Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 261 of 295
Found at i:83568760 original size:140 final size:140
Alignment explanation
Indices: 83568443--83568738 Score: 340
Period size: 140 Copynumber: 2.1 Consensus size: 140
83568433 TTTGCTCACT
* ** ** * * *
83568443 CTAACTGTATTGAAGGCTGCGATTCTTCACCTATGAGCCTTAATATGATAGCTGAGAGCTTTGCT
1 CTAACTGTATTGGAGGCTATGGCTCTTCACCTACGAGCCTTAATATGACAGCTGAGAGCTTTGCA
* * ** * * * * * * **
83568508 CTCACTAAATGTGTTGGAGGTTGCGGCTTTTCAGCTGCAAGCCTTAATGTAATAGTTGGGAGCTT
66 CTCACTAAAGGTGTTAGAGGCAGCGACTCTTCACCTACAAGCCTTAATATAACAGTTGAAAGCTT
83568573 GTAACTCTCG
131 GTAACTCTCG
* *
83568583 CTAACTGTATTGGAGGCTATGGCTCTTCACCTGCGAGCCTTAATATGACAGCTGGGAGCTTTGCA
1 CTAACTGTATTGGAGGCTATGGCTCTTCACCTACGAGCCTTAATATGACAGCTGAGAGCTTTGCA
** * * *
83568648 CTTGCTAACGGTGTTAGAGGCAGCGACTCTTCACCTACGAGCCTTAATATGACAGTTGAAAGCTT
66 CTCACTAAAGGTGTTAGAGGCAGCGACTCTTCACCTACAAGCCTTAATATAACAGTTGAAAGCTT
83568713 GTAACTCTCG
131 GTAACTCTCG
*
83568723 CTAACTGTGTTGGAGG
1 CTAACTGTATTGGAGG
83568739 TTGCAGTTTT
Statistics
Matches: 128, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
140 128 1.00
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (140 bp):
CTAACTGTATTGGAGGCTATGGCTCTTCACCTACGAGCCTTAATATGACAGCTGAGAGCTTTGCA
CTCACTAAAGGTGTTAGAGGCAGCGACTCTTCACCTACAAGCCTTAATATAACAGTTGAAAGCTT
GTAACTCTCG
Found at i:83570471 original size:22 final size:23
Alignment explanation
Indices: 83570446--83570500 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
83570436 TATATTATCA
*
83570446 ACATAGTGCA-A-TAAGCTCGCAC
1 ACATAGTGCATACTAAAC-CGCAC
83570468 ACATAGTGCCATACTAAACCGCAC
1 ACATAGTG-CATACTAAACCGCAC
83570492 ACATAGTGC
1 ACATAGTGC
83570501 CTGAAATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 8 0.28
23 3 0.10
24 14 0.48
25 4 0.14
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.18
Consensus pattern (23 bp):
ACATAGTGCATACTAAACCGCAC
Found at i:83570543 original size:47 final size:45
Alignment explanation
Indices: 83570488--83570591 Score: 124
Period size: 45 Copynumber: 2.3 Consensus size: 45
83570478 ATACTAAACC
*
83570488 GCACACATAGTGCC-TGAAATTTCACTCATGCATCGACA-T-TCAAATCT
1 GCACACATAGTGCCATG-AATTT-A-T-ATGCATC-ACATTATAAAATCT
83570535 GCACACATAGTGCCATGAATTTATATGCATCACATTATAAAATCT
1 GCACACATAGTGCCATGAATTTATATGCATCACATTATAAAATCT
*
83570580 GCACACAAAGTG
1 GCACACATAGTG
83570592 ACATTTAATT
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
43 3 0.06
44 8 0.15
45 19 0.37
46 1 0.02
47 19 0.37
48 2 0.04
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (45 bp):
GCACACATAGTGCCATGAATTTATATGCATCACATTATAAAATCT
Found at i:83570731 original size:94 final size:94
Alignment explanation
Indices: 83570570--83570948 Score: 733
Period size: 94 Copynumber: 4.0 Consensus size: 94
83570560 TGCATCACAT
83570570 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
1 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
83570635 ATAAGGCAATTTACTTAATTCAAATAGCA
66 ATAAGGCAATTTACTTAATTCAAATAGCA
83570664 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
1 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
83570729 ATAAGGCAATTTACTTAATTCAAATAGCA
66 ATAAGGCAATTTACTTAATTCAAATAGCA
83570758 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
1 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
83570823 ATAAGGCAATTTACTTAATTCAAATAGCA
66 ATAAGGCAATTTACTTAATTCAAATAGCA
83570852 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCA-ACATAGTGCCAATGTTAACTCATTATA
1 TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
* *
83570916 ATATGGCAACTTACTTAATTCAAATAGCA
66 ATAAGGCAATTTACTTAATTCAAATAGCA
83570945 TATA
1 TATA
83570949 CGGTCACATT
Statistics
Matches: 283, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
93 58 0.20
94 225 0.80
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (94 bp):
TATAAAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATA
ATAAGGCAATTTACTTAATTCAAATAGCA
Found at i:83578339 original size:19 final size:19
Alignment explanation
Indices: 83578315--83578353 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
83578305 CATGTCTCAA
83578315 ATTCGATATTTTAGTTAAT
1 ATTCGATATTTTAGTTAAT
83578334 ATTCGATATTTTAGTTAAT
1 ATTCGATATTTTAGTTAAT
83578353 A
1 A
83578354 GTTCTATCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (19 bp):
ATTCGATATTTTAGTTAAT
Found at i:83578458 original size:23 final size:24
Alignment explanation
Indices: 83578403--83578464 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 24
83578393 TCAACCAAAT
* *
83578403 TCGCACACATAGTGCTAATTAAGC
1 TCGCACACATAGTGCTAACTAAAC
83578427 TCGCACACATAGTGC-ATACTAAAC
1 TCGCACACATAGTGCTA-ACTAAAC
83578451 -CGCACACATAGTGC
1 TCGCACACATAGTGC
83578465 CTAAAATTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 15 0.43
24 20 0.57
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (24 bp):
TCGCACACATAGTGCTAACTAAAC
Found at i:83578516 original size:24 final size:24
Alignment explanation
Indices: 83578489--83578538 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
83578479 CATGCATCGA
83578489 CATTCAAATCAGCACACATAGTGC
1 CATTCAAATCAGCACACATAGTGC
* * *
83578513 CATTTAATTCCGCACACATAGTGC
1 CATTCAAATCAGCACACATAGTGC
83578537 CA
1 CA
83578539 ATGTTAACTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.24
Consensus pattern (24 bp):
CATTCAAATCAGCACACATAGTGC
Found at i:83578611 original size:94 final size:94
Alignment explanation
Indices: 83578494--83578869 Score: 680
Period size: 94 Copynumber: 4.0 Consensus size: 94
83578484 ATCGACATTC
* * *
83578494 AAATCAGCACACATAGTGCCATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
83578559 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
83578588 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
* *
83578653 AGCAATTTACTTAATTCAAATAGCATTTA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
83578682 AAATCTGCACACAAAGTGACATTTAATTCCACACACATAGTGCCAATGTTAACTCATTATAATAA
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
83578747 GGCAATTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
*
83578776 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAT
1 AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
*
83578841 GGCAACTTACTTAATTCAAATAGCATATA
66 GGCAATTTACTTAATTCAAATAGCATATA
83578870 CGGTCACATT
Statistics
Matches: 271, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
94 271 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (94 bp):
AAATCTGCACACAAAGTGACATTTAATTCCGCACACATAGTGCCAATGTTAACTCATTATAATAA
GGCAATTTACTTAATTCAAATAGCATATA
Found at i:83583576 original size:47 final size:47
Alignment explanation
Indices: 83583501--83583631 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
83583491 CACAATCGAT
* * * * *
83583501 AAGTACCTATACCATAGCCCATAACCAAATCAAGGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * *
83583548 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
* * **
83583595 AAATACCTATATCATGGTTCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
83583632 TTATTTGCAC
Statistics
Matches: 71, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.23
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCA
Found at i:83586268 original size:19 final size:19
Alignment explanation
Indices: 83586244--83586283 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
83586234 AAAATTCATT
83586244 TTAATTTTAATTTATACAC
1 TTAATTTTAATTTATACAC
*
83586263 TTAATTTTTATTTATACAC
1 TTAATTTTAATTTATACAC
83586282 TT
1 TT
83586284 GATTAAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (19 bp):
TTAATTTTAATTTATACAC
Found at i:83588083 original size:48 final size:46
Alignment explanation
Indices: 83587924--83588089 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
83587914 TGATATGTGT
* * * * *
83587924 GCTAGTGTAAGACATGTATGGGACATGCACCAGCCA--CAGCATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GGCATTGAG-ACGAGA
* *
83587970 GCCAGTGTAAGACATGTCTGGGTCATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
* * *
83588016 GCTAGTGTAAAACATGTCTGGGACATGCATCGGCCTCGTGATATAC-A-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCAT--TG--AGACGAGA
*
83588064 GCTAGTGTAAGACCTGTCTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
83588090 AGCGTCAGCT
Statistics
Matches: 100, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
45 3 0.03
46 64 0.64
47 2 0.02
48 27 0.27
49 1 0.01
50 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGAGA
Found at i:83588204 original size:49 final size:49
Alignment explanation
Indices: 83588112--83588219 Score: 137
Period size: 49 Copynumber: 2.2 Consensus size: 49
83588102 TGGTGTGTCT
*
83588112 GTGTAAGACCTATCTGGGACATGGCGTCGACATCGATAGATGAAAG-TCA
1 GTGTAAGACCTATCTGGGACATGGCATCGACATCGATAGATGAAAGCT-A
* * * * * *
83588161 GTGTAAGATCTATCTGGGACATGGCATCGGCCTTGCTATATGAAAGCTA
1 GTGTAAGACCTATCTGGGACATGGCATCGACATCGATAGATGAAAGCTA
83588210 GTGTAAGACC
1 GTGTAAGACC
83588220 ATGTCTGGAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
49 49 0.98
50 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (49 bp):
GTGTAAGACCTATCTGGGACATGGCATCGACATCGATAGATGAAAGCTA
Found at i:83589364 original size:13 final size:13
Alignment explanation
Indices: 83589346--83589382 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
83589336 AATTTAGTTC
83589346 ACACGGGCATGAG
1 ACACGGGCATGAG
*
83589359 ACACGGGCATGGG
1 ACACGGGCATGAG
*
83589372 ACACGGACATG
1 ACACGGGCATG
83589383 TCCCTTGATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.30, C:0.24, G:0.38, T:0.08
Consensus pattern (13 bp):
ACACGGGCATGAG
Found at i:83590922 original size:15 final size:15
Alignment explanation
Indices: 83590904--83590935 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
83590894 CATTTCACTA
*
83590904 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
83590919 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
83590934 TT
1 TT
83590936 TACATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:83593516 original size:18 final size:18
Alignment explanation
Indices: 83593493--83593530 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
83593483 AGTGTCCCTC
83593493 CACCTTGATGGTGCCTAA
1 CACCTTGATGGTGCCTAA
*
83593511 CACCTTGGTGGTGCCTAA
1 CACCTTGATGGTGCCTAA
83593529 CA
1 CA
83593531 AGTTTCCTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (18 bp):
CACCTTGATGGTGCCTAA
Found at i:83601063 original size:12 final size:12
Alignment explanation
Indices: 83601048--83601086 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
83601038 AACCTAAACT
83601048 AAAAATGAAAAG
1 AAAAATGAAAAG
*
83601060 AAAAAAGAAAAG
1 AAAAATGAAAAG
*
83601072 AAAAAT-AAAAT
1 AAAAATGAAAAG
83601083 AAAA
1 AAAA
83601087 CCTAACCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08
Consensus pattern (12 bp):
AAAAATGAAAAG
Found at i:83602866 original size:35 final size:35
Alignment explanation
Indices: 83602697--83602867 Score: 175
Period size: 35 Copynumber: 4.9 Consensus size: 35
83602687 CTCTGTTTGT
* * *
83602697 CGTGTTTCAGTTGGATTAGCTCTTATGAGTATTGA
1 CGTGTTACAGTTGGATTAGCTCTTATGAGCATTGG
* * * * *
83602732 TGTGTTTCGGTTGGATTAGCTCTTAAGAGAATTGG
1 CGTGTTACAGTTGGATTAGCTCTTATGAGCATTGG
* * *
83602767 CGTATTACGGTTGGATTAGTTCTTATGAGCATTGG
1 CGTGTTACAGTTGGATTAGCTCTTATGAGCATTGG
* *
83602802 CGTGTTATGCA--TGGATTGGCTCTAATGAGCATTGG
1 CGTGTTA--CAGTTGGATTAGCTCTTATGAGCATTGG
* *
83602837 CGTGTTACAGTAGGACTAGCTCTTATGAGCA
1 CGTGTTACAGTTGGATTAGCTCTTATGAGCA
83602868 CCGGTGTGTT
Statistics
Matches: 112, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
33 2 0.02
35 109 0.97
37 1 0.01
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.37
Consensus pattern (35 bp):
CGTGTTACAGTTGGATTAGCTCTTATGAGCATTGG
Found at i:83604684 original size:37 final size:37
Alignment explanation
Indices: 83604626--83604696 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
83604616 TACCTCGAAT
* *
83604626 AATCCCCACACGTAGTTATCGGGTCTCACCCGGACAA
1 AATCCCCACACATAGTCATCGGGTCTCACCCGGACAA
* *
83604663 AATCTCCACACATAGTCATCGGGTCTTACCCGGA
1 AATCCCCACACATAGTCATCGGGTCTCACCCGGA
83604697 ATATATTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (37 bp):
AATCCCCACACATAGTCATCGGGTCTCACCCGGACAA
Found at i:83604895 original size:48 final size:48
Alignment explanation
Indices: 83604837--83605222 Score: 574
Period size: 48 Copynumber: 8.0 Consensus size: 48
83604827 ATATACACAC
* * * *
83604837 ATCTCCTACATATTGCTCATTAGCCATTCGGATTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
83604885 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83604933 ATCTCATACATATTTCATATTAGCCATTCGGCTATACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83604981 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
83605029 ATCTCATACATATTTCATATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
83605077 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTGCATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
83605125 TTCTCATACATATTTCATATTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
83605173 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
83605221 AT
1 AT
83605223 TTATCTTGTA
Statistics
Matches: 301, Mismatches: 37, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 301 1.00
ACGTcount: A:0.31, C:0.25, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:83609787 original size:8 final size:9
Alignment explanation
Indices: 83609756--83609787 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
83609746 ACCCCTAATT
83609756 GACTGAAAG
1 GACTGAAAG
83609765 GACTGAAAG
1 GACTGAAAG
83609774 GACTGAAA-
1 GACTGAAAG
83609782 GACTGA
1 GACTGA
83609788 TATATGCCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 6 0.26
9 17 0.74
ACGTcount: A:0.44, C:0.12, G:0.31, T:0.12
Consensus pattern (9 bp):
GACTGAAAG
Found at i:83611398 original size:42 final size:43
Alignment explanation
Indices: 83611340--83611443 Score: 140
Period size: 42 Copynumber: 2.4 Consensus size: 43
83611330 TCAACACCAT
* * * *
83611340 TGTCCCAAACAAGGTCTTACACGAAAT-TGATTAACAATGCC-A
1 TGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACAATGCCAA
*
83611382 TGTCCCAGACATGGTCTTACACGTAATCTCAATACAATGCCAA
1 TGTCCCAGACATGGTCTTACACGAAATCTCAATACAATGCCAA
83611425 TGTCCCAGACATGGTCTTA
1 TGTCCCAGACATGGTCTTA
83611444 TATGTAATCA
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
42 32 0.58
43 23 0.42
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.26
Consensus pattern (43 bp):
TGTCCCAGACATGGTCTTACACGAAATCTCAATACAATGCCAA
Found at i:83611441 original size:85 final size:85
Alignment explanation
Indices: 83611287--83611443 Score: 190
Period size: 85 Copynumber: 1.8 Consensus size: 85
83611277 CATATGCTCG
* * * * * *
83611287 AACAATGCCATATCTCATATATGGTCTTACATGTTATCACATATCAACACCATTGTCCCAAACAA
1 AACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAACACCAATGTCCCAAACAA
83611352 GGTCTTACACGAAATTGATT
66 GGTCTTACACGAAATTGATT
* * ** *
83611372 AACAATGCCATGTCCCAGACATGGTCTTACACGTAATCTCA-ATACAATGCCAATGTCCCAGACA
1 AACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATAT-CAACACCAATGTCCCAAACA
*
83611436 TGGTCTTA
65 AGGTCTTA
83611444 TATGTAATCA
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
84 2 0.03
85 57 0.97
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (85 bp):
AACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAACACCAATGTCCCAAACAA
GGTCTTACACGAAATTGATT
Found at i:83611442 original size:43 final size:43
Alignment explanation
Indices: 83611287--83611452 Score: 140
Period size: 43 Copynumber: 3.9 Consensus size: 43
83611277 CATATGCTCG
* * * * * * *
83611287 AACAATGCCATATCTCATATATGGTCTTACATGTTATCAC-AT
1 AACAATGCCATGTCCCAGACATGGTCTTACACGTAATCTCAAT
* ** * * * * *
83611329 ATCAACACCATTGTCCCAAACAAGGTCTTACACGAAAT-TGATT
1 AACAATGCCA-TGTCCCAGACATGGTCTTACACGTAATCTCAAT
83611372 AACAATGCCATGTCCCAGACATGGTCTTACACGTAATCTCAAT
1 AACAATGCCATGTCCCAGACATGGTCTTACACGTAATCTCAAT
* *
83611415 -ACAATGCCAATGTCCCAGACATGGTCTTATATGTAATC
1 AACAATGCC-ATGTCCCAGACATGGTCTTACACGTAATC
83611453 ACATCTCAGT
Statistics
Matches: 96, Mismatches: 24, Indels: 7
0.76 0.19 0.06
Matches are distributed among these distances:
42 39 0.41
43 57 0.59
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.29
Consensus pattern (43 bp):
AACAATGCCATGTCCCAGACATGGTCTTACACGTAATCTCAAT
Found at i:83620022 original size:27 final size:27
Alignment explanation
Indices: 83619982--83620033 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
83619972 GTATGGATGA
83619982 TAAATAGAAAGGTATCAATACAGGTGG
1 TAAATAGAAAGGTATCAATACAGGTGG
* *
83620009 TAAATAGAATGGTATCAGTACAGGT
1 TAAATAGAAAGGTATCAATACAGGT
83620034 ATGTACAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (27 bp):
TAAATAGAAAGGTATCAATACAGGTGG
Found at i:83626095 original size:40 final size:40
Alignment explanation
Indices: 83626040--83626144 Score: 133
Period size: 40 Copynumber: 2.6 Consensus size: 40
83626030 TGATGACATA
*
83626040 TCGGCTAAATATGGCACTTAGTGTGCGATTCG-GTATAGCT
1 TCGGCTAAATATGGCACTTAGTGTGCAATTCGAG-ATAGCT
*
83626080 TCGGCTAAACT-TGGCACTTAGTGTGCAATTTGAGATAGCT
1 TCGGCTAAA-TATGGCACTTAGTGTGCAATTCGAGATAGCT
** *
83626120 TCGGCTATGTATAGCACTTAGTGTG
1 TCGGCTAAATATGGCACTTAGTGTG
83626145 AGAGATATTG
Statistics
Matches: 57, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
39 1 0.02
40 54 0.95
41 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (40 bp):
TCGGCTAAATATGGCACTTAGTGTGCAATTCGAGATAGCT
Found at i:83630687 original size:19 final size:19
Alignment explanation
Indices: 83630663--83630701 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
83630653 ATTTCCAACA
83630663 TCACGTTCAAGACCCACTT
1 TCACGTTCAAGACCCACTT
83630682 TCACGTTCAAGACCCACTT
1 TCACGTTCAAGACCCACTT
83630701 T
1 T
83630702 GCACAACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.26, C:0.36, G:0.10, T:0.28
Consensus pattern (19 bp):
TCACGTTCAAGACCCACTT
Found at i:83632162 original size:25 final size:26
Alignment explanation
Indices: 83632121--83632175 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 26
83632111 ATTTTTAGAA
*
83632121 AAATATATTTTTCAAGAATAACCAAT
1 AAATATATTTTTCAAGAATAACAAAT
83632147 AAATAT-TTTTTCAAGAATAACAAAT
1 AAATATATTTTTCAAGAATAACAAAT
83632172 AAAT
1 AAAT
83632176 CAAAAGGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 22 0.79
26 6 0.21
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (26 bp):
AAATATATTTTTCAAGAATAACAAAT
Found at i:83636105 original size:32 final size:32
Alignment explanation
Indices: 83636037--83636107 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
83636027 ACACATGCCC
* * * * *
83636037 GTGTTGCCCGCATGGCCCCATTGGCACAGACC
1 GTGTGGCCCACATGGCCCAATTGGCACAAACA
*
83636069 GTGTGGCCCACATGGCCCAATTGGCCCAAACA
1 GTGTGGCCCACATGGCCCAATTGGCACAAACA
83636101 GTGTGGC
1 GTGTGGC
83636108 TTACACGGTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.18
Consensus pattern (32 bp):
GTGTGGCCCACATGGCCCAATTGGCACAAACA
Found at i:83636137 original size:24 final size:24
Alignment explanation
Indices: 83636110--83636167 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
83636100 AGTGTGGCTT
*
83636110 ACACGGTCTAGCAAATGACCTGTC
1 ACACGGCCTAGCAAATGACCTGTC
83636134 ACACGGCCTAGCAAATGACCTGTC
1 ACACGGCCTAGCAAATGACCTGTC
83636158 ACACGGCCTA
1 ACACGGCCTA
83636168 CTACACTGTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.29, C:0.33, G:0.21, T:0.17
Consensus pattern (24 bp):
ACACGGCCTAGCAAATGACCTGTC
Found at i:83644084 original size:23 final size:23
Alignment explanation
Indices: 83644058--83644104 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
83644048 AATATAAAAA
**
83644058 TAAAAATAAATTAATTTAAATTT
1 TAAAAATAAATTAAACTAAATTT
* *
83644081 TAAAATTAAGTTAAACTAAATTT
1 TAAAAATAAATTAAACTAAATTT
83644104 T
1 T
83644105 TAAACCGGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (23 bp):
TAAAAATAAATTAAACTAAATTT
Found at i:83644633 original size:21 final size:22
Alignment explanation
Indices: 83644593--83644634 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
83644583 AACGTTTCAC
83644593 AAGTATCAAATCGAAAAAAATT
1 AAGTATCAAATCGAAAAAAATT
**
83644615 AAGTATCAAATTTAAAAAAA
1 AAGTATCAAATCGAAAAAAA
83644635 AAGTCAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.07, T:0.24
Consensus pattern (22 bp):
AAGTATCAAATCGAAAAAAATT
Found at i:83650205 original size:20 final size:19
Alignment explanation
Indices: 83650180--83650228 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
83650170 GAATGAAGAA
**
83650180 AATTTACATTTTGTTTTATT
1 AATTTACATTTTG-TTTAAC
83650200 AATTTA-ACTTTTGTTTAAC
1 AATTTACA-TTTTGTTTAAC
83650219 AATTTACATT
1 AATTTACATT
83650229 ATTAACCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.31, C:0.08, G:0.04, T:0.57
Consensus pattern (19 bp):
AATTTACATTTTGTTTAAC
Found at i:83652609 original size:131 final size:129
Alignment explanation
Indices: 83652381--83652744 Score: 343
Period size: 131 Copynumber: 2.8 Consensus size: 129
83652371 AGGGATCTTC
* * * * * * **
83652381 GATTGTTTTGAGCAGATGAAAAAGCGCAACCCAGCACGATAGGGC-TCGATTTTCAAACCGCCAA
1 GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCAT-GATTCTCGAATTGCCAA
* *
83652445 ACATCGGACATCGCCTTCGTTTTGAAAGGTTTTTAATAAACATGAATGAAAACCTAAAGGAATAT
65 ACATCGAACATCGCCTTCGTTTT-AAAGATTTTTAA-AAACATGAATGAAAACCTAAAGGAATAT
83652510 TA
128 TA
* *
83652512 GATTGTTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCTCGAATTGTCAAA
1 GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAA
** * * ** ** *** * *
83652577 CGCCGAATATTGCCTTCGTTTTAAATGATTTTTAGAAAGTATGCGTGAAATTTTGAAGGGATATT
66 CATCGAACATCGCCTTCGTTTTAAA-GATTTTTA-AAAACATGAATGAAAACCTAAAGGAATATT
*
83652642 T
129 A
* * * * * * *
83652643 GATTATTTTAAGCAAACGAGAAATTGTAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAA
1 GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATT-CTCGAATTGCCAA
* *
83652708 ATATCGCACATCGCCTTCGTTTTAAAGAATTTTTAAA
65 ACATCGAACATCGCCTTCGTTTTAAAG-ATTTTTAAA
83652745 TGATTGATTA
Statistics
Matches: 187, Mismatches: 41, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
130 3 0.02
131 144 0.77
132 40 0.21
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (129 bp):
GATTGTTTTGAGCAAACGAGAAATCGCAACCCAGCACGATAGGGCATGATTCTCGAATTGCCAAA
CATCGAACATCGCCTTCGTTTTAAAGATTTTTAAAAACATGAATGAAAACCTAAAGGAATATTA
Found at i:83654727 original size:39 final size:39
Alignment explanation
Indices: 83654684--83654761 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
83654674 AAATCGAAAG
83654684 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
1 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
83654723 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
1 AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
83654762 TCAAGCTTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (39 bp):
AAAAATGAGAATCAAATCACCTTGTGAAGACTTTTTTGT
Found at i:83657467 original size:22 final size:22
Alignment explanation
Indices: 83657439--83657485 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 22
83657429 TTAATTATTC
83657439 ATAGTCCCTCCTCAA-CTCATAA
1 ATAGTCCCTCCTCAACCT-ATAA
*
83657461 ATAGTCCCTCCTTAACCTATAA
1 ATAGTCCCTCCTCAACCTATAA
83657483 ATA
1 ATA
83657486 ATTTCTACCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.34, C:0.32, G:0.04, T:0.30
Consensus pattern (22 bp):
ATAGTCCCTCCTCAACCTATAA
Found at i:83657817 original size:5 final size:5
Alignment explanation
Indices: 83657807--83657832 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
83657797 AAAGCACCAA
83657807 ATATT ATATT ATATT ATATT ATATT A
1 ATATT ATATT ATATT ATATT ATATT A
83657833 AGCGTAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:83661921 original size:6 final size:7
Alignment explanation
Indices: 83661900--83661924 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
83661890 AAAAATATAA
83661900 TTAATTT
1 TTAATTT
83661907 TTAATTT
1 TTAATTT
83661914 TTAATTT
1 TTAATTT
83661921 TTAA
1 TTAA
83661925 AAATAGATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
TTAATTT
Found at i:83662226 original size:10 final size:10
Alignment explanation
Indices: 83662191--83662229 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
83662181 TAAAGTTTTA
*
83662191 ATATTTATTT
1 ATATTTAATT
*
83662201 ATAATTAATT
1 ATATTTAATT
83662211 ATTATTTAATT
1 A-TATTTAATT
83662222 ATATTTAA
1 ATATTTAA
83662230 ATAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATATTTAATT
Found at i:83662422 original size:3 final size:3
Alignment explanation
Indices: 83662414--83662447 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
83662404 GGATACTCCC
83662414 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
83662448 AAGCACTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:83664810 original size:25 final size:24
Alignment explanation
Indices: 83664780--83664829 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
83664770 AAATAAAAAA
* *
83664780 ATTTTAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
83664806 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
83664830 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:83664841 original size:22 final size:21
Alignment explanation
Indices: 83664770--83664858 Score: 65
Period size: 21 Copynumber: 4.1 Consensus size: 21
83664760 TTATTTTATT
* *
83664770 AAAT-AAAAAAATTTTAAAAT
1 AAATAAAAAAAATATTAAAAC
*
83664790 ATAATAAATCAAATATATTTAAAA-
1 A-AATAAA--AAAAATA-TTAAAAC
*
83664814 ACATAAAAACAAATATTAAAAC
1 AAATAAAAA-AAATATTAAAAC
* *
83664836 AAATAAAAATAATACTAAAAC
1 AAATAAAAAAAATATTAAAAC
83664857 AA
1 AA
83664859 TTCTTAAAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
20 1 0.02
21 23 0.42
22 14 0.25
23 5 0.09
24 6 0.11
25 6 0.11
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.25
Consensus pattern (21 bp):
AAATAAAAAAAATATTAAAAC
Found at i:83666718 original size:19 final size:19
Alignment explanation
Indices: 83666671--83666719 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
83666661 TTATTTCCAT
*
83666671 TTTCTTTTCATTTTTTCTTA
1 TTTCCTTTC-TTTTTTCTTA
83666691 TTTCC-TTCTTTTTTCTGTA
1 TTTCCTTTCTTTTTTCT-TA
83666710 -TTCCTTTCTT
1 TTTCCTTTCTT
83666720 CTTCCTCTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 12 0.46
19 10 0.38
20 4 0.15
ACGTcount: A:0.06, C:0.20, G:0.02, T:0.71
Consensus pattern (19 bp):
TTTCCTTTCTTTTTTCTTA
Found at i:83668775 original size:18 final size:18
Alignment explanation
Indices: 83668752--83668795 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 18
83668742 ATTTTGTAAA
83668752 TGTTTCATGCTTAATTTT
1 TGTTTCATGCTTAATTTT
83668770 TG-TT--T-CTTAATTTT
1 TGTTTCATGCTTAATTTT
*
83668784 TATTTCATGCTT
1 TGTTTCATGCTT
83668796 TAAGTGGCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 8
0.70 0.03 0.27
Matches are distributed among these distances:
14 10 0.48
15 3 0.14
17 3 0.14
18 5 0.24
ACGTcount: A:0.16, C:0.11, G:0.09, T:0.64
Consensus pattern (18 bp):
TGTTTCATGCTTAATTTT
Found at i:83670622 original size:5 final size:5
Alignment explanation
Indices: 83670614--83670639 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
83670604 ATTAAAAAAT
83670614 ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA A
83670640 GGAGGTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:83671181 original size:51 final size:51
Alignment explanation
Indices: 83671117--83671252 Score: 146
Period size: 51 Copynumber: 2.7 Consensus size: 51
83671107 TGGAAACATG
*
83671117 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
83671168 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * *
83671219 ATATTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
83671253 TTGATGGTAG
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:83673102 original size:96 final size:96
Alignment explanation
Indices: 83672971--83673225 Score: 440
Period size: 96 Copynumber: 2.7 Consensus size: 96
83672961 GAACAGATAC
*
83672971 GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGAAAAGCCGAAGCCAAGAGGGTAAAGAGGAGCAAGT
1 GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGTAAAGAGGAGCAAGT
83673036 CTGTCATCGAAGAGAACGATGGAGCAGACAA
66 CTGTCATCGAAGAGAACGATGGAGCAGACAA
*
83673067 GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGCAAAGAGGAGCAAGT
1 GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGTAAAGAGGAGCAAGT
* * *
83673132 CTGTTATCGTAGGGAACGATGGAGCAGACAA
66 CTGTCATCGAAGAGAACGATGGAGCAGACAA
*
83673163 GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAACCAAGAGGGCT-AAGAGGAGCAA
1 GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGG-TAAAGAGGAGCAA
83673226 AAAGAAGAGA
Statistics
Matches: 151, Mismatches: 7, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
96 151 1.00
ACGTcount: A:0.36, C:0.18, G:0.35, T:0.11
Consensus pattern (96 bp):
GGAGCCCAAGAAGCTTGGTTCGAGCAAGGGTAAAGCCGAAGCCAAGAGGGTAAAGAGGAGCAAGT
CTGTCATCGAAGAGAACGATGGAGCAGACAA
Found at i:83674196 original size:51 final size:51
Alignment explanation
Indices: 83674132--83674267 Score: 146
Period size: 51 Copynumber: 2.7 Consensus size: 51
83674122 TGGAAACATG
*
83674132 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
83674183 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * *
83674234 ATATTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
83674268 TTGATGGTAG
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.40, C:0.06, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:83675766 original size:40 final size:40
Alignment explanation
Indices: 83675708--83675784 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
83675698 ACATACCATG
*
83675708 TGGGGATAGAATCGACCCA-CCTAACCCTACACACCAAGTA
1 TGGGGATAGAATCAACCCATCC-AACCCTACACACCAAGTA
* * **
83675748 TGGGGATATAGTCAACCCATCCAGGCCTACACACCAA
1 TGGGGATAGAATCAACCCATCCAACCCTACACACCAA
83675785 AAGGTACCGT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 29 0.94
41 2 0.06
ACGTcount: A:0.34, C:0.32, G:0.18, T:0.16
Consensus pattern (40 bp):
TGGGGATAGAATCAACCCATCCAACCCTACACACCAAGTA
Found at i:83676618 original size:29 final size:29
Alignment explanation
Indices: 83676586--83676644 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
83676576 AAACTAACAA
* *
83676586 CAGTCTACCTTTAACGAAAAACGGCAGTT
1 CAGTCTACCTTTAAAGAAAAACGACAGTT
*
83676615 CAGTCTACCTTTAAAGAACAACGACAGTT
1 CAGTCTACCTTTAAAGAAAAACGACAGTT
83676644 C
1 C
83676645 CTTACTGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (29 bp):
CAGTCTACCTTTAAAGAAAAACGACAGTT
Found at i:83678173 original size:19 final size:18
Alignment explanation
Indices: 83678142--83678177 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
83678132 TATATATATG
83678142 CATGTATTAAAAAATAAC
1 CATGTATTAAAAAATAAC
*
83678160 CATGATATTTAAAAATAA
1 CATG-TATTAAAAAATAA
83678178 TTATTAACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.31
Consensus pattern (18 bp):
CATGTATTAAAAAATAAC
Found at i:83678398 original size:18 final size:18
Alignment explanation
Indices: 83678354--83678398 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
83678344 AAAGTACTAC
83678354 TAAATATAACAATAATGA
1 TAAATATAACAATAATGA
**
83678372 T-AATAATAAGTATAATGA
1 TAAAT-ATAACAATAATGA
83678390 TAAATATAA
1 TAAATATAA
83678399 TGATATACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 3 0.13
18 17 0.74
19 3 0.13
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (18 bp):
TAAATATAACAATAATGA
Found at i:83678439 original size:17 final size:17
Alignment explanation
Indices: 83678391--83678444 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 17
83678381 GTATAATGAT
*
83678391 AAATATAATGATATACAAA
1 AAATAT-AT-ATATACACA
83678410 AAATAATACTATATACACA
1 AAAT-ATA-TATATACACA
83678429 AAATATATATATACAC
1 AAATATATATATACAC
83678445 GTATAGTAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 9 0.28
18 3 0.09
19 17 0.53
20 3 0.09
ACGTcount: A:0.59, C:0.11, G:0.02, T:0.28
Consensus pattern (17 bp):
AAATATATATATACACA
Found at i:83678514 original size:21 final size:21
Alignment explanation
Indices: 83678465--83678514 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
83678455 ATATATGTAT
* *
83678465 TAATATTAACAATAAATATAA
1 TAATAATAAAAATAAATATAA
**
83678486 TAGGAATAAAAATAAATATAA
1 TAATAATAAAAATAAATATAA
83678507 TAATAATA
1 TAATAATA
83678515 TATACACAAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.64, C:0.02, G:0.04, T:0.30
Consensus pattern (21 bp):
TAATAATAAAAATAAATATAA
Found at i:83678611 original size:33 final size:34
Alignment explanation
Indices: 83678573--83678665 Score: 93
Period size: 33 Copynumber: 2.7 Consensus size: 34
83678563 GAATATGTTC
*
83678573 ATAAGATAATATA-AAATATATACATGAAATAAT
1 ATAAGATAATATACAAATATATACATGAAAAAAT
* *
83678606 ATAAGA-AATATACAACTA-ATAACATTAAAAAAT
1 ATAAGATAATATACAAATATAT-ACATGAAAAAAT
* *
83678639 ATATACATAATATATATAATATATACA
1 ATA-AGATAATATACA-AATATATACA
83678666 ATATATACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
32 8 0.17
33 23 0.48
34 2 0.04
35 7 0.15
36 6 0.12
37 2 0.04
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.30
Consensus pattern (34 bp):
ATAAGATAATATACAAATATATACATGAAAAAAT
Found at i:83678626 original size:23 final size:22
Alignment explanation
Indices: 83678578--83678666 Score: 56
Period size: 23 Copynumber: 3.9 Consensus size: 22
83678568 TGTTCATAAG
**
83678578 ATAATATAAAATATATACATGAA
1 ATAATATAAAA-ATATACAACAA
*
83678601 ATAATATAAGAAATATACAACTA
1 ATAATATAA-AAATATACAACAA
* *
83678624 ATAACATTAAAAAATATA-TACATA
1 ATAATA-T-AAAAATATACAACA-A
*
83678648 AT-ATATATAATATATACAA
1 ATAATATA-AAAATATACAA
83678667 TATATACATT
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
21 1 0.02
22 8 0.16
23 27 0.53
24 13 0.25
25 2 0.04
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (22 bp):
ATAATATAAAAATATACAACAA
Found at i:83678673 original size:9 final size:9
Alignment explanation
Indices: 83678636--83678674 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
83678626 AACATTAAAA
83678636 AATATATAC
1 AATATATAC
*
83678645 ATAATATATAT
1 --AATATATAC
83678656 AATATATAC
1 AATATATAC
83678665 AATATATAC
1 AATATATAC
83678674 A
1 A
83678675 TTTGATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 18 0.69
11 8 0.31
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (9 bp):
AATATATAC
Found at i:83678757 original size:12 final size:12
Alignment explanation
Indices: 83678742--83678776 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
83678732 ATACTAATGC
83678742 TAAT-AATATTAA
1 TAATAAATA-TAA
83678754 TAATAAATATAA
1 TAATAAATATAA
83678766 TAATAAATATA
1 TAATAAATATA
83678777 TATGCATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 18 0.82
13 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
TAATAAATATAA
Found at i:83678839 original size:13 final size:13
Alignment explanation
Indices: 83678817--83678868 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
83678807 TATATAGCTA
*
83678817 AATATAATATAAT
1 AATATTATATAAT
*
83678830 AATATTATATAAA
1 AATATTATATAAT
*
83678843 AATAATACTGATAAT
1 AATATTA-T-ATAAT
*
83678858 AATACTATATA
1 AATATTATATA
83678869 TAACATGATT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
13 20 0.62
14 2 0.06
15 10 0.31
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (13 bp):
AATATTATATAAT
Found at i:83678871 original size:15 final size:14
Alignment explanation
Indices: 83678742--83678871 Score: 62
Period size: 15 Copynumber: 9.2 Consensus size: 14
83678732 ATACTAATGC
83678742 TAATAATAT-TA-A
1 TAATAATATATATA
83678754 TAATAA-ATATA-A
1 TAATAATATATATA
83678766 TAATAA-ATATATA
1 TAATAATATATATA
*
83678779 TGCATATAATAGTA-AGA
1 T--A-ATAATA-TATATA
* *
83678796 AACAAAATATATATA
1 TA-ATAATATATATA
*
83678811 TAGCTAA-ATATAATA
1 TA-ATAATATAT-ATA
83678826 TAATAATAT-TATA
1 TAATAATATATATA
*
83678839 TAAAAATA-ATACTGA
1 TAATAATATATA-T-A
83678854 TAATAATACTATATA
1 TAATAATA-TATATA
83678869 TAA
1 TAA
83678872 CATGATTAAT
Statistics
Matches: 91, Mismatches: 12, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
11 2 0.02
12 20 0.22
13 14 0.15
14 11 0.12
15 31 0.34
16 5 0.05
17 6 0.07
18 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (14 bp):
TAATAATATATATA
Found at i:83679510 original size:12 final size:12
Alignment explanation
Indices: 83679493--83679522 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
83679483 TTTCTTGTTT
83679493 TTTTTAATTATA
1 TTTTTAATTATA
83679505 TTTTTAATTATA
1 TTTTTAATTATA
83679517 TTTTTA
1 TTTTTA
83679523 TATGTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TTTTTAATTATA
Found at i:83679525 original size:20 final size:22
Alignment explanation
Indices: 83679500--83679539 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
83679490 TTTTTTTTAA
83679500 TTATAT-TTTTAAT-TATATTT
1 TTATATGTTTTAATATATATTT
83679520 TTATATGTTTTAATATATAT
1 TTATATGTTTTAATATATAT
83679540 ATAGGTGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 7 0.39
22 5 0.28
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (22 bp):
TTATATGTTTTAATATATATTT
Found at i:83683476 original size:16 final size:16
Alignment explanation
Indices: 83683455--83683525 Score: 88
Period size: 16 Copynumber: 4.4 Consensus size: 16
83683445 TGAATTACTT
*
83683455 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
*
83683471 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
*
83683487 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCC
* * *
83683503 ATTACAACCCTATTCT
1 ATTACAGCTCTATTCC
83683519 ATTACAG
1 ATTACAG
83683526 TGAACCAAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:83683499 original size:32 final size:32
Alignment explanation
Indices: 83683455--83683525 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
83683445 TGAATTACTT
* * *
83683455 ATTACAGTTCTATTCCATTACAACTCTATTCC
1 ATTACAGCTCTATTCAATTACAACCCTATTCC
*
83683487 ATTACAGCTCTATTCAATTACAACCCTATTCT
1 ATTACAGCTCTATTCAATTACAACCCTATTCC
83683519 ATTACAG
1 ATTACAG
83683526 TGAACCAAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.04, T:0.38
Consensus pattern (32 bp):
ATTACAGCTCTATTCAATTACAACCCTATTCC
Found at i:83684832 original size:16 final size:16
Alignment explanation
Indices: 83684811--83684866 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
83684801 TATTTGGTTC
83684811 ACTGTAATGGAATAGG
1 ACTGTAATGGAATAGG
* *
83684827 ACTGTAATTGAATAGA
1 ACTGTAATGGAATAGG
83684843 ACTGTAATGGAATA-G
1 ACTGTAATGGAATAGG
83684858 AGCTGTAAT
1 A-CTGTAAT
83684867 AAGTAATTCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 1 0.03
16 34 0.97
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.29
Consensus pattern (16 bp):
ACTGTAATGGAATAGG
Found at i:83689945 original size:13 final size:13
Alignment explanation
Indices: 83689927--83689952 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
83689917 AGACAAACGC
83689927 TCATACTTAAATT
1 TCATACTTAAATT
83689940 TCATACTTAAATT
1 TCATACTTAAATT
83689953 ACCCAACTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (13 bp):
TCATACTTAAATT
Found at i:83696881 original size:40 final size:40
Alignment explanation
Indices: 83696837--83696941 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
83696827 AATTAGGTGA
*
83696837 AAAAGAGGGAGAATGGTGGAACGAAATGGGAATCAGACTG
1 AAAAGAGGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
*
83696877 AAAAGAGGGAGAAGGGTGGAATGAAATGGGAATCAGACTG
1 AAAAGAGGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
*
83696917 AAAAGA-GGAGAAGGGTAGAACGAAA
1 AAAAGAGGGAGAAGGGTGGAACGAAA
83696942 GAAGGAGAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
39 17 0.28
40 44 0.72
ACGTcount: A:0.46, C:0.06, G:0.38, T:0.10
Consensus pattern (40 bp):
AAAAGAGGGAGAAGGGTGGAACGAAATGGGAATCAGACTG
Found at i:83701260 original size:13 final size:13
Alignment explanation
Indices: 83701244--83701273 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
83701234 GCTTTTGAGG
*
83701244 AGTGCTTTAAAAA
1 AGTGCTATAAAAA
83701257 AGTGCTATAAAAA
1 AGTGCTATAAAAA
83701270 AGTG
1 AGTG
83701274 ATTTGAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (13 bp):
AGTGCTATAAAAA
Found at i:83701557 original size:20 final size:21
Alignment explanation
Indices: 83701532--83701582 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
83701522 ATCAATTATT
*
83701532 TATAAAATT-TAATTTGAATA
1 TATAAAATTATAATTTAAATA
*
83701552 TAT-AAATTATATTTTAAATA
1 TATAAAATTATAATTTAAATA
83701572 T-TAAAA-TATAA
1 TATAAAATTATAA
83701583 CCAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TATAAAATTATAATTTAAATA
Found at i:83721018 original size:21 final size:21
Alignment explanation
Indices: 83720989--83721039 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
83720979 TTATGCCACA
83720989 TCAGTATTTTTATCCTGAATT
1 TCAGTATTTTTATCCTGAATT
* *
83721010 TCAGGA-TTTTATTCTGAATT
1 TCAGTATTTTTATCCTGAATT
*
83721030 TTAGTATTTT
1 TCAGTATTTT
83721040 AATTTGGATT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.24, C:0.10, G:0.12, T:0.55
Consensus pattern (21 bp):
TCAGTATTTTTATCCTGAATT
Found at i:83721675 original size:3 final size:3
Alignment explanation
Indices: 83721667--83721695 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
83721657 CTTCATTCTT
83721667 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
83721696 TTGGTTTCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:83722491 original size:33 final size:33
Alignment explanation
Indices: 83722454--83722521 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
83722444 CTTTAGCCGC
83722454 CGCATACCCCTCAGCCTTGGC-CACCACGCCCCA
1 CGCATACCCCTCAGCCTT-GCTCACCACGCCCCA
* *
83722487 CGCATGCCCCTCAGCCTTGCTCACCACGCTCCA
1 CGCATACCCCTCAGCCTTGCTCACCACGCCCCA
83722520 CG
1 CG
83722522 TGTCTGACAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
32 2 0.06
33 30 0.94
ACGTcount: A:0.16, C:0.53, G:0.16, T:0.15
Consensus pattern (33 bp):
CGCATACCCCTCAGCCTTGCTCACCACGCCCCA
Found at i:83723601 original size:12 final size:12
Alignment explanation
Indices: 83723584--83723609 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83723574 TTTTTTGTTG
83723584 TTTATATTTTTA
1 TTTATATTTTTA
83723596 TTTATATTTTTA
1 TTTATATTTTTA
83723608 TT
1 TT
83723610 AGTATCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATATTTTTA
Found at i:83723624 original size:3 final size:3
Alignment explanation
Indices: 83723600--83723663 Score: 65
Period size: 3 Copynumber: 20.3 Consensus size: 3
83723590 TTTTTATTTA
* * * *
83723600 TAT TTT TAT TAG TAT CAT TAT TAT TAT TAT TAT TAT CTCCAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -T--AT TAT TAT
83723648 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
83723664 CTCTTGTTAT
Statistics
Matches: 50, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
3 46 0.92
4 1 0.02
5 1 0.02
6 2 0.04
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:83725133 original size:13 final size:15
Alignment explanation
Indices: 83725099--83725149 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
83725089 TGAAAATGAT
83725099 ATAATAAGTATAATAA
1 ATAAT-AGTATAATAA
*
83725115 ATAATAGTGTAA-AA
1 ATAATAGTATAATAA
83725129 A-AATAGTATAATAA
1 ATAATAGTATAATAA
83725143 ATAATAG
1 ATAATAG
83725150 GAAAATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
13 9 0.29
14 6 0.19
15 11 0.35
16 5 0.16
ACGTcount: A:0.61, C:0.00, G:0.10, T:0.29
Consensus pattern (15 bp):
ATAATAGTATAATAA
Found at i:83727503 original size:44 final size:43
Alignment explanation
Indices: 83727421--83728394 Score: 796
Period size: 44 Copynumber: 22.1 Consensus size: 43
83727411 TTTTCAATCC
* * *
83727421 ACTTCCTACAAATATAGGAAGGCAGGATCTGCTATCTTCGATCT
1 ACTTCC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
83727465 ACTTCACGCCAATACATGAAGACAAGACCTGCTTTCTTCGATCT
1 ACTTC-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* *
83727509 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCC
1 ACTT--CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
** * * *
83727553 ACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCT
1 ACTTCC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * *
83727597 ACTT-CATGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCT
1 ACTTCCA--CCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
*
83727641 ACTTCCTACCAATATAGGAAGAC-AGAATTTGC-ATCTTCGATCT
1 ACTTCC-ACCAATATAGGAAGACAAG-ATCTGCTATCTTCGATCT
* * * * * * *
83727684 ATTTCACGCCAATACATGAAGATAAGATCTACTTTCTTCGATCT
1 ACTTC-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
83727728 ACTTCGCCACCAGTATGGGAAGACAAGATCT-ATATCTTGGATCC
1 ACTT--CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * *
83727772 ACTTCCTATCAATAATAGGAAGATAGGACCTGCTATCTTCGATCT
1 ACTTCC-ACCAAT-ATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * * **
83727817 ACTTCACGCCAATACATGAAGACAAGACCTGCTTTCAGCGATCT
1 ACTTC-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * *
83727861 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTGGATCC
1 ACTT--CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
83727905 ACTTCCTATCAATATAGGAAGATAGGACCTGCCATCTTCGATCT
1 ACTTCC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * **
83727949 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAGCGATCT
1 ACTTC-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * *
83727993 ACTTTGCCACCAATATGGGAAGACAGGATCTGCTTTCTTCGATCT
1 AC-TT-CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* *
83728038 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCC
1 ACTT--CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * *
83728082 ACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCT
1 ACTTCC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * **
83728126 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCAGCGATCT
1 ACTTC-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * *
83728170 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTAGATCC
1 ACTT--CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * *
83728214 ACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCT
1 ACTTCC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * * *
83728258 ACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTGCGATCT
1 ACTTC-CACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * * *
83728302 ACTTCGCCACCAATATGGGAAGACAAGATCTGC-GTCGTCGATCC
1 ACTT--CCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
* * *
83728346 ACTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCT
1 ACTTCC-ACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
83728390 ACTTC
1 ACTTC
83728395 TTGCCCCGGG
Statistics
Matches: 728, Mismatches: 163, Indels: 78
0.75 0.17 0.08
Matches are distributed among these distances:
42 13 0.02
43 139 0.19
44 378 0.52
45 190 0.26
46 8 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (43 bp):
ACTTCCACCAATATAGGAAGACAAGATCTGCTATCTTCGATCT
Found at i:83727569 original size:132 final size:132
Alignment explanation
Indices: 83727417--83728394 Score: 1022
Period size: 132 Copynumber: 7.4 Consensus size: 132
83727407 CTGTTTTTCA
* *
83727417 ATCCACTTCCTACAAATATAGGAAGGCAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
83727482 GAAGACAAGACCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
83727547 CG
131 CG
* * * * *
83727549 ATCCACTTCCTACCAATATAGGAAGACCGGACCTGTTATCTTTGATCTACTTCATGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * *
83727614 GAAGACAAGATCTGCTTTCTTCGATCTACTTC-CTACCAATATAGGAAGAC-AGAATTTGCATCT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAG-ATCTGCATCT
83727677 TCG
130 TCG
* * * * * * * * * * * * *
83727680 ATCTATTTCAC-GCCAATACATGAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTAT
1 ATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC-ACGCCAATAC
** * * * * * * * * * *
83727744 GGGAAGACAAGATCT-ATATCTTGGATCCACTTC-CTATCAATAATAGGAAGATAGGACCTGCTA
64 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAAT-ATGGGAAGACAAGATCTGC-A
83727807 TCTTCG
127 TCTTCG
* * * * * * * ** * * *
83727813 ATCTACTTCAC-GCCAATACATGAAGACAAGACCTGCTTTCAGCGATCTACTTCGCCACCAATAT
1 ATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC-ACGCCAATAC
** * * * * * * * * *
83727877 GGGAAGACAAGATCTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGACCTGCCAT
64 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTG-CAT
83727940 CTTCG
128 CTTCG
* * * * * * ** *
83727945 ATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCAGCGATCTACTTTGC-CACCAATA
1 ATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC-TT-CACGCCAATA
*** *
83728008 TGGGAAGACAGGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
63 CATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
83728073 CTTCG
128 CTTCG
* *
83728078 ATCCACTTCCTACCAATATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
**
83728143 GAAGACAAGATCTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
83728208 AG
131 CG
* * *
83728210 ATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * *
83728275 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCGTCGT
66 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
83728340 CG
131 CG
* *
83728342 ATCCACTTCCTACCAATATAGGAAGATAGGATCAGCTATCTTCGATCTACTTC
1 ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTC
83728395 TTGCCCCGGG
Statistics
Matches: 745, Mismatches: 87, Indels: 28
0.87 0.10 0.03
Matches are distributed among these distances:
130 2 0.00
131 88 0.12
132 468 0.63
133 166 0.22
134 21 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (132 bp):
ATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
CG
Found at i:83728133 original size:309 final size:310
Alignment explanation
Indices: 83727701--83728394 Score: 1142
Period size: 309 Copynumber: 2.2 Consensus size: 310
83727691 GCCAATACAT
* * * **
83727701 GAAGATAAGATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATATCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
* * *
83727766 GGATCCACTTCCTATCAATAATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAATA
66 CGATCCACTTCCTACCAATAATAGGAAGATAGGACCTGATATCTTCGATCTACTTCACGCCAATA
83727831 CATGAAGACAAGACCTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
131 CATGAAGACAAGACCTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
*
83727896 CTTGGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCCATCTTCGATCTACTTCACGCCAA
196 CTTAGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCCATCTTCGATCTACTTCACGCCAA
*
83727961 TACATGAAGACAAGATCTGCTTTCAGCGATCTACTTTGCCACCAATATGG
261 TACATGAAGACAAGATCTGCTTTCAGCGATCTACTTCGCCACCAATATGG
*
83728011 GAAGACAGGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
*
83728076 CGATCCACTTCCTACCAAT-ATAGGAAGATAGGATCTGATATCTTCGATCTACTTCACGCCAATA
66 CGATCCACTTCCTACCAATAATAGGAAGATAGGACCTGATATCTTCGATCTACTTCACGCCAATA
*
83728140 CATGAAGACAAGATCTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
131 CATGAAGACAAGACCTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
*
83728205 CTTAGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCTATCTTCGATCTACTTCACGCCAA
196 CTTAGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCCATCTTCGATCTACTTCACGCCAA
*
83728270 TACATGAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGG
261 TACATGAAGACAAGATCTGCTTTCAGCGATCTACTTCGCCACCAATATGG
* * * * * * * *
83728320 GAAGACAAGATCTGC-GTCGTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCAGCTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCT
*
83728383 TCGATCTACTTC
65 TCGATCCACTTC
83728395 TTGCCCCGGG
Statistics
Matches: 358, Mismatches: 25, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
307 22 0.06
308 28 0.08
309 232 0.65
310 76 0.21
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (310 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
CGATCCACTTCCTACCAATAATAGGAAGATAGGACCTGATATCTTCGATCTACTTCACGCCAATA
CATGAAGACAAGACCTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCAT
CTTAGATCCACTTCCTATCAATATAGGAAGATAGGACCTGCCATCTTCGATCTACTTCACGCCAA
TACATGAAGACAAGATCTGCTTTCAGCGATCTACTTCGCCACCAATATGG
Found at i:83728571 original size:45 final size:45
Alignment explanation
Indices: 83728509--83728761 Score: 124
Period size: 45 Copynumber: 5.4 Consensus size: 45
83728499 GATCTGCAAT
* *
83728509 CTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGA
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAAAGTTATCGA
* * * *
83728554 CTTCAATGTACTCCACTG--TAGT-CAGGGA-AGTAAAATCTGCCATCTTTGA
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGA-TAAAGT-T---ATC---GA
* * * *
83728603 TCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGG
1 -CTTCAATCTACTCCACTGCCAAATACAGGGAGATAAAGTTATCGA
* *** * *
83728649 CTTCAATGTACTCCACTG--TGGT-CAGGGAGGTAAAATCTGCCATCTTTGA
1 CTTCAATCTACTCCACTGCCAAATACAGGGAGATAAAGT-T---ATC---GA
* * *
83728698 TCTTCAATCTATTCCACTGCCAAATACAGGGAGATATAGTTATCGG
1 -CTTCAATCTACTCCACTGCCAAATACAGGGAGATAAAGTTATCGA
*
83728744 CTTCAATGTACTCCACTG
1 CTTCAATCTACTCCACTG
83728762 TGGTCAGGGA
Statistics
Matches: 149, Mismatches: 35, Indels: 48
0.64 0.15 0.21
Matches are distributed among these distances:
41 1 0.01
42 20 0.13
43 5 0.03
45 48 0.32
46 8 0.05
49 9 0.06
50 32 0.21
52 5 0.03
53 20 0.13
54 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (45 bp):
CTTCAATCTACTCCACTGCCAAATACAGGGAGATAAAGTTATCGA
Found at i:83728613 original size:95 final size:95
Alignment explanation
Indices: 83728507--83728795 Score: 533
Period size: 95 Copynumber: 3.0 Consensus size: 95
83728497 AAGATCTGCA
*
83728507 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGACTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
* *
83728572 TAGTCAGGGAAGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
*
83728602 ATCTTCAATCTATTCCACTGCCAAATACAGAGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
83728667 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
*
83728697 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATATAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
83728762 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
66 TGGTCAGGGAGGTAAAATCTGCCATCTTTG
83728792 ATCT
1 ATCT
83728796 GCTTCGCTGC
Statistics
Matches: 188, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 188 1.00
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (95 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTTG
Found at i:83728861 original size:134 final size:134
Alignment explanation
Indices: 83728697--83728972 Score: 482
Period size: 134 Copynumber: 2.1 Consensus size: 134
83728687 GCCATCTTTG
* *
83728697 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATATAGTTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
* * *
83728762 TGGTCAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAGGAAGGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
83728827 TGCA-
131 TG-AT
83728831 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
1 ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
*
83728896 TTGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
66 TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
83728961 TGAT
131 TGAT
83728965 ATCTTCAA
1 ATCTTCAA
83728973 CCAGCTCTGC
Statistics
Matches: 135, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
133 1 0.01
134 134 0.99
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (134 bp):
ATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATGTACTCCACTG
TGGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATC
TGAT
Found at i:83729066 original size:86 final size:86
Alignment explanation
Indices: 83728920--83729183 Score: 411
Period size: 86 Copynumber: 3.1 Consensus size: 86
83728910 AAATCTGCCA
* * * *
83728920 TCTTCGATCTGCTTCGCTGCCAAATACAGAAAAGCAAGATCTGATATCTTCAACCAGCTCTGCTA
1 TCTTCGATCTGCTTCGCTGTC-AATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTA
83728985 CAAACGAGAGTGGCAAGGTTTG
65 CAAACGAGAGTGGCAAGGTTTG
* * *
83729007 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAATATCTGCTATCTTCAACCAGCTCTACTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
83729072 AAACGAGAGTGGCAAGGTTTG
66 AAACGAGAGTGGCAAGGTTTG
*
83729093 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATAACTTCAACCAGCTCTGCTAC
1 TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
* * * *
83729158 GACCGAGAGAGGCAAGGTTTA
66 AAACGAGAGTGGCAAGGTTTG
83729179 TCTTC
1 TCTTC
83729184 AATTTTTACT
Statistics
Matches: 162, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 142 0.88
87 20 0.12
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (86 bp):
TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGATATCTTCAACCAGCTCTGCTAC
AAACGAGAGTGGCAAGGTTTG
Found at i:83733312 original size:19 final size:20
Alignment explanation
Indices: 83733288--83733331 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
83733278 CGTGAAAGTC
* *
83733288 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
83733307 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
83733327 -AATGC
1 TAATGC
83733332 CAAAAGAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:83740797 original size:30 final size:24
Alignment explanation
Indices: 83740741--83740788 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
83740731 CGGGACCGAC
83740741 ATTTTTAATTATAATATATCGTGT
1 ATTTTTAATTATAATATATCGTGT
83740765 ATTTTTAATTATAATATATCGTGT
1 ATTTTTAATTATAATATATCGTGT
83740789 GATTGTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTTTAATTATAATATATCGTGT
Found at i:83742997 original size:19 final size:20
Alignment explanation
Indices: 83742960--83742997 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
83742950 CATTAAGGTG
* *
83742960 ATTTTTTATTTTTTATTTCT
1 ATTTTTAATTTTGTATTTCT
83742980 ATTTTTAATTTTGT-TTTC
1 ATTTTTAATTTTGTATTTC
83742998 AGACCCTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (20 bp):
ATTTTTAATTTTGTATTTCT
Found at i:83743066 original size:17 final size:16
Alignment explanation
Indices: 83743044--83743075 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
83743034 ATATTAACAT
83743044 AAAAAAAGAAAAATTTC
1 AAAAAAA-AAAAATTTC
83743061 AAAAAAAAAAAATTT
1 AAAAAAAAAAAATTT
83743076 ACCTTTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAAAAAAAAATTTC
Found at i:83743676 original size:3 final size:3
Alignment explanation
Indices: 83743670--83743756 Score: 58
Period size: 3 Copynumber: 29.7 Consensus size: 3
83743660 TTTTTTTACA
* *
83743670 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * *
83743714 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT T-T TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA
83743757 ACATATTAAT
Statistics
Matches: 64, Mismatches: 12, Indels: 16
0.70 0.13 0.17
Matches are distributed among these distances:
2 8 0.12
3 52 0.81
4 4 0.06
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:83743698 original size:23 final size:23
Alignment explanation
Indices: 83743672--83743717 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
83743662 TTTTTACATA
83743672 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
83743695 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
83743718 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:83743747 original size:15 final size:15
Alignment explanation
Indices: 83743683--83743756 Score: 52
Period size: 14 Copynumber: 5.3 Consensus size: 15
83743673 TATTAATATT
83743683 ATTACTATTATTTT-
1 ATTACTATTATTTTC
* *
83743697 ATTTCTATTATTATC
1 ATTACTATTATTTTC
*
83743712 -TT--TATTA-TTAC
1 ATTACTATTATTTTC
* *
83743723 TGTTAGTATTATTTTC
1 -ATTACTATTATTTTC
83743739 ATTACTATTATTTT-
1 ATTACTATTATTTTC
83743753 ATTA
1 ATTA
83743757 ACATATTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 12
0.71 0.11 0.18
Matches are distributed among these distances:
11 2 0.04
12 5 0.11
13 2 0.04
14 18 0.38
15 17 0.36
16 3 0.06
ACGTcount: A:0.27, C:0.08, G:0.03, T:0.62
Consensus pattern (15 bp):
ATTACTATTATTTTC
Found at i:83743782 original size:19 final size:20
Alignment explanation
Indices: 83743745--83743783 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
83743735 TTTCATTACT
*
83743745 ATTATTTTATTAACATATTA
1 ATTATTTTACTAACATATTA
*
83743765 ATTATTTT-CTAACGTATTA
1 ATTATTTTACTAACATATTA
83743784 TAATTACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (20 bp):
ATTATTTTACTAACATATTA
Found at i:83743874 original size:12 final size:12
Alignment explanation
Indices: 83743836--83743874 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
83743826 AATATTAGTG
83743836 TATGTATATTATA
1 TATGTATA-TATA
*
83743849 TATGTATGTATA
1 TATGTATATATA
*
83743861 TATGTTTATATA
1 TATGTATATATA
83743873 TA
1 TA
83743875 GTACTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (12 bp):
TATGTATATATA
Found at i:83744064 original size:20 final size:19
Alignment explanation
Indices: 83744012--83744175 Score: 86
Period size: 21 Copynumber: 7.9 Consensus size: 19
83744002 TAAATGTTTA
83744012 AATATTATATTATATATTCTT
1 AATATTATA-TATATATT-TT
*
83744033 CATATATGTTATATATATGTTTT
1 -A-ATA--TTATATATATATTTT
83744056 CAATATTATAT-T-T-TTTT
1 -AATATTATATATATATTTT
83744073 ATATATTAT-TATATATTTT
1 A-ATATTATATATATATTTT
83744092 AATATTATTAGTTATATATTTTTT
1 AATATTA-TA--TATATA--TTTT
*
83744116 AAACTATTATATGTATATTTAT
1 -AA-TATTATATATATATTT-T
*
83744138 AATATTATATTGTATATTTCT
1 AATATTATA-TATATATTT-T
* *
83744159 AATACTAT-TATTTATTT
1 AATATTATATATATATTT
83744176 ATGTATATAT
Statistics
Matches: 119, Mismatches: 6, Indels: 37
0.73 0.04 0.23
Matches are distributed among these distances:
16 2 0.02
17 12 0.10
18 8 0.07
19 14 0.12
20 13 0.11
21 22 0.18
22 11 0.09
23 12 0.10
24 11 0.09
25 9 0.08
26 5 0.04
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.59
Consensus pattern (19 bp):
AATATTATATATATATTTT
Found at i:83744079 original size:12 final size:12
Alignment explanation
Indices: 83744013--83744113 Score: 52
Period size: 12 Copynumber: 8.6 Consensus size: 12
83744003 AAATGTTTAA
*
83744013 ATATTATATTAT
1 ATATTTTATTAT
* *
83744025 ATATTCT-TCAT
1 ATATTTTATTAT
*
83744036 ATATGTTATATAT
1 ATATTTTAT-TAT
* *
83744049 ATGTTTTCAATATT
1 ATATTTT-ATTA-T
83744063 ATATTTT-TT-T
1 ATATTTTATTAT
*
83744073 ATATATTATTAT
1 ATATTTTATTAT
83744085 ATATTTTA--AT
1 ATATTTTATTAT
*
83744095 AT-TATTAGTTAT
1 ATATTTTA-TTAT
83744107 ATATTTT
1 ATATTTT
83744114 TTAAACTATT
Statistics
Matches: 65, Mismatches: 14, Indels: 19
0.66 0.14 0.19
Matches are distributed among these distances:
9 4 0.06
10 11 0.17
11 10 0.15
12 20 0.31
13 12 0.18
14 8 0.12
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (12 bp):
ATATTTTATTAT
Found at i:83744090 original size:22 final size:22
Alignment explanation
Indices: 83744062--83744115 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
83744052 TTTTCAATAT
83744062 TATATTTTTTTATATATTA-TTA
1 TATATTTTTTTAT-TATTAGTTA
**
83744084 TATATTTTAATATTATTAGTTA
1 TATATTTTTTTATTATTAGTTA
83744106 TATATTTTTT
1 TATATTTTTT
83744116 AAACTATTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 5 0.19
22 22 0.81
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
TATATTTTTTTATTATTAGTTA
Found at i:83744100 original size:18 final size:18
Alignment explanation
Indices: 83744041--83744101 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
83744031 TTCATATATG
*
83744041 TTATATATATGTTTTCAATA
1 TTAT-TATATATTTT-AATA
*
83744061 TTA-TAT-TTTTTTATATA
1 TTATTATATATTTTA-ATA
83744078 TTATTATATATTTTAATA
1 TTATTATATATTTTAATA
83744096 TTATTA
1 TTATTA
83744102 GTTATATATT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
16 1 0.03
17 11 0.31
18 15 0.42
19 6 0.17
20 3 0.08
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TTATTATATATTTTAATA
Found at i:83744125 original size:44 final size:43
Alignment explanation
Indices: 83744058--83744170 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 43
83744048 TATGTTTTCA
*
83744058 ATATTATAT-TTTTTTATA-TATTATTATATATTT-TAATATT
1 ATATTATATATTTTTTAAACTATTATTATATATTTATAATATT
*
83744098 ATTAGTTATATATTTTTTAAACTATTATATGTATATTTATAATATT
1 A-TA-TTATATATTTTTTAAACTATTAT-TATATATTTATAATATT
* *
83744144 ATATTGTATA-TTTCTAATACTATTATT
1 ATATTATATATTTTTTAA-ACTATTATT
83744171 TATTTATGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
40 1 0.02
41 2 0.03
42 6 0.10
43 15 0.24
44 20 0.32
45 10 0.16
46 8 0.13
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (43 bp):
ATATTATATATTTTTTAAACTATTATTATATATTTATAATATT
Found at i:83744200 original size:18 final size:19
Alignment explanation
Indices: 83744177--83744214 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
83744167 TATTTATTTA
83744177 TGTATATATATGTGT-GTG
1 TGTATATATATGTGTAGTG
*
83744195 TGTATATATTTGTGTAGTG
1 TGTATATATATGTGTAGTG
83744214 T
1 T
83744215 ACAAAGTAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (19 bp):
TGTATATATATGTGTAGTG
Found at i:83744202 original size:16 final size:17
Alignment explanation
Indices: 83744181--83744215 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
83744171 TATTTATGTA
83744181 TATATATGTGTGT-GTG
1 TATATATGTGTGTAGTG
*
83744197 TATATATTTGTGTAGTG
1 TATATATGTGTGTAGTG
83744214 TA
1 TA
83744216 CAAAGTAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (17 bp):
TATATATGTGTGTAGTG
Found at i:83744412 original size:29 final size:29
Alignment explanation
Indices: 83744363--83744424 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
83744353 CCATCTTATG
**
83744363 TATATATTTTAATTATTATATTGTGTATA
1 TATATATTTTAATTACCATATTGTGTATA
83744392 TATATATTCTTAA-TACCATATTGTGTATA
1 TATATATT-TTAATTACCATATTGTGTATA
83744421 TATA
1 TATA
83744425 ATTATTACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.53
Consensus pattern (29 bp):
TATATATTTTAATTACCATATTGTGTATA
Found at i:83748124 original size:18 final size:19
Alignment explanation
Indices: 83748092--83748137 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
83748082 TAGGGCGCGT
83748092 TTTCAAAAACAAAAATTGA
1 TTTCAAAAACAAAAATTGA
83748111 TTTCAAAAACAAAAATTGA
1 TTTCAAAAACAAAAATTGA
83748130 TTTCAAAA
1 TTTCAAAA
83748138 TAACATGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.57, C:0.11, G:0.04, T:0.28
Consensus pattern (19 bp):
TTTCAAAAACAAAAATTGA
Found at i:83752105 original size:22 final size:23
Alignment explanation
Indices: 83752079--83752125 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
83752069 TAAAAGAAAT
83752079 AGAATAAAGAAAAGA-AACAAAA
1 AGAATAAAGAAAAGAGAACAAAA
* *
83752101 AGAATAGAGAAAAGAGAACAGAA
1 AGAATAAAGAAAAGAGAACAAAA
83752124 AG
1 AG
83752126 CATTCGAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.70, C:0.04, G:0.21, T:0.04
Consensus pattern (23 bp):
AGAATAAAGAAAAGAGAACAAAA
Found at i:83752114 original size:27 final size:30
Alignment explanation
Indices: 83752070--83752124 Score: 73
Period size: 27 Copynumber: 1.9 Consensus size: 30
83752060 TAAAGTAAAT
83752070 AAAAGAAATAGAATAAAGA-AA-AGAAACA
1 AAAAGAAATAGAATAAAGAGAACAGAAACA
83752098 AAAAG-AATAGAGA-AAAGAGAACAGAAA
1 AAAAGAAATAGA-ATAAAGAGAACAGAAA
83752125 GCATTCGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 11 0.46
28 8 0.33
29 5 0.21
ACGTcount: A:0.73, C:0.04, G:0.18, T:0.05
Consensus pattern (30 bp):
AAAAGAAATAGAATAAAGAGAACAGAAACA
Found at i:83753569 original size:21 final size:21
Alignment explanation
Indices: 83753533--83753606 Score: 94
Period size: 21 Copynumber: 3.5 Consensus size: 21
83753523 AGGTACTTTA
83753533 TGTGTCGTATTCAGGCACCTCG
1 TGTGTCGTA-TCAGGCACCTCG
83753555 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
* * * **
83753576 TGTGTCGTTTTAGGCACTTTA
1 TGTGTCGTATCAGGCACCTCG
83753597 TGTGTCGTAT
1 TGTGTCGTAT
83753607 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 37 0.80
22 9 0.20
ACGTcount: A:0.14, C:0.22, G:0.27, T:0.38
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:83762854 original size:75 final size:74
Alignment explanation
Indices: 83762744--83763337 Score: 721
Period size: 75 Copynumber: 8.0 Consensus size: 74
83762734 CTACGGTTCA
* * * * * * *
83762744 AAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACATGTTGAGTTATTTTCAAT
1 AAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTTCAAT
*
83762809 TTCTG-CCTTC
64 TTCTGTCTTTC
* * * * * * * * *
83762819 CAAAAATCAACTTATATTGCGAGAGGTAAGTTGAGCCTTAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
83762884 CTGTCTTTC
66 CTGTCTTTC
* * *** * *
83762893 AAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTT-
1 ----AAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTC
*
83762957 TATTTCTG--TTTC
61 AATTTCTGTCTTTC
* *
83762969 -AAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
83763033 CTGTCTTTC
66 CTGTCTTTC
*
83763042 AAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAA-TCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
83763107 TCTGTCTTTC
65 TCTGTCTTTC
83763117 AAAAAATTCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
1 AAAAAA-TCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
83763182 TCTGTCTTTC
65 TCTGTCTTTC
* * * *
83763192 AAAAAATTCAACTTATACTGCAAGAAGTGAGTTGAGCCTCAAGACACATTGAGGTATTTTCCATT
1 AAAAAA-TCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATT
*
83763257 TCTATCTTTC
65 TCTGTCTTTC
* ** * *
83763267 AAAAAATCAACTCATATTGTTAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTT
1 AAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
83763332 CTGTCT
66 CTGTCT
83763338 CAAGACACGC
Statistics
Matches: 464, Mismatches: 44, Indels: 23
0.87 0.08 0.04
Matches are distributed among these distances:
70 5 0.01
71 51 0.11
73 27 0.06
74 66 0.14
75 251 0.54
76 4 0.01
78 56 0.12
79 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (74 bp):
AAAAAATCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTT
CTGTCTTTC
Found at i:83763279 original size:299 final size:297
Alignment explanation
Indices: 83762740--83763337 Score: 754
Period size: 299 Copynumber: 2.0 Consensus size: 297
83762730 ATTTCTACGG
* * * * * * * *
83762740 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTTGACTGACATGTTGAGTTATTTT
1 TTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTTCACAGACACGTTGAGGTATTTT
* * * * * *
83762805 CAATTTCTGCCTTCCAAAAATCAACTTATATTGCGAGAGGTAAGTTGAGCCTTAGGACACGCTGA
66 CAATTTCTGCCTTCAAAAAATCAACTCATACTGCGAGAAGTAAGTTGAGCCTCAAGACACGCTGA
* * *
83762870 GGTAATTTCAATTTCTGTCTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
131 GGTAATTTCAATTTCTGTCTTTC--AAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCT
*** * * * *
83762935 TGGGACACGCTGAGATAATTTTTATTTCTGTTTCAAAATTCAACTCATACTGCAAGAAGTGAGTT
194 CAAGACACACTGAGATAATTTTCATTTCTCTTTCAAAAATCAACTCATACTGCAAGAAGTGAGTT
83763000 GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
259 GAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
*
83763039 TTCAAAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCC-TCA-AGACACGTTGAGGTATTTT
1 TTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTTCACAGACACGTTGAGGTATTTT
* * *
83763102 CAATTTCTGTCTTTCAAAAAATTCAACTCATACTGCGAGAAGTGAGTTGAGCCTCAAGACACGTT
66 CAATTTCTG-CCTTCAAAAAA-TCAACTCATACTGCGAGAAGTAAGTTGAGCCTCAAGACACGCT
* * *
83763167 GAGGTATTTTCAATTTCTGTCTTTC-AAAAAATTCAACTTATACTGCAAGAAGTGAGTTGAGCCT
129 GAGGTAATTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCT
* * * ** *
83763231 CAAGACACATTGAGGT-ATTTTCCATTTCTATCTTTCAAAAAATCAACTCATATTGTTAGAGGTG
194 CAAGACACACTGAGATAATTTT-CATTTC--TCTTTC-AAAAATCAACTCATACTGCAAGAAGTG
*
83763295 AGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGTCT
255 AGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
83763338 CAAGACACGC
Statistics
Matches: 255, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
295 5 0.02
296 49 0.19
297 25 0.10
298 16 0.06
299 160 0.63
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33
Consensus pattern (297 bp):
TTCAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTTCACAGACACGTTGAGGTATTTT
CAATTTCTGCCTTCAAAAAATCAACTCATACTGCGAGAAGTAAGTTGAGCCTCAAGACACGCTGA
GGTAATTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCA
AGACACACTGAGATAATTTTCATTTCTCTTTCAAAAATCAACTCATACTGCAAGAAGTGAGTTGA
GCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT
Found at i:83763345 original size:33 final size:33
Alignment explanation
Indices: 83763303--83763370 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 33
83763293 TGAGTTGAGC
* **
83763303 CTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
83763336 CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
83763369 CT
1 CT
83763371 TTCAAGATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.37
Consensus pattern (33 bp):
CTCAAGACACGCTGAGGTAATTTCAATTTCTGT
Found at i:83763420 original size:108 final size:107
Alignment explanation
Indices: 83763229--83763428 Score: 301
Period size: 108 Copynumber: 1.9 Consensus size: 107
83763219 TGAGTTGAGC
* * * **
83763229 CTCAAGACACATTGAGGTATTTTCCATTTCTATCTTTCAAAAAATCAACTCATATTGTTAGAGGT
1 CTCAAGACACACTGAGGTAATTTCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGT
*
83763294 GAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
66 GAGTTGAGCCTCAAGACACGCTGAGGTGTTTTCAATTTCTGT
* * *
83763336 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAGATAATCAACTCATATTGCGAGAGG
1 CTCAAGACACACTGAGGTAATTTCAATTTCTATCTTTCAA-AAAATCAACTCATATTGCGAGAGG
*
83763401 TGAGTTGAGCCTCAGGACACGCTGAGGT
65 TGAGTTGAGCCTCAAGACACGCTGAGGT
83763429 AATTTTGATC
Statistics
Matches: 82, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
107 35 0.43
108 47 0.57
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (107 bp):
CTCAAGACACACTGAGGTAATTTCAATTTCTATCTTTCAAAAAATCAACTCATATTGCGAGAGGT
GAGTTGAGCCTCAAGACACGCTGAGGTGTTTTCAATTTCTGT
Found at i:83763474 original size:72 final size:75
Alignment explanation
Indices: 83763336--83763485 Score: 225
Period size: 72 Copynumber: 2.0 Consensus size: 75
83763326 CAATTTCTGT
* *
83763336 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAGATAATCAACTCATATTGCGAGAGG
1 CTCAAGACACGCTGAGGTAATTTCAATCTCTGTCTTTCAAGATAATCAACTCATATTGCAAGAGG
*
83763401 TGAGTTGAGC
66 TGAGTGGAGC
* **
83763411 CTCAGGACACGCTGAGGTAATTTTGATCTCTGT-TTTCAA-A-AATCAACTCATATTGCAAGAGG
1 CTCAAGACACGCTGAGGTAATTTCAATCTCTGTCTTTCAAGATAATCAACTCATATTGCAAGAGG
83763473 TGAGTGGAGC
66 TGAGTGGAGC
83763483 CTC
1 CTC
83763486 GGATCACATG
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
72 33 0.48
73 1 0.01
74 6 0.09
75 29 0.42
ACGTcount: A:0.29, C:0.19, G:0.22, T:0.30
Consensus pattern (75 bp):
CTCAAGACACGCTGAGGTAATTTCAATCTCTGTCTTTCAAGATAATCAACTCATATTGCAAGAGG
TGAGTGGAGC
Found at i:83763510 original size:182 final size:182
Alignment explanation
Indices: 83763154--83763516 Score: 466
Period size: 182 Copynumber: 2.0 Consensus size: 182
83763144 TGAGTTGAGC
* * *
83763154 CTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAATTCAACTTATACTGCAAGAAG
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTGCAAGAAG
* *
83763219 TGAGTTGAGCCTCAAGACACATTGAGGTATTTTCCATTTCTATCTTTCAAAAAATCAACTCATAT
66 TGAGTTGAGCCTCAAGACACACTGAGGTATTTTCCATCTCTATCTTTCAAAAAATCAACTCATAT
** * * * *
83763284 TGTTAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTGTTTTCAATTTCTGT
131 TGCAAGAGGTGAGTGGAGCCTCAAGACACGTCGAGGTATTTTCAAATTCTGT
* * * *
83763336 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAGATAA-TCAACTCATATTGCGAGAG
1 CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAA-AAAATTCAACTCATACTGCAAGAA
* * * *
83763400 GTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTT-GATCTCTGT-TTTC-AAAAATCAACTCAT
65 GTGAGTTGAGCCTCAAGACACACTGAGGT-ATTTTCCATCTCTATCTTTCAAAAAATCAACTCAT
*
83763462 ATTGCAAGAGGTGAGTGGAGCCTC-GGATCACATGTCGAGGTATTTTCAAATTCTG
129 ATTGCAAGAGGTGAGTGGAGCCTCAAGA-CAC--GTCGAGGTATTTTCAAATTCTG
83763517 CTTTTCAAAT
Statistics
Matches: 156, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
179 2 0.01
180 38 0.24
181 4 0.03
182 104 0.67
183 8 0.05
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (182 bp):
CTCAAGACACGCTGAGGTAATTTCAATTTCTGTCTTTCAAAAAATTCAACTCATACTGCAAGAAG
TGAGTTGAGCCTCAAGACACACTGAGGTATTTTCCATCTCTATCTTTCAAAAAATCAACTCATAT
TGCAAGAGGTGAGTGGAGCCTCAAGACACGTCGAGGTATTTTCAAATTCTGT
Found at i:83763593 original size:87 final size:87
Alignment explanation
Indices: 83763444--83763602 Score: 230
Period size: 87 Copynumber: 1.8 Consensus size: 87
83763434 TGATCTCTGT
* * *
83763444 TTTCAAAAATCAACTCATATTGCAAGAGGTGAGTGGAGCCTCGGATCACATGTCGAGGTATTTTC
1 TTTCAAAAACCAACTCATATTGCAAGAAGTGAGTGGAGCCTCGGATCACATGTCGAGCTATTTTC
83763509 AAATTCTGCTTTTCAAATTAAG
66 AAATTCTGCTTTTCAAATTAAG
* * * *
83763531 TTTCAAAAACCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACATG-CTGAGCTATTTT
1 TTTCAAAAACCAACTCATATTGCAAGAAGTGAGTGGAGCCTCGGATCACATGTC-GAGCTATTTT
*
83763595 CAATTTCT
65 CAAATTCT
83763603 ATTTTTAATG
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 1 0.02
87 62 0.98
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Consensus pattern (87 bp):
TTTCAAAAACCAACTCATATTGCAAGAAGTGAGTGGAGCCTCGGATCACATGTCGAGCTATTTTC
AAATTCTGCTTTTCAAATTAAG
Found at i:83763621 original size:13 final size:13
Alignment explanation
Indices: 83763588--83763623 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
83763578 ACATGCTGAG
* *
83763588 CTATTTTCAATTT
1 CTATTTTTAATGT
83763601 CTATTTTTAATGT
1 CTATTTTTAATGT
83763614 CTATTTTTAA
1 CTATTTTTAA
83763624 AGAGTCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.03, T:0.61
Consensus pattern (13 bp):
CTATTTTTAATGT
Found at i:83764458 original size:43 final size:43
Alignment explanation
Indices: 83764406--83764497 Score: 177
Period size: 43 Copynumber: 2.2 Consensus size: 43
83764396 GGCTATAAAG
83764406 CCAA-GAAGAAATCAAAACAATGGGGGGATTTTGGTCTCAATA
1 CCAAGGAAGAAATCAAAACAATGGGGGGATTTTGGTCTCAATA
83764448 CCAAGGAAGAAATCAAAACAATGGGGGGATTTTGGTCTCAATA
1 CCAAGGAAGAAATCAAAACAATGGGGGGATTTTGGTCTCAATA
83764491 CCAAGGA
1 CCAAGGA
83764498 TTCTAATATA
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
42 4 0.08
43 45 0.92
ACGTcount: A:0.40, C:0.15, G:0.25, T:0.20
Consensus pattern (43 bp):
CCAAGGAAGAAATCAAAACAATGGGGGGATTTTGGTCTCAATA
Found at i:83765276 original size:3 final size:3
Alignment explanation
Indices: 83765270--83765357 Score: 58
Period size: 3 Copynumber: 29.7 Consensus size: 3
83765260 TTTTTTTACA
* *
83765270 TAT TAT TAA TAT TAT TAC TAT TAT T-T TAT T-T CTAT TAT TAT CT-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT
* * * * *
83765314 TAT TAT TAC TGT TAG TAT TAT T-T TCAT TAC TAT TAT TTT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TA
83765358 ACATATTAAT
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
2 6 0.09
3 54 0.84
4 4 0.06
ACGTcount: A:0.28, C:0.07, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:83765298 original size:23 final size:23
Alignment explanation
Indices: 83765272--83765317 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
83765262 TTTTTACATA
83765272 TTATTAATATTATTA-CTATTATT
1 TTATTAATATTATTATCT-TTATT
**
83765295 TTATTTCTATTATTATCTTTATT
1 TTATTAATATTATTATCTTTATT
83765318 ATTACTGTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (23 bp):
TTATTAATATTATTATCTTTATT
Found at i:83765474 original size:12 final size:12
Alignment explanation
Indices: 83765436--83765474 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
83765426 AATATTAGTG
83765436 TATGTATATTATA
1 TATGTATA-TATA
*
83765449 TATGTATGTATA
1 TATGTATATATA
*
83765461 TATGTTTATATA
1 TATGTATATATA
83765473 TA
1 TA
83765475 GTACTATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
12 16 0.70
13 7 0.30
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.54
Consensus pattern (12 bp):
TATGTATATATA
Found at i:83765664 original size:20 final size:20
Alignment explanation
Indices: 83765594--83765666 Score: 58
Period size: 20 Copynumber: 3.5 Consensus size: 20
83765584 TAATATGTAT
* * *
83765594 ATATTATGTAAATG-TTTAA
1 ATATTATATATATGTTTTCA
*
83765613 ATATTATATTATATATTCTTCA
1 ATATTATA-TATATGTT-TTCA
83765635 TATATGTTATATATATGTTTTCA
1 -ATA--TTATATATATGTTTTCA
83765658 ATATTATAT
1 ATATTATAT
83765667 TTTTTATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
19 7 0.16
20 10 0.23
21 1 0.02
22 6 0.14
23 7 0.16
24 7 0.16
25 5 0.12
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.53
Consensus pattern (20 bp):
ATATTATATATATGTTTTCA
Found at i:83765665 original size:18 final size:16
Alignment explanation
Indices: 83765644--83765698 Score: 58
Period size: 18 Copynumber: 3.2 Consensus size: 16
83765634 ATATATGTTA
83765644 TATATATGTTTTCAATAT
1 TATATAT-TTTT-AATAT
83765662 TATAT-TTTTTATATAT
1 TATATATTTTTA-ATAT
83765678 TATTATATATTTTAATAT
1 TA-TATAT-TTTTAATAT
83765696 TAT
1 TAT
83765699 TAGTTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 9
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.03
16 10 0.30
17 5 0.15
18 12 0.36
19 5 0.15
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (16 bp):
TATATATTTTTAATAT
Found at i:83765671 original size:16 final size:15
Alignment explanation
Indices: 83765646--83765698 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
83765636 ATATGTTATA
*
83765646 TATATGTTTTCAATAT
1 TATAT-TTTTTAATAT
83765662 TATATTTTTTATATAT
1 TATATTTTTTA-ATAT
83765678 TATTATATATTTTAATAT
1 TA-TAT-T-TTTTAATAT
83765696 TAT
1 TAT
83765699 TAGTTATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
15 5 0.16
16 11 0.34
17 4 0.12
18 7 0.22
19 5 0.16
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (15 bp):
TATATTTTTTAATAT
Found at i:83765678 original size:61 final size:65
Alignment explanation
Indices: 83765608--83765776 Score: 176
Period size: 59 Copynumber: 2.7 Consensus size: 65
83765598 TATGTAAATG
* * *
83765608 TTTAAATATTATATTATATATTCTTCATA-TA-T-GTTATATATATGTTTTCAA-TATTATAT-T
1 TTTATATATTATATTATATATT-TTAATATTATTAGTTATATAT-T-TTTTAAACTATTATATGT
83765668 -T-
63 ATA
83765669 TTTATATA-T-TATTATATATTTTAATATTATTAGTTATATATTTTTTAAACTATTATATGTATA
1 TTTATATATTATATTATATATTTTAATATTATTAGTTATATATTTTTTAAACTATTATATGTATA
* * *
83765732 TTTATAATATTATATTGTATATTTCTAATACTATTATTTATATAT
1 TTTAT-ATATTATATTATATATTT-TAATATTATTAGTTATATAT
83765777 GTATATATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
58 5 0.05
59 19 0.21
60 11 0.12
61 17 0.19
62 1 0.01
63 5 0.05
64 3 0.03
65 1 0.01
66 11 0.12
67 18 0.20
ACGTcount: A:0.36, C:0.04, G:0.03, T:0.58
Consensus pattern (65 bp):
TTTATATATTATATTATATATTTTAATATTATTAGTTATATATTTTTTAAACTATTATATGTATA
Found at i:83765683 original size:19 final size:18
Alignment explanation
Indices: 83765659--83765700 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
83765649 ATGTTTTCAA
*
83765659 TATTATATTTTTTATATAT
1 TATTATATATTTTA-ATAT
83765678 TATTATATATTTTAATAT
1 TATTATATATTTTAATAT
83765696 TATTA
1 TATTA
83765701 GTTATATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TATTATATATTTTAATAT
Found at i:83765688 original size:21 final size:22
Alignment explanation
Indices: 83765659--83765776 Score: 104
Period size: 21 Copynumber: 5.5 Consensus size: 22
83765649 ATGTTTTCAA
83765659 TATTATAT-TTTTT-ATA-TAT
1 TATTATATATTTTTAATACTAT
*
83765678 TATTATATA-TTTTAATATTAT
1 TATTATATATTTTTAATACTAT
83765699 TAGTTATATATTTTTTAA-ACTAT
1 TA-TTATATA-TTTTTAATACTAT
* * *
83765722 TATATGTATATTTATAATATTA-
1 TAT-TATATATTTTTAATACTAT
* *
83765744 TATTGTATATTTCTAATACTAT
1 TATTATATATTTTTAATACTAT
83765766 TATTTATATAT
1 TA-TTATATAT
83765777 GTATATATAT
Statistics
Matches: 82, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
19 12 0.15
20 3 0.04
21 21 0.26
22 19 0.23
23 21 0.26
24 6 0.07
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (22 bp):
TATTATATATTTTTAATACTAT
Done.