82926476 TCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
** * * ** * * * * * *
82926516 TCTTAAATTTG-TTTCAACGTAA-ACACATGAAAGCCAAATCAGCTGTG
1 TCTTCGATCTGCTCTCTGC-CAATACAGA-G-ATGCCAAATC--TTCTA
* * *
82926563 TCTTCGATCTGCTCTCCGCCGGATACAGAGATGCCGAATCTGTC-A
1 TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATCT-TCTA
* *
82926608 TCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAATCTGT-TA
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCT-TCTA
* * *
82926652 TTTTCGATATGCTCTCTGCCAATACAGAGATGTCAAA---TC-A
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
* * ** * * * * *
82926692 TCTTAGATTTGCT-TCAACGTAA-ACACATGAAAGCTAAAT-TAGCTA
1 TCTTCGATCTGCTCTCTGC-CAATACAGA-G-ATGCCAAATCT-TCTA
* *
82926737 TGTCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCAGTC-A
1 --TCTTCGATCTGCTCTCTGCC-AATACAGAGATGCCAAATC-TTCTA
* * *
82926784 TCTTCGATCTGTTCTCTGCCAATACAGAGACGCTAAATC
1 TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATC
82926823 ATCTTAGATT
Statistics
Matches: 595, Mismatches: 129, Indels: 128
0.70 0.15 0.15
Matches are distributed among these distances:
39 27 0.05
40 56 0.09
41 30 0.05
43 1 0.00
44 255 0.43
45 111 0.19
46 4 0.01
47 71 0.12
48 27 0.05
49 13 0.02
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (44 bp):
TCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCTTCTA
Found at i:82926280 original size:176 final size:176
Alignment explanation
Indices: 82926035--82926822 Score: 1123
Period size: 176 Copynumber: 4.5 Consensus size: 176
82926025 AAATCTTCTA
* * * * * *
82926035 TCTTCGATCTGCTCTCTGCC-AATACAGAGACGCTAAATCTATTAT-TTTCGATCTGCTCTCTGG
1 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATCTTT-GATCTGCTCTCTGC
*
82926098 CAATACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
65 CAATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
* * * *
82926163 TCTTAGAATTGCTTCAACGTAAACACGTGGAAGTCAAACCAGCTATG
130 TCTTAGAATTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * * *
82926210 TCTTCGATCTGCTCTCTGCCGAATACAGAGATCCCAAATCTGTCATCTTTGATTTACTCTCTGCC
1 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* * *
82926275 AATACAGAGATGCCAAATCTGCTATCTTTGATTTGCTCTCTGCCAATACAGAGATGCCAAATCAT
66 AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
* * *
82926340 CTTAGACTTGCTTCAACGTAAACACGTGGAAGCCAAATCAGCTATG
131 CTTAGAATTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * * * * *
82926386 TTTTCAATTTGCTCTCCGCCGAATATAGAGATGCCAAATCTGTCATTTTTGATCTGCTCTCTACC
1 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* *
82926451 GGATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
66 -AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
* *
82926516 TCTTA-AATTTGTTTCAACGTAAACACATGAAAGCCAAATCAGCTGTG
130 TCTTAGAA-TTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * *
82926563 TCTTCGATCTGCTCTCCGCCGGATACAGAGATGCCGAATCTGTCATCTTTGATCTACTCTCTGCC
1 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* * *
82926628 AATACAGAGATGCCAAATCTGTTATTTTCGATATGCTCTCTGCCAATACAGAGATGTCAAATCAT
66 AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
* * *
82926693 CTTAGATTTGCTTCAACGTAAACACATGAAAGCTAAATTAGCTATG
131 CTTAGAATTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
* * *
82926739 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTGTTCTCTGCC
1 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
* *
82926804 AATACAGAGACGCTAAATC
66 AATACAGAGATGCCAAATC
82926823 ATCTTAGATT
Statistics
Matches: 548, Mismatches: 60, Indels: 9
0.89 0.10 0.01
Matches are distributed among these distances:
175 20 0.04
176 367 0.67
177 161 0.29
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (176 bp):
TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATCTTTGATCTGCTCTCTGCC
AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
CTTAGAATTGCTTCAACGTAAACACATGAAAGCCAAATCAGCTATG
Found at i:82926494 original size:353 final size:352
Alignment explanation
Indices: 82926035--82926822 Score: 1168
Period size: 353 Copynumber: 2.2 Consensus size: 352
82926025 AAATCTTCTA
* * * * * * *
82926035 TCTTCGATCTGCTCTCTGCC-AATACAGAGACGCTAAATCTATTATTTTCGATCTGCTCTCTGGC
1 TCTTCAATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCC
*
82926099 AATACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
66 AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
* * * *
82926164 CTTAGAA-TTGCTTCAACGTAAACACGTGGAAGTCAAACCAGCTATGTCTTCGATCTGCTCTCTG
131 CTTA-AATTTGCTTCAACGTAAACACATGAAAGCCAAACCAGCTATGTCTTCGATCTGCTCTCCG
*
82926228 CCGAATACAGAGATCCCAAATCTGTCATCTTTGATTTACTCTCTGCCAATACAGAGATGCCAAAT
195 CCGAATACAGAGATCCCAAATCTGTCATCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAAT
*
82926293 CTGCTATCTTT-GATTTGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAAC
260 CTGCTAT-TTTCGATATGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAAC
* *
82926357 GTAAACACGTGGAAGCCAAATCAGCTATG
324 GTAAACACATGAAAGCCAAATCAGCTATG
* * * * *
82926386 TTTTCAATTTGCTCTCCGCCGAATATAGAGATGCCAAATCTGTCATTTTTGATCTGCTCTCTACC
1 TCTTCAATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCC
* *
82926451 GGATACAGAGATGCCAAATCTGTTATCTTTGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
66 -AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCA
* * *
82926516 TCTTAAATTTGTTTCAACGTAAACACATGAAAGCCAAATCAGCTGTGTCTTCGATCTGCTCTCCG
130 TCTTAAATTTGCTTCAACGTAAACACATGAAAGCCAAACCAGCTATGTCTTCGATCTGCTCTCCG
* * *
82926581 CCGGATACAGAGATGCCGAATCTGTCATCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAAT
195 CCGAATACAGAGATCCCAAATCTGTCATCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAAT
* * *
82926646 CTGTTATTTTCGATATGCTCTCTGCCAATACAGAGATGTCAAATCATCTTAGATTTGCTTCAACG
260 CTGCTATTTTCGATATGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACG
* *
82926711 TAAACACATGAAAGCTAAATTAGCTATG
325 TAAACACATGAAAGCCAAATCAGCTATG
* * * *
82926739 TCTTCGATCTGCTCTCCGCCGAATACAGAGATGCCAAATCAGTCATCTTCGATCTGTTCTCTGCC
1 TCTTCAATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCC
* *
82926804 AATACAGAGACGCTAAATC
66 AATACAGAGATGCCAAATC
82926823 ATCTTAGATT
Statistics
Matches: 387, Mismatches: 46, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
351 16 0.04
352 57 0.15
353 314 0.81
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (352 bp):
TCTTCAATCTGCTCTCCGCCGAATACAGAGATGCCAAATCTGTCATTTTCGATCTGCTCTCTGCC
AATACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGCCAATACAGAGATGCCAAATCAT
CTTAAATTTGCTTCAACGTAAACACATGAAAGCCAAACCAGCTATGTCTTCGATCTGCTCTCCGC
CGAATACAGAGATCCCAAATCTGTCATCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAATC
TGCTATTTTCGATATGCTCTCTGCCAATACAGAGATGCCAAATCATCTTAGACTTGCTTCAACGT
AAACACATGAAAGCCAAATCAGCTATG
Found at i:82926977 original size:131 final size:131
Alignment explanation
Indices: 82926608--82926970 Score: 462
Period size: 132 Copynumber: 2.8 Consensus size: 131
82926598 GAATCTGTCA
* * * * *
82926608 TCTTTGATCTACTCTCTGCCAATACAGAGATGCCAAATCT-GTTATTTTCGATATGCTCTCTGCC
1 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATTTAG-TATTTTCGATCTGCTCTCTGCC
* * * * *
82926672 AATACAGAGATGTCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCTAAATTAGCTA
65 AATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGATA
82926737 TG
130 TG
* * *
82926739 TCTTCGATCTGCTCTCC-GCCGAATACAGAGATGCCAAA-TCAGTCATCTTCGATCTGTTCTCTG
1 TCTTCGATCTGCTC-CCTGCC-AATACAGAGATGCCAAATTTAGT-ATTTTCGATCTGCTCTCTG
* * *
82926802 CCAATACAGAGACGCTAAATCATCTTAGATTTGTTTCAACGTAAACACGTGAAAGCCAAATCAGA
63 CCAATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGA
82926867 TATG
128 TATG
* * * *
82926871 TCTTCGATCTGCTCCCTGCCAATATAGAGACGCCAAATTTAGTATTTTCGATCTGCTCCCTGACA
1 TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATTTAGTATTTTCGATCTGCTCTCTGCCA
* * *
82926936 ATACAGAGACACCAAATCATCTTGGATCTGCTTCA
66 ATACAGAGACGCCAAATCATCTTAGATTTGCTTCA
82926971 GTGTAAATAC
Statistics
Matches: 198, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
131 81 0.41
132 117 0.59
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (131 bp):
TCTTCGATCTGCTCCCTGCCAATACAGAGATGCCAAATTTAGTATTTTCGATCTGCTCTCTGCCA
ATACAGAGACGCCAAATCATCTTAGATTTGCTTCAACGTAAACACATGAAAGCCAAATCAGATAT
G
Found at i:82930643 original size:17 final size:17
Alignment explanation
Indices: 82930621--82930654 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82930611 CATAAAACGA
82930621 ATTACAAATACACTTTC
1 ATTACAAATACACTTTC
82930638 ATTACAAATACACTTTC
1 ATTACAAATACACTTTC
82930655 GCCCGTAGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.00, T:0.35
Consensus pattern (17 bp):
ATTACAAATACACTTTC
Found at i:82932617 original size:22 final size:21
Alignment explanation
Indices: 82932587--82932652 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
82932577 TACAAATTAA
82932587 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
82932609 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
82932630 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
82932649 ATCT
1 ATCT
82932653 AAGATTGCAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:82932639 original size:19 final size:19
Alignment explanation
Indices: 82932604--82932665 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
82932594 AGATTACAAG
82932604 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
82932625 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
82932644 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
82932663 ATC
1 ATC
82932666 TTTAAAGATT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
20 1 0.02
21 8 0.20
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:82934577 original size:23 final size:23
Alignment explanation
Indices: 82934544--82935416 Score: 652
Period size: 23 Copynumber: 38.1 Consensus size: 23
82934534 ATATTAGTAG
*
82934544 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
*
82934567 TAAATACTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
** *
82934590 TAGTTGCTGGAAATTG-AGATGTT
1 TAAATGCTGCAAATTGAAG-TGTT
* * * * *
82934613 T-TATCGTTG-TAATTGAGGTGTA
1 TAAAT-GCTGCAAATTGAAGTGTT
* ** * *
82934635 TAAATGTTGTTAATTCAAATG-T
1 TAAATGCTGCAAATTGAAGTGTT
82934657 TAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
* **
82934681 TTAATGCTATAAATTGAAGTG-T
1 TAAATGCTGCAAATTGAAGTGTT
82934703 TAAACTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
* *
82934727 TGAATGCTGTAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* * *
82934750 TGAATGTTGTAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82934773 TAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGCAAATTGAAGTGTT
*
82934796 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82934819 TAAGTACTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
** * * *
82934842 TAGTTGTTGGACATTG-AGATGTT
1 TAAATGCTGCAAATTGAAG-TGTT
* * *
82934865 T-TATCGCTG-TAATTG-AGCTGTA
1 TAAAT-GCTGCAAATTGAAG-TGTT
* ** *
82934887 TAAATGTTGTTAATTGAGGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
*
82934910 AAAATGCTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82934933 TGAATGCTGTAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82934956 TAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82934979 TAAATGTTGCAAATTAAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* * *
82935002 TAAGTACTGCAAATTGAAGTATT
1 TAAATGCTGCAAATTGAAGTGTT
** * * *
82935025 TAGTTACTGGACATTG-AGATGTT
1 TAAATGCTGCAAATTGAAG-TGTT
* * * *
82935048 T-TATCGCTG-TAATTGAGGTGTA
1 TAAAT-GCTGCAAATTGAAGTGTT
* **
82935070 TAAATGTTGTTAATTG-AGATG-T
1 TAAATGCTGCAAATTGAAG-TGTT
*
82935092 TAAAGTGCTGCAAATTGAAGTGCT
1 TAAA-TGCTGCAAATTGAAGTGTT
* *
82935116 TAAATGCCGTAAATTGAAGTG-T
1 TAAATGCTGCAAATTGAAGTGTT
82935138 TAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
* * *
82935162 TGAATGTTGTAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* **
82935185 TAAATGCTGTAAATTGAAGTACT
1 TAAATGCTGCAAATTGAAGTGTT
*
82935208 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82935231 TAAGTACTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
** * *
82935254 TAGTTGCTGGACATTG-AGATGTT
1 TAAATGCTGCAAATTGAAG-TGTT
* * * * *
82935277 TTATTG-T-TATAATTGAGGTGTA
1 TAAATGCTGCA-AATTGAAGTGTT
* **
82935299 TAAATGTTGTTAATTG-AGATG-T
1 TAAATGCTGCAAATTGAAG-TGTT
82935321 TAAAGTGCTGCAAATTGAAGTGTT
1 TAAA-TGCTGCAAATTGAAGTGTT
*
82935345 TGAATGCTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
* *
82935368 TAAATGCTGTAAATTGAAGTGCT
1 TAAATGCTGCAAATTGAAGTGTT
*
82935391 TAAATGTTGCAAATTGAAGTGTT
1 TAAATGCTGCAAATTGAAGTGTT
82935414 TAA
1 TAA
82935417 GTACTTATTT
Statistics
Matches: 677, Mismatches: 139, Indels: 68
0.77 0.16 0.08
Matches are distributed among these distances:
21 1 0.00
22 83 0.12
23 566 0.84
24 27 0.04
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (23 bp):
TAAATGCTGCAAATTGAAGTGTT
Found at i:82934926 original size:183 final size:183
Alignment explanation
Indices: 82934715--82935205 Score: 768
Period size: 183 Copynumber: 2.7 Consensus size: 183
82934705 AACTGCTGCA
* ** * *
82934715 AATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
*
82934780 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTGTTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
**
82934845 TTGTTGGACATTGAGATGTTTTATCGCTGTAATTGAGCTGTATAAATGTTGTT
131 TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGCTGTATAAATGTTGTT
82934898 AATTGAGGTGTTAAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
1 AATTGAGGTGTTAAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
*
82934963 TGTAAATTGAAGTGCTTAAATGTTGCAAATTAAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
66 TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
*
82935028 TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGTTGTT
131 TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGCTGTATAAATGTTGTT
* * * * *
82935081 AATTGAGATGTTAAAGTGCTGCAAATTGAAGTGCTTAAATGCCGTAAATTGAAGTG-TTAAAGTG
1 AATTGAGGTGTTAAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAA-TG
* * * * * * *
82935145 CTGCAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTA
65 CTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTA
82935206 CTTAAATGTT
Statistics
Matches: 284, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
182 5 0.02
183 279 0.98
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.38
Consensus pattern (183 bp):
AATTGAGGTGTTAAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTAAATGC
TGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAAATTGAAGTATTTAG
TTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGCTGTATAAATGTTGTT
Found at i:82935306 original size:229 final size:227
Alignment explanation
Indices: 82934654--82935416 Score: 903
Period size: 229 Copynumber: 3.3 Consensus size: 227
82934644 TTAATTCAAA
* * **
82934654 TGTTAAAGTGCTGCAAATTGAAGTGTTTTAATGCTATAAATTGAAGTG-TTAAACTGCTGCAAAT
1 TGTTAAA-TGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAA-TGCTGCAAAT
* * * * * * *
82934718 TGAAGTGTTTGAATGCTGTAAATTGAAGTGTTTGAATGTTGTAAATTGAAGTGTTTAAATGCTGT
64 TGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGC
* ** * * * * * * * **
82934783 AAATTGAAGTGCTTAAATGTTGCAAATTGA-AGTGTTTAAGTACTGCA-AATTGAAGTGTTTAGT
129 AAATTGAAGTGTTTAGTTGCTGGACATTGAGA-TGTTT---TATTGTATAATTGAGGTGTATAAA
* ** *
82934846 TGTTG-GACATTGAGATGTTTTA-TCGCTG-TAATTG-AG
190 TGTTGTTA-ATTGAGATGTTAAAGT-GCTGCAAATTGAAG
* * * * * *
82934882 CTGTATAAATGTTGTTAATTGAGGTGTTAAAATGCTGCAAATTGAAGTGTTTGAATGCTGTAAAT
1 -TGT-TAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAAT
*
82934947 TGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTAAAGTGTTTAAGTACTGC
64 TGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGC
* * * *
82935012 AAATTGAAGTATTTAGTTACTGGACATTGAGATGTTTTATCGCTGTAATTGAGGTGTATAAATGT
129 AAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATTG-TATAATTGAGGTGTATAAATGT
82935077 TGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAG
193 TGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAG
* * * *
82935112 TGCTTAAATGCCGTAAATTGAAGTG-TTAAAGTGCTGCAAATTGAAGTGTTTGAATGTTGTAAAT
1 TG-TTAAATGCTGTAAATTGAAGTGTTTAAA-TGCTGCAAATTGAAGTGTTTAAATGCTGCAAAT
*
82935176 TGAAGTGTTTAAATGCTGTAAATTGAAGTACTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGC
64 TGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGC
82935241 AAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATTGTTATAATTGAGGTGTATAAATGT
129 AAATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATTG-TATAATTGAGGTGTATAAATGT
82935306 TGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAG
193 TGTTAATTGAGATGTTAAAGTGCTGCAAATTGAAG
* * * * *
82935341 TGTTTGAATGCTGCAAATTGAAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATT
1 TG-TTAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAATT
82935406 GAAGTGTTTAA
65 GAAGTGTTTAA
82935417 GTACTTATTT
Statistics
Matches: 463, Mismatches: 59, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
226 3 0.01
228 37 0.08
229 406 0.88
230 17 0.04
ACGTcount: A:0.32, C:0.06, G:0.23, T:0.38
Consensus pattern (227 bp):
TGTTAAATGCTGTAAATTGAAGTGTTTAAATGCTGCAAATTGAAGTGTTTAAATGCTGCAAATTG
AAGTGTTTAAATGCTGTAAATTGAAGTGCTTAAATGTTGCAAATTGAAGTGTTTAAGTACTGCAA
ATTGAAGTGTTTAGTTGCTGGACATTGAGATGTTTTATTGTATAATTGAGGTGTATAAATGTTGT
TAATTGAGATGTTAAAGTGCTGCAAATTGAAG
Found at i:82936146 original size:61 final size:61
Alignment explanation
Indices: 82936071--82936197 Score: 236
Period size: 61 Copynumber: 2.1 Consensus size: 61
82936061 AAGTGTATAG
* *
82936071 TTTAAAGTTTAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAGTATTA
1 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
82936132 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
1 TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
82936193 TTTAA
1 TTTAA
82936198 TTAAAATAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.41
Consensus pattern (61 bp):
TTTAAAGTTCAAATTTTAAAATTTAAACATAATATAATATTTACCATAGAAATAAATATTA
Found at i:82936354 original size:43 final size:43
Alignment explanation
Indices: 82936307--82936400 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
82936297 CTAAAGGTTG
** * *
82936307 TGACTTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAAAGCCA
1 TGACTTTTAGCAGCGCTTTTCCCACAAACACCACTAAAAGCCA
82936350 TGACTTTTAGCAGCGCTTTTCCCACAAACACCACTAAAAGCCA
1 TGACTTTTAGCAGCGCTTTTCCCACAAACACCACTAAAAGCCA
82936393 TGACTTTT
1 TGACTTTT
82936401 GCGGTGTTTC
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (43 bp):
TGACTTTTAGCAGCGCTTTTCCCACAAACACCACTAAAAGCCA
Found at i:82936797 original size:7 final size:7
Alignment explanation
Indices: 82936785--82936809 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
82936775 ATCTATATGA
82936785 ATGAAAT
1 ATGAAAT
82936792 ATGAAAT
1 ATGAAAT
82936799 ATGAAAT
1 ATGAAAT
82936806 ATGA
1 ATGA
82936810 TTATTAGATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (7 bp):
ATGAAAT
Found at i:82938540 original size:15 final size:16
Alignment explanation
Indices: 82938522--82938554 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
82938512 GTAAAAATTG
82938522 TTTTACTTTT-CTATA
1 TTTTACTTTTCCTATA
82938537 TTTTACTTTTCCTATA
1 TTTTACTTTTCCTATA
82938553 TT
1 TT
82938555 ATTCATGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.18, C:0.15, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTACTTTTCCTATA
Found at i:82951100 original size:206 final size:206
Alignment explanation
Indices: 82950721--82951270 Score: 827
Period size: 206 Copynumber: 2.7 Consensus size: 206
82950711 GCAGATCTGG
*
82950721 CTGAAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGC-AGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCT
* * *
82950786 AATTTGGC-TTCACGTGCTTACGATGAAGCAAATCTAAGATGATTTGGTATCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * * * *
82950850 AGAGCAGATCGAAGTTTGGCATCTCTATATTCGACGGAGGGTAGACACATAGCAGATTTAACCTT
130 AGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTT
*
82950915 CAGATGATTAGA
195 CAGATGACTAGA
*
82950927 CTGAAGTAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAA-ATCATAGCT
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGA-CATAGCT
* * * *
82950991 GATTTAGCTTTCACGTGCTTATGCTGAAG-AAAGTCTAAGATGATTTGGCATCTCTATATTGTTA
65 GATTTGGCTTTCACGTGCTTACGCTGAAGCAAA-TCTAAGATGATTTGGCATCTCTGTATTGTCA
* *
82951055 GAGAACAAATCAAAGTTTGGCGTCTCCATATTCGATGGAGGGTAGACACATAGCAGATCTAACCT
129 GAGAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCT
82951120 TCAGATGACTAGA
194 TCAGATGACTAGA
* * *
82951133 CTGAAGCAGATCCAAGATGGTTTGGTATCCTTGTGTTTACAAGGAGCAAATCGAAGACATAGCTG
1 CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
* ** * *
82951198 ATTTGGTTTTTGCTTGCTTACGCTGAAGCAAATTTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
82951263 GAACAAAT
131 GAACAAAT
82951271 TGAAGAAGCA
Statistics
Matches: 309, Mismatches: 30, Indels: 10
0.89 0.09 0.03
Matches are distributed among these distances:
204 1 0.00
205 63 0.20
206 241 0.78
207 4 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (206 bp):
CTGAAGCAGATCCAAGATGATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCTG
ATTTGGCTTTCACGTGCTTACGCTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
GAACAAATCAAAGTTTGGCATCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTTC
AGATGACTAGA
Found at i:82953089 original size:16 final size:17
Alignment explanation
Indices: 82953068--82953102 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
82953058 AAAAATTGTT
82953068 TTACTTTTC-TATATTA
1 TTACTTTTCATATATTA
82953084 TTACTTTTCATATATTA
1 TTACTTTTCATATATTA
82953101 TT
1 TT
82953103 TCATGTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.26, C:0.11, G:0.00, T:0.63
Consensus pattern (17 bp):
TTACTTTTCATATATTA
Found at i:82954427 original size:22 final size:22
Alignment explanation
Indices: 82954399--82954442 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
82954389 ATCACACCTA
82954399 AAAAGATTGGTGGCGACTCCCG
1 AAAAGATTGGTGGCGACTCCCG
82954421 AAAAGATTGGTGGCGACTCCCG
1 AAAAGATTGGTGGCGACTCCCG
82954443 TTTTCATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.32, T:0.18
Consensus pattern (22 bp):
AAAAGATTGGTGGCGACTCCCG
Found at i:82955100 original size:139 final size:139
Alignment explanation
Indices: 82954849--82955126 Score: 457
Period size: 139 Copynumber: 2.0 Consensus size: 139
82954839 GAAGATTTTG
* *
82954849 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCCCGAAGTAATAAAATGTCACATCCAA
1 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCACGAAGTAATAAAATGCCACATCCAA
* * *
82954914 TATGTTAGGACACAACATTTCAGACCCTCGAGAATAAGTTGGCCTTTCGATTTTCAAAACTCACG
66 TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGCCTTTCGATTTTCAAAACTCACA
82954979 TGTTTTAAT
131 TGTTTTAAT
* * * *
82954988 CTTGAGTAAATCGAAATGGATTTTAAAGACCTTCTTGTCACGAAGTAATAAAATGCCACGTCCAG
1 CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCACGAAGTAATAAAATGCCACATCCAA
* *
82955053 TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGTCTTTCGATTTTCAAAATTCACA
66 TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGCCTTTCGATTTTCAAAACTCACA
82955118 TGTTTTAAT
131 TGTTTTAAT
82955127 TTTAGAAGGT
Statistics
Matches: 128, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
139 128 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (139 bp):
CTTGAGTAAATCGAAATGGATTCTAAAGACCTTCTTGCCACGAAGTAATAAAATGCCACATCCAA
TACGTTAGGACACAACATTTCAGACCCACGAGAATAAGTTGGCCTTTCGATTTTCAAAACTCACA
TGTTTTAAT
Found at i:82955647 original size:3 final size:3
Alignment explanation
Indices: 82955639--82955758 Score: 73
Period size: 3 Copynumber: 38.7 Consensus size: 3
82955629 AAAAACATAT
* * * *
82955639 ATA ATA AT- ATG ACA ATA ATA ATA ACA ATA ATAA ATAA ATAA ATA ATG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A AT-A AT-A ATA ATA
* * * * * *
82955686 ATA ATA AAA ATA ATA GTA ATG ATA ATG GTA ATA ATAA ATA GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
*
82955732 ATA ACA ATA ATA CA-A ATA ATAA ATA AT
1 ATA ATA ATA ATA -ATA ATA AT-A ATA AT
82955759 CTAAAGTTTG
Statistics
Matches: 90, Mismatches: 21, Indels: 12
0.73 0.17 0.10
Matches are distributed among these distances:
2 3 0.03
3 69 0.77
4 18 0.20
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:82955929 original size:3 final size:3
Alignment explanation
Indices: 82955923--82956077 Score: 70
Period size: 3 Copynumber: 52.3 Consensus size: 3
82955913 AGAAGAAAAT
* * * *
82955923 ATA ATA ATA ATA GTA ATA AT- ACA ATA GTA ATA ATA ATA AAA AGGTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A--TA
* * * * * *
82955969 ATA ATA AT- ATA TTA GATA GTA AAA AAA ATA ACA GTA ATA A-A A-A
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * * * *
82956012 ATG ATA ATA GTG ATA TTA GTA ATA ATA ATA ACA AT- ATA TTA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
82956059 ATA AT- ATA TATA TTA ATA A
1 ATA ATA ATA -ATA ATA ATA A
82956078 CGACAATAAT
Statistics
Matches: 110, Mismatches: 33, Indels: 18
0.68 0.20 0.11
Matches are distributed among these distances:
2 11 0.10
3 92 0.84
4 5 0.05
5 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:82955948 original size:17 final size:17
Alignment explanation
Indices: 82955928--82955977 Score: 50
Period size: 17 Copynumber: 2.9 Consensus size: 17
82955918 AAAATATAAT
*
82955928 AATAATAGTAATAATAC
1 AATAATAATAATAATAC
*
82955945 AATAGTAATAATAATA-
1 AATAATAATAATAATAC
82955961 AA-AAGGTAATAATAATA
1 AATAA--TAATAATAATA
82955978 TATTAGATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 1 0.04
16 2 0.07
17 25 0.89
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.28
Consensus pattern (17 bp):
AATAATAATAATAATAC
Found at i:82955948 original size:20 final size:20
Alignment explanation
Indices: 82955920--82955961 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
82955910 AAAAGAAGAA
* *
82955920 AATATAATAATAATAGTAAT
1 AATACAATAATAATAATAAT
*
82955940 AATACAATAGTAATAATAAT
1 AATACAATAATAATAATAAT
82955960 AA
1 AA
82955962 AAAGGTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (20 bp):
AATACAATAATAATAATAAT
Found at i:82955950 original size:14 final size:13
Alignment explanation
Indices: 82955919--82955958 Score: 57
Period size: 14 Copynumber: 3.2 Consensus size: 13
82955909 AAAAAGAAGA
82955919 AAATA-TAATAAT
1 AAATAGTAATAAT
82955931 -AATAGTAATAAT
1 AAATAGTAATAAT
82955943 ACAATAGTAATAAT
1 A-AATAGTAATAAT
82955957 AA
1 AA
82955959 TAAAAAGGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.16
12 7 0.28
13 1 0.04
14 13 0.52
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
AAATAGTAATAAT
Found at i:82956056 original size:17 final size:18
Alignment explanation
Indices: 82956033--82956078 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
82956023 GATATTAGTA
82956033 ATAATAATAACAATATAT
1 ATAATAATAACAATATAT
*
82956051 -TAATAATAATAATATAT
1 ATAATAATAACAATATAT
*
82956068 ATATTAATAAC
1 ATAATAATAAC
82956079 GACAATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAATAATAACAATATAT
Found at i:82956057 original size:23 final size:21
Alignment explanation
Indices: 82956024--82956077 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 21
82956014 GATAATAGTG
*
82956024 ATATTAGTAATAATAATAACAAT
1 ATATTAATAATAATAAT-A-AAT
*
82956047 ATATTAATAATAATAATATAT
1 ATATTAATAATAATAATAAAT
82956068 ATATTAATAA
1 ATATTAATAA
82956078 CGACAATAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.41
22 1 0.03
23 16 0.55
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
ATATTAATAATAATAATAAAT
Found at i:82956085 original size:21 final size:21
Alignment explanation
Indices: 82956045--82956085 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
82956035 AATAATAACA
* *
82956045 ATATATTAATAATAATAATAT
1 ATATATTAATAACAACAATAT
*
82956066 ATATATTAATAACGACAATA
1 ATATATTAATAACAACAATA
82956086 ATAGAAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATATTAATAACAACAATAT
Found at i:82956184 original size:13 final size:13
Alignment explanation
Indices: 82956153--82956208 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
82956143 GGATAAATAG
*
82956153 AATAATAGAAAGT
1 AATAATAGAAAAT
82956166 AATAATA-AAAAT
1 AATAATAGAAAAT
*
82956178 AATTAATTTGAAAAT
1 AA-TAA-TAGAAAAT
82956193 AA-AATAGCAAAAT
1 AATAATAG-AAAAT
82956206 AAT
1 AAT
82956209 GAAAAGGGAC
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
12 8 0.23
13 19 0.54
14 1 0.03
15 7 0.20
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.27
Consensus pattern (13 bp):
AATAATAGAAAAT
Found at i:82960161 original size:121 final size:119
Alignment explanation
Indices: 82959937--82960161 Score: 253
Period size: 121 Copynumber: 1.9 Consensus size: 119
82959927 ATATACACAT
* * * *
82959937 AAATAGATTTAGAAGCAATTATTTGTAAAAATAACATGGAATTAATAATGCGTATAAGATTAAAT
1 AAATAGATTTAAAAGAAATTATATGTAAAAATAACATGGAATT-ATAATGCGTATAAGATAAAAT
* * * *
82960002 TAATTTAATCATAAATTGTATATGTAATAGATTTTATAAACATAATTATGTATAC
65 CAATTTAATCATAAATTATATATATAATAGATTGTATAAACATAATTATGTATAC
*
82960057 AAATAGATTTAAAAGAAATTATATGTATAAAATAACAT-GAATT-TAATGATGTATATAGAATAA
1 AAATAGATTTAAAAGAAATTATATGTA-AAAATAACATGGAATTATAATG-CGTATA-AG-ATAA
*
82960120 AATCAACTTT-ATCATGAATTATATACATATAATA-A-TGTATAA
62 AATCAA-TTTAATCATAAATTATAT--ATATAATAGATTGTATAA
82960162 GAACATTTAT
Statistics
Matches: 88, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
118 5 0.06
119 5 0.06
120 31 0.35
121 36 0.41
122 4 0.05
123 7 0.08
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (119 bp):
AAATAGATTTAAAAGAAATTATATGTAAAAATAACATGGAATTATAATGCGTATAAGATAAAATC
AATTTAATCATAAATTATATATATAATAGATTGTATAAACATAATTATGTATAC
Found at i:82961212 original size:26 final size:26
Alignment explanation
Indices: 82961183--82961290 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
82961173 TGGTACAAAT
82961183 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
82961209 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82961235 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
82961261 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
82961287 TGAT
1 TGAT
82961291 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:82965619 original size:24 final size:24
Alignment explanation
Indices: 82965585--82965660 Score: 75
Period size: 24 Copynumber: 3.2 Consensus size: 24
82965575 AAGATGATAA
82965585 TAATAAAAGTAAAAAATAA-AATAG
1 TAATAAAAGT-AAAAATAATAATAG
*
82965609 TAATAACAGTAAAAATAATAATAG
1 TAATAAAAGTAAAAATAATAATAG
* * * *
82965633 CAACAATAAG-AAAAGTAATAACAG
1 TAATAA-AAGTAAAAATAATAATAG
82965657 TAAT
1 TAAT
82965661 GATAACAATA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
23 8 0.19
24 32 0.76
25 2 0.05
ACGTcount: A:0.64, C:0.05, G:0.09, T:0.21
Consensus pattern (24 bp):
TAATAAAAGTAAAAATAATAATAG
Found at i:82965623 original size:18 final size:18
Alignment explanation
Indices: 82965602--82965659 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
82965592 AGTAAAAAAT
82965602 AAAATAGTAATAACAGTA
1 AAAATAGTAATAACAGTA
* *
82965620 AAAATAATAATAGCAACAATA
1 AAAATAGTAAT---AACAGTA
82965641 AGAAA-AGTAATAACAGTA
1 A-AAATAGTAATAACAGTA
82965659 A
1 A
82965660 TGATAACAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 17 0.53
21 12 0.38
22 3 0.09
ACGTcount: A:0.64, C:0.07, G:0.10, T:0.19
Consensus pattern (18 bp):
AAAATAGTAATAACAGTA
Found at i:82965680 original size:39 final size:37
Alignment explanation
Indices: 82965597--82965680 Score: 87
Period size: 39 Copynumber: 2.2 Consensus size: 37
82965587 ATAAAAGTAA
* * *
82965597 AAAATAAAATAGTAATAACAGTAAAAATAATAATAGC
1 AAAATAAAAAAGTAATAACAGTAAAAATAACAATAAC
** *
82965634 AACAATAAGAAAAGTAATAACAGTAATGATAACAATAAT
1 AA-AATAA-AAAAGTAATAACAGTAAAAATAACAATAAC
82965673 ATAAATAA
1 A-AAATAA
82965681 TAATATATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
37 2 0.05
38 5 0.13
39 30 0.79
40 1 0.03
ACGTcount: A:0.64, C:0.06, G:0.08, T:0.21
Consensus pattern (37 bp):
AAAATAAAAAAGTAATAACAGTAAAAATAACAATAAC
Done.