Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 262 of 295
Found at i:83765695 original size:8 final size:9
Alignment explanation
Indices: 83765621--83765712 Score: 53
Period size: 11 Copynumber: 9.2 Consensus size: 9
83765611 AAATATTATA
83765621 TTATATATT
1 TTATATATT
83765630 CTTCATATATGT
1 -TT-ATATAT-T
83765642 TATATATATGT
1 T-TATATAT-T
*
83765653 TT-TCA-ATA
1 TTAT-ATATT
*
83765661 TTATATTTT
1 TTATATATT
83765670 TTATATATT
1 TTATATATT
83765679 ATTATATATT
1 -TTATATATT
83765689 TTAATATTATT
1 TT-ATA-TATT
83765700 AGTTATATATT
1 --TTATATATT
83765711 TT
1 TT
83765713 TTAAACTATT
Statistics
Matches: 67, Mismatches: 4, Indels: 23
0.71 0.04 0.24
Matches are distributed among these distances:
8 3 0.04
9 17 0.25
10 16 0.24
11 24 0.36
12 5 0.07
13 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (9 bp):
TTATATATT
Found at i:83765709 original size:34 final size:36
Alignment explanation
Indices: 83765634--83765709 Score: 86
Period size: 34 Copynumber: 2.2 Consensus size: 36
83765624 TATATTCTTC
* * *
83765634 ATATATGTTATATATATGTTTTCAATATTATATTTT
1 ATATATATTATATATATATTTTCAATATTATATGTT
*
83765670 TTATATATTAT-TATATATTTT-AATATTAT-TAGTT
1 ATATATATTATATATATATTTTCAATATTATAT-GTT
83765704 ATATAT
1 ATATAT
83765710 TTTTTAAACT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
33 1 0.03
34 15 0.44
35 9 0.26
36 9 0.26
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (36 bp):
ATATATATTATATATATATTTTCAATATTATATGTT
Found at i:83765753 original size:44 final size:45
Alignment explanation
Indices: 83765662--83765786 Score: 134
Period size: 44 Copynumber: 2.8 Consensus size: 45
83765652 TTTTCAATAT
*
83765662 TATATTTTTTATA-TATTATTATATATTT-TAATATTATTAGTTA
1 TATATTTTTTAAACTATTATTATATATTTATAATATTATTAGTTA
* *
83765705 TATATTTTTTAAACTATTATATGTATATTTATAATATTA-TA-TTG
1 TATATTTTTTAAACTATTAT-TATATATTTATAATATTATTAGTTA
* *
83765749 TATA-TTTCTAATACTATTATTTATATATGTATATATAT
1 TATATTTTTTAA-ACTATTA-TTATATATTTATA-ATAT
83765787 GTGTGTGTAT
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
43 18 0.26
44 29 0.41
45 15 0.21
46 8 0.11
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.58
Consensus pattern (45 bp):
TATATTTTTTAAACTATTATTATATATTTATAATATTATTAGTTA
Found at i:83765797 original size:16 final size:17
Alignment explanation
Indices: 83765776--83765812 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
83765766 TATTTATATA
83765776 TGTATATATATGTGT-G
1 TGTATATATATGTGTAG
*
83765792 TGTATATATTTGTGTAG
1 TGTATATATATGTGTAG
83765809 TGTA
1 TGTA
83765813 CAAAGTAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (17 bp):
TGTATATATATGTGTAG
Found at i:83766007 original size:29 final size:29
Alignment explanation
Indices: 83765958--83766018 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 29
83765948 CCATCTTATG
**
83765958 TATATATTTTAATTATTATATTGTGTATA
1 TATATATTTTAATTACCATATTGTGTATA
83765987 TATATATTCTTAA-TACCATATTGTGTATA
1 TATATATT-TTAATTACCATATTGTGTATA
83766016 TAT
1 TAT
83766019 CATTATTACA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 25 0.86
30 4 0.14
ACGTcount: A:0.34, C:0.05, G:0.07, T:0.54
Consensus pattern (29 bp):
TATATATTTTAATTACCATATTGTGTATA
Found at i:83769682 original size:14 final size:14
Alignment explanation
Indices: 83769646--83769698 Score: 61
Period size: 14 Copynumber: 3.8 Consensus size: 14
83769636 GGTGTATGAT
*
83769646 TTTGGGGTTTAAAG
1 TTTGGGGTTTAGAG
* * *
83769660 TATGGGGTTTTGTG
1 TTTGGGGTTTAGAG
*
83769674 TTTGTGGTTTAGAG
1 TTTGGGGTTTAGAG
83769688 TTTGGGGTTTA
1 TTTGGGGTTTA
83769699 TACTTTGGGT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.13, C:0.00, G:0.38, T:0.49
Consensus pattern (14 bp):
TTTGGGGTTTAGAG
Found at i:83770148 original size:17 final size:17
Alignment explanation
Indices: 83770126--83770161 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
83770116 TACTGTTGAA
83770126 GACTGAAGCAATATTTG
1 GACTGAAGCAATATTTG
83770143 GACTGAAGCAATATTTG
1 GACTGAAGCAATATTTG
83770160 GA
1 GA
83770162 ATTTTATGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (17 bp):
GACTGAAGCAATATTTG
Found at i:83772728 original size:12 final size:12
Alignment explanation
Indices: 83772711--83772735 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
83772701 TAATGTGTTC
83772711 ATTATGTCTTTG
1 ATTATGTCTTTG
83772723 ATTATGTCTTTG
1 ATTATGTCTTTG
83772735 A
1 A
83772736 AGCTTGGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.16, T:0.56
Consensus pattern (12 bp):
ATTATGTCTTTG
Found at i:83775294 original size:20 final size:20
Alignment explanation
Indices: 83775269--83775314 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
83775259 ATTGGGTTTT
83775269 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
83775289 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
83775308 GCCCATA
1 GCCCATA
83775315 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:83775323 original size:19 final size:20
Alignment explanation
Indices: 83775281--83775324 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
83775271 CCATATTAAC
** *
83775281 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
83775301 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
83775320 ACAGT
1 ACAGT
83775325 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:83778128 original size:34 final size:35
Alignment explanation
Indices: 83778070--83778141 Score: 85
Period size: 34 Copynumber: 2.1 Consensus size: 35
83778060 CGTATCCTAG
*
83778070 CTACAGTCTCAATCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAATCTTCTAAAG-TTTCAGTATTACC
* * *
83778105 CTACTGTCTCAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAATCTTCTAAAGTTTCAGTATTACC
83778139 CTA
1 CTA
83778142 ACTATAGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 7 0.22
34 14 0.44
35 11 0.34
ACGTcount: A:0.22, C:0.26, G:0.10, T:0.42
Consensus pattern (35 bp):
CTACAGTCTCAATCTTCTAAAGTTTCAGTATTACC
Found at i:83779287 original size:60 final size:60
Alignment explanation
Indices: 83779210--83779335 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
83779200 GGGTCTTAGT
* *
83779210 CCATATCAATATTAATCTGGGCCATAGCCC-CTTACAATATC-AGAGTATATTGGGCCTAGC
1 CCATATCAATATCAATCTGGGCCATAGCCCTATTACAA-ATCAAGA-TATATTGGGCCTAGC
* * * * *
83779270 CCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCAAGATATATTGGTCCTTGC
1 CCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCAAGATATATTGGGCCTAGC
83779330 CCATAT
1 CCATAT
83779336 TAACACAGTT
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
60 48 0.84
61 9 0.16
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (60 bp):
CCATATCAATATCAATCTGGGCCATAGCCCTATTACAAATCAAGATATATTGGGCCTAGC
Found at i:83779382 original size:19 final size:20
Alignment explanation
Indices: 83779328--83779383 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 20
83779318 ATTGGTCCTT
*
83779328 GCCCATATTAACACAGTTGG
1 GCCCATATTAAAACAGTTGG
*
83779348 GCCCAT-TTCAATACAGTT-G
1 GCCCATATT-AAAACAGTTGG
*
83779367 GCCCATAATAAAACAGT
1 GCCCATATTAAAACAGT
83779384 CTCATATGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (20 bp):
GCCCATATTAAAACAGTTGG
Found at i:83785086 original size:91 final size:91
Alignment explanation
Indices: 83784984--83785168 Score: 343
Period size: 91 Copynumber: 2.0 Consensus size: 91
83784974 TAACATCAAT
* *
83784984 AAACACTTTTAAGACATATTTAATAAAACTAATGTGAACTAAATTTAATATGTGGTTTATTAATT
1 AAACACTTTTAAGACATATTTAATAAAACTAATGCGAACTAAATTTAATATGTGGTTTATTAATA
*
83785049 AACTAATTAATGAGCTTATTAAATAA
66 AACTAATTAATGAACTTATTAAATAA
83785075 AAACACTTTTAAGACATATTTAATAAAACTAATGCGAACTAAATTTAATATGTGGTTTATTAATA
1 AAACACTTTTAAGACATATTTAATAAAACTAATGCGAACTAAATTTAATATGTGGTTTATTAATA
83785140 AACTAATTAATGAACTTATTAAATAA
66 AACTAATTAATGAACTTATTAAATAA
83785166 AAA
1 AAA
83785169 TTTAATAGCA
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.37
Consensus pattern (91 bp):
AAACACTTTTAAGACATATTTAATAAAACTAATGCGAACTAAATTTAATATGTGGTTTATTAATA
AACTAATTAATGAACTTATTAAATAA
Found at i:83797283 original size:23 final size:23
Alignment explanation
Indices: 83797243--83797546 Score: 340
Period size: 23 Copynumber: 13.2 Consensus size: 23
83797233 GGAATCTATA
*
83797243 GGCTACAATAT-AGTGGTAGCTTT
1 GGCTACAAT-TCAGTGGTAGCTTC
* *
83797266 GGCTAC-ATCTCAGGGGTAGCTTT
1 GGCTACAAT-TCAGTGGTAGCTTC
83797289 GGCTACAATAT-AGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
83797312 GGCTACAATTTAGTGGTAGCTTC
1 GGCTACAATTCAGTGGTAGCTTC
83797335 GGCTACAATAT-AGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
83797358 GGCTATAATAT-AGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
83797381 GGTTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
83797404 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATTCAGTGGTAGCTTC
*
83797427 GGCTACAATAT-AATGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
83797450 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
83797473 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-TCAGTGGTAGCTTC
*
83797496 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATTCAGTGGTAGCTTC
* * *
83797519 GGCTAC-GTTACAGTGATAGCTTT
1 GGCTACAATT-CAGTGGTAGCTTC
83797542 GGCTA
1 GGCTA
83797547 TATTATAGTG
Statistics
Matches: 251, Mismatches: 20, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
22 11 0.04
23 232 0.92
24 8 0.03
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (23 bp):
GGCTACAATTCAGTGGTAGCTTC
Found at i:83797310 original size:46 final size:46
Alignment explanation
Indices: 83797243--83797524 Score: 385
Period size: 46 Copynumber: 6.1 Consensus size: 46
83797233 GGAATCTATA
* * *
83797243 GGCTACAATATAGTGGTAGCTTTGGCTAC-ATCTCAGGGGTAGCTTT
1 GGCTACAATATAGTGGTAGCTTCGGCTACAAT-TCAGTGGTAGCTTC
*
83797289 GGCTACAATATAGTGGTAGCTTCGGCTACAATTTAGTGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
*
83797335 GGCTACAATATAGTGGTAGCTTCGGCTATAATAT-AGTGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAAT-TCAGTGGTAGCTTC
* * *
83797381 GGTTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTC
1 GGCTACAATAT-AGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
*
83797427 GGCTACAATATAATGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAATATAGTGGTAGCTTCGGCTACAAT-TCAGTGGTAGCTTC
* *
83797473 GGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTC
1 GGCTACAATAT-AGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
83797519 GGCTAC
1 GGCTAC
83797525 GTTACAGTGA
Statistics
Matches: 212, Mismatches: 16, Indels: 16
0.87 0.07 0.07
Matches are distributed among these distances:
45 8 0.04
46 196 0.92
47 8 0.04
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
GGCTACAATATAGTGGTAGCTTCGGCTACAATTCAGTGGTAGCTTC
Found at i:83797354 original size:69 final size:69
Alignment explanation
Indices: 83797254--83797546 Score: 405
Period size: 69 Copynumber: 4.2 Consensus size: 69
83797244 GCTACAATAT
* * * *
83797254 AGTGGTAGCTTTGGCTACATCTCAGGGGTAGCTTTGGCTACAATATAGTGGTAGCTTCGGCTACA
1 AGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCGGCTAC-
*
83797319 AT-TT
65 ATCTC
* *
83797323 AGTGGTAGCTTCGGCTACAATAT-AGTGGTAGCTTCGGCTATAATATAGTGGTAGCTTCGGTTAC
1 AGTGGTAGCTTCGGCTAC-ATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCGGCTAC
83797387 ATCTC
65 ATCTC
*
83797392 AGTGGTAGCTTCGGCTACA-ATACAGTGGTAGCTTCGGCTACAATATAATGGTAGCTTCGGCTAC
1 AGTGGTAGCTTCGGCTACATAT-CAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCGGCTAC
83797456 ATCTC
65 ATCTC
* * *
83797461 AGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAGCTTCGGCTACG
1 AGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCGGCTACA
83797526 T-TAC
66 TCT-C
* *
83797530 AGTGATAGCTTTGGCTA
1 AGTGGTAGCTTCGGCTA
83797547 TATTATAGTG
Statistics
Matches: 202, Mismatches: 16, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
67 2 0.01
68 4 0.02
69 192 0.95
70 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (69 bp):
AGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAATATAGTGGTAGCTTCGGCTACA
TCTC
Found at i:83801687 original size:69 final size:69
Alignment explanation
Indices: 83801576--83801879 Score: 441
Period size: 69 Copynumber: 4.4 Consensus size: 69
83801566 GGAATCTATA
* *
83801576 GGCTACAATATAGTGGTAGCTTTGGCTACATCTCAGTGGTAGCTTCGGCTACAATATAGTGGTAG
1 GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
83801641 CTTC
66 CTTC
*
83801645 GGCTACAATATAGTGGTAGCTTCGGTTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
1 GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
83801710 CTTC
66 CTTC
* * *
83801714 GACTATAATATAATGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
1 GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
*
83801779 CTTT
66 CTTC
* * *
83801783 GGCTAC-ATCTCAGTGGTAGCTTCGGCTACAAT-ACAGTGGTAGCTTTGGCTACAATACAGTGGT
1 GGCTACAATAT-AGTGGTAGCTTCGGCTAC-ATCTCAGTGGTAGCTTCGGCTACAATACAGTGGT
*
83801846 AGCTTT
64 AGCTTC
** * *
83801852 GGCTACGTTACAGTGATAGCTTCGGCTA
1 GGCTACAATATAGTGGTAGCTTCGGCTA
83801880 TATTATAGTG
Statistics
Matches: 214, Mismatches: 18, Indels: 6
0.90 0.08 0.03
Matches are distributed among these distances:
68 3 0.01
69 208 0.97
70 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (69 bp):
GGCTACAATATAGTGGTAGCTTCGGCTACATCTCAGTGGTAGCTTCGGCTACAATACAGTGGTAG
CTTC
Found at i:83801889 original size:23 final size:23
Alignment explanation
Indices: 83801576--83801879 Score: 373
Period size: 23 Copynumber: 13.2 Consensus size: 23
83801566 GGAATCTATA
* *
83801576 GGCTACAATATAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
*
83801599 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
83801622 GGCTACAATATAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
*
83801645 GGCTACAATATAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* *
83801668 GGTTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
83801691 GGCTACAATACAGTGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
* * * *
83801714 GACTATAATATAATGGTAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
*
83801737 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
83801760 GGCTACAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
*
83801783 GGCTAC-ATCTCAGTGGTAGCTTC
1 GGCTACAAT-ACAGTGGTAGCTTC
*
83801806 GGCTACAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
*
83801829 GGCTACAATACAGTGGTAGCTTT
1 GGCTACAATACAGTGGTAGCTTC
** *
83801852 GGCTACGTTACAGTGATAGCTTC
1 GGCTACAATACAGTGGTAGCTTC
83801875 GGCTA
1 GGCTA
83801880 TATTATAGTG
Statistics
Matches: 244, Mismatches: 29, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
22 8 0.03
23 228 0.93
24 8 0.03
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (23 bp):
GGCTACAATACAGTGGTAGCTTC
Found at i:83808074 original size:6 final size:5
Alignment explanation
Indices: 83808045--83808152 Score: 50
Period size: 6 Copynumber: 20.8 Consensus size: 5
83808035 TATGTCTTTC
* *
83808045 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
83808093 AAAAAT AAAAT -AAA- AAAAT AAAAAT AAAAAT AAGAAT -AAAT AATAA-
1 -AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AA-AAT AAAAT AA-AAT
83808139 ATAAAT -AAAT AAAA
1 A-AAAT AAAAT AAAA
83808153 AGGAGGATTC
Statistics
Matches: 82, Mismatches: 6, Indels: 30
0.69 0.05 0.25
Matches are distributed among these distances:
3 3 0.04
4 13 0.16
5 23 0.28
6 43 0.52
ACGTcount: A:0.77, C:0.01, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:83808080 original size:12 final size:12
Alignment explanation
Indices: 83808065--83808153 Score: 90
Period size: 12 Copynumber: 7.2 Consensus size: 12
83808055 AATAAAATTG
*
83808065 AAATGAAAATAA
1 AAATAAAAATAA
* *
83808077 AAATCAAAAGAA
1 AAATAAAAATAA
83808089 AAATAAAAATAA
1 AAATAAAAATAA
*
83808101 AATAAAAAAATAA
1 AA-ATAAAAATAA
83808114 AAATAAAAATAA
1 AAATAAAAATAA
*
83808126 GAATAAATAATAA
1 AAATAAA-AATAA
*
83808139 ATAA-ATAAATAA
1 A-AATAAAAATAA
83808151 AAA
1 AAA
83808154 GGAGGATTCA
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
11 2 0.03
12 43 0.66
13 18 0.28
14 2 0.03
ACGTcount: A:0.79, C:0.01, G:0.03, T:0.17
Consensus pattern (12 bp):
AAATAAAAATAA
Found at i:83808111 original size:37 final size:37
Alignment explanation
Indices: 83808070--83808153 Score: 116
Period size: 37 Copynumber: 2.3 Consensus size: 37
83808060 AATTGAAATG
*
83808070 AAAATAAAAATCAAAAGAAAAATAAA-AATAAAATAAA
1 AAAATAAAAATAAAAAGAAAAATAAATAAT-AAATAAA
* *
83808107 AAAATAAAAATAAAAATAAGAATAAATAATAAATAAA
1 AAAATAAAAATAAAAAGAAAAATAAATAATAAATAAA
*
83808144 TAAATAAAAA
1 AAAATAAAAA
83808154 GGAGGATTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
37 39 0.93
38 3 0.07
ACGTcount: A:0.80, C:0.01, G:0.02, T:0.17
Consensus pattern (37 bp):
AAAATAAAAATAAAAAGAAAAATAAATAATAAATAAA
Found at i:83808148 original size:25 final size:22
Alignment explanation
Indices: 83808087--83808153 Score: 72
Period size: 19 Copynumber: 3.1 Consensus size: 22
83808077 AAATCAAAAG
83808087 AAAAATAAAAAT--A-AAATAA
1 AAAAATAAAAATAAATAAATAA
83808106 AAAAATAAAAAT-AA-AAATAA
1 AAAAATAAAAATAAATAAATAA
83808126 GAATAAATAATAAATAAATAAATAA
1 -AA-AAATAA-AAATAAATAAATAA
83808151 AAA
1 AAA
83808154 GGAGGATTCA
Statistics
Matches: 42, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
19 12 0.29
20 7 0.17
21 2 0.05
22 6 0.14
23 5 0.12
24 4 0.10
25 6 0.14
ACGTcount: A:0.81, C:0.00, G:0.01, T:0.18
Consensus pattern (22 bp):
AAAAATAAAAATAAATAAATAA
Found at i:83811690 original size:40 final size:40
Alignment explanation
Indices: 83811645--83811827 Score: 312
Period size: 40 Copynumber: 4.6 Consensus size: 40
83811635 CAAGCTCAAT
* * * * *
83811645 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
83811685 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83811725 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83811765 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83811805 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
83811828 GTATTCAAAT
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:83825628 original size:40 final size:40
Alignment explanation
Indices: 83825396--83825621 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
83825386 TTGAATGATG
* * * *
83825396 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
83825436 TCCGGACTAAGAT-CCGAAGGCATTTTTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83825476 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83825516 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
83825556 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
83825597 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
83825622 AACGAGTAGC
Statistics
Matches: 171, Mismatches: 11, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.01
40 161 0.94
41 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:83825628 original size:120 final size:120
Alignment explanation
Indices: 83825396--83825654 Score: 296
Period size: 120 Copynumber: 2.2 Consensus size: 120
83825386 TTGAATGATG
* *
83825396 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
83825461 TTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAA
66 GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAA
* * * **
83825516 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
83825579 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATA
64 TTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAA
* *
83825636 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
83825655 TACGTGATTT
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
119 18 0.15
120 92 0.77
121 9 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (120 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAA
Found at i:83827448 original size:22 final size:22
Alignment explanation
Indices: 83827423--83827466 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
83827413 AATTATTAAC
*
83827423 ATAATGAATTTTAATTAATTTT
1 ATAATAAATTTTAATTAATTTT
* *
83827445 ATAATAAATTTTGATTATTTTT
1 ATAATAAATTTTAATTAATTTT
83827467 TATTATTTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATAAATTTTAATTAATTTT
Found at i:83839928 original size:29 final size:28
Alignment explanation
Indices: 83839892--83839964 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 28
83839882 TCATGAGATT
*
83839892 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGAGTTTAAA--GTACA
83839922 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
83839949 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
83839965 CGGCTGATTA
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 5 0.12
29 35 0.88
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:83840193 original size:173 final size:174
Alignment explanation
Indices: 83839922--83840248 Score: 575
Period size: 173 Copynumber: 1.9 Consensus size: 174
83839912 AAATTGTACA
83839922 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGCTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGCTGATTATTAAGCACTATG
* * * *
83839987 TGTGCGAACCCAATATATATTTTCTAAAAATTATTTACAT-TAAGGTGCGGCTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTAAAAATTATTTACATGAAAGGTGCGACTTTACCAAGTCAA
83840051 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
83840095 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGCTGATTATTAAGCACTATG
* *
83840160 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAAGGTGCGACTTTACCAAGTCAA
66 TGTGCGAACCCAATATATATTTTCTAAAAATTATTTACATGAAAGGTGCGACTTTACCAAGTCAA
83840225 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
83840249 ACCTTGAGTT
Statistics
Matches: 145, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
173 101 0.70
174 44 0.30
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGCTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTAAAAATTATTTACATGAAAGGTGCGACTTTACCAAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:83847732 original size:29 final size:28
Alignment explanation
Indices: 83847696--83847773 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
83847686 TCATGAGATT
83847696 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
83847726 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
83847753 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
83847774 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:83847991 original size:174 final size:174
Alignment explanation
Indices: 83847726--83848227 Score: 914
Period size: 174 Copynumber: 2.9 Consensus size: 174
83847716 AAATTGTACA
*
83847726 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
83847791 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAAGGTGCGACTTTACCGAGTCGA
83847856 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * *
83847900 GCACTAAGTGTGTGAGTTTAAAGTGCATGGTACTAAGTGTGCGCGGTTGATTATTGAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
83847965 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAATGGTGCGGCTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAAGGTGCGACTTTACCGAGTCGA
83848030 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
83848074 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
83848139 TGTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAAGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAAGGTGCGACTTTACCGAGTCGA
83848204 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
83848228 ACCTTGAGTT
Statistics
Matches: 314, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 314 1.00
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAAGGTGCGACTTTACCGAGTCGA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:83852243 original size:31 final size:31
Alignment explanation
Indices: 83852197--83852256 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
83852187 TTCATATTTC
83852197 ATATTGCATAACACTGGGCCAAAGCCTTTTT
1 ATATTGCATAACACTGGGCCAAAGCCTTTTT
* * *
83852228 ATATTTCATATCACTGGGCCGAAGCCTTT
1 ATATTGCATAACACTGGGCCAAAGCCTTT
83852257 CGTTTAACGG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (31 bp):
ATATTGCATAACACTGGGCCAAAGCCTTTTT
Found at i:83852547 original size:26 final size:26
Alignment explanation
Indices: 83852467--83852599 Score: 157
Period size: 26 Copynumber: 5.3 Consensus size: 26
83852457 CTGGAGGCCT
* * *
83852467 AGCCTTTTTTAAT-AACTTGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
* * *
83852491 ATCCCTTTT-GATAAACTGGGGTA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
83852515 AGCCCTTTTCAATTAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
83852541 AGCCCTTTTCAGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
*
83852567 AGCCCTTTTCAAGAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
83852593 AGCCCTT
1 AGCCCTT
83852600 CTACACTTCC
Statistics
Matches: 93, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
23 2 0.02
24 24 0.26
25 11 0.12
26 56 0.60
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:83852575 original size:52 final size:50
Alignment explanation
Indices: 83852444--83852599 Score: 163
Period size: 52 Copynumber: 3.1 Consensus size: 50
83852434 AGCATAGCTG
** * * * *
83852444 CTTTATCATATAACTGGAGGCCTAGCCTTTTTTAA-TAACTTGGGCA-AATCC
1 CTTT-TCATA-AACTGG-GGCAAAGCCCTTTTCAAGTAACTGGGGCATAAGCC
* * *
83852495 CTTTTGATAAACTGGGGTAAAGCCCTTTTCAATTAACTGGGGCATAAGCC
1 CTTTTCATAAACTGGGGCAAAGCCCTTTTCAAGTAACTGGGGCATAAGCC
*
83852545 CTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAAGAAACTGGGGCATAAGCC
1 CTTTTCA-TAAACTGGGGCA-AAGCCCTTTTCAAGTAACTGGGGCATAAGCC
83852597 CTT
1 CTT
83852600 CTACACTTCC
Statistics
Matches: 89, Mismatches: 12, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
48 12 0.13
49 16 0.18
50 14 0.16
51 15 0.17
52 32 0.36
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (50 bp):
CTTTTCATAAACTGGGGCAAAGCCCTTTTCAAGTAACTGGGGCATAAGCC
Found at i:83852682 original size:11 final size:11
Alignment explanation
Indices: 83852651--83852726 Score: 56
Period size: 11 Copynumber: 7.5 Consensus size: 11
83852641 TTATGAATAC
83852651 ATCATGTGCAT
1 ATCATGTGCAT
* *
83852662 TTCA--TACAT
1 ATCATGTGCAT
83852671 ATCATGTGCAT
1 ATCATGTGCAT
*
83852682 ATCA--TACAT
1 ATCATGTGCAT
83852691 ATCATGTGCAT
1 ATCATGTGCAT
* * *
83852702 -T-TTATACAT
1 ATCATGTGCAT
83852711 ATCATGTGCAT
1 ATCATGTGCAT
83852722 ATCAT
1 ATCAT
83852727 ATCAATCATA
Statistics
Matches: 47, Mismatches: 12, Indels: 12
0.66 0.17 0.17
Matches are distributed among these distances:
9 20 0.43
10 2 0.04
11 25 0.53
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:83852696 original size:40 final size:40
Alignment explanation
Indices: 83852651--83852735 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
83852641 TTATGAATAC
83852651 ATCATGTGCATTTCATACATATCATGTGCATATCATA-CA
1 ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
*
83852690 TATCATGTGCATTTTATACATATCATGTGCATATCATATCA
1 -ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
83852731 ATCAT
1 ATCAT
83852736 ATATATCATA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
40 41 0.95
41 2 0.05
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.39
Consensus pattern (40 bp):
ATCATGTGCATTTCATACATATCATGTGCATATCATATCA
Found at i:83852735 original size:20 final size:20
Alignment explanation
Indices: 83852651--83852727 Score: 127
Period size: 20 Copynumber: 3.9 Consensus size: 20
83852641 TTATGAATAC
*
83852651 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
83852671 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
83852691 ATCATGTGCATTTTATACAT
1 ATCATGTGCATATCATACAT
83852711 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
83852728 TCAATCATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:83852746 original size:9 final size:10
Alignment explanation
Indices: 83852663--83852747 Score: 63
Period size: 9 Copynumber: 8.7 Consensus size: 10
83852653 CATGTGCATT
83852663 TCATA-CATA
1 TCATATCATA
*
83852672 TCATGTGCATA
1 TCATAT-CATA
83852683 TCATA-CATA
1 TCATATCATA
* *
83852692 TCATGTGCATT
1 TCATAT-CATA
*
83852703 TTATA-CATA
1 TCATATCATA
*
83852712 TCATGTGCATA
1 TCATAT-CATA
83852723 TCATATCA-A
1 TCATATCATA
83852732 TCATAT-ATA
1 TCATATCATA
83852741 TCATATC
1 TCATATC
83852748 CCACGTATCA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
8 1 0.02
9 32 0.55
10 2 0.03
11 23 0.40
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (10 bp):
TCATATCATA
Found at i:83856896 original size:22 final size:22
Alignment explanation
Indices: 83856852--83856896 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
83856842 TGCAGCATTG
* *
83856852 TTTTAAGTTCTTCTATCTTCTC
1 TTTTAAGTTCTTCGATCTACTC
83856874 TTTTAA-TTCTTCGATTCTACTC
1 TTTTAAGTTCTTCGA-TCTACTC
83856896 T
1 T
83856897 GACTAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.16, C:0.22, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTTAAGTTCTTCGATCTACTC
Found at i:83873013 original size:39 final size:40
Alignment explanation
Indices: 83872859--83873026 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
83872849 GCTCCTCGTT
* *
83872859 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
83872899 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
83872939 CAAATGCCTTC-GG-CTTAG-CCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
*
83872976 CAAATGCCTTCGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
83873015 CAAATGCCTTCG
1 CAAATGCCTTCG
83873027 AATCTTAGTC
Statistics
Matches: 117, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
37 28 0.24
38 11 0.09
39 33 0.28
40 43 0.37
41 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:83887868 original size:13 final size:13
Alignment explanation
Indices: 83887849--83887887 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
83887839 CAAAAGAGAG
83887849 TGAAAAGAAAATGA
1 TGAAAAGAAAA-GA
83887863 -GAAAAGAAAAGA
1 TGAAAAGAAAAGA
83887875 TGAAAAAGAAAAG
1 TG-AAAAGAAAAG
83887888 GAAAGTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 2 0.09
13 11 0.48
14 10 0.43
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (13 bp):
TGAAAAGAAAAGA
Found at i:83887883 original size:14 final size:15
Alignment explanation
Indices: 83887850--83887887 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
83887840 AAAAGAGAGT
83887850 GAAAAG-AAA-ATGA
1 GAAAAGAAAAGATGA
83887863 GAAAAGAAAAGATGA
1 GAAAAGAAAAGATGA
83887878 -AAAAGAAAAG
1 GAAAAGAAAAG
83887888 GAAAGTGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 6 0.26
14 13 0.57
15 4 0.17
ACGTcount: A:0.71, C:0.00, G:0.24, T:0.05
Consensus pattern (15 bp):
GAAAAGAAAAGATGA
Found at i:83889476 original size:30 final size:30
Alignment explanation
Indices: 83889442--83889538 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
83889432 AGCTCACTCC
*
83889442 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * *
83889472 TAGCTCAACTTTAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
83889502 CAGCTCAACTTTAGCTCACGAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
83889532 TAGCTCA
1 TAGCTCA
83889539 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 14, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
30 47 0.90
31 5 0.10
ACGTcount: A:0.28, C:0.28, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:83897048 original size:40 final size:40
Alignment explanation
Indices: 83896988--83897170 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
83896978 CAAGCTCAAT
* * * * *
83896988 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
83897028 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83897068 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
83897108 TGCCTTCGGGTCTTAGCCCGTATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83897148 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
83897171 GTATTCAAAT
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:83905359 original size:40 final size:40
Alignment explanation
Indices: 83905314--83905496 Score: 312
Period size: 40 Copynumber: 4.6 Consensus size: 40
83905304 CAAGCTCAAT
* * * * *
83905314 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
83905354 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83905394 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83905434 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83905474 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
83905497 GTATTCAAAT
Statistics
Matches: 136, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 136 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:83913706 original size:40 final size:40
Alignment explanation
Indices: 83913661--83913883 Score: 365
Period size: 40 Copynumber: 5.6 Consensus size: 40
83913651 CAAGCTCAAT
* * * * *
83913661 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
*
83913701 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
* * *
83913741 TGCCTTCGGGTCTTAGCCCGGATATATTAACTTGCATAAT
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83913781 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83913821 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
83913861 TGCCTTCGGGTCTTAGCCCGGAT
1 TGCCTTCGGGTCTTAGCCCGGAT
83913884 GTATTCAAAT
Statistics
Matches: 172, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 172 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
Found at i:83919164 original size:13 final size:13
Alignment explanation
Indices: 83919142--83919174 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
83919132 AAGGGTTTGT
83919142 TTAT-TAAACTAA
1 TTATCTAAACTAA
83919154 TTATCTAAACTAA
1 TTATCTAAACTAA
*
83919167 TTAACTAA
1 TTATCTAA
83919175 TTAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:83922444 original size:25 final size:25
Alignment explanation
Indices: 83922416--83922468 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
83922406 AAACTCCTCC
*
83922416 GAGCTG-AAATACGGTAAGCTCATAT
1 GAGCTGCAAAT-CAGTAAGCTCATAT
83922441 GAGCTGCAAATCAGTAAGCTCATAT
1 GAGCTGCAAATCAGTAAGCTCATAT
83922466 GAG
1 GAG
83922469 TTGTGGTGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 22 0.85
26 4 0.15
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.23
Consensus pattern (25 bp):
GAGCTGCAAATCAGTAAGCTCATAT
Found at i:83922897 original size:26 final size:26
Alignment explanation
Indices: 83922868--83922923 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
83922858 TGGTACAAAT
83922868 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
83922894 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
83922920 TGAT
1 TGAT
83922924 GGGCATTTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.07, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:83929003 original size:41 final size:42
Alignment explanation
Indices: 83928958--83929039 Score: 98
Period size: 41 Copynumber: 2.0 Consensus size: 42
83928948 TTCATAATTC
*
83928958 TTAAATAA-TTTGT-ACAAATTTTAAATAATT-TTTAAATTTTG
1 TTAAA-AATTTTGTAACAAAATTT-AATAATTATTTAAATTTTG
* *
83928999 TTAAAAATTTTGTAATAAAATTTAATAATTATTTACATTTT
1 TTAAAAATTTTGTAACAAAATTTAATAATTATTTAAATTTT
83929040 TGATATTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
40 2 0.06
41 17 0.49
42 16 0.46
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (42 bp):
TTAAAAATTTTGTAACAAAATTTAATAATTATTTAAATTTTG
Found at i:83929097 original size:11 final size:11
Alignment explanation
Indices: 83929081--83929105 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
83929071 GTTATTTAAA
83929081 TTTTTTATGAT
1 TTTTTTATGAT
83929092 TTTTTTATGAT
1 TTTTTTATGAT
83929103 TTT
1 TTT
83929106 AAATAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTATGAT
Found at i:83929145 original size:30 final size:29
Alignment explanation
Indices: 83929101--83929174 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 29
83929091 TTTTTTTATG
83929101 ATTTTAAATAATTTT-AAATACCCTTTTACAA
1 ATTTT-AAT-ATTTTAAAATA-CCTTTTACAA
**
83929132 ATTTTATATATTTTAAAATATTTTTTACAA
1 ATTTTA-ATATTTTAAAATACCTTTTACAA
*
83929162 TTTTTAATATTTT
1 ATTTTAATATTTT
83929175 TGTATCTAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
29 7 0.18
30 19 0.50
31 12 0.32
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (29 bp):
ATTTTAATATTTTAAAATACCTTTTACAA
Found at i:83929636 original size:24 final size:26
Alignment explanation
Indices: 83929589--83929647 Score: 77
Period size: 24 Copynumber: 2.3 Consensus size: 26
83929579 TCGATTCGAG
*
83929589 TCGAATCAAGTAAACAAAATTTCAAA
1 TCGAATTAAGTAAACAAAATTTCAAA
*
83929615 TCGAATTAAGTAAA-AAAA-TTCAAG
1 TCGAATTAAGTAAACAAAATTTCAAA
*
83929639 TCGAGTTAA
1 TCGAATTAA
83929648 CGAATCATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 13 0.43
25 4 0.13
26 13 0.43
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.25
Consensus pattern (26 bp):
TCGAATTAAGTAAACAAAATTTCAAA
Found at i:83943821 original size:143 final size:143
Alignment explanation
Indices: 83943622--83943941 Score: 387
Period size: 143 Copynumber: 2.3 Consensus size: 143
83943612 AATTTGAACC
* * * * ** * **
83943622 TACTCCACTGCAACTTCAGGCAGATGAGGTTTG-TGT-ATTTGTGGCTTCAATCTGTTCCGTTGC
1 TACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGC
* * * * *
83943685 GACATT-AGGGAAATGAGATTCGCTGTCTTTATTCTG-TTCTGCTGCAACTTCAGGGAGATAAGA
66 AAC-TTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTTC-GCTGCAACTTCAGGGAGATAAGA
* *
83943748 CTTGTGGCTTCAATT
129 CTCGTGGCTTCAATA
* *
83943763 TGCTCTACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGC
1 TACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGC
*
83943828 AACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTTCGTTGCAACTTCAGGGAGATAAGACT
66 AACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTTCGCTGCAACTTCAGGGAGATAAGACT
83943893 CGTGGCTTCAATA
131 CGTGGCTTCAATA
* * * *
83943906 TACTCCATTGTAACTTTAGGGAGATAAGATTTGCCA
1 TACTCCACTGCAACTTCAGGGAGATAAGATTCGCCA
83943942 CAATAACTTA
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
141 27 0.18
142 3 0.02
143 117 0.78
144 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (143 bp):
TACTCCACTGCAACTTCAGGGAGATAAGATTCGCCATAATTTGTAGCTTCAATCTGTTCCACTGC
AACTTCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTTCGCTGCAACTTCAGGGAGATAAGACT
CGTGGCTTCAATA
Found at i:83952924 original size:31 final size:30
Alignment explanation
Indices: 83952858--83952927 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 30
83952848 ATTTTATCAT
**
83952858 AAATTATATATGTAATAAATTTTAAAAACA
1 AAATTATATATCAAATAAATTTTAAAAACA
* *
83952888 CAATTATATATACAAATAGATTTTAAAAA-A
1 AAATTATATAT-CAAATAAATTTTAAAAACA
83952918 GAAATTATAT
1 -AAATTATAT
83952928 GTATAAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
30 11 0.33
31 22 0.67
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (30 bp):
AAATTATATATCAAATAAATTTTAAAAACA
Found at i:83955507 original size:24 final size:24
Alignment explanation
Indices: 83955471--83955521 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
83955461 GTTAGGTTCT
* * *
83955471 CGGTGGTGCTCCGACGATCCATCC
1 CGGTGATGATCCGACGAGCCATCC
**
83955495 CGGTGATGATCCGGTGAGCCATCC
1 CGGTGATGATCCGACGAGCCATCC
83955519 CGG
1 CGG
83955522 GATACACAAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.33, G:0.33, T:0.20
Consensus pattern (24 bp):
CGGTGATGATCCGACGAGCCATCC
Found at i:83955646 original size:58 final size:59
Alignment explanation
Indices: 83955555--83955675 Score: 192
Period size: 58 Copynumber: 2.1 Consensus size: 59
83955545 CCCTCCCCAA
*
83955555 TCCCAAAAGGTAGAATTCGGATACCGTTACATGT-TCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCT-GGTACCCAACAATGAATGAATCG
* *
83955614 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCTGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCTGGTACCCAACAATGAATGAATCG
83955672 TCCC
1 TCCC
83955676 TGTCCCTCCA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
58 53 0.91
59 5 0.09
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCTGGTACCCAACAATGAATGAATCG
Found at i:83955971 original size:21 final size:22
Alignment explanation
Indices: 83955945--83955986 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
83955935 TCGCCTGGTA
83955945 GCCTGGTAGC-GCCTGGTAGTC
1 GCCTGGTAGCAGCCTGGTAGTC
*
83955966 GCCTGGTAGCAGTCTGGTAGT
1 GCCTGGTAGCAGCCTGGTAGT
83955987 AAGCAAGCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.12, C:0.24, G:0.38, T:0.26
Consensus pattern (22 bp):
GCCTGGTAGCAGCCTGGTAGTC
Found at i:83955982 original size:11 final size:10
Alignment explanation
Indices: 83955936--83955985 Score: 59
Period size: 11 Copynumber: 5.0 Consensus size: 10
83955926 ACATGAATGT
83955936 CGCCTGGTA-
1 CGCCTGGTAG
83955945 -GCCTGGTAG
1 CGCCTGGTAG
83955954 CGCCTGGTAG
1 CGCCTGGTAG
83955964 TCGCCTGGTAG
1 -CGCCTGGTAG
*
83955975 CAGTCTGGTAG
1 C-GCCTGGTAG
83955986 TAAGCAAGCG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
8 8 0.22
10 10 0.28
11 18 0.50
ACGTcount: A:0.12, C:0.26, G:0.38, T:0.24
Consensus pattern (10 bp):
CGCCTGGTAG
Found at i:83959435 original size:58 final size:59
Alignment explanation
Indices: 83959344--83959464 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 59
83959334 CCCTCCCCAA
* * *
83959344 TCCCAAAAGGTAGAATTCAGATATCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* * * *
83959403 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCTGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
83959461 TCCC
1 TCCC
83959465 TGTCCCTCCC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:83965581 original size:23 final size:24
Alignment explanation
Indices: 83965512--83965584 Score: 103
Period size: 24 Copynumber: 3.1 Consensus size: 24
83965502 GTTAGGTTTT
*
83965512 CGGCGGTGCTCCGGCGATCCATCC
1 CGGCGGTGCTCCGGCGAGCCATCC
* *
83965536 CGGTGGTGCTCCGGTGAGCCATCC
1 CGGCGGTGCTCCGGCGAGCCATCC
*
83965560 CGGCGGTGCT-CGACGAGCCATCC
1 CGGCGGTGCTCCGGCGAGCCATCC
83965583 CG
1 CG
83965585 AAATATCGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
23 13 0.30
24 30 0.70
ACGTcount: A:0.10, C:0.38, G:0.36, T:0.16
Consensus pattern (24 bp):
CGGCGGTGCTCCGGCGAGCCATCC
Found at i:83965634 original size:13 final size:13
Alignment explanation
Indices: 83965616--83965640 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
83965606 AAGTCGTCCC
83965616 GGTCCCTCCCCTA
1 GGTCCCTCCCCTA
83965629 GGTCCCTCCCCT
1 GGTCCCTCCCCT
83965641 TTTGAATCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.56, G:0.16, T:0.24
Consensus pattern (13 bp):
GGTCCCTCCCCTA
Found at i:83965865 original size:42 final size:42
Alignment explanation
Indices: 83965819--83966699 Score: 922
Period size: 42 Copynumber: 20.9 Consensus size: 42
83965809 TAGGATGTTT
* *
83965819 GTCGTACGGGAGCCTCGGGCACCATCGGCACCTAGCCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * **
83965861 GTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
83965903 GAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGACCC-TG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCCTTG
* * ** *
83965946 GTCGCGTGGGAGCCTC-GATACCATTGGCAACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
83965988 GTCGTGCGAGAGCCTCGGGCACCATCGGTACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * *
83966030 GTCGTGTGAGAGCCACGGGCACCATCGGAACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
83966072 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* ** * * *
83966114 GTTGTGTAGGAGCTTCGGCCACCATCGGCAACTTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* *
83966157 GTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* **
83966199 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
83966241 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
83966284 GTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
83966325 GTTGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
*
83966367 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
83966410 GTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGG-CCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
* * * * * **
83966452 ATCGTGCGAGAAG-CTCGGGTACCATCGTCACCTTGGTGCTTG
1 GTCGTGCG-GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* ** * * *
83966494 GAT-GTGTGGGAGCCTCGAACACCATCGGTAACCTCGGCCATTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTG
* *
83966537 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
* ** * * **
83966580 GAT-GTGCGGGAGCCTCGAGCAGTATTGGCACCTTGGTACTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * * **
83966622 GAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTG
1 G-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* *
83966664 G-AGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 GTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
83966700 ACGTTCGATG
Statistics
Matches: 712, Mismatches: 103, Indels: 48
0.83 0.12 0.06
Matches are distributed among these distances:
41 63 0.09
42 442 0.62
43 205 0.29
44 2 0.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (42 bp):
GTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
Found at i:83966172 original size:211 final size:210
Alignment explanation
Indices: 83965819--83966699 Score: 897
Period size: 211 Copynumber: 4.2 Consensus size: 210
83965809 TAGGATGTTT
* * * *
83965819 GTCGTACGGGAGCCTCGGGCACCATCGGCACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGCACC
1 GTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACC
* * ** * * * *
83965884 ACCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGACCC-TGGT
65 ATCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-CCCTTGGT
* * ** * *
83965948 CGCGTGGGAGCCTC-GATACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCA
129 CGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
*
83966012 TCGGTACCTAGGCCCTTG
194 TCGGAACCTAGG-CCTTG
* *
83966030 GTCGTGTGAGAGCCACGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACC
1 GTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACC
* ** * *
83966095 ATCGGCACCTAGGCCCCTGGTTGTGTAGGAGCTTCGGCCACCATCGGCAACTTAGGCCCTTGGTC
65 ATCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
* *
83966160 GTACGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
130 GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * *
83966224 CGGCACCTTGGTGCTTG
195 CGGAACCTAGG-CCTTG
* * *
83966241 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGAC
1 G-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCAC
83966305 CATCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGA
64 CATCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGG-
* *
83966369 T-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACC
128 TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACC
83966433 ATCGGCAACCTAGGCCTTG
193 ATCGG-AACCTAGGCCTTG
* * ** * ** * *
83966452 ATCGTGCGAGAAG-CTCGGGTACCATCGTCACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGAACA
1 GTCGTGCGAG-AGCCTCGGGCACCATCGGAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCA
* * * * * * *
83966515 CCATCGGTAACCTCGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTT
63 CCATCGG-CACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-CCCTT
* ** * * ** *
83966579 GGAT-GTGCGGGAGCCTCGAGCAGTATTGGC-ACCTTGGTACTTGGAT-GTGCGGGAGCCTCGAG
126 GG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGG
* * * * *
83966641 CAGCATTGGCACCTTGGTGCTTG
189 CACCATCGGAACCTAGG-CCTTG
* * *
83966664 G-AGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
1 GTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGG
83966700 ACGTTCGATG
Statistics
Matches: 562, Mismatches: 90, Indels: 35
0.82 0.13 0.05
Matches are distributed among these distances:
210 68 0.12
211 329 0.59
212 134 0.24
213 31 0.06
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (210 bp):
GTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCA
TCGGCACCTAGGCCCTTGGTTGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTCG
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGAACCTAGGCCTTG
Found at i:83966260 original size:253 final size:254
Alignment explanation
Indices: 83965819--83966699 Score: 1016
Period size: 253 Copynumber: 3.5 Consensus size: 254
83965809 TAGGATGTTT
* * *
83965819 GTCGTACGGGAGCCTCGGGCACCATCGGCACCTA-GCCCCTTGGTCGTGCGGGAGCCTCGGGCAC
1 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCC-TGGTTGTGCGGGAGCCTCGGGCAC
* * ** * *
83965883 CACCGGCACCTT-GGTGCTTGGAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGACCC-T
65 CATCGGCAACTTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTT
* * * * * ** *
83965945 GGTCGCGTGGGAGCCTC-GATACCATTGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGC
128 GGTCGTGCGGGAGCCTCGGGTACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGC
* * *
83966008 ACCATCGGTACCTAGGCCCTTGGTCGTGTGAGAGCCACGGGCACCATCGGAACCTAGGCCCTTG
191 ACCATCGGTACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
** * *
83966072 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTTGTGTAGGAGCTTCGGCCACC
1 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACC
* *
83966137 ATCGGCAACTTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGT
66 ATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
*
83966201 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCAT
131 CGTGCGGGAGCCTCGGGTACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCAT
*
83966266 CGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTAGGCCCTTG
196 CGG-TACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * *
83966325 GTTGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACC
1 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACC
* * * *
83966390 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGG-CCTTGAT
66 ATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
* * * **
83966454 CGTGCGAGAAG-CTCGGGTACCATCGTCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAACACCA
131 CGTGCG-GGAGCCTCGGGTACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCA
* * * * *
83966518 TCGGTAACCTCGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTG
195 TCGGT-ACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTG
** * * ** * * *
83966580 GAT-GTGCGGGAGCCTCGAG-CAGTATTGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCA
1 G-TCGTGCGGGAGCCTCG-GCCACCATCGGCACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCA
* * * ** * *
83966643 GCATTGGCACCTT-GGTGCTTGG-AGTGCGGGAGCCTCGGACACCATCGGCAACCTAGG
64 CCATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
83966700 ACGTTCGATG
Statistics
Matches: 544, Mismatches: 70, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
252 3 0.01
253 367 0.67
254 106 0.19
255 66 0.12
256 2 0.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (254 bp):
GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCACC
ATCGGCAACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT
CGTGCGGGAGCCTCGGGTACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCAT
CGGTACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
Found at i:83966714 original size:126 final size:125
Alignment explanation
Indices: 83965825--83966755 Score: 810
Period size: 127 Copynumber: 7.3 Consensus size: 125
83965815 GTTTGTCGTA
* * *** * *
83965825 CGGGAGCCTCGGGCACCATCGGCACCTAGCCCCTTGG-TCGTGCGGGAGCCTCGGGCACCACCGG
1 CGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCGG
* ** * * * *
83965889 C-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTAGGGCACCATCGGCAACCTCGGACCC-TGGTCGC
65 CAACCTAGGCCCTTGG-TCGTGCGGGAGCCT-CGGCACCATCGGC-ACCTAGG-CCCTTGAT-GT
83965951 G
125 G
* * * * ** * *
83965952 TGGGAGCCTCGA-TACCATTGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCG
1 CGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCACCATCG
* * * * * *
83966015 G-TACCTAGGCCCTTGGTCGTGTGAGAGCCACGGGCACCATCGGAACCTAGGCCCTTGGTCGTG
64 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTAGGCCCTTGAT-GTG
* ** * * ** *
83966078 CGGGAGCCTCG-GCCACCATCGGCACCTAGGCCCCTGGTTGTGTAGGAGCTTCG-GCCACCATCG
1 CGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAG-CACCATCG
* * * *
83966141 GCAACTTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTG
64 GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTAGGCCCTTGAT-GTG
* *
83966205 CGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGC
1 CGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
* * *
83966270 AACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGACCATCGGCACCTAGGCCCTTGGTTGTG
66 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCCTT-GATGTG
* ** *
83966331 CGGGAGCCTCG-GCCACCATCGGCACCTAGGCCCTTGGATGTGCGGGAGCCTCGGGCACCATCGG
1 CGGGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
*
83966395 CAACCTAGGCCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGG-CCTTGATCGTG
65 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGAT-GTG
* * * * * *
83966458 CGAGAAG-CTCGGGTACCATCGTCACCTTGGTGCTTGGATGTGTGGGAGCCTCGAACACCATCGG
1 CG-GGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
* * * * *
83966522 TAACCTCGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTG
65 CAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGGCACCTAGG-CCCTT-GATGTG
** * * * *
83966586 CGGGAGCCTCGAGCAGTATTGGCACCTTGGTACTTGGATGTGCGGGAGCCTCGAGCAGCATTGGC
1 CGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
* ** * * *
83966651 -ACCTTGGTGCTTGG-AGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTTCGATGTG
66 AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGC-ACCTAGGCCCTT-GATGTG
* * ** * *
83966712 CGGGTGCCTCGAGCAACAGGGGCACCCTGGTGGCTCGGATGTGC
1 CGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTTGGATGTGC
83966756 AGGCTAAAGA
Statistics
Matches: 683, Mismatches: 95, Indels: 52
0.82 0.11 0.06
Matches are distributed among these distances:
125 7 0.01
126 243 0.36
127 362 0.53
128 68 0.10
129 3 0.00
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (125 bp):
CGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCACCTAGGCCCTTGATGTG
Found at i:83972941 original size:24 final size:24
Alignment explanation
Indices: 83972902--83972951 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
83972892 CCGGTTAGGT
* * *
83972902 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
83972926 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
83972950 TC
1 TC
83972952 TCGGGATACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.40, G:0.30, T:0.16
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:83973095 original size:58 final size:57
Alignment explanation
Indices: 83972988--83973107 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 57
83972978 TCCCTCCCTA
83972988 ATCCCAAAAGGTAGAATCAGATACCGTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATCAGATACCGTACATGTTCGGTACCCAATAATGAATGAATC
* * * *
83973045 ATCCC-AAAGGTAGGATTCGGATACCGTTGCATGTTCGGTACCTGAA-AATGAATGAATC
1 ATCCCAAAAGGTA-GAATCAGATACCG-TACATGTTCGGTACC-CAATAATGAATGAATC
*
83973103 GTCCC
1 ATCCC
83973108 TATCCCTCCC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
56 7 0.13
57 16 0.29
58 30 0.55
59 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (57 bp):
ATCCCAAAAGGTAGAATCAGATACCGTACATGTTCGGTACCCAATAATGAATGAATC
Found at i:83979410 original size:24 final size:24
Alignment explanation
Indices: 83979383--83979434 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
83979373 CCGGTTAGGT
*
83979383 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
83979407 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
83979431 TCCC
1 TCCC
83979435 AGAATATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.44, G:0.33, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:83991213 original size:40 final size:40
Alignment explanation
Indices: 83991144--83991219 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
83991134 GTTTGTCGTA
83991144 CGGGAGCCTCGGGCACATCGGCACCTAGGCCCTGGTTCGG
1 CGGGAGCCTCGGGCACATCGGCACCTAGGCCCTGGTTCGG
*
83991184 CGGGAGCCTC-GGCACCATCGGCACCTAGGCCTTGGT
1 CGGGAGCCTCGGGCA-CATCGGCACCTAGGCCCTGGT
83991220 ATGTGCGGAG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.13, C:0.36, G:0.36, T:0.16
Consensus pattern (40 bp):
CGGGAGCCTCGGGCACATCGGCACCTAGGCCCTGGTTCGG
Found at i:83991406 original size:33 final size:31
Alignment explanation
Indices: 83991342--83991409 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 31
83991332 GGTAACCATA
83991342 GGCCCTTGGTCGTGGGAGCCTCGGCACCACCTC
1 GGCCCTTGGTCGTGGGAGCCTCGG--CCACCTC
83991375 GGCCCTTGGTCGTGCGGGAGGCCTCGG-CACCTC
1 GGCCCTTGGTCGT--GGGA-GCCTCGGCCACCTC
83991408 GG
1 GG
83991410 GGGGGGGGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
33 21 0.66
35 4 0.12
36 7 0.22
ACGTcount: A:0.07, C:0.37, G:0.38, T:0.18
Consensus pattern (31 bp):
GGCCCTTGGTCGTGGGAGCCTCGGCCACCTC
Found at i:83997655 original size:24 final size:24
Alignment explanation
Indices: 83997616--83997665 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
83997606 CCGGTTAGGT
* * *
83997616 TCCCGGCGGTGCTCCGACGATCCA
1 TCCCGGCGATGATCCGACGAGCCA
*
83997640 TCCCGGCGATGATCCGGCGAGCCA
1 TCCCGGCGATGATCCGACGAGCCA
83997664 TC
1 TC
83997666 TCGGGATACA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.14, C:0.40, G:0.30, T:0.16
Consensus pattern (24 bp):
TCCCGGCGATGATCCGACGAGCCA
Found at i:83997809 original size:58 final size:57
Alignment explanation
Indices: 83997702--83997821 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 57
83997692 TCCCTCCCTA
83997702 ATCCCAAAAGGTAGAATCAGATACCGTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATCAGATACCGTACATGTTCGGTACCCAATAATGAATGAATC
* * * *
83997759 ATCCC-AAAGGTAGGATTCGGATACCGTTGCATGTTCGGTACCTGAA-AATGAATGAATC
1 ATCCCAAAAGGTA-GAATCAGATACCG-TACATGTTCGGTACC-CAATAATGAATGAATC
*
83997817 GTCCC
1 ATCCC
83997822 TATCCCTCCC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
56 7 0.13
57 16 0.29
58 30 0.55
59 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (57 bp):
ATCCCAAAAGGTAGAATCAGATACCGTACATGTTCGGTACCCAATAATGAATGAATC
Found at i:84004348 original size:24 final size:24
Alignment explanation
Indices: 84004321--84004372 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
84004311 CCGGTTAGGT
*
84004321 TCCCGGCGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
84004345 TCCCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
84004369 TCCC
1 TCCC
84004373 AGAATATTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.08, C:0.44, G:0.33, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:84005140 original size:35 final size:35
Alignment explanation
Indices: 84005101--84005172 Score: 99
Period size: 35 Copynumber: 2.1 Consensus size: 35
84005091 GTCTGGGATC
*
84005101 GCATATCTTTGAAGATCCCCTTCCATATTTGCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
* * * *
84005136 GCATATCTTTTAAGATTACTTTCCATATTTTCCAA
1 GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
84005171 GC
1 GC
84005173 TCCGGAGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.26, C:0.25, G:0.10, T:0.39
Consensus pattern (35 bp):
GCATATCTTTGAAGATCACCTTCCATATTTGCCAA
Found at i:84010330 original size:35 final size:35
Alignment explanation
Indices: 84010291--84010361 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
84010281 TCTGGGATTA
*
84010291 CATATCTTTGAAGATCCCCTTCCATATTTGCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
* * *
84010326 CATATCTTTGAAGATTACTTTCCATATTTTCCAAG
1 CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
84010361 C
1 C
84010362 TCCGGAGATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.10, T:0.38
Consensus pattern (35 bp):
CATATCTTTGAAGATCACCTTCCATATTTGCCAAG
Found at i:84010696 original size:40 final size:39
Alignment explanation
Indices: 84010543--84011260 Score: 539
Period size: 40 Copynumber: 18.7 Consensus size: 39
84010533 GGTGATTGAT
* *
84010543 GTGCGGGAGCCTTGGCACCATCGGCAACCTAGGCCTTGGTC
1 GTGC-GGAGCCTCGGCACCATCGG-AACCTAGGCCCTGGTC
* *
84010584 --GCGGAGCCTC-G-ACCATC-GCACCTAGGCCTTGGTC
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
*
84010618 GTGCGGAGCCTCGGCACCATCGG-ACCTAGGCCTTGGTC
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
84010656 GTGCGAGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
1 GTGCG-GAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
84010696 GTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGC-GGAGCCTCGG-CACCATCGG-AACCTAGGCCC-TGGTC
84010739 GTG-GGAGCCTCGGCACCATCGG-ACCTAGGCCCTGGTC
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
*
84010776 GTG-GGAG-CTCGGCACCATCGGCAACCTAGCCCCTGGTC
1 GTGCGGAGCCTCGGCACCATCGG-AACCTAGGCCCTGGTC
*
84010814 GTGCGGAGCCTCGGCACCATCGGCA-CTAGGCCCTGGTC
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
84010852 GTGCGGAGCCT-GG--CCATCGG-A-CT-GG---TGGT-
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
84010881 GTGCGGAGCCTCGGCACCAT------C---G-CCTGGTC
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
*
84010910 GTGC-GAGCCTCGGCACCATCGGCACCTAGGCCCTGGTC
1 GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
*
84010948 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGG-CCTTGTC
1 GTGC-GGAGCCTCGGCACCATCGG-AACCTAGGCCCTGGTC
* * * *
84010988 GTGC-GAGACCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGAG-CCTC-GGCACCATCGGAACCTAGG-CCCTGG-TC
* *
84011029 GTGCGGGAGCCTCGAACACCATCGGCAACCTA-GCCTTGGTC
1 GTGC-GGAGCCTCG-GCACCATCGG-AACCTAGGCCCTGGTC
* * * * *
84011070 GTGCGGGAGCCTCGGGA-CATCGGCACCTTGGTGCTTGGAT-
1 GTGC-GGAGCCTCGGCACCATCGGAACCTAGG-CCCTGG-TC
* * * * * * *
84011110 GTGCGGGAGCCTCGAGCAGCGTTGGCACCTTGGTCTTGGAT-
1 GTGC-GGAGCCTCG-GCACCATCGGAACCTAGGCCCTGG-TC
** * * ***
84011151 GTGCAGGAGCCTCGGCAGTAT-GGCACCTTGGTGTTGGAT-
1 GTGC-GGAGCCTCGGCACCATCGGAACCTAGGCCCTGG-TC
* *
84011190 GTGCGGGAGCCTCGACACCATCGGCAACCT-GGTCCTTGGTC
1 GTGC-GGAGCCTCGGCACCATCGG-AACCTAGG-CCCTGGTC
*
84011231 GTGCGGGAGCCTCGGGCACCATCGGCACCT
1 GTGC-GGAGCCTC-GGCACCATCGGAACCT
84011261 TGGTGCCTTG
Statistics
Matches: 585, Mismatches: 38, Indels: 108
0.80 0.05 0.15
Matches are distributed among these distances:
26 1 0.00
28 20 0.03
29 15 0.03
30 6 0.01
32 4 0.01
33 2 0.00
34 19 0.03
35 8 0.01
36 30 0.05
37 17 0.03
38 101 0.17
39 77 0.13
40 120 0.21
41 102 0.17
42 48 0.08
43 15 0.03
ACGTcount: A:0.14, C:0.33, G:0.34, T:0.19
Consensus pattern (39 bp):
GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTGGTC
Found at i:84010913 original size:29 final size:29
Alignment explanation
Indices: 84010845--84010930 Score: 99
Period size: 28 Copynumber: 3.0 Consensus size: 29
84010835 GGCACTAGGC
84010845 CCTGGTCGTGCGGAGCCT-GG--CCATCGG
1 CCTGGTCGTGCGGAGCCTCGGCACCATC-G
* *
84010872 ACTGGTGGTGTGCGGAGCCTCGGCACCATCG
1 CCTGGT--CGTGCGGAGCCTCGGCACCATCG
84010903 CCTGGTCGTGC-GAGCCTCGGCACCATCG
1 CCTGGTCGTGCGGAGCCTCGGCACCATCG
84010931 GCACCTAGGC
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
27 5 0.10
28 17 0.34
29 15 0.30
30 2 0.04
31 6 0.12
32 5 0.10
ACGTcount: A:0.10, C:0.34, G:0.37, T:0.19
Consensus pattern (29 bp):
CCTGGTCGTGCGGAGCCTCGGCACCATCG
Found at i:84011065 original size:81 final size:83
Alignment explanation
Indices: 84010905--84011365 Score: 461
Period size: 81 Copynumber: 5.7 Consensus size: 83
84010895 CACCATCGCC
* * * *
84010905 TGGTCGTGC--GAGCCTC-GGCACCATCGGCACCTAGG-CCCTGG-TCGTGCGGGAGCCTCG-GC
1 TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAAC
84010964 ACCATCGGCAACCTAGGCCT
65 ACCATCGGCAACCTA-GCCT
84010984 T-GTCGTGCGAGA-CCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACA
1 TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACA
84011047 CCATCGGCAACCTAGCCT
66 CCATCGGCAACCTAGCCT
* *
84011065 TGGTCGTGCGGGAGCCTCGGG-A-CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCA
1 TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACA
* * * * *
84011128 GCGTTGGC-ACCTTGGTCT
66 CCATCGGCAACC-TAGCCT
**
84011146 TGGAT-GTGC-AGGAGCCTC-GGCAGTAT-GGCACCTTGGTG-TTGGATGTGCGGGAGCCTCG-A
1 TGG-TCGTGCGA-GAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAA
*
84011205 CACCATCGGCAACCTGGTCCT
64 CACCATCGGCAACCTAG-CCT
* *
84011226 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGC
1 TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAAC
* * * *
84011291 AGCATTGGC-ACCTTGGTGCT
65 ACCATCGGCAACC-TAG-CCT
*
84011311 TGGAT-GTGCGGGAGCCTC-GG-ACCAT-GGCACC-T-G-GCTTGGATGTGCGGG-GCCTCGA
1 TGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA
84011366 GCAGCAGGGG
Statistics
Matches: 333, Mismatches: 25, Indels: 50
0.82 0.06 0.12
Matches are distributed among these distances:
77 7 0.02
78 21 0.06
79 17 0.05
80 65 0.20
81 106 0.32
82 49 0.15
83 12 0.04
84 25 0.08
85 30 0.09
86 1 0.00
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (83 bp):
TGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACA
CCATCGGCAACCTAGCCT
Found at i:84011229 original size:161 final size:163
Alignment explanation
Indices: 84010905--84011365 Score: 582
Period size: 162 Copynumber: 2.9 Consensus size: 163
84010895 CACCATCGCC
* *
84010905 TGGTCGTGC--GAGCCTC-GGCACCATCGGCACC-TAG-GCCCTGG-TCGTGCGGGAGCCTCG-G
1 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT-GTGCGGGAGCCTCGAG
* * * *
84010963 CACCATCGGCAACCTAGG-CCTT-G-TCGTGC--GAGACCTCGGGCACCATCGGCACCTTGGTGC
65 CAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCAGGAG-CCTC-GG-ACCAT-GGCACCTTGGTG-
84011023 TTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTAGCCT
123 TTGGATGTGCGGGAGCCTCG-ACACCATCGGCAACCTAGCCT
84011065 TGGTCGTGCGGGAGCCTCGGG-A-CATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGC
1 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGC
* **
84011127 AGCGTTGGCACCTTGGT-CTTGGATGTGCAGGAGCCTCGGCAGTATGGCACCTTGGTGTTGGATG
66 AGCATTGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGG-ACCATGGCACCTTGGTGTTGGATG
*
84011191 TGCGGGAGCCTCGACACCATCGGCAACCTGGTCCT
130 TGCGGGAGCCTCGACACCATCGGCAACCTAG-CCT
84011226 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGC
1 TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGC
* *
84011291 AGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACCATGGCACC-TGG-CTTGGATGT
66 AGCATTGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGGACCATGGCACCTTGGTGTTGGATGT
84011354 GCGGG-GCCTCGA
131 GCGGGAGCCTCGA
84011366 GCAGCAGGGG
Statistics
Matches: 270, Mismatches: 14, Indels: 33
0.85 0.04 0.10
Matches are distributed among these distances:
160 26 0.10
161 61 0.23
162 63 0.23
163 42 0.16
164 54 0.20
165 24 0.09
ACGTcount: A:0.14, C:0.29, G:0.36, T:0.21
Consensus pattern (163 bp):
TGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGC
AGCATTGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGGACCATGGCACCTTGGTGTTGGATGT
GCGGGAGCCTCGACACCATCGGCAACCTAGCCT
Found at i:84011237 original size:121 final size:121
Alignment explanation
Indices: 84010948--84011400 Score: 482
Period size: 121 Copynumber: 3.7 Consensus size: 121
84010938 GGCCCTGGTC
* *
84010948 GTGCGGGAGCCTCGGCACCATCGGCAACCTAGGCCTT-G-TCGTGCGAGA-CCTCGGGCACCATC
1 GTGCGGGAGCCTCGGCACCATCGGC-ACCT-GGCCTTGGAT-GTGCGGGAGCCTCGAGCACCATC
* * * **
84011010 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACC-TAGCCTTGG-T
63 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCAT-GGC-ACCTTGGTGTTGGAT
* * * * *
84011069 CGTGCGGGAGCCTCGGGA-CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCGTT
1 -GTGCGGGAGCCTCGGCACCATCGGCACC-TGG-CCTTGGATGTGCGGGAGCCTCGAGCACCATC
* *
84011133 GGCACCTTGGT-CTTGGATGTGCAGGAGCCTCG-GCAGTATGGCACCTTGGTGTTGGAT
63 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATGGCACCTTGGTGTTGGAT
* *
84011190 GTGCGGGAGCCTCGACACCATCGGCAACCTGGTCCTTGG-TCGTGCGGGAGCCTCGGGCACCATC
1 GTGCGGGAGCCTCGGCACCATCGGC-ACCTGG-CCTTGGAT-GTGCGGGAGCCTCGAGCACCATC
84011254 GGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
63 GGCACCTTGGTG-CTTGGATGTGCGGGAGCCTCGAGCAGCA-TGGCACCTTGGTG-TTGGAT
* **
84011316 GTGCGGGAGCCTCGG-ACCAT-GGCACCTGG-CTTGGATGTGCGGG-GCCTCGAGCAGCAGGGGC
1 GTGCGGGAGCCTCGGCACCATCGGCACCTGGCCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
* * *
84011377 ACCCTGGTGGCTCGGATGTACGGG
66 ACCTTGGT-GCTTGGATGTGCGGG
84011401 CTAAAGAAGA
Statistics
Matches: 283, Mismatches: 31, Indels: 36
0.81 0.09 0.10
Matches are distributed among these distances:
119 3 0.01
120 63 0.22
121 75 0.27
122 48 0.17
123 48 0.17
124 8 0.03
125 18 0.06
126 20 0.07
ACGTcount: A:0.14, C:0.28, G:0.37, T:0.21
Consensus pattern (121 bp):
GTGCGGGAGCCTCGGCACCATCGGCACCTGGCCTTGGATGTGCGGGAGCCTCGAGCACCATCGGC
ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATGGCACCTTGGTGTTGGAT
Found at i:84011394 original size:42 final size:42
Alignment explanation
Indices: 84010988--84011400 Score: 398
Period size: 42 Copynumber: 10.2 Consensus size: 42
84010978 AGGCCTTGTC
* * * *
84010988 GTGCGAGA-CCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
* * * * *
84011029 GTGCGGGAGCCTCGAACACCATCGGCAACC-TAG-CCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT
* *
84011069 CGTGCGGGAGCCTCG-GGA-CATCGGCACCTTGGTGCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
*
84011110 GTGCGGGAGCCTCGAGCAGCGTTGGCACCTTGGT-CTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
* *
84011151 GTGCAGGAGCCTCG-GCAGTA-TGGCACCTTGGTG-TTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
* * *
84011190 GTGCGGGAGCCTCGA-CACCATCGGCAACC-TGGTCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT
* * *
84011230 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTTGGAT
84011274 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
*
84011316 GTGCGGGAGCCTCG-G-ACCA-TGGCACC-T-G-GCTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
** * *
84011352 GTGCGGG-GCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGT-GCTTGGAT
*
84011394 GTACGGG
1 GTGCGGG
84011401 CTAAAGAAGA
Statistics
Matches: 317, Mismatches: 30, Indels: 49
0.80 0.08 0.12
Matches are distributed among these distances:
35 6 0.02
36 16 0.05
37 4 0.01
38 10 0.03
39 51 0.16
40 37 0.12
41 74 0.23
42 78 0.25
43 40 0.13
44 1 0.00
ACGTcount: A:0.14, C:0.28, G:0.38, T:0.21
Consensus pattern (42 bp):
GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
Found at i:84024701 original size:58 final size:59
Alignment explanation
Indices: 84024603--84024719 Score: 173
Period size: 58 Copynumber: 2.0 Consensus size: 59
84024593 TCCCTCCCCA
* *
84024603 ATCCCAAAAGGTAGAATTCAGATACCGTTACATATTCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATATCCGGTACCCAACAATGAATGAATC
* * * *
84024662 ATCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATATCCGGTACCCAACAATGAATGAATC
84024720 GTCACTGTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
58 47 0.90
59 5 0.10
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.24
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACCGTTACATATCCGGTACCCAACAATGAATGAATC
Found at i:84025153 original size:24 final size:24
Alignment explanation
Indices: 84025120--84025197 Score: 120
Period size: 24 Copynumber: 3.2 Consensus size: 24
84025110 CCGGTTAGGT
* *
84025120 TCCCGACGGTGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
84025144 TCTCGGCGGTGCTCCGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
*
84025168 TCCCGGCGGTGCTCTGGCGAGCCA
1 TCCCGGCGGTGCTCCGGCGAGCCA
84025192 TCCCGG
1 TCCCGG
84025198 AATATCAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 49 1.00
ACGTcount: A:0.09, C:0.40, G:0.35, T:0.17
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGAGCCA
Found at i:84025488 original size:42 final size:43
Alignment explanation
Indices: 84025384--84026664 Score: 1018
Period size: 42 Copynumber: 30.6 Consensus size: 43
84025374 CACATTGCTG
* * * *
84025384 CTTGGA-CGTGCTGGAGCCTTG-GACGCCATCGGCAACCTAGGAC
1 CTTGGATCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTAGGTC
* * * * * *
84025427 GTTTG-TCATGCGGGAGCCTCGAGCACCACCGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * *
84025469 CTTGGAT-GTGCTGGAGCCTCGGGCACCATCGACAACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGTC
* * * * *
84025511 CTCTGG-TAGCGCGGAAGCCTCGA-TACCATCGGCAACCTAGGCC
1 CT-TGGATCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGTC
* * *
84025554 CTTGG-TCGTGCGAGAGCCTCCAGCACCATCGGAACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * * *
84025595 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* *
84025637 CCTGG-TCGTGCGGGAGCCTCG-GCCACCATC-GCAACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTAGGTC
* * *
84025679 CTTGG-TTGTGCGGGAGCCTCGACCACCATCGGCACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* ** * * * *
84025721 CCTGG-TCGTGTAGGAGCTTCG-GCCACCATCGACAACTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAG-CACCATCGGCACCTAGGTC
* *
84025763 CTTGG-TCGTGCGAGAGCCTCGAGCACCATCAGCACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * *
84025804 CTTGG-TCGTG-GGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * *
84025845 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGG-CACCTAGGTC
* *
84025888 CCTGG-TCGTGCGGGAGCTTCG-GCCACCATCGGCAACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTAGGTC
* * *
84025930 CTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * *
84025972 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* *
84026014 CTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGTC
* * *
84026057 CTTGG-TCGTGCGAGAGCCTCG-GGACCATCGGCACCTAGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
84026098 CTTGGAT-GTGCGGGAGCCTCG-GCAACCATCGGCAACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAGC-ACCATCGGC-ACCTAGGTC
* * *
84026140 CCTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGG-CACCTAGGTC
* * * *
84026182 CTT-GATCGTGCGAGAACCTCGGGCACCATTGGCAACCTAGG-C
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGTC
* * * * *
84026224 CTT-GATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
*
84026266 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGG---C-----C
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * * *
84026300 CTTGG-TCGTGCGGGATCCTCGGGCACCATCGGTACCTTGGTGC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGT-C
* * * *
84026343 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * * * *
84026385 CTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * * *
84026427 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGTAACCTCGGCC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGG-CACCTAGGTC
* *
84026470 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGC
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGT-C
* * * * * *
84026513 CTTGGAT-GTACGAGAGCCTCGAGCAGCATTGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * * * *
84026555 CTTGGAT-GTGCGGGAGCCTCGAGTAGCATTGGCACCTTGGTG
1 CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
* * * * *
84026597 CTTGGAT-GTGCGGGATCTTCG-GACACCATCGGTAACTTAGGAC
1 CTTGGATCGTGCGGGAGCCTCGAG-CACCATCGG-CACCTAGGTC
*
84026640 GTTGGAT-GTGCGGGAGCCTCGAGCA
1 CTTGGATCGTGCGGGAGCCTCGAGCA
84026665 GCAGGGGCAC
Statistics
Matches: 1041, Mismatches: 142, Indels: 110
0.81 0.11 0.09
Matches are distributed among these distances:
33 1 0.00
34 27 0.03
37 1 0.00
39 1 0.00
40 25 0.02
41 104 0.10
42 614 0.59
43 264 0.25
44 4 0.00
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (43 bp):
CTTGGATCGTGCGGGAGCCTCGAGCACCATCGGCACCTAGGTC
Found at i:84025623 original size:84 final size:85
Alignment explanation
Indices: 84025435--84026660 Score: 1131
Period size: 84 Copynumber: 14.7 Consensus size: 85
84025425 ACGTTTGTCA
* * * ** *
84025435 TGCGGGAGCCTCGAGCACCACCGGC-ACCTTGGTGCTTGGAT-GTGCTGGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
*
84025498 CGACAACCTAGG-CCTCTGG-TAG
65 CG-GAACCTAGGTCCT-TGGAT-G
* * ** * **
84025520 CGCGGAAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCCAGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
84025584 GGAACCTAGG-CCTTGG-TCG
66 GGAACCTAGGTCCTTGGAT-G
* * *
84025603 TGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
84025667 GCAACCTAGGCCCTTGGTTG
66 GGAACCTAGGTCCTTGGATG
** * ** * *
84025687 TGCGGGAGCCTCGACCACCATCGGC-ACCTAGGCCCCTGGTCGTGTAGGAGCTTCGGCCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *
84025751 -GACAACTAGGCCCTTGG-TCG
66 GGA-ACCTAGGTCCTTGGAT-G
* * *
84025771 TGCGAGAGCCTCGAGCACCATCAGC-ACCTAGG-CCTTGGTCGTG-GGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
84025833 GGCACCTTGGTGCTTGGATG
66 GGAACCTAGGTCCTTGGATG
* * * *
84025853 TGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCTTCGGCCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
84025918 GGCAACCTAGG-CCTTGG-TCG
66 GG-AACCTAGGTCCTTGGAT-G
*
84025938 TGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
84026002 GGCACCTTGGTGCTTGGATG
66 GGAACCTAGGTCCTTGGATG
*
84026022 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-ACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *
84026086 GGCACCTAGGCCCTTGGATG
66 GGAACCTAGGTCCTTGGATG
84026106 TGCGGGAGCCTC-GGCAACCATCGGCAACCTAGGCCC-TGGTCGTGCGGGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGGC-ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
84026169 CGGTAACCTAGG-CCTT-GATCG
65 CGG-AACCTAGGTCCTTGGAT-G
* * * * * *
84026190 TGCGAGAACCTCGGGCACCATTGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* * *
84026254 GGCACCTTGGTGCTTGGATG
66 GGAACCTAGGTCCTTGGATG
* * *
84026274 TGCGGGAGCCTC--G-AACA-C--C-A--TCGGCCCTTGGTCGTGCGGGATCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *
84026330 GGTACCTTGGTGCCTTGGATG
66 GGAACCTAGGT-CCTTGGATG
* * * * ** * * *
84026351 TGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAAGCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * * *
84026414 TGGCACCTTGGTGCTTGGATG
65 CGGAACCTAGGTCCTTGGATG
** * *
84026435 TGCGGGAGCCTCGAACACCATCGGTAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
* *
84026500 GGCACCTTGGTGCCTTGGATG
66 GGAACCTAGGT-CCTTGGATG
* * * * * * ** * * *
84026521 TACGAGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGTAGCAT
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCAT
* * * *
84026584 TGGCACCTTGGTGCTTGGATG
65 CGGAACCTAGGTCCTTGGATG
* * * * * * *
84026605 TGCGGGATCTTCGGACACCATCGGTAACTTAGGACGTTGGAT-GTGCGGGAGCCTCG
1 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
84026661 AGCAGCAGGG
Statistics
Matches: 957, Mismatches: 142, Indels: 84
0.81 0.12 0.07
Matches are distributed among these distances:
75 3 0.00
76 38 0.04
77 21 0.02
78 1 0.00
79 1 0.00
80 3 0.00
81 3 0.00
82 49 0.05
83 121 0.13
84 404 0.42
85 278 0.29
86 35 0.04
ACGTcount: A:0.16, C:0.31, G:0.34, T:0.19
Consensus pattern (85 bp):
TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
GGAACCTAGGTCCTTGGATG
Found at i:84026199 original size:23 final size:23
Alignment explanation
Indices: 84026173--84026242 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
84026163 CACCATCGGT
84026173 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* * *** *
84026196 AACCTCGGGCACCAT--TG-G-C
1 AACCTAGGCCTTGATCGTGCGAG
84026215 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
84026238 AACCT
1 AACCT
84026243 CGGGCACCAT
Statistics
Matches: 31, Mismatches: 12, Indels: 8
0.61 0.24 0.16
Matches are distributed among these distances:
19 10 0.32
20 1 0.03
21 4 0.13
22 1 0.03
23 15 0.48
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:84026254 original size:23 final size:23
Alignment explanation
Indices: 84026186--84026254 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
84026176 CTAGGCCTTG
84026186 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
* * * ***
84026209 AT--TG-G-CAACCTAGGCCTTG
1 ATCGTGCGAGAACCTCGGGCACC
84026228 ATCGTGCGAGAACCTCGGGCACC
1 ATCGTGCGAGAACCTCGGGCACC
84026251 ATCG
1 ATCG
84026255 GCACCTTGGT
Statistics
Matches: 30, Mismatches: 12, Indels: 8
0.60 0.24 0.16
Matches are distributed among these distances:
19 10 0.33
20 1 0.03
21 4 0.13
22 1 0.03
23 14 0.47
ACGTcount: A:0.22, C:0.32, G:0.29, T:0.17
Consensus pattern (23 bp):
ATCGTGCGAGAACCTCGGGCACC
Found at i:84026311 original size:34 final size:35
Alignment explanation
Indices: 84026273--84026340 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 35
84026263 GTGCTTGGAT
*
84026273 GTGCGGGAGCCTCGAACACCATCGG-CCCTTGGTC
1 GTGCGGGAGCCTCGAACACCATCGGTACCTTGGTC
* **
84026307 GTGCGGGATCCTCGGGCACCATCGGTACCTTGGT
1 GTGCGGGAGCCTCGAACACCATCGGTACCTTGGT
84026341 GCCTTGGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 22 0.76
35 7 0.24
ACGTcount: A:0.13, C:0.32, G:0.34, T:0.21
Consensus pattern (35 bp):
GTGCGGGAGCCTCGAACACCATCGGTACCTTGGTC
Found at i:84026474 original size:85 final size:84
Alignment explanation
Indices: 84026294--84026696 Score: 396
Period size: 85 Copynumber: 4.7 Consensus size: 84
84026284 TCGAACACCA
* * * *
84026294 TCGGCCCTTGG-TCGTGCGGGATCCTCGGGCACCATCGGTACCTTGGTGCCTTGGATGTGCGGGA
1 TCGGCCCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTTGGATGTGCGGGA
* * * *
84026358 GCCTCGAGCAGCATTGGCACC
64 GCCTCGAACACCATCGGAACC
* ** * *
84026379 TTGGTGCTTGGATGTGCGGGAGCCTCGAGAAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGC
1 TCGGCCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
84026444 CTCGAACACCATCGGTAACC
66 CTCGAACACCATCGG-AACC
* * * *
84026464 TCGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGATGTACGAGA
1 TCGGCCCTTGGAT-GTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTG-CTTGGATGTGCGGGA
* * * *
84026528 GCCTCGAGCAGCATTGGCACC
64 GCCTCGAACACCATCGGAACC
* ** * * *
84026549 TTGGTGCTTGGATGTGCGGGAGCCTCGAGTAGCATTGGCACCTTGGTGCTTGGATGTGCGGGATC
1 TCGGCCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
* * *
84026614 TTCGGACACCATCGGTAACT
66 CTCGAACACCATCGG-AACC
* * * ** * *
84026634 TAGGACGTTGGATGTGCGGGAGCCTCGAGCAGCAGGGGCACCCTGGTGGCTCGGATGTGCGGG
1 TCGGCCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTTGGATGTGCGGG
84026697 CTAAAGAAAA
Statistics
Matches: 259, Mismatches: 52, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
84 54 0.21
85 162 0.63
86 43 0.17
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.23
Consensus pattern (84 bp):
TCGGCCCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGC
CTCGAACACCATCGGAACC
Found at i:84037509 original size:40 final size:41
Alignment explanation
Indices: 84037465--84037541 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 41
84037455 GCAGTCGGGA
* *
84037465 TCGGGACACCATC-GCACTTGGTG-TTGGATGTGCGGGAGCC
1 TCGGG-CACCATCGGCACCTGGTGCCTGGATGTGCGGGAGCC
84037505 TCGGGCACCATCGGCACCTGGTGCCTGGATGTGCGGG
1 TCGGGCACCATCGGCACCTGGTGCCTGGATGTGCGGG
84037542 CTAAAGAAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 7 0.21
40 14 0.42
41 12 0.36
ACGTcount: A:0.13, C:0.27, G:0.39, T:0.21
Consensus pattern (41 bp):
TCGGGCACCATCGGCACCTGGTGCCTGGATGTGCGGGAGCC
Found at i:84045167 original size:24 final size:24
Alignment explanation
Indices: 84045128--84045180 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
84045118 CCGGTTAGGT
* * *
84045128 TCCCGGTGGTGCTCCGACGATCCA
1 TCCCGGTGATGATCCGACGAGCCA
*
84045152 TCCCGGTGATGATCCGGCGAGCCA
1 TCCCGGTGATGATCCGACGAGCCA
84045176 TCCCG
1 TCCCG
84045181 AGATACACAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.13, C:0.38, G:0.30, T:0.19
Consensus pattern (24 bp):
TCCCGGTGATGATCCGACGAGCCA
Found at i:84045306 original size:58 final size:59
Alignment explanation
Indices: 84045215--84045335 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 59
84045205 CCCTCCCCAA
* * *
84045215 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCAGTACCCAACAATGAATGAATCG
* * *
84045274 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCAGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCAGTACCCAACAATGAATGAATCG
84045332 TCCC
1 TCCC
84045336 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCAGATACCGTTACATGTCCAGTACCCAACAATGAATGAATCG
Found at i:84060616 original size:42 final size:43
Alignment explanation
Indices: 84060490--84061359 Score: 873
Period size: 42 Copynumber: 20.5 Consensus size: 43
84060480 CACATTGCTA
* * * * * *
84060490 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* * * *
84060533 GTTTGTCGTGCGGGAGCCTCGGGCACAATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* ** * **
84060576 CCTGGTCGCACGGGAACCTC-GATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* * * *
84060618 CTTGGTCATTCGAGAGCCTCGGGCACCATCGG-AACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* * *
84060660 CTTGGTCATGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* *
84060702 CCTGGTCGTGCGGGAGCCTCGACCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
84060745 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
**
84060787 CTTGGTCGTGTAGGAGCCTCGGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
84060830 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* ** * *
84060872 CCTGGTCGTGTAGGAGCTTCTGCCACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* *
84060915 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
*
84060957 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGAC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* * *
84060999 CTTGGAT-GTGCGAGAGCCTTGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* * *
84061042 CCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-C
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* * * * * *
84061084 CTTGATCGTGCGAGAACCTCGGGCACCATCGGC-ACCTTGGTGC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGG-CC
* * **
84061127 TTTGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCA-GCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCT-AGGCC
* * *
84061169 CTTGGTCGTGCGGGAACCTCGGGCACCATCGGC-ACCTTGGTGCC
1 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACC-TAG-GCC
* * * * * **
84061213 TTTGAT-GTGCGGGAGCCTCGAG-CAGCATTGGC-ACCTTGGTG
1 CTTGGTCGTGCGGGAGCCTCG-GCCACCATCGGCAACCTAGGCC
* * * **
84061254 CTTGGAT-GTGCGGGAGCCTCGAG-CAGCATTGGC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCG-GCCACCATCGGCAACCTAGGCC
* *
84061296 CTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGAC
1 CTTGG-TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
* *
84061339 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
84061360 AGCAGCAGGG
Statistics
Matches: 715, Mismatches: 93, Indels: 38
0.85 0.11 0.04
Matches are distributed among these distances:
41 11 0.02
42 392 0.55
43 304 0.43
44 8 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGCC
Found at i:84060730 original size:127 final size:129
Alignment explanation
Indices: 84060515--84061359 Score: 865
Period size: 127 Copynumber: 6.6 Consensus size: 129
84060505 GCCTTGGACG
* * * * * *
84060515 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACAATCGGCAACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
** * ** *
84060580 GTCGCACGGGAACCTC-GATACCATCGGCAACCTAGGCCCTTGGTCAT-TCGAGAGCCTCGGGCA
66 GTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGTCATGTCGAGAGCCTCGGCCA
* *
84060643 CCATCGG-AACCTAGGCCCTTGGTCATGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCCCTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * *
84060706 GTCGTGCGGGAGCCTCGACCACCATCGGCAACCTAGGCCCTTGGTCGTG-CGGGAGCCTCGGCCA
66 GTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTGGTCATGTCGAGAGCCTCGGCCA
* *
84060770 CCATCGGC-ACCTAGGCCCTTGGTCGTG-TAGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTT
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGGCAACCTAGGCCCTT
* * * * *
84060833 GGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCGTGTAG-GAGCTTCTGCCA
65 GGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCATGTCGAGAGCCTCGGCCA
84060897 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * *
84060961 GTCGTGCGGGAGCCTCGGCCACCATCGACACCTAGGCCCTTGG--ATGTGCGAGAGCCTTGGGCA
66 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCATGT-CGAGAGCCTCGGCCA
*
84061024 CCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTG
1 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * * * * ** * * **
84061088 ATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTGCTT--TGATGTGCGGGAGCCTCGAACA
66 GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCATGT-CGAGAGCCTCGGCCA
* * * *
84061151 CCATCGGCAACCTCA-GCCCTTGGTCGTGCGGGAACCTCGGGCACCATCGGC-ACCTTGGTGCCT
1 CCATCGGCAACCT-AGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACC-TAG-GCCC
* * * * ** *
84061214 TTGAT-GTGCGGGAGCCTCGAG-CAGCATTGGCACCTTGGTGCTTGG--ATGTGCGGGAGCCTCG
63 TTGGTCGTGCGGGAGCCTCG-GCCACCATCGGCACCTAGGCCCTTGGTCATGT-CGAGAGCCTCG
84061275 AG-CA
126 -GCCA
* * * ** * * * *
84061279 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACGTT
1 CCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT
*
84061342 GGAT-GTGCGGGTGCCTCG
65 GG-TCGTGCGGGAGCCTCG
84061360 AGCAGCAGGG
Statistics
Matches: 623, Mismatches: 69, Indels: 51
0.84 0.09 0.07
Matches are distributed among these distances:
125 3 0.00
126 37 0.06
127 419 0.67
128 156 0.25
129 8 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (129 bp):
CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
GTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCATGTCGAGAGCCTCGGCCA
Found at i:84061114 original size:23 final size:23
Alignment explanation
Indices: 84061047--84061114 Score: 54
Period size: 23 Copynumber: 3.1 Consensus size: 23
84061037 AGGCCCCTGG
*
84061047 TCGTGCGAGAGCCTCGGGCACCA
1 TCGTGCGAGAACCTCGGGCACCA
* * ***
84061070 TCG-GC---AACCTAGGCCTTGA
1 TCGTGCGAGAACCTCGGGCACCA
84061089 TCGTGCGAGAACCTCGGGCACCA
1 TCGTGCGAGAACCTCGGGCACCA
84061112 TCG
1 TCG
84061115 GCACCTTGGT
Statistics
Matches: 30, Mismatches: 11, Indels: 8
0.61 0.22 0.16
Matches are distributed among these distances:
19 11 0.37
20 2 0.07
22 2 0.07
23 15 0.50
ACGTcount: A:0.19, C:0.34, G:0.31, T:0.16
Consensus pattern (23 bp):
TCGTGCGAGAACCTCGGGCACCA
Found at i:84061374 original size:85 final size:85
Alignment explanation
Indices: 84060490--84061359 Score: 904
Period size: 85 Copynumber: 10.2 Consensus size: 85
84060480 CACATTGCTA
* * * * * * * *
84060490 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
* *
84060555 GCACAATCGGCAACCTAGGCC
65 ACACCATCGGCAACCTAGGCC
* ** * ** * * *
84060576 CCTGGTCGCACGGGAACCTC-GATACCATCGGCAACCTAGGCCCTTGGTCATTCGAGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG
*
84060640 GCACCATCGG-AACCTAGGCC
65 ACACCATCGGCAACCTAGGCC
* * * *
84060660 CTTGGTCATGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTC-GA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
84060724 CCACCATCGGCAACCTAGGCC
66 -CACCATCGGCAACCTAGGCC
* ** *
84060745 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTGGTCGTGTAGGAGCCTCGGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
84060810 CACCATCGGCAACCTAGGCC
66 CACCATCGGCAACCTAGGCC
* * ** * * *
84060830 CTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCCTGGTCGTGTAGGAGCTTCTGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
84060895 CACCATCGGCAACCTAGGCC
66 CACCATCGGCAACCTAGGCC
* *
84060915 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
*
84060980 CACCATCGAC-ACCTAGGCC
66 CACCATCGGCAACCTAGGCC
* * * *
84060999 CTTGGAT-GTGCGAGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
84061063 GGCACCATCGGCAACCTAGG-C
64 GACACCATCGGCAACCTAGGCC
* * * * * * * *
84061084 CTTGATCGTGCGAGAACCTCGGGCACCATCGGCACCTTGGTGCTTTGAT-GTGCGGGAGCCTCGA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGG
84061148 ACACCATCGGCAACCTCA-GCC
65 ACACCATCGGCAACCT-AGGCC
* * * *
84061169 CTTGGTCGTGCGGGAACCTCGGGCACCATCGGCACCTTGGTGCCTTTGAT-GTGCGGGAGCCTC-
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACC-TAG-GCCCTTGGTCGTGCGGGAGCCTCG
* * * **
84061232 GAGCAGCATTGGC-ACCTTGGTG
64 GA-CACCATCGGCAACCTAGGCC
* * * * **
84061254 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
*
84061317 GACACCATCGGCAACCTAGGAC
64 GACACCATCGGCAACCTAGGCC
* *
84061339 GTTGGAT-GTGCGGGTGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
84061360 AGCAGCAGGG
Statistics
Matches: 674, Mismatches: 91, Indels: 39
0.84 0.11 0.05
Matches are distributed among these distances:
83 5 0.01
84 157 0.23
85 459 0.68
86 52 0.08
87 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGA
CACCATCGGCAACCTAGGCC
Found at i:84065118 original size:40 final size:40
Alignment explanation
Indices: 84065059--84065275 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
84065049 TGGATGATAA
* * * *
84065059 CCGGGCTAAGTCCCAAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
84065099 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84065139 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84065179 TCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
84065219 CCGGGCTATGTCCCGAAGGCA-TTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
84065258 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84065276 TACTTGGCTT
Statistics
Matches: 160, Mismatches: 15, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
38 15 0.09
39 16 0.10
40 129 0.81
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84073275 original size:40 final size:40
Alignment explanation
Indices: 84073219--84073475 Score: 333
Period size: 40 Copynumber: 6.5 Consensus size: 40
84073209 TGGATGATAA
* * * *
84073219 CCGGGCTAAGACCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* * *
84073259 TCGGGCTAAGTGCCGAAGGCATTTGTGCGAGTTACTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
84073299 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84073339 CC-GGCTAACTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
84073378 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* ***
84073418 CCGGGCTATGTCCCGAAGGCATTCAAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
84073458 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84073476 TACTTGGCTT
Statistics
Matches: 194, Mismatches: 20, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 54 0.28
40 140 0.72
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:84073367 original size:79 final size:79
Alignment explanation
Indices: 84073219--84073440 Score: 327
Period size: 79 Copynumber: 2.8 Consensus size: 79
84073209 TGGATGATAA
* * * * * * *
84073219 CCGGGCTAAGACCCGAAGGCATTTGCGCTAGTGACTAGTTTCGGGCTAAGTGCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGCTAAGTCCCGAAGGCATTTG
84073284 TGCGAGTTACTATAC
65 TGCGAGTTACTATAC
*
84073299 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAACTCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGT
*
84073364 GCGAGTTACTATAT
66 GCGAGTTACTATAC
* *
84073378 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAAGTCCCGAAGGCATT
84073441 CAAGCGAGTA
Statistics
Matches: 129, Mismatches: 12, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
79 78 0.60
80 51 0.40
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGCTAAGTCCCGAAGGCATTTGT
GCGAGTTACTATAC
Found at i:84073433 original size:119 final size:119
Alignment explanation
Indices: 84073222--84073475 Score: 343
Period size: 119 Copynumber: 2.1 Consensus size: 119
84073212 ATGATAACCG
* * * *
84073222 GGCTAAGA-CCCGAAGGCATTTGCGCTAGTGACTAGTTTCGGGCTAAGTGCCGAAGGCATTTGTG
1 GGCTAA-ATCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGTG
***
84073286 CGAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
65 CGAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTCAAGCGAG-TAGCTATATCC
* * *
84073341 GGCTAACTCCCGAAGGCATTTGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTGGTG
1 GGCTAAATCCCGAAGGCATTTGCGCGAGTGACTAGT-TCCGGGCTAAGTCCCGAAGGCATTGGTG
* *
84073405 CGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCAAGCGAGTAGCTATATCC
65 CGAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTCAAGCGAGTAGCTATATCC
*
84073460 GGTTAAATCCCGAAGG
1 GGCTAAATCCCGAAGG
84073476 TACTTGGCTT
Statistics
Matches: 118, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
118 3 0.03
119 115 0.97
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (119 bp):
GGCTAAATCCCGAAGGCATTTGCGCGAGTGACTAGTTCCGGGCTAAGTCCCGAAGGCATTGGTGC
GAGTTACTATACCCGGGCTAAGTCCCGAAGGCATTCAAGCGAGTAGCTATATCC
Found at i:84073471 original size:79 final size:80
Alignment explanation
Indices: 84073219--84073475 Score: 324
Period size: 79 Copynumber: 3.2 Consensus size: 80
84073209 TGGATGATAA
* * * * * * *
84073219 CCGGGCTAAGACCCGAAGGCATTTGCGCTAGTGACTAGT-TTCGGGCTAAGTGCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-TATCCGGGCTAAGTCCCGAAGGCATTT
*
84073283 GTGCGAGTTACTATAC
65 GTGCGAGTTACTATAT
* *
84073299 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC-GGCTAACTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
84073363 TGCGAGTTACTATAT
66 TGCGAGTTACTATAT
* **
84073378 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTATGTCCCGAAGGCATTCA
1 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
84073443 AGCGAG-TAGCTATAT
66 TGCGAGTTA-CTATAT
* *
84073458 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
84073476 TACTTGGCTT
Statistics
Matches: 158, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
79 92 0.58
80 66 0.42
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGTTACTATAT
Found at i:84088401 original size:49 final size:50
Alignment explanation
Indices: 84088327--84088423 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 50
84088317 GTTCCATTGA
84088327 ATCCTTAAATTATTGCGAGACAGGCTAACTTAGGCGTTTTTGAGCGAAGG
1 ATCCTTAAATTATTGCGAGACAGGCTAACTTAGGCGTTTTTGAGCGAAGG
* * *
84088377 ATCCTT-AATTGTTGCGAGATAGGCTGACTTAGGCGTTTTTGAGCGAA
1 ATCCTTAAATTATTGCGAGACAGGCTAACTTAGGCGTTTTTGAGCGAA
84088424 AGAACGCTTG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
49 38 0.86
50 6 0.14
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.32
Consensus pattern (50 bp):
ATCCTTAAATTATTGCGAGACAGGCTAACTTAGGCGTTTTTGAGCGAAGG
Found at i:84091159 original size:5 final size:5
Alignment explanation
Indices: 84091124--84091157 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
84091114 TTCAATTTTC
* *
84091124 TGCCG TGCCG TGCCG TGCCG TGCCA TGCCA TGCC
1 TGCCG TGCCG TGCCG TGCCG TGCCG TGCCG TGCC
84091158 ATACTTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.06, C:0.41, G:0.32, T:0.21
Consensus pattern (5 bp):
TGCCG
Found at i:84096895 original size:58 final size:59
Alignment explanation
Indices: 84096804--84096924 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
84096794 CCCTCCCTAA
* *
84096804 TCCCAAAAGATAGAATTCGGATACCGTTACATGTTCGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGATAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* * *
84096863 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGATAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
84096921 TCCC
1 TCCC
84096925 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGATAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:84097368 original size:24 final size:24
Alignment explanation
Indices: 84097320--84097373 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
84097310 CCGGTTAGGT
*
84097320 TCCCGGCGGCGCTCCGGCAATCCA
1 TCCCGGCGGCGCTCCGGCAAGCCA
* **
84097344 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCGGCGCTCCGGCAAGCCA
84097368 TCCCGG
1 TCCCGG
84097374 AATATCGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.09, C:0.43, G:0.33, T:0.15
Consensus pattern (24 bp):
TCCCGGCGGCGCTCCGGCAAGCCA
Found at i:84097653 original size:42 final size:39
Alignment explanation
Indices: 84097560--84098216 Score: 442
Period size: 42 Copynumber: 16.9 Consensus size: 39
84097550 CACATTGCTG
* * * *
84097560 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGAC
1 CTTGGTCGTGC-GGAGCCTCGG-CACCATCGGC-ACCTA-GCC
* *
84097603 GTTTGTCGTGCAGGAGCCTCGGGCACCATCGGCACCTAGCCC
1 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGCACCTAG-CC
* * * **
84097645 CTTGGTCGTGCGGGAGCCTCGGGTACCACCGGCACCTTGGTG
1 CTTGGTCGTGC-GGAGCCTC-GGCACCATCGGCACC-TAGCC
*
84097687 CTTGGAT-GTGCGGGAGCCTGGGGCACCATCGGCAACCTAGGCC
1 CTTGG-TCGTGC-GGAGCCT-CGGCACCATCGGC-ACCTA-GCC
* ** **
84097730 CCTGGTCGCACGGGAGCCTCGATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGC-GGAGCCTCGGCACCATCGGC-ACCTA-GCC
* * * *
84097772 CTTGTTCGTGCGAGAGCCTCGGGCACCATCAGAAGCTAGGCC
1 CTTGGTCGTGCG-GAGCCTC-GGCACCATCGGCACCTA-GCC
*
84097814 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCGGCAGGCC
1 CTTGGTCGTGCG-GAGCCTC-GGCACCATCGG---C-A---CC--TA-GCC
*
84097865 CTTGGTCGTGCGGAGCCTCGGCACCATCGG-ACCTAGGC
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGCC
*
84097903 C-TGGTC--G-GGAG-CT--G-A-CATC-GCAACCTAGGC
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGC-ACCTAGCC
*
84097933 C-TGGTCGTGCGGAG-CTCGGCACCATCGGCACCTAGGC
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGCC
84097970 CTTGGTCGTGCGGAGCCTCGGCACCATC-GCACCTAGGCC
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTA-GCC
84098009 C-TGGTC-TGCGGGAGCCTCGG---CATC-GCACCTAG-C
1 CTTGGTCGTGC-GGAGCCTCGGCACCATCGGCACCTAGCC
84098042 C-T-GTCGTGC-GAGCCTCGG-ACCATC-G---CTAG-C
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGCC
*
84098072 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGGC
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGCC
84098111 CTTGGAT-GTGCGGAGCCTCGGCACCATCGGCAACCTAGCC
1 CTTGG-TCGTGCGGAGCCTCGGCACCATCGGC-ACCTAGCC
84098151 C-T-GTCGTGCGGAGCCTCGGCACCATC-GCACCTAG--
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGCC
*
84098185 CTTGAT-GTGCGGA-CCTC-GC-CCATCGGCACCTA
1 CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTA
84098217 CTTGTGCGGA
Statistics
Matches: 517, Mismatches: 46, Indels: 112
0.77 0.07 0.17
Matches are distributed among these distances:
28 1 0.00
29 4 0.01
30 21 0.04
31 11 0.02
32 16 0.03
33 37 0.07
34 16 0.03
35 22 0.04
36 8 0.02
37 24 0.05
38 66 0.13
39 47 0.09
40 9 0.02
41 4 0.01
42 138 0.27
43 53 0.10
44 3 0.01
46 1 0.00
49 12 0.02
50 7 0.01
51 17 0.03
ACGTcount: A:0.15, C:0.35, G:0.32, T:0.18
Consensus pattern (39 bp):
CTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGCC
Found at i:84097746 original size:127 final size:127
Alignment explanation
Indices: 84097547--84097856 Score: 320
Period size: 127 Copynumber: 2.4 Consensus size: 127
84097537 GCGGGAGCAT
* * * * * * * * ** * *
84097547 CGGCACATTGCTGCTTGGACGTGCTGGAGCCTTGGACGCCATCGGCAACCTAGGACGTTTGTCGT
1 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGC
* * * *
84097612 GCAGGAGCCTCGGGCACCATCGGC-ACCTAGCCCCTTGGTCGTGCGGGAGCCTCGGGTACCAC
66 ACAGGAGCCTC-GACACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCAC
*
84097674 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTGGGGCACCATCGGCAACCTAGGCCCCTGGTCGC
1 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGC
* * * * *
84097739 ACGGGAGCCTCGATACCATCGGCAACCTAGGCCCTTGTTCGTGCGAGAGCCTCGGGCACCAT
66 ACAGGAGCCTCGACACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCAC
* * * * ** *
84097801 CAGAAGCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCC
1 CGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC
84097857 GGCAGGCCCT
Statistics
Matches: 152, Mismatches: 29, Indels: 5
0.82 0.16 0.03
Matches are distributed among these distances:
126 22 0.14
127 130 0.86
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (127 bp):
CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGC
ACAGGAGCCTCGACACCATCGGCAACCTAGCCCCTTGGTCGTGCGAGAGCCTCGGGCACCAC
Found at i:84098165 original size:77 final size:70
Alignment explanation
Indices: 84098067--84098216 Score: 212
Period size: 77 Copynumber: 2.0 Consensus size: 70
84098057 CGGACCATCG
*
84098067 CTAGCCTTGGTCGTGCGGAGCCTCGGCACCATCGGCACCTAGGCCTTGGATGTGCGGAGCCTCGG
1 CTAGCCCTGGTCGTGCGGAGCCTCGGCACCATC-GCACCTA-G-CTT-GATGTGCGGA-CCTC-G
84098132 CACCATCGGCAAC
60 C-CCATCGGC-AC
84098145 CTAGCCCT-GTCGTGCGGAGCCTCGGCACCATCGCACCTAGCTTGATGTGCGGACCTCGCCCATC
1 CTAGCCCTGGTCGTGCGGAGCCTCGGCACCATCGCACCTAGCTTGATGTGCGGACCTCGCCCATC
84098209 GGCAC
66 GGCAC
84098214 CTA
1 CTA
84098217 CTTGTGCGGA
Statistics
Matches: 71, Mismatches: 1, Indels: 9
0.88 0.01 0.11
Matches are distributed among these distances:
69 5 0.07
70 8 0.11
71 2 0.03
72 4 0.06
73 10 0.14
74 3 0.04
75 1 0.01
76 7 0.10
77 24 0.34
78 7 0.10
ACGTcount: A:0.15, C:0.37, G:0.29, T:0.19
Consensus pattern (70 bp):
CTAGCCCTGGTCGTGCGGAGCCTCGGCACCATCGCACCTAGCTTGATGTGCGGACCTCGCCCATC
GGCAC
Found at i:84105670 original size:177 final size:172
Alignment explanation
Indices: 84105347--84105696 Score: 499
Period size: 177 Copynumber: 2.0 Consensus size: 172
84105337 GTAAGGAGTT
**
84105347 AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATGGCACAACGGGGGCCATGGTGGTGCGGG
1 AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATGGCACAACGGGGGCCATGGTGGTGCGAA
* * *
84105412 TGCGAGCTCCCAAGTGTTGGCGGCCCGGGCACTTGTTCAGTTTTCTGCCATGCCGTGCCATGCCA
66 TGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCT--CA-GCCGTGCCAT-CCA
*
84105477 TGCCATACTTCTTGTATTTGTTTTGGGCCAACAGAAAAAATTTCTA
127 TGCCATACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
* *
84105523 AGTTAAACACTTGGCCGTGCTGCCCCCTCGGGAAACATGGCACAACGGGGGCCGTGGTGGTGCGA
1 AGTTAAACACTTGGCCGTGCCGCCCCC-CGGGAAACATGGCACAACGGGGGCCATGGTGGTGCGA
84105588 ATGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCT-A-CCGTGCCAT-CATGC
65 ATGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTCAGCCGTGCCATCCATGC
84105650 CATATTTCGTTCGGCTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
130 CATA---C-TT---CTTGTATTTCTTTTGGGCCAACAGAAAAAATTT
84105697 TCAATTAAAA
Statistics
Matches: 158, Mismatches: 8, Indels: 15
0.87 0.04 0.08
Matches are distributed among these distances:
170 9 0.06
172 9 0.06
173 1 0.01
174 3 0.02
176 26 0.16
177 110 0.70
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.26
Consensus pattern (172 bp):
AGTTAAACACTTGGCCGTGCCGCCCCCCGGGAAACATGGCACAACGGGGGCCATGGTGGTGCGAA
TGCGAGCTCCCAACTGTTGGCGGCCCGGGCACTTGTTCAATTATCTCAGCCGTGCCATCCATGCC
ATACTTCTTGTATTTCTTTTGGGCCAACAGAAAAAATTTCTA
Found at i:84106081 original size:24 final size:24
Alignment explanation
Indices: 84106054--84106129 Score: 89
Period size: 24 Copynumber: 3.2 Consensus size: 24
84106044 CCGGTTAGGT
* *
84106054 TCCCGGTGGTGCTCCGGCGATCCA
1 TCCCAGTGGTGCTCCGGCGAGCCA
* *
84106078 TCCCAGTGGTGTTCCGACGAGCCA
1 TCCCAGTGGTGCTCCGGCGAGCCA
* **
84106102 TCTCAGCAGTGCTCCGGCGAGCCA
1 TCCCAGTGGTGCTCCGGCGAGCCA
84106126 TCCC
1 TCCC
84106130 GAAATATTGA
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.13, C:0.38, G:0.29, T:0.20
Consensus pattern (24 bp):
TCCCAGTGGTGCTCCGGCGAGCCA
Found at i:84106495 original size:41 final size:41
Alignment explanation
Indices: 84106330--84106962 Score: 528
Period size: 41 Copynumber: 15.4 Consensus size: 41
84106320 GCCTTGGACG
* * * *
84106330 CCATCGGTAACCTAGACGTTTGTCGTGCG-GAGCCTCGGACA
1 CCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
* * *
84106371 CCAT-TGCACCTAGCCCTTGGTCGTGCG-GAGCCTC-GGCA
1 CCATCGGAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * *
84106409 CCA-CCGCACCTTGGTGC-TGGAT-GTGCG-GAGCCTCGGGCA
1 CCATCGGAACCTAGG-CCTTGG-TCGTGCGAGAGCCTCGGGCA
* * **
84106448 CCATCGGTAACCTAGGCCCTGGTCGCGCGAGAGCCTC-GATA
1 CCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
84106489 CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
84106531 CCATCGGAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGAACCTAGGCC-TTGGTCGTGCGAGAGCCTCGGGCA
* *
84106573 CCATCGGAACCTAGGCCCCTGGTCGTGCG-GAGCCTCGGCCA
1 CCATCGGAACCTAGG-CCTTGGTCGTGCGAGAGCCTCGGGCA
* *
84106614 CCATCGGCAACCTAGGCCTTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * * *
84106656 CCATCGGCACCTAGGCCCTGGTCGTG-TAGGAGCTTCGGCCA
1 CCATCGGAACCTAGGCCTTGGTCGTGCGA-GAGCCTCGGGCA
*
84106697 CCATCGGTAACCTAGGCCTTGGTCGTGCTAGAGCCTC-GGCA
1 CCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
* *
84106738 CCATCGGCAACCTAGGCCTTGATCGTGCGAGAACCTC-GGCA
1 CCATCGG-AACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
* * * **
84106779 CCATCGGCACCTTGGTGCTTGGAT-GTGCG-GAGCCTCGAACA
1 CCATCGGAACCTAGG-CCTTGG-TCGTGCGAGAGCCTCGGGCA
* * * *
84106820 CCATCGACAACCTCAGCCCTTTGTCGTGCGGGAGCCTCGGGCA
1 CCATCG-GAACCT-AGGCCTTGGTCGTGCGAGAGCCTCGGGCA
* * *
84106863 CCATCGGCACCTTGGTGCCTTGGAT-GTGCG-GAGCCTCGAGCA
1 CCATCGGAACC-TAG-GCCTTGG-TCGTGCGAGAGCCTCGGGCA
* * * * * * *
84106905 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACA
1 CCATCGGAACCTAGG-CCTTGG-TCGTGCGAGAGCCTCGGGCA
*
84106947 CTATCGGCAACCTAGG
1 CCATCGG-AACCTAGG
84106963 ACGTTGGATG
Statistics
Matches: 492, Mismatches: 70, Indels: 58
0.79 0.11 0.09
Matches are distributed among these distances:
38 28 0.06
39 33 0.07
40 18 0.04
41 207 0.42
42 167 0.34
43 38 0.08
44 1 0.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (41 bp):
CCATCGGAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCA
Found at i:84106531 original size:83 final size:82
Alignment explanation
Indices: 84106330--84106962 Score: 548
Period size: 83 Copynumber: 7.7 Consensus size: 82
84106320 GCCTTGGACG
* * * * * * * *
84106330 CCATCGGTAACCTAGACGTTTGTCGTGCG-GAGCCTCGGACACCAT-TGCACCTAGCCCTTGGTC
1 CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCTTGGTC
*
84106393 GTGCG-GAGCCTCGGCA
66 GTGCGAGAGCCTCGACA
* * * *
84106409 CCA-CCGC-ACCTTGGTGC-TGGAT-GTGCG-GAGCCTCGGGCACCATCGGTAACCTAGGCCCTG
1 CCATCGGCAACCTAGG-CCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCTTG
* *
84106469 GTCGCGCGAGAGCCTCGATA
63 GTCGTGCGAGAGCCTCGACA
84106489 CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCATTGGT
1 CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCC-TTGGT
*
84106554 CGTGCGAGAGCCTCGGGCA
65 CGTGCGAGAGCCTC-GACA
* *
84106573 CCATCGG-AACCTAGGCCCCTGGTCGTGCG-GAGCCTCGGCCACCATCGGCAACCTAGGCCTTGG
1 CCATCGGCAACCTAGG-CCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGGCCTTGG
* *
84106636 TCGTGCGGGAGCCTCGGCCA
64 TCGTGCGAGAGCCTC-GACA
* * * *
84106656 CCATCGGC-ACCTAGGCCCTGGTCGTG-TAGGAGCTTCGGCCACCATCGGTAACCTAGGCCTTGG
1 CCATCGGCAACCTAGGCCTTGGTCGTGCGA-GAGCCTCGGGCACCATCGG-AACCTAGGCCTTGG
* *
84106719 TCGTGCTAGAGCCTCGGCA
64 TCGTGCGAGAGCCTCGACA
* * * * *
84106738 CCATCGGCAACCTAGGCCTTGATCGTGCGAGAACCTC-GGCACCATCGGCACCTTGGTGCTTGGA
1 CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGG-CCTTGG-
84106802 T-GTGCG-GAGCCTCGAACA
64 TCGTGCGAGAGCCTCG-ACA
* * * * * *
84106820 CCATCGACAACCTCAGCCCTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTG
1 CCATCGGCAACCT-AGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACC-TAG-GCCTTG
84106885 GAT-GTGCG-GAGCCTCGAGCA
63 G-TCGTGCGAGAGCCTCGA-CA
* * * * * * *
84106905 GCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACTATCGGCAACCTAGG
1 CCATCGGCAACCTAGG-CCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGG-AACCTAGG
84106963 ACGTTGGATG
Statistics
Matches: 462, Mismatches: 62, Indels: 56
0.80 0.11 0.10
Matches are distributed among these distances:
77 27 0.06
78 4 0.01
79 20 0.04
80 12 0.03
81 19 0.04
82 79 0.17
83 186 0.40
84 81 0.18
85 33 0.07
86 1 0.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (82 bp):
CCATCGGCAACCTAGGCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCTTGGTC
GTGCGAGAGCCTCGACA
Found at i:84114382 original size:46 final size:46
Alignment explanation
Indices: 84114315--84114489 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
84114305 TGTAACCCGC
*
84114315 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* *
84114361 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
84114411 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCAGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
84114454 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG
84114490 ATGCTCAACC
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 26 0.24
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:84114449 original size:93 final size:93
Alignment explanation
Indices: 84114322--84114493 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
84114312 CGCCCATAAG
* *
84114322 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84114387 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
84114415 CGAACTCGGACTCAACTCAATGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
84114480 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84114494 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:84119899 original size:24 final size:23
Alignment explanation
Indices: 84119871--84119915 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
84119861 ATATTACCTT
*
84119871 GCTTCTGCTCAAGAAATTCTTTAC
1 GCTTCTGATCAAGAAA-TCTTTAC
*
84119895 GCTTCTGATCAATAAATCTTT
1 GCTTCTGATCAAGAAATCTTT
84119916 CACTAATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (23 bp):
GCTTCTGATCAAGAAATCTTTAC
Found at i:84122009 original size:93 final size:93
Alignment explanation
Indices: 84121896--84122067 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
84121886 CGCCCATAAG
* *** * *
84121896 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGTATCCATAAGTGAACTCAGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGAATCAACTCA
84121961 ACGAGTTCGGATGCCTAATTACATCTCA
66 ACGAGTTCGGATGCCTAATTACATCTCA
* *
84121989 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGAATCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGAATCAACTCA
84122054 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
84122068 TCAACCATCC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGAATCAACTCA
ACGAGTTCGGATGCCTAATTACATCTCA
Found at i:84122083 original size:46 final size:45
Alignment explanation
Indices: 84121889--84122075 Score: 157
Period size: 46 Copynumber: 4.1 Consensus size: 45
84121879 TGTAACCCGC
* * * * *
84121889 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-TAA
*
84121935 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGC-CTAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCTAA
* * * * * * *
84121979 TTACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGC-AT
1 --CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTC-G-GATGCTCTAA
*
84122028 CCATAAGTGAACTCGGAATCAACTCAACGAGTTCGGATGCTC-AA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCTAA
84122072 CCAT
1 CCAT
84122076 CCTAGTGACA
Statistics
Matches: 112, Mismatches: 21, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
44 11 0.10
45 4 0.04
46 62 0.55
47 27 0.24
48 3 0.03
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCTAA
Found at i:84131387 original size:58 final size:58
Alignment explanation
Indices: 84131295--84131416 Score: 181
Period size: 58 Copynumber: 2.1 Consensus size: 58
84131285 TCCCTCCCCT
* * *
84131295 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAATC
1 ATCCC-AATGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
* * *
84131354 GTCCCAATGGTAGGATTCAGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATC
1 ATCCCAATGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
84131412 ATCCC
1 ATCCC
84131417 TGTCCCTCCC
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 52 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.25
Consensus pattern (58 bp):
ATCCCAATGGTAGAATTCAGATACCGTTACATGTCCGGTACCCAACAATGAATGAATC
Found at i:84131936 original size:18 final size:19
Alignment explanation
Indices: 84131913--84131960 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
84131903 TTCCTCCTGA
84131913 TTTATTTTCTTTGG-TTCC
1 TTTATTTTCTTTGGTTTCC
*
84131931 TTTATTTTATTTGGTTTCC
1 TTTATTTTCTTTGGTTTCC
84131950 TGTT-TTTTCTT
1 T-TTATTTTCTT
84131961 GTTTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 13 0.50
19 11 0.42
20 2 0.08
ACGTcount: A:0.06, C:0.12, G:0.10, T:0.71
Consensus pattern (19 bp):
TTTATTTTCTTTGGTTTCC
Done.