Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 263 of 295
Found at i:84137454 original size:24 final size:24
Alignment explanation
Indices: 84137413--84137480 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
84137403 GGTTCCCGAT
* * * *
84137413 GGTGCTCCAGTGATCCATCTAGGC
1 GGTGCTCCGGCGAGCCATCCAGGC
*
84137437 GGTGCTCCGGCGAGCCATCCCGGC
1 GGTGCTCCGGCGAGCCATCCAGGC
84137461 GGTGCTCCGGCGAGCCATCC
1 GGTGCTCCGGCGAGCCATCC
84137481 CAGAATATCG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.12, C:0.37, G:0.34, T:0.18
Consensus pattern (24 bp):
GGTGCTCCGGCGAGCCATCCAGGC
Found at i:84137481 original size:24 final size:24
Alignment explanation
Indices: 84137434--84137481 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
84137424 GATCCATCTA
84137434 GGCGGTGCTCCGGCGAGCCATCCC
1 GGCGGTGCTCCGGCGAGCCATCCC
84137458 GGCGGTGCTCCGGCGAGCCATCCC
1 GGCGGTGCTCCGGCGAGCCATCCC
84137482 AGAATATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.08, C:0.42, G:0.38, T:0.12
Consensus pattern (24 bp):
GGCGGTGCTCCGGCGAGCCATCCC
Found at i:84141039 original size:58 final size:59
Alignment explanation
Indices: 84140947--84141068 Score: 176
Period size: 58 Copynumber: 2.1 Consensus size: 59
84140937 TCCCTCCCCA
* *
84140947 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGT-TCGGTACCCAATAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCT-GATACCCAACAATGAATGAATC
* * *
84141006 ATCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCTGATACCCAACAATGAATGAATC
1 ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCTGATACCCAACAATGAATGAATC
84141064 ATCCC
1 ATCCC
84141069 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
58 51 0.89
59 6 0.11
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (59 bp):
ATCCCAAAAGGTAGAATTCAGATACCGTTACATGTCTGATACCCAACAATGAATGAATC
Found at i:84141491 original size:24 final size:24
Alignment explanation
Indices: 84141463--84141512 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
84141453 CCGGTTAGGT
*
84141463 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCAGTGCTCCGGTGAGCCA
84141487 TCCCGGCAGTGCTCCGGTGAGCCA
1 TCCCGGCAGTGCTCCGGTGAGCCA
84141511 TC
1 TC
84141513 TCGGAATATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.10, C:0.38, G:0.34, T:0.18
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGTGAGCCA
Found at i:84141713 original size:42 final size:42
Alignment explanation
Indices: 84141628--84142626 Score: 766
Period size: 42 Copynumber: 23.7 Consensus size: 42
84141618 TGGACGTACT
* * * * *
84141628 GGAGCCTTGGACACCATCGGCAACCTAGGACGTTTGTCGTGCG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* *
84141671 GGAGCCTCGGGCACCATCGGCACCTAGCCCCTTGGTCATGCG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * **
84141713 GGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* * ** * *
84141755 GCAGCCTCGGGCACCATCGGCAACCTAGACCCCCGGTCGCGCA
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
** * *
84141798 GGAGCCTC-GATACCATCGGCAACCTAGGCCCTTGGTCTTACG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * * *
84141840 AGAGCCTCGGGCACAATCGGAACCTAGGCCCTTGATACTTGGATGTGCG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGT-C------GTGCG
* *
84141889 GGCGCCTCGGGCACCATCGGCACCTAGG-CCTCTGGTCGTGGG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCT-TGGTCGTGCG
* * * * **
84141931 GGAGCCTCGGCCACCATCGGCACTTAGGCCCCTGGTCTTGTA
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * * ** *
84141973 GGAGCTTCGGCCACCATCGGTAACCTAGGCCCTTCATTGTGCG
1 GGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCG
* * *
84142016 AGAGCCTCGGGCACTATCGGCACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
84142058 GGAGCCTCGGGCACCATCGG---C-A---CCTT-G--GTGCG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * *
84142090 GGAGCCTCGGGCACCATCGGAAACCTAGGCCCCTGGTCGTGCT
1 GGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCG
* *
84142133 GGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTCGTGCG
* *
84142176 AGAGCCTCGAG-ACCATCGGCACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
* * *
84142217 GGAGCCTCGGCCACCATCGTCACCTAGGCCCTTGGAT-GTACG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* *
84142259 GGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
*
84142302 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* * * * *
84142344 AGAACCTCGGGCACCATCGGCAACCTAGG-CCTTGATTGTGCA
1 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
* ** * * ** *
84142386 AGAATCTCGGGCACCATCGACACCTTGGTGCTTGGAT-GTACG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
** *
84142428 GGAGCCTCGAACACCATCGGCAACCTCA-GCCCTTGGTTGTGCG
1 GGAGCCTCGGGCACCATCGGC-ACCT-AGGCCCTTGGTCGTGCG
* * * * *
84142471 AGAGCCTCAGGCACCATCGGCACCTTGGTGCCTTGGAT-GTGCA
1 GGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCG
* * * * * * * **
84142514 AGAGCCTCGAGCAGCATTGGTACGTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TCGTGCG
* * * *
84142556 GGAGCCTCGAGCAGCATTC-GCACCTTGGCGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCA-TCGGCACCTAGGCCCTTGG-TCGTGCG
* *
84142598 GGAGCCTCGGACACCATCAGCAACCTAGG
1 GGAGCCTCGGGCACCATCGGC-ACCTAGG
84142627 ATGTTGGATG
Statistics
Matches: 771, Mismatches: 145, Indels: 80
0.77 0.15 0.08
Matches are distributed among these distances:
32 24 0.03
34 1 0.00
35 4 0.01
36 1 0.00
37 1 0.00
38 1 0.00
39 1 0.00
40 3 0.00
41 38 0.05
42 416 0.54
43 246 0.32
44 1 0.00
48 4 0.01
49 30 0.04
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (42 bp):
GGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCGTGCG
Found at i:84141802 original size:127 final size:125
Alignment explanation
Indices: 84141628--84142522 Score: 732
Period size: 127 Copynumber: 7.1 Consensus size: 125
84141618 TGGACGTACT
* * * ** * *
84141628 GGAGCCTTGGACACCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCATCGGCA
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCA
* * * **
84141693 CCTAGCCCCTTGGTCATGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGGATGTGC
66 CCTAG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGC
* * * **
84141754 GGCAGCCTCGGGCACCATCGGCAACCTAGACCCCCGGTCGCGCAGGAGCCTC-GATACCATCGGC
1 GG-AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGC
* * * * *
84141818 AACCTAGGCCCTTGGTCTTACGAGAGCCTCGGGCACAATCGGAACCTAGGCCCTTGATACTTGGA
65 -ACCTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CC------CTTGGA
84141883 TGTGC
121 TGTGC
* * ** *
84141888 GGGCGCCTCGGGCACCATCGGC-ACCTAGGCCTCTGGTCGTGGGGGAGCCTCGGCCACCATCGGC
1 -GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGC
* * * ** * * * *
84141952 ACTTAGGCCCCTGGTCTTGTAGGAGCTTCGGCCACCATCGGTAACCTAGGCCCTT-CATTGTGC
65 ACCTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGA-TGTGC
* *
84142015 GAGAGCCTCGGGCACTATCGGC-ACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCGG-
1 G-GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGC
* *
84142078 --C-A--CCTT-G--GTGCGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCCTGG-TCGTGC
65 ACCTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGAT-GTGC
* * * *
84142132 TGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGC-GAGAGCCTCGAG-ACCATCGG
1 -GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAG-GAGCCTCGGGCACCATCGG
* * *
84142195 CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGTCACCTAGGCCCTTGGATGTAC
64 CACCTA-GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGC
* *
84142258 GGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 -GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGC
* * * *
84142323 AACCTAGGCCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTT-GATTGTGC
65 -ACCTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGA-TGTGC
* ** * * ** * * * **
84142385 AAGAATCTCGGGCACCATCGAC-ACCTTGGTGCTTGGAT-GTACGGGAGCCTCGAACACCATCGG
1 -GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG-TCGTGCAGGAGCCTCGGGCACCATCGG
* * * * *
84142448 CAACCTCAGCCCTTGGTTGTGCGAGAGCCTCAGGCACCATCGGCACCTTGGTGCCTTGGATGTGC
64 C-ACCT-AGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGGATGTGC
*
84142513 AAGAGCCTCG
1 -GGAGCCTCG
84142523 AGCAGCATTG
Statistics
Matches: 628, Mismatches: 100, Indels: 80
0.78 0.12 0.10
Matches are distributed among these distances:
116 1 0.00
117 62 0.10
118 30 0.05
119 1 0.00
120 4 0.01
121 1 0.00
123 1 0.00
124 4 0.01
125 1 0.00
126 123 0.20
127 262 0.42
128 30 0.05
129 2 0.00
133 57 0.09
134 47 0.07
135 2 0.00
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.18
Consensus pattern (125 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCA
CCTAGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGATGTGC
Found at i:84142296 original size:169 final size:167
Alignment explanation
Indices: 84141626--84142626 Score: 942
Period size: 169 Copynumber: 5.9 Consensus size: 167
84141616 CTTGGACGTA
* * * * *
84141626 CTGGAGCCTTGGACACCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCATCGG
1 CTGGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
* * * * *
84141691 CACCTAGCCCCTTGGTCATGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGGATGTGCGG
65 CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC-GCACCTAGG-CCTTGGATGTGCGG
* * * *
84141756 CAGCCTCGGGCACCATCGGCAACCTAGACCCCCGGTCGCG
128 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG
* ** * * * *
84141796 CAGGAGCCTCGATACCATCGGCAACCTAGGCCCTTGGTCTTACGAGAGCCTCGGGCACAATCGGA
1 CTGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
* *
84141861 ACCTAGGCCCTTGATACTTGGATGTGCGGGCGCCTCGGGCACCATCGGCACCTAGGCCTCTGG-T
66 ACCTAGGCCCTTGGT-C------GTGCGGGAGCCTCGGGCACCATC-GCACCTAGGCCT-TGGAT
* * * *
84141925 CGTGGGGGAGCCTCGGCCACCATCGGC-ACTTAGGCCCCTGGTCTTG
122 -GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG
* * ** * *
84141971 -TAGGAGCTTCGGCCACCATCGGTAACCTAGGCCCTTCATTGTGCGAGAGCCTCGGGCACTATCG
1 CT-GGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCG
* *
84142035 GCACCTAGGCCCTTGGTCGTGCAGGAGCCTCGGGCACCATCG--GC-A--CCTT-G--GTGCGGG
64 GCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGCACCTAGGCCTTGGATGTGCGGG
*
84142092 AGCCTCGGGCACCATCGGAAACCTAGGCCCCTGGTCGTG
129 AGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG
* *
84142131 CTGGAGCCTCAGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGAG-ACCATCGG
1 CTGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
* *
84142195 CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGTCACCTAGGCCCTTGGATGTACGG
65 CACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-CACCTAGG-CCTTGGATGTGCGG
*
84142260 GAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGGTCGTG
128 GAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG
* * *
84142300 CGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGG
1 CTGGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGG
* * ** ** * * *
84142364 CAACCTAGG-CCTTGATTGTGCAAGAATCTCGGGCACCATCGACACCTTGGTGCTTGGATGTACG
65 C-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCG-CACCTAGG-CCTTGGATGTGCG
** * *
84142428 GGAGCCTCGAACACCATCGGCAACCTCA-GCCCTTGGTTGTG
127 GGAGCCTCGGGCACCATCGGCAACCT-AGGCCCCTGGTCGTG
* * * * *
84142469 C-GAGAGCCTCAGGCACCATCGGC-ACCTTGGTGCCTTGGAT-GTGCAAGAGCCTCGAGCAGCAT
1 CTG-GAGCCTC-GGCACCATCGGCAACCTAGG-CCCTTGG-TCGTGCGAGAGCCTCGGGCACCAT
* * * * ** * * *
84142531 TGGTACGTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGCAGCATTCGCACCTTGGCGCTTGGATGT
62 CGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA-TCGCACCTAGGC-CTTGGATGT
* *
84142595 GCGGGAGCCTCGGACACCATCAGCAACCTAGG
124 GCGGGAGCCTCGGGCACCATCGGCAACCTAGG
84142627 ATGTTGGATG
Statistics
Matches: 690, Mismatches: 105, Indels: 72
0.80 0.12 0.08
Matches are distributed among these distances:
159 69 0.10
160 63 0.09
161 4 0.01
162 2 0.00
163 4 0.01
165 1 0.00
166 5 0.01
167 1 0.00
168 29 0.04
169 262 0.38
170 106 0.15
171 5 0.01
175 26 0.04
176 113 0.16
ACGTcount: A:0.17, C:0.33, G:0.31, T:0.19
Consensus pattern (167 bp):
CTGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGC
ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGCACCTAGGCCTTGGATGTGCGGGAG
CCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTG
Found at i:84142634 original size:85 final size:83
Alignment explanation
Indices: 84142085--84142653 Score: 374
Period size: 85 Copynumber: 6.7 Consensus size: 83
84142075 CGGCACCTTG
* * * * *
84142085 GTGCGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCCTGG-TCGTGCTGGAGCCTC-AGGCACC
1 GTGCGGGAGCCTCGGACACCATCAGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGA-GCACC
* * *
84142148 ATCGGTAACCTAGGCCCTTGG-T
63 ATC-G-CACCTTGGCGCTTGGAT
* * *
84142170 CGTGCGAGAGCCTC-GAGACCATCGGC-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-GCCAC
1 -GTGCGGGAGCCTCGGACACCATCAGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAG-CAC
* *
84142231 CATCGTCACCTAGGCCCTTGGAT
62 CATCG-CACCTTGGCGCTTGGAT
* * * *
84142254 GTACGGGAGCCTCGGGCACCATCAGCAACCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGGACACCATCAGCAACCTAGG-CCTTGGAT-GTGCGGGAGCCTCGAGCACCA
*
84142318 TCGGCAACCTAGGC-CTT-GAT
64 TC-GC-ACCTTGGCGCTTGGAT
* * * * ** ** *
84142338 CGTGCGAGAACCTCGGGCACCATCGGCAACCTAGGCCTT-GATTGTGCAAGAATCTCGGGCACCA
1 -GTGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCTTGGA-TGTGCGGGAGCCTCGAGCACCA
*
84142402 TCGACACCTTGGTGCTTGGAT
64 TCG-CACCTTGGCGCTTGGAT
* * * * * *
84142423 GTACGGGAGCCTCGAACACCATCGGCAACCTCAGCCCTTGGTTGTGCGAGAGCCTC-AGGCACCA
1 GTGCGGGAGCCTCGGACACCATCAGCAACCT-AGGCCTTGGATGTGCGGGAGCCTCGA-GCACCA
*
84142487 TCGGCACCTTGGTGCCTTGGAT
64 TC-GCACCTTGGCG-CTTGGAT
** * * ** * * * *
84142509 GTGCAAGAGCCTC-GAGCAGCAT-TGGTACGTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGGA-CACCATCAGCAACCTAGG-CCTTGGATGTGCGGGAGCCTCGAGCACCA
84142572 TTCGCACCTTGGCGCTTGGAT
64 -TCGCACCTTGGCGCTTGGAT
** * *
84142593 GTGCGGGAGCCTCGGACACCATCAGCAACCTAGGATGTTGGATGTGTGGGTGCCTCGAGCA
1 GTGCGGGAGCCTCGGACACCATCAGCAACCTAGG-CCTTGGATGTGCGGGAGCCTCGAGCA
84142654 GCAGGGGCAC
Statistics
Matches: 394, Mismatches: 64, Indels: 51
0.77 0.13 0.10
Matches are distributed among these distances:
83 36 0.09
84 123 0.31
85 186 0.47
86 49 0.12
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (83 bp):
GTGCGGGAGCCTCGGACACCATCAGCAACCTAGGCCTTGGATGTGCGGGAGCCTCGAGCACCATC
GCACCTTGGCGCTTGGAT
Found at i:84153842 original size:43 final size:41
Alignment explanation
Indices: 84153678--84153858 Score: 168
Period size: 42 Copynumber: 4.2 Consensus size: 41
84153668 AAATAGGCCC
* *
84153678 GTGCGGG-GCCTC-GGCACCATCGGCCCTTGGTGGCATCGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGCACTTGGT-GC-TAGGAT
* * *
84153719 GGTGGCGGTGCGAGCCTCGGGCAGCATCGGCACTCGGTGGCTAGGAG
1 -GT-GC-G-G-GAGCCTCGGGCACCATCGGCACTTGGT-GCTAGGAT
* *
84153766 GTGCGGGAGCCTCGGACACCATCGGCAACTTGGTGCTTGGAT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACTTGGTGCTAGGAT
*
84153808 GTGCGGGAGCCTCGGGCACCCATCGGCACCTTGGTGCCTGGGAT
1 GTGCGGGAGCCTCGGGCA-CCATCGGCA-CTTGGTG-CTAGGAT
84153852 GTGCGGG
1 GTGCGGG
84153859 CTAAAGAAGA
Statistics
Matches: 117, Mismatches: 12, Indels: 18
0.80 0.08 0.12
Matches are distributed among these distances:
42 44 0.38
43 24 0.21
44 15 0.13
45 3 0.03
46 3 0.03
47 9 0.08
48 19 0.16
ACGTcount: A:0.12, C:0.28, G:0.41, T:0.18
Consensus pattern (41 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACTTGGTGCTAGGAT
Found at i:84161842 original size:42 final size:41
Alignment explanation
Indices: 84161737--84161866 Score: 138
Period size: 42 Copynumber: 3.0 Consensus size: 41
84161727 GAGCCTCCAT
*
84161737 CACCTTGGTGGCTCGGATGTGTGGGAGCCTC-AGCCACCATCCGG
1 CACCTTGGT-GCT-GGATGTGCGGGAGCCTCGAG-CACCAT-CGG
* *
84161781 TAACCTTGATGCTTGGATGTGCGGGAGCCTCGAGCACCATCGG
1 -CACCTTGGTGC-TGGATGTGCGGGAGCCTCGAGCACCATCGG
* *
84161824 CACCTTGGTGCATGGATGTGCGGGAGCATCGA-CACCACCGG
1 CACCTTGGTGC-TGGATGTGCGGGAGCCTCGAGCACCATCGG
84161865 CA
1 CA
84161867 AACTAGGCCC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 10 0.13
42 28 0.37
43 3 0.04
44 24 0.32
45 10 0.13
ACGTcount: A:0.18, C:0.29, G:0.33, T:0.20
Consensus pattern (41 bp):
CACCTTGGTGCTGGATGTGCGGGAGCCTCGAGCACCATCGG
Found at i:84178124 original size:42 final size:43
Alignment explanation
Indices: 84178027--84180331 Score: 2149
Period size: 42 Copynumber: 54.5 Consensus size: 43
84178017 CCTTGCAGCT
* * * * *
84178027 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGTCGATGGTGTC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
84178070 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * *
84178112 CGAGGCTCCCGCAC-ATCCAAGGTACCAAGGTGCCGTTGGTACC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTGCCGATGGTGCC
* **
84178155 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** *
84178198 CGAGGGTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* *
84178240 CGA-GCTTCTCGCACGAT-CAA-GGCCTAGGTTACCGATGGTGCC
1 CGAGGC-TCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84178282 AGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
84178325 CGAGGCTCCTGCA-TATCCAAGGGCCTAGGTGTCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84178367 CGAGGCTCCCGCAGGA-CCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
**
84178408 CGAGGCTCTTGCACGAT-CAAGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
84178451 CGAGGTTCCCACACGA-CCACGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
** * * * *
84178494 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84178536 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGCTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTGCCGATGGTGCC
* * **
84178579 CGAGCCTCCCGCACGAT-CAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * ** *
84178622 TGAGGCCCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84178664 CGAGGTTCTCACACGAT-CAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84178706 CGAGGTTCTCGCACGAT-CAAGGG-CTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84178748 AGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
84178791 CGAGGCTCCTGCAC-ATCTAAGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
**
84178833 CGAGGCTCCATCACGA-CCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84178874 CGTGGCTCTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * * * *
84178917 CGAAGTTCCCGCACGA-CCAGGGGCCTAGGTTACCGTTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
** * * *
84178960 CGAGGCT-CCGCAC-ATCCAAGCACCAATGTGCCGATGGTACC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84179001 CGAGGCTCCCGCACGA-CTAAGGGCCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84179043 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * ** * * *
84179086 CAAAGCTCCTACATGA-CCAGGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84179128 CGAGGCTCCCGCACGA-CCAAGCGTCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * ** * *
84179171 CGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTCTAATAGTACC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* *
84179213 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* **
84179255 CGAGGCTCTCGCACGA-CCAAGGGCCTAGGTTGCCGATGGT-AT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * *
84179297 TGAGGCTCCTACGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * *
84179340 CGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGGTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
** * * * *
84179382 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84179424 TGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGG-GCCTAGGTGCCGATGGTGCC
* **
84179467 CGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
*** *
84179510 CGAGGCTCCCGCAC-ATCCAACCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84179552 CGAGGTTCTCGCACGAT-CAA-GGCCTAGGTTTCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84179594 CGAGGTTCTCGCACGAT-CAA-GGCCTAGGATGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84179636 CGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGGTGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84179679 CGAGGCTCCCGTAC-ATCCAAGGGCCTAGGTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84179721 CGAGGCT-CCGTACGA-CCAAGGGCCTAGGTGCCGATGGT-CC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84179761 CGAGGCTCTCGCACGA-CCAA-GGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
84179803 CGAGGCTCCCGTACGA-CCAGGGGCCTAGGTTGCTGATGCTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * ** *
84179846 TGAGGCTCTCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84179888 CGAGGCTCCCGC-CGA-CCAAGGGCCTAGGTGCCGATGGTACC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * *
84179929 CGAGTCTCTCGCATGA-CCAAGGGGCTAGGTTGCCGATGGTGGC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * * *
84179972 CGAAGCTCCTACATGA-CCAGGGGCCTAGGTGCCGATGGTGAC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* *
84180014 CGAGGCTTCCGCACGA-CCAAGTGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * *
84180057 CAAGGCTCTCGCACGA-CCAAGGGCCTAGGTTCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * **
84180099 CGAGGCTCTCGCATGA-CCAAGGGCCTAGGTTGTCGATGGT-AT
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84180141 CGAGGCTCCCGCGCGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
** * * *
84180184 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGGTGGCGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84180226 CGAGGCTCCCGCACGA-CCAAGGGGCTAGGTGCCGATGGTGCC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * * *
84180268 CGAGGCTCTCGCACGA-CAAACGTCCTAGGTTGCCGATGGCGTC
1 CGAGGCTCCCGCACGATCCAAGGGCCTAGG-TGCCGATGGTGCC
* *
84180311 CAAGGCTCCAGCACG-TCCAAG
1 CGAGGCTCCCGCACGATCCAAG
84180332 TAGCAATGTG
Statistics
Matches: 1882, Mismatches: 317, Indels: 126
0.81 0.14 0.05
Matches are distributed among these distances:
40 16 0.01
41 168 0.09
42 957 0.51
43 737 0.39
44 4 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (43 bp):
CGAGGCTCCCGCACGATCCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:84178158 original size:85 final size:86
Alignment explanation
Indices: 84178027--84180331 Score: 2227
Period size: 85 Copynumber: 27.2 Consensus size: 86
84178017 CCTTGCAGCT
* * * * *
84178027 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
** * * * *
84178090 GCACCAAGGTGCCAATGCTGCT
65 GGGCCTAGGTGCCGATGGTGCC
* * * *
84178112 CGAGGCTCCCGCAC-ATCCAAGGTACCAAGG-TGCCGTTGGTACCCGAGGCTCCCGCACGA-CCA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCA
* **
84178174 AGGGCCGAGGTTGCCGATGGTGTT
64 AGGGCCTAGG-TGCCGATGGTGCC
* ** * *
84178198 CGAGGGTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGA-GCTTCTCGCACGAT-CA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGC-TCCCGCACGATCCA
*
84178259 A-GGCCTAGGTTACCGATGGTGCC
64 AGGGCCTAGG-TGCCGATGGTGCC
* * * *
84178282 AGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCA-TATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* *
84178346 GGCCTAGGTGTCGATGGTGGC
66 GGCCTAGGTGCCGATGGTGCC
* **
84178367 CGAGGCTCCCGCAGGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTTGCACGAT-CAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
84178429 GGCCTAGGTTGCCGATGGTGCC
66 GGCCTAGG-TGCCGATGGTGCC
* * *
84178451 CGAGGTTCCCACACGACCACGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
** * * * *
84178515 CACCAAGGTGCCAATGCTGCT
66 GGCCTAGGTGCCGATGGTGCC
* * * *
84178536 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGG-TGCCGCTGGTGCCCGAGCCTCCCGCACGAT-CA
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCA
* **
84178598 AGGGCCGAGGTTGCCGATGGTGTT
64 AGGGCCTAGG-TGCCGATGGTGCC
* * ** * * * *
84178622 TGAGGCCCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGTTCTCACACGAT-CAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
84178684 -GGCCTAGGTTGCCGATGGTGCC
65 GGGCCTAGG-TGCCGATGGTGCC
* * * * *
84178706 CGAGGTTCTCGCACGATCAAGGG-CTAGGTTGCCGATGGTGCCAGAGGCTCCCGCACGA-CCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
84178769 GGCCTAGGTTGCCGATGGTGCC
66 GGCCTAGG-TGCCGATGGTGCC
* * * **
84178791 CGAGGCTCCTGCAC-ATCTAAGGGCCTAGG-TGCCGATGGTGGCCGAGGCTCCATCACGA-CCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
84178853 GGGCCTAGGTGCCGATGGT-CC
65 GGGCCTAGGTGCCGATGGTGCC
* * * * * *
84178874 CGTGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAAGTTCCCGCACGA-CCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* *
84178938 GGCCTAGGTTACCGTTGGTGCC
66 GGCCTAGG-TGCCGATGGTGCC
** * * * *
84178960 CGAGGCT-CCGCAC-ATCCAAGCACCAATG-TGCCGATGGTACCCGAGGCTCCCGCACGA-CTAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
84179021 GGGCCTAGGTGCCGATGGTGCC
65 GGGCCTAGGTGCCGATGGTGCC
* * * * * ** * *
84179043 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGGCCAAAGCTCCTACATGA-CCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
*
84179107 GGCCTAGGTGCCGATGGTGGC
66 GGCCTAGGTGCCGATGGTGCC
* * * *
84179128 CGAGGCTCCCGCACGACCAAGCGTCTAGGTTGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* ** * *
84179192 GGCCTAGGTTCTAATAGTACC
66 GGCCTAGGTGCCGATGGTGCC
* *
84179213 CGAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCACGA-CCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
**
84179276 GGCCTAGGTTGCCGATGGT-AT
66 GGCCTAGG-TGCCGATGGTGCC
* ** * * *
84179297 TGAGGCTCCTACGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
** * *
84179361 CACCAAGGTGCCGGTGGTGCC
66 GGCCTAGGTGCCGATGGTGCC
** * * * **
84179382 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTTGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAA
* *
84179444 GGCACCAAGGTGCCGATGGTGCC
65 GG-GCCTAGGTGCCGATGGTGCC
* ** *
84179467 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAAC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
** *
84179531 CACCAAGGTGCCGATGGTGCC
66 GGCCTAGGTGCCGATGGTGCC
* * * * * *
84179552 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTTCCGATGGTGCCCGAGGTTCTCGCACGAT-CAA-
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
84179614 GGCCTAGGATGCCGATGGTGCC
66 GGCCTAGG-TGCCGATGGTGCC
* * *
84179636 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGGTGGTGCCCGAGGCTCCCGTAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
*
84179700 GGCCTAGGTGCCGATGGTGGC
66 GGCCTAGGTGCCGATGGTGCC
* *
84179721 CGAGGCT-CCGTACGACCAAGGGCCTAGG-TGCCGATGGT-CCCGAGGCTCTCGCACGA-CCAA-
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
84179781 GGCCTAGGTTGCCGATGGTGCC
66 GGCCTAGG-TGCCGATGGTGCC
* * * * * *
84179803 CGAGGCTCCCGTACGACCAGGGGCCTAGGTTGCTGATGCTGCCTGAGGCTCTCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
** *
84179867 CACCAAGGTGCCGATGGTGCC
66 GGCCTAGGTGCCGATGGTGCC
* * * *
84179888 CGAGGCTCCCGC-CGACCAAGGGCCTAGG-TGCCGATGGTACCCGAGTCTCTCGCATGA-CCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* *
84179950 GGGCTAGGTTGCCGATGGTGGC
66 GGCCTAGG-TGCCGATGGTGCC
* ** * * * *
84179972 CGAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGACCGAGGCTTCCGCACGA-CCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
*
84180035 TGCCTAGGTTGCCGATGGTGCC
66 GGCCTAGG-TGCCGATGGTGCC
* * * *
84180057 CAAGGCTCTCGCACGACCAAGGGCCTAGGTT-CCGATGGTGCCCGAGGCTCTCGCATGA-CCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* **
84180120 GGCCTAGGTTGTCGATGGT-AT
66 GGCCTAGG-TGCCGATGGTGCC
* *
84180141 CGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
** * * *
84180205 CACCAAGGTGCCGGTGGCGCC
66 GGCCTAGGTGCCGATGGTGCC
* * * *
84180226 CGAGGCTCCCGCACGACCAAGGGGCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CAAAC
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
* * *
84180289 GTCCTAGGTTGCCGATGGCGTC
66 GGCCTAGG-TGCCGATGGTGCC
* * *
84180311 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
84180332 TAGCAATGTG
Statistics
Matches: 1846, Mismatches: 312, Indels: 124
0.81 0.14 0.05
Matches are distributed among these distances:
81 8 0.00
82 37 0.02
83 138 0.07
84 550 0.30
85 951 0.52
86 162 0.09
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (86 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGATCCAAG
GGCCTAGGTGCCGATGGTGCC
Found at i:84178435 original size:169 final size:170
Alignment explanation
Indices: 84178027--84180325 Score: 2338
Period size: 169 Copynumber: 13.6 Consensus size: 170
84178017 CCTTGCAGCT
* * * * * *
84178027 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAA
** * * * * ** * *
84178090 GCACCAAGG-TGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGTACCAAGG-TGCCGTTGGT
63 GGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CC-AGGGGCCTAGGTTGCCGATGGT
* * **
84178152 ACCCGAGGCTCCCGCACGA-CCAAGGGCCGAGGTTGCCGATGGTGTT
126 GCCCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* ** * *
84178198 CGAGGGTCCCGCAC-ATCCAAGCACCAAGGTGCCGATGGTGCCCGA-GCTTCTCGCACGATCAA-
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGC-TCTCGCACGACCAAG
* *
84178260 GGCCTAGGTTACCGATGGTGCCAGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
* * * *
84178325 CGAGGCTCCTGCATATCCAAGGGCCTAGGTGTCGATGGTGGC
129 CGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84178367 CGAGGCTCCCGCAGGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTTGCACGATCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * *
84178431 CCTAGGTTGCCGATGGTGCCCGAGGTTCCCACACGACCACGGGCCTAGGTTGCCGATGGTGCCCG
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
** * * * *
84178496 AGGCTCCCGCACATCCAAGCACCAAGGTGCCAATGCTGCT
131 AGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * * *
84178536 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGCTGGTGCCCGAGCCTCCCGCACGATCAAG
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAG
* *** * * ** *
84178600 GGCCGAGGTTGCCGATGGTGTTTGAGGCCCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGC
* * *
84178663 CCGAGGTTCTCACACGAT-CAA-GGCCTAGGTTGCCGATGGTGCC
128 CCGAGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * * * * *
84178706 CGAGGTTCTCGCACGATCAAGGG-CTAGGTTGCCGATGGTGCCAGAGGCTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
* * * *
84178770 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCAC-ATCTAAGGGCCTAGG-TGCCGATGGTGGC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
**
84178833 CGAGGCTCCATCACGA-CCAAGGGCCTAGGTGCCGATGGT-CC
129 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * * * *
84178874 CGTGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCCCGAAGTTCCCGCACGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
* * * ** * * *
84178939 GCCTAGGTTACCGTTGGTGCCCGAGGCT-CCGCAC-ATCCAAGCACCAATG-TGCCGATGGTACC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTGCCGATGGTGCC
*
84179001 CGAGGCTCCCGCACGA-CTAAGGGCCTAGGTGCCGATGGTGCC
129 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * * * * *
84179043 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGGCCAAAGCTC-CTACATGACCAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTC-GCACGACCAAG
* * * * *
84179107 GGCCTAGG-TGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGTCTAGGTTGCCGATGGTGGC
64 GGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
* * ** * *
84179171 CGAGGCTCCCGCACGA-CCAGGGGCCTAGGTTCTAATAGTACC
129 CGAGGCTCCCGCAC-ATCCAAGGGCCTAGGTGCCGATGGTGCC
* *
84179213 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
*** ** *
84179278 CCTAGGTTGCCGATGGT-ATTGAGGCTCCTACGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
* ** * *
84179342 AGGCTCTCGCACATCCAAGCACCAAGGTGCCGGTGGTGCC
131 AGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
** * * * ** *
84179382 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCAATGCTGCTTGAGGCTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGA-CCAAG
* * * * *
84179445 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGT
64 G-GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGC
* *** *
84179509 TCGAGGCTCCCGCACATCCAACCACCAAGGTGCCGATGGTGCC
128 CCGAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * * * *
84179552 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTTCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGG
* *
84179615 GCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGGTGGTGCCC
65 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCC
* *
84179680 GAGGCTCCCGTACATCCAAGGGCCTAGGTGCCGATGGTGGC
130 GAGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
*
84179721 CGAGGCT-CCGTACGACCAAGGGCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAA-GG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * * *
84179783 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGTACGACCAGGGGCCTAGGTTGCTGATGCTGCCTG
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
* ** *
84179848 AGGCTCTCGCACATCCAAGCACCAAGGTGCCGATGGTGCC
131 AGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* * *
84179888 CGAGGCTCCCGC-CGACCAAGGGCCTAGGTGCCGATGGTACCCGAGTCTCTCGCATGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * * ** * *
84179952 GCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGGGCCTAGG-TGCCGATGGTGACCG
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
* *
84180016 AGGCTTCCGCACGA-CCAAGTGCCTAGGTTGCCGATGGTGCC
131 AGGCTCCCGCAC-ATCCAAGGGCCTAGG-TGCCGATGGTGCC
* * * *
84180057 CAAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCATGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* ** *
84180122 CCTAGGTTGTCGATGGT-ATCGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
** * * *
84180186 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGGTGGCGCC
131 AGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
* * * *
84180226 CGAGGCTCCCGCACGACCAAGGGGCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACAAACGT
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
* * * *
84180291 CCTAGGTTGCCGATGGCGTCCAAGGCTCCAGCACG
66 CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACG
84180326 TCCAAGTAGC
Statistics
Matches: 1783, Mismatches: 299, Indels: 93
0.82 0.14 0.04
Matches are distributed among these distances:
167 148 0.08
168 205 0.11
169 866 0.49
170 476 0.27
171 88 0.05
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (170 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGG
CCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCG
AGGCTCCCGCACATCCAAGGGCCTAGGTGCCGATGGTGCC
Found at i:84179580 original size:23 final size:23
Alignment explanation
Indices: 84179554--84179621 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
84179544 ATGGTGCCCG
84179554 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
*** * *
84179577 AGGTT-T--C-CGATGGTGCCCG
1 AGGTTCTCGCACGATCAAGGCCT
84179596 AGGTTCTCGCACGATCAAGGCCT
1 AGGTTCTCGCACGATCAAGGCCT
84179619 AGG
1 AGG
84179622 ATGCCGATGG
Statistics
Matches: 31, Mismatches: 10, Indels: 8
0.63 0.20 0.16
Matches are distributed among these distances:
19 12 0.39
20 2 0.06
22 2 0.06
23 15 0.48
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.22
Consensus pattern (23 bp):
AGGTTCTCGCACGATCAAGGCCT
Found at i:84180344 original size:127 final size:127
Alignment explanation
Indices: 84178027--84180331 Score: 2224
Period size: 127 Copynumber: 18.2 Consensus size: 127
84178017 CCTTGCAGCT
* * * * *
84178027 CGAGGCACCCGCAC-ATCCAACGTCCTAGGTTGTCGATGGTGTCCGAGGCTCCCGCAC-ATCCAA
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAA
** * * * * * * * *
84178090 GCACCAAGGTGCCAATGCTGCTCGAGGCTCCCGCAC-ATCCAAGGTACCAAGG-TGCCGTTGGTA
63 GGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTTGCCGATGGTG
84178153 CC
126 CC
* ** *
84178155 CGAGGCTCCCGCACGACCAAGGGCCGAGGTTGCCGATGGTGTTCGAGGGTCCCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
84178219 CACCAAGGTGCCGATGGTGCCCGA-GCTTCTCGCACGATCAA-GGCCTAGGTTACCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCCCGAGGC-TCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * *
84178282 AGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCTGCA-TATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
* * *
84178346 GGCCTAGGTGTCGATGGTGGCCGAGGCTCCCGCAGGACCAAGGGCCTAGG-TGCCGATGGT-CC
64 GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * * *
84178408 CGAGGCTCTTGCACGATCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGTTCCCACACGACCACGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
** * * * *
84178473 GCCTAGGTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
65 GCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
84178536 CGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGCTGGTGCCCGAGCCTCCCGCACGATCAAG
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* *** * ** *
84178600 GGCCGAGGTTGCCGATGGTGTTTGAGGCCCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGTGC
64 GGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
84178663 C
127 C
* * * * * * *
84178664 CGAGGTTCTCACACGATCAA-GGCCTAGGTTGCCGATGGTGCCCGAGGTTCTCGCACGATCAAGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
84178728 G-CTAGGTTGCCGATGGTGCCAGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGATGGTGCC
65 GCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * **
84178791 CGAGGCTCCTGCAC-ATCTAAGGGCCTAGGTGCCGATGGTGGCCGAGGCTCCATCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
84178855 GCCTAGGTGCCGATGGT-CCCGTGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
84178917 CGAAGTTCCCGCACGACCAGGGGCCTAGGTTACCGTTGGTGCCCGAGGCT-CCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * * *
84178980 CACCAATGTGCCGATGGTACCCGAGGCTCCCGCACGACTAAGGGCCTAGG-TGCCGATGGTGCC
64 GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * ** * *
84179043 CGAGGCTCTCGCACGACCAAGGGCCTAGGTTGTCGATGGTGGCCAAAGCTCCTACATGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * *
84179108 GCCTAGGTGCCGATGGTGGCCGAGGCTCCCGCACGACCAAGCGTCTAGGTTGCCGATGGTGGC
65 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * ** * * *
84179171 CGAGGCTCCCGCACGACCAGGGGCCTAGGTTCTAATAGTACCCGAGGCTCTCGCACGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* * **
84179236 CCTAGGTTCCGATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGT-AT
66 CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* ** * * *
84179297 TGAGGCTCCTACGCGACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * * ** * * * *
84179361 CACCAAGGTGCCGGTGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCAATGCTGCT
64 GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
84179424 TGAGGCTCCCGCAC-ATCCAAGGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
1 CGAGGCTCCCGCACGA-CCAAGG-GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG
* ** *** *
84179488 GGCCGAGGTTGCCGATGGTGTTCGAGGCTCCCGCAC-ATCCAACCACCAAGG-TGCCGATGGTGC
64 GGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGC
84179551 C
127 C
* * * * * * *
84179552 CGAGGTTCTCGCACGATCAA-GGCCTAGGTTTCCGATGGTGCCCGAGGTTCTCGCACGATCAA-G
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* *
84179615 GCCTAGGATGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGCCGGTGGTGCC
65 GCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
84179679 CGAGGCTCCCGTAC-ATCCAAGGGCCTAGGTGCCGATGGTGGCCGAGGCT-CCGTACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
*
84179742 GCCTAGGTGCCGATGGT-CCCGAGGCTCTCGCACGACCAA-GGCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * *
84179803 CGAGGCTCCCGTACGACCAGGGGCCTAGGTTGCTGATGCTGCCTGAGGCTCTCGCAC-ATCCAAG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAG
** * *
84179867 CACCAAGGTGCCGATGGTGCCCGAGGCTCCCGC-CGACCAAGGGCCTAGG-TGCCGATGGTACC
64 GGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * * * ** * *
84179929 CGAGTCTCTCGCATGACCAAGGGGCTAGGTTGCCGATGGTGGCCGAAGCTCCTACATGACCAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * *
84179994 GCCTAGGTGCCGATGGTGACCGAGGCTTCCGCACGACCAAGTGCCTAGGTTGCCGATGGTGCC
65 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * * * *
84180057 CAAGGCTCTCGCACGACCAAGGGCCTAGGTTCCGATGGTGCCCGAGGCTCTCGCATGACCAAGGG
1 CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
* ** * *
84180122 CCTAGGTTGTCGATGGT-ATCGAGGCTCCCGCGCGACCAGGGGCCTAGGTTGCCGATGGTGCC
66 CCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
** * * *
84180184 CGAGGCTCCCGCAC-ATCCAAGCACCAAGGTGCCGGTGGCGCCCGAGGCTCCCGCACGACCAAGG
1 CGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGG
* * * * * * *
84180248 GGCTAGGTGCCGATGGTGCCCGAGGCTCTCGCACGACAAACGTCCTAGGTTGCCGATGGCGTC
65 GCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* * *
84180311 CAAGGCTCCAGCACGTCCAAG
1 CGAGGCTCCCGCACGACCAAG
84180332 TAGCAATGTG
Statistics
Matches: 1802, Mismatches: 320, Indels: 111
0.81 0.14 0.05
Matches are distributed among these distances:
124 47 0.03
125 39 0.02
126 476 0.26
127 844 0.47
128 387 0.21
129 9 0.00
ACGTcount: A:0.18, C:0.33, G:0.33, T:0.17
Consensus pattern (127 bp):
CGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG
CCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCC
Found at i:84180585 original size:24 final size:24
Alignment explanation
Indices: 84180517--84180593 Score: 93
Period size: 24 Copynumber: 3.2 Consensus size: 24
84180507 TTTCAATATT
84180517 CCGGGATGGCTCACCGGAGCACCG
1 CCGGGATGGCTCACCGGAGCACCG
* * * *
84180541 TC-AGATAGCTCGCCGGAGCACCG
1 CCGGGATGGCTCACCGGAGCACCG
*
84180564 CCGGGATGGATCACCGGAGCACCG
1 CCGGGATGGCTCACCGGAGCACCG
*
84180588 TCGGGA
1 CCGGGA
84180594 ACCTAACTGG
Statistics
Matches: 42, Mismatches: 10, Indels: 2
0.78 0.19 0.04
Matches are distributed among these distances:
23 19 0.45
24 23 0.55
ACGTcount: A:0.19, C:0.34, G:0.36, T:0.10
Consensus pattern (24 bp):
CCGGGATGGCTCACCGGAGCACCG
Found at i:84181058 original size:58 final size:59
Alignment explanation
Indices: 84180989--84181110 Score: 183
Period size: 58 Copynumber: 2.1 Consensus size: 59
84180979 GGGAGGGACA
* * *
84180989 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCAAATCCTACC-TTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
* * *
84181047 GGGATGATTCATTCATTATTGGGTACCGAACATGTAACGGTATCCGAATTCTACCTTTT
1 GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
84181106 GGGAT
1 GGGAT
84181111 TGAGGAGGGA
Statistics
Matches: 57, Mismatches: 6, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
58 49 0.86
59 8 0.14
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (59 bp):
GGGATGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCAAATCCTACCTTTT
Found at i:84181778 original size:5 final size:5
Alignment explanation
Indices: 84181770--84181795 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
84181760 TACAAGAAGT
84181770 ATGGC ATGGC ATGGC ATGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC A
84181796 CGACACGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.38, T:0.19
Consensus pattern (5 bp):
ATGGC
Found at i:84184615 original size:35 final size:35
Alignment explanation
Indices: 84184576--84184647 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
84184566 CATTTTCGGA
*
84184576 GCTTGGAAAATATGGAAAGTAATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
* * *
84184611 GCTTGGCAAATATGGAAGGGGATCTTCAAAGATAT
1 GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
84184646 GC
1 GC
84184648 GATCCCAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (35 bp):
GCTTGGAAAATATGGAAAGGAATCTTCAAAGATAT
Found at i:84201656 original size:85 final size:84
Alignment explanation
Indices: 84201480--84202332 Score: 965
Period size: 85 Copynumber: 10.0 Consensus size: 84
84201470 CCAGGCACCA
* *
84201480 AGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGC
1 AGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
** * ** *
84201545 TCCCGCACCTCCTAGCCACCG
65 TCCCGCACGACCAAG-GGCCT
* *
84201566 AGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAG-CACCAAGGTGCCGATGGTGCCCGAGGC
*
84201631 TCCCGCACGACCAAGGGCCG
65 TCCCGCACGACCAAGGGCCT
* * ** *** *
84201651 AGGTGCCGATGGTGGCCGAGGCCCCCGCACGA-CCAAGGGCCTATTTTGCCGATGGTGCCCGAGC
1 AGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AAGGTGCCGATGGTGCCCGAGG
* *
84201715 CTCTCGCACGACCAAGGGTCT
64 CTCCCGCACGACCAAGGGCCT
* * * *
84201736 AGGTTGCCGATGGTGCCCGAGGTTCCGGCACATCCAAGCACCAAGGTGTCGATGGTGCACGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
*
84201801 TCCCGCACGACAAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
* * * * * *
84201821 AGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
84201886 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** ** ** *
84201906 ATTTTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCTTAGTTTGCCGATGGTGCCCGAG
1 A-GGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACCAAG-GTGCCGATGGTGCCCGAG
* *
84201970 CCTCTCGCACGACCAAGGGCCT
63 GCTCCCGCACGACCAAGGGCCT
* * * * * *
84201992 AGGTTGTCGATGGTGCGCGAGGTTCTCGGACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
84202057 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
** * * *
84202077 AGGTTGCCGACAGTGTCCGAGGCTCCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGG
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTGCCCGAGG
84202141 CTCCCGCACGACCAAGGGCCT
64 CTCCCGCACGACCAAGGGCCT
* * *
84202162 AGGTTGCCGATGGTGCCCGAGGCTCCCGCACATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGC
1 AGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
* ** *
84202227 TCCTGCAATACCAAGGGCTT
65 TCCCGCACGACCAAGGGCCT
* * * * * *
84202247 AGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAGGGTGCCGATGGTGCCCGAGGC
1 AG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGC
84202312 TCCCGCACGACCAAGGGCCT
65 TCCCGCACGACCAAGGGCCT
84202332 A
1 A
84202333 TGCTACCGGA
Statistics
Matches: 645, Mismatches: 108, Indels: 29
0.82 0.14 0.04
Matches are distributed among these distances:
84 4 0.01
85 495 0.77
86 146 0.23
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (84 bp):
AGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCT
CCCGCACGACCAAGGGCCT
Found at i:84201946 original size:256 final size:251
Alignment explanation
Indices: 84201483--84202332 Score: 1067
Period size: 256 Copynumber: 3.3 Consensus size: 251
84201473 GGCACCAAGG
* *
84201483 TGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAGTTGCCGATGGTGTCCGAGGCTCC
1 TGCCGAT-GGTGCCCGAGGCTCCGGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCC
** * ** * * * * *
84201548 CGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCTCCCGCACATCCGAGCCACCAAGGT
64 CGCACGACCAAG-GGCCTAGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAG-CACCAAGGT
* * * *
84201613 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCGAGGTGCCGATGGTGGCCGAGGCCCCCG
127 GCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCCGAGGCTCCCG
84201678 CACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGTCTAGGT
192 CACGACCAAGGGCCTA-TTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG-CTAGGT
* *
84201740 TGCCGATGGTGCCCGAGGTTCCGGCACATCCAAGCACCAAGGTGTCGATGGTGCACGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCGGCACATCCAAGCACCAAGGTGCCGATGGTGC-CGAGGCTCCC
* * *
84201805 GCACGACAAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCTAGGAGC
65 GCACGACCAAGGGCCTAG-TTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCAAGGTGC
* *
84201870 CGATGGTGGCCGAGGCTCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGGCTCCCGC
129 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTGCCCGAGGCTCCCGC
*
84201935 ACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCCTAGGT
193 ACGACCAAGGGCCTA-TTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGG-CTAGGT
* * *
84201996 TGTCGATGGTGCGCGAGGTTCTCGG-ACATCCAAGCACCAAGGTGCCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTC-CGGCACATCCAAGCACCAAGGTGCCGATGGTGC-CGAGGCTCC
** * ** *
84202060 CGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCTCCCGCCCATCATAGCACCGAGGTG
64 CGCACGACCAAGGGCCTA-GTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCAAGGTG
84202125 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCCCG
128 CCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GTTGCCGATGGTGCCCGAGGCTCCCG
* ** * ** * * ** *
84202190 CAC-ATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCTC-CTGCAATACCAAGGGCTTAGTT
192 CACGA-CCAAGGGCCTATTTGCCGATGGTGCCCGAGCCTCTC-GCACGACCAAGGGC-TAGGT
* * * * *
84202251 TGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAGGGTGCCGATGGTGCCCGAGGCTCCC
1 TGCCGATGGTGCCCGAGGCTCCGGCACATCCAAGCACCAAGGTGCCGATGGTG-CCGAGGCTCCC
84202316 GCACGACCAAGGGCCTA
65 GCACGACCAAGGGCCTA
84202333 TGCTACCGGA
Statistics
Matches: 522, Mismatches: 61, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
254 4 0.01
255 153 0.29
256 354 0.68
257 11 0.02
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (251 bp):
TGCCGATGGTGCCCGAGGCTCCGGCACATCCAAGCACCAAGGTGCCGATGGTGCCGAGGCTCCCG
CACGACCAAGGGCCTAGTTGCCGATGGTGTCCGAGGCTCCCGCACATCCCAGCACCAAGGTGCCG
ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGTTGCCGATGGTGCCCGAGGCTCCCGCACG
ACCAAGGGCCTATTTGCCGATGGTGCCCGAGCCTCTCGCACGACCAAGGGCTAGGT
Found at i:84202259 original size:128 final size:124
Alignment explanation
Indices: 84201460--84202332 Score: 752
Period size: 128 Copynumber: 6.8 Consensus size: 124
84201450 TCTTCTTTAG
* *
84201460 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCCGAGGCTCCCGCACATCCAAGCACCAAG
1 CCCGCA-AT-CCAAGCACCTAGGTGCCGAT-GGTGCCCGAGGCTCCCGCACATCCAAGCACC-AG
* * ** * ** * *
84201525 TTGCCGATGGTGTCCGAGGCTCCCGCACCTCCTAGCCACCGAGGTGCCGATGCTGCCCGAGGCT
62 GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTGCCGATGGTGCCCGAGGCT
* * **
84201589 CCCGCACATCCGAGCCACCAAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCGAG
1 CCCGCA-ATCCAAG-CACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AG
* * ** *
84201653 GTGCCGATGGTGGCCGAGGCCCCCGCACGACCAAGGGCCTATTTTGCCGATGGTGCCCGAGCCT
62 GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA-GGTGCCGATGGTGCCCGAGGCT
* *** * *
84201717 CTCGCACGA-CCAAGGGTCTAGGTTGCCGATGGTGCCCGAGGTTCCGGCACATCCAAGCACCAAG
1 CCCGCA--ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACC-AG
* * * * *
84201781 GTGTCGATGGTGCACGAGGCTCCCGCACGACAAAGGGCCTAGTTTGCCGATGGTGTCCGAGGCT
62 GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCT
* * * ** *
84201845 CCCGCACATCCCAGCACCTAGGAGCCGATGGTGGCCGAGGCTCCCGCACGA-CCAAGGGCCTATT
1 CCCGCA-ATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-A-G
* * * *
84201909 TTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGTGCCCGAGCCT
62 GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAG-GTGCCGATGGTGCCCGAGGCT
* ** * * * * *
84201973 CTCGCACGA-CCAAGGGCCTAGGTTGTCGATGGTGCGCGAGGTTCTCGGACATCCAAGCACCAAG
1 CCCGCA--ATCCAAGCACCTAGG-TGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACC-AG
* ** *
84202037 GTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGACAGTGTCCGAGGCT
62 GTGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGG-TGCCGATGGTGCCCGAGGCT
* * **
84202101 CCCGCCCAT-CATAGCACCGAGGTGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAG
1 CCCG-CAATCCA-AGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGCACC-AG
* ** * *
84202164 GTTGCCGATGGTGCCCGAGGCTCCCGCAC-ATCGAAGCACCGAGGTGCCGATGGCGCCCGAGGCT
62 G-TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCT
* ** * * * * * *
84202228 CCTGCAATACCAAGGGCTTAGTTTGCCGATGGTGTCCGGGGCTCCTGCACATCCTAGCACCAGGG
1 CCCGCAAT-CCAAGCACCTAG-GTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCA-GG
84202293 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
63 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTA
84202333 TGCTACCGGA
Statistics
Matches: 596, Mismatches: 122, Indels: 54
0.77 0.16 0.07
Matches are distributed among these distances:
126 3 0.01
127 136 0.23
128 401 0.67
129 56 0.09
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (124 bp):
CCCGCAATCCAAGCACCTAGGTGCCGATGGTGCCCGAGGCTCCCGCACATCCAAGCACCAGGTGC
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTGCCGATGGTGCCCGAGGCT
Found at i:84202413 original size:24 final size:24
Alignment explanation
Indices: 84202337--84202415 Score: 106
Period size: 24 Copynumber: 3.3 Consensus size: 24
84202327 GGCCTATGCT
* *
84202337 ACCGGAACGGTTCACCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
84202361 GA-CGGGACGGTTCGCCGGAGCACC
1 -ACCGGGACGGTTCGCCGGAGCACC
* *
84202385 GCCGGGACGGATCGCCGGAGCACC
1 ACCGGGACGGTTCGCCGGAGCACC
84202409 ACCGGGA
1 ACCGGGA
84202416 ACCTAACCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 47 0.98
25 1 0.02
ACGTcount: A:0.20, C:0.35, G:0.38, T:0.06
Consensus pattern (24 bp):
ACCGGGACGGTTCGCCGGAGCACC
Found at i:84202706 original size:42 final size:42
Alignment explanation
Indices: 84202633--84202831 Score: 179
Period size: 42 Copynumber: 4.7 Consensus size: 42
84202623 TTGGTGCTGA
*
84202633 AGGCTCCCGCACAT-CATAGCACCGAGGTGCCGATGGTCTCCG
1 AGGCTCCCGCACATCCA-AGCACCAAGGTGCCGATGGTCTCCG
* ** * * * *
84202675 AGGCTCCC-CACAACCAAGGGCCTAGTTTGCCGGTGGTGTCCG
1 AGGCTCCCGCACATCCAAGCACCAAG-GTGCCGATGGTCTCCG
* *
84202717 ATGCTCCCGCACATCCATGCACCAAGGTGCCGATGGTGCT-CG
1 AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGT-CTCCG
* * ** *
84202759 AGGCTCCCGCACATCCAAGCATCAAGGTTACCGATGGTGGCTG
1 AGGCTCCCGCACATCCAAGCACCAAGG-TGCCGATGGTCTCCG
* *
84202802 AGGCTCCCACACATCCGAGCCACCAAGGTG
1 AGGCTCCCGCACATCCAAG-CACCAAGGTG
84202832 ATGGAGGCTC
Statistics
Matches: 123, Mismatches: 27, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
41 10 0.08
42 65 0.53
43 41 0.33
44 7 0.06
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.17
Consensus pattern (42 bp):
AGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTCTCCG
Found at i:84206687 original size:14 final size:14
Alignment explanation
Indices: 84206668--84206697 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84206658 TCAAATCACC
84206668 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
84206682 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
84206696 GG
1 GG
84206698 CCTAAATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:84211800 original size:14 final size:14
Alignment explanation
Indices: 84211781--84211810 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
84211771 CTCAATCACC
84211781 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
84211795 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
84211809 GG
1 GG
84211811 CCTAAATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.13, G:0.47, T:0.33
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:84216487 original size:41 final size:43
Alignment explanation
Indices: 84216419--84216589 Score: 189
Period size: 41 Copynumber: 4.2 Consensus size: 43
84216409 TCTTCTTTAG
* *
84216419 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTG-CCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGAT-GGTGCCCGAGGCT
* *
84216462 CCCG-ACATCCAAG-CACCAAGTTGCCGATGGTGTCCGAGGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
* * * *
84216503 CCCGCACCTCCTAGCCACCGAGGTGCCGAT-CTGCCCGA-GCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
*
84216544 CCCGCACATCCGAGCCACCAAGGTG-CGATGGTG-CCG-GGCT
1 CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
84216584 -CCGCAC
1 CCCGCAC
84216590 GAGGGCGATG
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
39 6 0.05
40 14 0.13
41 53 0.48
42 21 0.19
43 17 0.15
ACGTcount: A:0.18, C:0.40, G:0.29, T:0.13
Consensus pattern (43 bp):
CCCGCACATCCAAGCCACCAAGGTGCCGATGGTGCCCGAGGCT
Found at i:84216563 original size:84 final size:80
Alignment explanation
Indices: 84216419--84216589 Score: 195
Period size: 84 Copynumber: 2.1 Consensus size: 80
84216409 TCTTCTTTAG
* * *
84216419 CCCGCACATCCCAGGCACCAAGGTGCCGATGGGTGCCGAGGCTCCCGACATCCAAGCACCAAGTT
1 CCCGCACATCCCAGCCACCAAGGTGCCGAT-GCTGCCGAGGCTCCCGACATCCAAGCACCAAGGT
84216484 GCCGATGGTGTCCGAGGCT
65 G-CGATGGTG-CCG-GGCT
* * * *
84216503 CCCGCACCTCCTAGCCACCGAGGTGCCGAT-CTGCCCGA-GCTCCCGCACATCCGAGCCACCAAG
1 CCCGCACATCCCAGCCACCAAGGTGCCGATGCTG-CCGAGGCTCCCG-ACATCCAAG-CACCAAG
84216566 GTGCGATGGTGCCGGGCT
63 GTGCGATGGTGCCGGGCT
84216584 -CCGCAC
1 CCCGCAC
84216590 GAGGGCGATG
Statistics
Matches: 77, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
80 6 0.08
81 4 0.05
82 12 0.16
83 20 0.26
84 35 0.45
ACGTcount: A:0.18, C:0.40, G:0.29, T:0.13
Consensus pattern (80 bp):
CCCGCACATCCCAGCCACCAAGGTGCCGATGCTGCCGAGGCTCCCGACATCCAAGCACCAAGGTG
CGATGGTGCCGGGCT
Found at i:84216793 original size:42 final size:41
Alignment explanation
Indices: 84216733--84216982 Score: 153
Period size: 41 Copynumber: 6.4 Consensus size: 41
84216723 CAGATGCGAG
* * *
84216733 GCCCGAGGCTCCCGCACGACCAAGGGCTTAGTTTGCCGATGGT
1 GCCCGA-GCTCTCGCACGACCAA-GGCCTAGGTTGCCGATGGT
*
84216776 GCCCGAGCTCTCGCACGACCAAGGCCTAGGTTGTCGATGGT
1 GCCCGAGCTCTCGCACGACCAAGGCCTAGGTTGCCGATGGT
* * * *
84216817 GCGCGAGTTCTCG-AC-ATCCAAGCACCAAGG-TG-CGATGGT
1 GCCCGAGCTCTCGCACGA-CCAAG-GCCTAGGTTGCCGATGGT
*
84216856 GCTCGAGC-C-CGC-CG-CCAAGGCCTAGGTTGCCGCAT-GT
1 GCCCGAGCTCTCGCACGACCAAGGCCTAGGTTGCCG-ATGGT
* * * *
84216893 --CCGAGGCTCCCGC-C-ATCTA-GCAC-CGG-TGCCGAT-GT
1 GCCCGA-GCTCTCGCACGACCAAGGC-CTAGGTTGCCGATGGT
*
84216928 GCCCGAG-GCTCGCACG-CCAAGGGCCTA-GTTGCCGATGGT
1 GCCCGAGCTCTCGCACGACCAA-GGCCTAGGTTGCCGATGGT
*
84216967 GCCCGAGCTCCCGCAC
1 GCCCGAGCTCTCGCAC
84216983 ATCGAAGCAC
Statistics
Matches: 162, Mismatches: 23, Indels: 47
0.70 0.10 0.20
Matches are distributed among these distances:
35 16 0.10
36 18 0.11
37 18 0.11
38 19 0.12
39 23 0.14
40 15 0.09
41 32 0.20
42 15 0.09
43 6 0.04
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.17
Consensus pattern (41 bp):
GCCCGAGCTCTCGCACGACCAAGGCCTAGGTTGCCGATGGT
Found at i:84217018 original size:41 final size:39
Alignment explanation
Indices: 84216893--84217018 Score: 118
Period size: 41 Copynumber: 3.3 Consensus size: 39
84216883 TGCCGCATGT
*
84216893 CCGAGGCTCCCGC-CATCTAGCACC-GGTGCCGATGTGC
1 CCGAGGCTCCCGCACATCAAGCACCAGGTGCCGATGTGC
** ** *
84216930 CCGAGGCT--CGCACGCCAAGGGCCTAGTTGCCGATGGTGC
1 CCGAGGCTCCCGCACATCAAGCACC-AGGTGCCGAT-GTGC
*
84216969 CCGA-GCTCCCGCACATCGAAGCACCGAGGTGCCGATGCGC
1 CCGAGGCTCCCGCACATC-AAGCACC-AGGTGCCGATGTGC
84217009 CCGAGGCTCC
1 CCGAGGCTCC
84217019 TGCAATACCA
Statistics
Matches: 68, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
35 3 0.04
36 6 0.09
37 8 0.12
38 11 0.16
39 8 0.12
40 13 0.19
41 19 0.28
ACGTcount: A:0.16, C:0.39, G:0.32, T:0.13
Consensus pattern (39 bp):
CCGAGGCTCCCGCACATCAAGCACCAGGTGCCGATGTGC
Found at i:84217083 original size:83 final size:79
Alignment explanation
Indices: 84216890--84217088 Score: 235
Period size: 83 Copynumber: 2.5 Consensus size: 79
84216880 GGTTGCCGCA
* * *
84216890 TGTCCGAGGCTCCCGC-CAT-CTAGCACC-GGTGCCGATGTGCCCGAGGCTCGCACGCCAAGGGC
1 TGTCCGGGGCTCCCGCACATCCTAGCACCGGGTGCCGATGCGCCCGAGGCTCGCACACCAAGGGC
84216952 CTAGTTGCCGATGG
66 CTAGTTGCCGATGG
* * ** *
84216966 TG-CCCGAGCTCCCGCACATCGAAGCACCGAGGTGCCGATGCGCCCGAGGCTCCTGCAATACCAA
1 TGTCCGGGGCTCCCGCACATCCTAGCACCG-GGTGCCGATGCGCCCGAGGCT-C-GC-ACACCAA
*
84217030 GGGCTTAGTTGCCGATGG
62 GGGCCTAGTTGCCGATGG
*
84217048 TGTCCGGGGCTCCTGCACATCCTAGCACCAGGGTGCCGATG
1 TGTCCGGGGCTCCCGCACATCCTAGCACC-GGGTGCCGATG
84217089 GTGCCGAGCC
Statistics
Matches: 100, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
75 10 0.10
76 5 0.05
77 6 0.06
79 20 0.20
80 1 0.01
81 2 0.02
82 24 0.24
83 31 0.31
84 1 0.01
ACGTcount: A:0.17, C:0.35, G:0.32, T:0.17
Consensus pattern (79 bp):
TGTCCGGGGCTCCCGCACATCCTAGCACCGGGTGCCGATGCGCCCGAGGCTCGCACACCAAGGGC
CTAGTTGCCGATGG
Found at i:84217096 original size:83 final size:79
Alignment explanation
Indices: 84216766--84217096 Score: 228
Period size: 83 Copynumber: 4.2 Consensus size: 79
84216756 GGGCTTAGTT
* * * * *
84216766 TGCCGATGGTGCCCGAGCTCTCGCACGACCAA-GGCCTAGGTTGTCGATGGTG--CGCGAGTTCT
1 TGCCGATGGTG-CCGAG-GCTCGCAC-ACCAAGGGCCTA-GTTGCCGATGGTGTCCG-GGGCTCC
* *
84216828 CG-ACATCCAAGCACCAAGG
61 CGCACATCCTAGCACC-GGG
* * *
84216847 TG-CGATGGTGCTCGA-GCCCGC-CGCCAA-GGCCTAGGTTGCCGCA---TGTCCGAGGCTCCCG
1 TGCCGATGGTGC-CGAGGCTCGCACACCAAGGGCCTA-GTTGCCG-ATGGTGTCCGGGGCTCCCG
84216905 C-CAT-CTAGCACC-GG
63 CACATCCTAGCACCGGG
* * *
84216919 TGCCGAT-GTGCCCGAGGCTCGCACGCCAAGGGCCTAGTTGCCGATGGTG-CCCGAGCTCCCGCA
1 TGCCGATGGTG-CCGAGGCTCGCACACCAAGGGCCTAGTTGCCGATGGTGTCCGGGGCTCCCGCA
**
84216982 CATCGAAGCACCGAGG
65 CATCCTAGCACCG-GG
* * * *
84216998 TGCCGATGCG-CCCGAGGCTCCTGCAATACCAAGGGCTTAGTTGCCGATGGTGTCCGGGGCTCCT
1 TGCCGATG-GTGCCGAGGCT-C-GC-ACACCAAGGGCCTAGTTGCCGATGGTGTCCGGGGCTCCC
84217062 GCACATCCTAGCACCAGGG
62 GCACATCCTAGCACC-GGG
84217081 TGCCGATGGTGCCGAG
1 TGCCGATGGTGCCGAG
84217097 CCGCACGACC
Statistics
Matches: 200, Mismatches: 25, Indels: 48
0.73 0.09 0.18
Matches are distributed among these distances:
72 10 0.05
73 11 0.05
74 22 0.11
75 24 0.12
76 24 0.12
77 8 0.04
78 4 0.02
79 18 0.09
80 12 0.06
81 5 0.03
82 25 0.12
83 36 0.18
84 1 0.00
ACGTcount: A:0.17, C:0.34, G:0.32, T:0.17
Consensus pattern (79 bp):
TGCCGATGGTGCCGAGGCTCGCACACCAAGGGCCTAGTTGCCGATGGTGTCCGGGGCTCCCGCAC
ATCCTAGCACCGGG
Found at i:84217150 original size:23 final size:23
Alignment explanation
Indices: 84217124--84217191 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
84217114 TGCTACCGGA
*
84217124 ACGGTTCACCGGAGCACCGACGG
1 ACGGTTCGCCGGAGCACCGACGG
*
84217147 ACGGTTCGCCGGAGCACCGCCGGG
1 ACGGTTCGCCGGAGCACCGAC-GG
*
84217171 ACGGAT-GCCGGAGCACC-ACGG
1 ACGGTTCGCCGGAGCACCGACGG
84217192 GAACCTAACC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.05
22 1 0.03
23 30 0.75
24 7 0.17
ACGTcount: A:0.19, C:0.35, G:0.38, T:0.07
Consensus pattern (23 bp):
ACGGTTCGCCGGAGCACCGACGG
Found at i:84228275 original size:7 final size:7
Alignment explanation
Indices: 84228265--84228372 Score: 60
Period size: 7 Copynumber: 14.6 Consensus size: 7
84228255 TTTTATATAC
84228265 TAATAAA
1 TAATAAA
84228272 TAATAAA
1 TAATAAA
*
84228279 TAATGAAT
1 TAAT-AAA
*
84228287 TAATATA
1 TAATAAA
84228294 TAATAAA
1 TAATAAA
**
84228301 -AGGAAGA
1 TAATAA-A
*
84228308 TAATATA
1 TAATAAA
84228315 TAATAATA
1 TAATAA-A
*
84228323 TATGATAAG
1 TA--ATAAA
84228332 TAATAAAA
1 TAAT-AAA
84228340 TATATAAA
1 TA-ATAAA
84228348 TAA-AATA
1 TAATAA-A
84228355 TAATGAAA
1 TAAT-AAA
84228363 T-ATAAA
1 TAATAAA
84228369 TAAT
1 TAAT
84228373 TCAATAAATA
Statistics
Matches: 77, Mismatches: 12, Indels: 24
0.68 0.11 0.21
Matches are distributed among these distances:
6 9 0.12
7 36 0.47
8 22 0.29
9 6 0.08
10 4 0.05
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (7 bp):
TAATAAA
Found at i:84228296 original size:15 final size:14
Alignment explanation
Indices: 84228259--84228394 Score: 53
Period size: 15 Copynumber: 9.1 Consensus size: 14
84228249 TTTAATTTTT
84228259 ATATACTAATAAATA
1 ATATA-TAATAAATA
* *
84228274 ATAAATAATGAATTA
1 ATATATAAT-AAATA
*
84228289 ATATATAATAAAAGGA
1 ATATATAAT-AAA-TA
*
84228305 AGATA-ATATATAATA
1 ATATATA-ATA-AATA
* *
84228320 ATATATGATAAGTA
1 ATATATAATAAATA
*
84228334 ATAAAATATATAAATA
1 AT-ATATA-ATAAATA
*
84228350 AAATATAATGAAAT-
1 ATATATAAT-AAATA
* *
84228364 ATAAATAATTCAATA
1 ATATATAA-TAAATA
84228379 A-ATATCATATAAATA
1 ATATAT-A-ATAAATA
84228394 A
1 A
84228395 GGATAGTATA
Statistics
Matches: 88, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
14 23 0.26
15 48 0.55
16 17 0.19
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (14 bp):
ATATATAATAAATA
Found at i:84228300 original size:29 final size:28
Alignment explanation
Indices: 84228259--84228394 Score: 80
Period size: 30 Copynumber: 4.5 Consensus size: 28
84228249 TTTAATTTTT
84228259 ATATACTAATAAATAATAAATAATGAATTA
1 ATATA-TAATAAATAATAAATAAT-AATTA
**
84228289 ATATATAATAAA-AGGAAGATAATATATAATA
1 ATATATAATAAATAATAA-ATAATA-AT--TA
* * *
84228320 ATATATGATAAGTAATAAAATATATAAATA
1 ATATATAATAAATAAT-AAATA-ATAATTA
* *
84228350 AAATATAATGAAAT-ATAAATAATTCAATAA
1 ATATATAAT-AAATAATAAATAA-T-AATTA
84228380 ATATCAT-ATAAATAA
1 ATAT-ATAATAAATAA
84228395 GGATAGTATA
Statistics
Matches: 81, Mismatches: 13, Indels: 24
0.69 0.11 0.20
Matches are distributed among these distances:
28 5 0.06
29 24 0.30
30 25 0.31
31 17 0.21
32 5 0.06
33 5 0.06
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (28 bp):
ATATATAATAAATAATAAATAATAATTA
Found at i:84228322 original size:10 final size:10
Alignment explanation
Indices: 84228258--84228372 Score: 60
Period size: 10 Copynumber: 11.1 Consensus size: 10
84228248 ATTTAATTTT
*
84228258 TATATACTAA
1 TATATAATAA
*
84228268 TAAATAATAA
1 TATATAATAA
84228278 -ATAATGAATTAA
1 TAT-AT-AA-TAA
84228290 TATATAATAA
1 TATATAATAA
* *
84228300 AAGGA-AGATAA
1 TA-TATA-ATAA
84228311 TATATAATAA
1 TATATAATAA
*
84228321 TATATGATAA
1 TATATAATAA
84228331 GTA-ATAA-AA
1 -TATATAATAA
84228340 TATATAAATAA
1 TATAT-AATAA
*
84228351 AATATAATGAA
1 TATATAAT-AA
84228362 -ATATAAATAA
1 TATAT-AATAA
84228372 T
1 T
84228373 TCAATAAATA
Statistics
Matches: 81, Mismatches: 10, Indels: 27
0.69 0.08 0.23
Matches are distributed among these distances:
8 2 0.02
9 5 0.06
10 43 0.53
11 24 0.30
12 5 0.06
13 2 0.02
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (10 bp):
TATATAATAA
Found at i:84228337 original size:17 final size:16
Alignment explanation
Indices: 84228314--84228356 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
84228304 AAGATAATAT
84228314 ATAATAATATATGATAA
1 ATAATAATATAT-ATAA
* *
84228331 GTAATAAAATATATAA
1 ATAATAATATATATAA
84228347 ATAA-AATATA
1 ATAATAATATA
84228357 ATGAAATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 10 0.45
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (16 bp):
ATAATAATATATATAA
Found at i:84228573 original size:21 final size:22
Alignment explanation
Indices: 84228549--84228601 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 22
84228539 AAAATTTATT
*
84228549 AATAAAATGTATAATA-ATATA
1 AATAAAATGGATAATATATATA
84228570 AATAATATAATGGATAATATATATA
1 AAT-A-A-AATGGATAATATATATA
84228595 AATAAAA
1 AATAAAA
84228602 ATAATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
21 3 0.11
22 3 0.11
23 2 0.07
24 11 0.41
25 8 0.30
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (22 bp):
AATAAAATGGATAATATATATA
Found at i:84230228 original size:44 final size:44
Alignment explanation
Indices: 84230180--84230717 Score: 556
Period size: 44 Copynumber: 12.2 Consensus size: 44
84230170 AAACTCAGGA
* * * * * *
84230180 ACGCCAAACCCGTTATCTTCGATCTGTTCTCTGACAAAACAAAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * *
84230224 ACGCCAAATCTGCTATTTTCGATTTGCTCCCTGAT-AATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTG-TCAATACAGAG
** ** *
84230268 ACGCCAAATCTACTATCTTCGATCTGCTCTCTAACAATACAGAA
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* ** * *
84230312 ATGCCAAATCTACTATCTTCGATCTGCTCTTTGTCAATACAGAA
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
84230356 ACGCCAAATCTGCTATCTTTGATCTACTCTCTGTCAATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * *
84230400 ACACCAAATCTGCTATCTTTGATCTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
84230444 ACGCCAAATCTGTCATCTTCGATCTGCTCTTTGTCAACACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * * *
84230488 ACACCAAATCTGTTATCTTTGATCTACTCTCTGACCATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * *
84230532 ACGCCAAATCTGTCATCTTCAATCTGCTCTCTGTCAACACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * * * *
84230576 AAGCCAAATCTGTCATCTTCTATCTACTCTCTGTCAACACAAAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
*
84230620 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTATCAATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
* * * * ** * **
84230664 ATGCCAAATTTGCTATTTTTTATTTGCTCTCTAACAATACAGAG
1 ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
**
84230708 ATTCCAAATC
1 ACGCCAAATC
84230718 AGCTATCGGT
Statistics
Matches: 420, Mismatches: 72, Indels: 4
0.85 0.15 0.01
Matches are distributed among these distances:
44 420 1.00
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (44 bp):
ACGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCAATACAGAG
Found at i:84244836 original size:43 final size:43
Alignment explanation
Indices: 84244765--84244950 Score: 223
Period size: 43 Copynumber: 4.3 Consensus size: 43
84244755 TTGGTATATG
* * *
84244765 CAATCATGCACTATGTGTGACAGTATATTTTCTTC-GATTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAG-TTTATC
*
84244808 CGATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
* *
84244851 CAATGATGCACTATGTGTGCTAGTC-TATTTTCTTCAGCTTATC
1 CAATGATGCACTATGTGTGCCAG-CATATTTTCTTCAGTTTATC
* * * ** * *
84244894 CAATGATGCACTATATGTTCCAGTATAGATACTTTAGTTTATC
1 CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
84244937 CAATGATGCACTAT
1 CAATGATGCACTAT
84244951 ATATGCTAGT
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
43 122 0.98
44 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.40
Consensus pattern (43 bp):
CAATGATGCACTATGTGTGCCAGCATATTTTCTTCAGTTTATC
Found at i:84244933 original size:86 final size:85
Alignment explanation
Indices: 84244765--84245022 Score: 286
Period size: 86 Copynumber: 3.0 Consensus size: 85
84244755 TTGGTATATG
* * * *
84244765 CAATCATGCACTATGTGTGAC-AGTATATTTTCTTCGATTTATCCGATGATGCACTATGTGTGCC
1 CAATGATGCACTATGTGTG-CTAGTATATTTTCTTCG-TTTATCCAATGATGCACTATATGTTCC
* ** *
84244829 AGCATATTTTCTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
* *
84244851 CAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAGCTTATCCAATGATGCACTATATGTTCCA
1 CAATGATGCACTATGTGTGCTAGTATATTTTCTTC-GTTTATCCAATGATGCACTATATGTTCCA
*
84244916 GTATAGATACTTTAGTTTATC
65 GTATAGATACTTCAGTTTATC
* * ** * * * *
84244937 CAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATCTAATGATGCACTATAT-TTGCT
1 CAATGATGCACTATGTGTGCTAGTATATTTTC-TTCGTTTATCCAATGATGCACTATATGTT-CC
84245001 AGTATAGATACTTCAGTTTATC
64 AGTATAGATACTTCAGTTTATC
84245023 TGATGATGAG
Statistics
Matches: 146, Mismatches: 22, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
85 3 0.02
86 140 0.96
87 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (85 bp):
CAATGATGCACTATGTGTGCTAGTATATTTTCTTCGTTTATCCAATGATGCACTATATGTTCCAG
TATAGATACTTCAGTTTATC
Found at i:84245030 original size:43 final size:43
Alignment explanation
Indices: 84244802--84245022 Score: 253
Period size: 43 Copynumber: 5.1 Consensus size: 43
84244792 TTTTCTTCGA
* * * * ** *
84244802 TTTATCCGATGATGCACTATGTGTGCCAGCATATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * ** *
84244845 TTTATCCAATGATGCACTATGTGTGCTAGTCTATTTTCTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* * * *
84244888 CTTATCCAATGATGCACTATATGTTCCAGTATAGATACTTTAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* **
84244931 TTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
* *
84244974 TTTATCTAATGATGCACTATATTTGCTAGTATAGATACTTCAG
1 TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
84245017 TTTATC
1 TTTATC
84245023 TGATGATGAG
Statistics
Matches: 156, Mismatches: 22, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.41
Consensus pattern (43 bp):
TTTATCCAATGATGCACTATATGTGCTAGTATAGATACTTCAG
Found at i:84245105 original size:43 final size:43
Alignment explanation
Indices: 84245052--84245151 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
84245042 TTATTCGATG
* *
84245052 ATGCACTGTATGTGCCAATATAGATATTTCAGA-TTATCTGATT
1 ATGCATTGTATGTGCCAATATAGATACTTCA-ATTTATCTGATT
*
84245095 ATGCATTGTATGTGCCAGTATAGATACTTCAATTTATCTGATT
1 ATGCATTGTATGTGCCAATATAGATACTTCAATTTATCTGATT
84245138 ATGCATTGTATGTG
1 ATGCATTGTATGTG
84245152 TTAGGATAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
42 1 0.02
43 52 0.98
ACGTcount: A:0.28, C:0.13, G:0.18, T:0.41
Consensus pattern (43 bp):
ATGCATTGTATGTGCCAATATAGATACTTCAATTTATCTGATT
Found at i:84245122 original size:110 final size:110
Alignment explanation
Indices: 84244929--84245136 Score: 265
Period size: 110 Copynumber: 1.9 Consensus size: 110
84244919 TAGATACTTT
* * * *
84244929 AGTTTATCCAATGATGCACTATATATGCTAGTATAGATACTTTGGTTTATCTAATGATGCACTAT
1 AGTTTATCCAATGATGCACTATATATGCCAATATAGATACTTTAGATTATCTAATGATGCACTAT
* * *
84244994 ATTTGCTAGTATAGATACTTCAGTTTATCTGATGATGAGATGTTC
66 ATGTGCCAGTATAGATACTTCAATTTATCTGATGATGAGATGTTC
* * * * * * * *
84245039 AGTTTATTCGATGATGCACTGTATGTGCCAATATAGATA-TTTCAGATTATCTGATTATGCATTG
1 AGTTTATCCAATGATGCACTATATATGCCAATATAGATACTTT-AGATTATCTAATGATGCACTA
84245103 TATGTGCCAGTATAGATACTTCAATTTATCTGAT
65 TATGTGCCAGTATAGATACTTCAATTTATCTGAT
84245137 TATGCATTGT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
109 3 0.04
110 79 0.96
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (110 bp):
AGTTTATCCAATGATGCACTATATATGCCAATATAGATACTTTAGATTATCTAATGATGCACTAT
ATGTGCCAGTATAGATACTTCAATTTATCTGATGATGAGATGTTC
Found at i:84249273 original size:47 final size:47
Alignment explanation
Indices: 84249158--84249285 Score: 139
Period size: 47 Copynumber: 2.7 Consensus size: 47
84249148 AATCGATAAG
* * ** *
84249158 TACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATCCCCGAG
1 TACCTATACCAAGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* * * * *
84249205 TACCTATACCATGGCCTGTAGCCAAATTAAGGTAACTCCTCTCAAAA
1 TACCTATACCAAGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
* * *
84249252 TACGTATATCAAGGCCCGTAGCCAAATCTAGGTA
1 TACCTATACCAAGGCCCGTAGCCAAATCAAGGTA
84249286 TTATTCCACC
Statistics
Matches: 67, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
47 67 1.00
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.23
Consensus pattern (47 bp):
TACCTATACCAAGGCCCGTAGCCAAATCAAGGTAACTCATCCCAAAA
Found at i:84260379 original size:27 final size:27
Alignment explanation
Indices: 84260344--84260397 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
84260334 TTGGAAGAAC
*
84260344 AAAAAAACTAAATTTATGGGGGAGAGA
1 AAAAAAACTAAATTTAAGGGGGAGAGA
84260371 AAAAAAACTAAATTTAAGGGGGAGAGA
1 AAAAAAACTAAATTTAAGGGGGAGAGA
84260398 GTGTTTACTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.54, C:0.04, G:0.26, T:0.17
Consensus pattern (27 bp):
AAAAAAACTAAATTTAAGGGGGAGAGA
Found at i:84261351 original size:96 final size:97
Alignment explanation
Indices: 84261186--84261376 Score: 285
Period size: 96 Copynumber: 2.0 Consensus size: 97
84261176 TTTTAATTTA
* * ** *
84261186 TTTATTTTTACTTAGGAATATATTGAACCTTTTGACGCGAAGAGAGATAACAGCCAAACACCCCA
1 TTTATTTTTACTTAAGAACATATCAAACCTTTTGACGCAAAGAGAGATAACAGCCAAACACCCCA
84261251 CCCCGGTTACTCAGCCCAACACACTCTTAATT
66 CCCCGGTTACTCAGCCCAACACACTCTTAATT
* * *
84261283 TTTATTTTT-CTTAAGAACATATCAAACCTTTTGACGCAAAGAGAGATGACAGCCAAGCACCTCA
1 TTTATTTTTACTTAAGAACATATCAAACCTTTTGACGCAAAGAGAGATAACAGCCAAACACCCCA
* *
84261347 CCCCGGTTACTCAGCCTAACACATTCTTAA
66 CCCCGGTTACTCAGCCCAACACACTCTTAA
84261377 AAATTAATTT
Statistics
Matches: 84, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
96 75 0.89
97 9 0.11
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCAAACCTTTTGACGCAAAGAGAGATAACAGCCAAACACCCCA
CCCCGGTTACTCAGCCCAACACACTCTTAATT
Found at i:84262294 original size:14 final size:15
Alignment explanation
Indices: 84262277--84262318 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
84262267 ATAAATCATT
84262277 AAGATAAAAT-AATA
1 AAGATAAAATAAATA
84262291 AAGA-AAAATAAATA
1 AAGATAAAATAAATA
*
84262305 AAAATAAAAATAAA
1 AAGAT-AAAATAAA
84262319 GAGAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 5 0.21
14 11 0.46
16 8 0.33
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.17
Consensus pattern (15 bp):
AAGATAAAATAAATA
Found at i:84262315 original size:16 final size:16
Alignment explanation
Indices: 84262283--84262330 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
84262273 CATTAAGATA
*
84262283 AAATAATAAAGAAAAAT
1 AAATAA-AAATAAAAAT
84262300 AAATAAAAATAAAAAT
1 AAATAAAAATAAAAAT
* *
84262316 AAAGAGAAATAAAAA
1 AAATAAAAATAAAAA
84262331 ATAGGTTGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 22 0.79
17 6 0.21
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (16 bp):
AAATAAAAATAAAAAT
Found at i:84265594 original size:23 final size:23
Alignment explanation
Indices: 84265564--84265609 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
84265554 AAGGAAAGGT
84265564 CAGCCCAACAAGAGGTCAAATGA
1 CAGCCCAACAAGAGGTCAAATGA
84265587 CAGCCCAACAAGAGGTCAAATGA
1 CAGCCCAACAAGAGGTCAAATGA
84265610 TCCGGGGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.22, T:0.09
Consensus pattern (23 bp):
CAGCCCAACAAGAGGTCAAATGA
Found at i:84268318 original size:20 final size:20
Alignment explanation
Indices: 84268295--84268332 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
84268285 TAAATTCTAA
*
84268295 AAGATAAATACAAATAAAAT
1 AAGATAAATAAAAATAAAAT
*
84268315 AAGATAATTAAAAATAAA
1 AAGATAAATAAAAATAAA
84268333 TCCTAAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (20 bp):
AAGATAAATAAAAATAAAAT
Found at i:84277542 original size:21 final size:18
Alignment explanation
Indices: 84277516--84277558 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 18
84277506 ATATCATAAA
84277516 AAATAAAAGTAATTATGAATT
1 AAATAAAA--AATTA-GAATT
84277537 AAAT-AAAAATTAGAATT
1 AAATAAAAAATTAGAATT
84277554 AAATA
1 AAATA
84277559 TAATTTCGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
17 9 0.43
18 5 0.24
20 3 0.14
21 4 0.19
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (18 bp):
AAATAAAAAATTAGAATT
Found at i:84278962 original size:19 final size:19
Alignment explanation
Indices: 84278918--84278977 Score: 79
Period size: 17 Copynumber: 3.2 Consensus size: 19
84278908 AATCTTTAAG
*
84278918 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
84278937 G--ATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
84278954 GATATACAATCTTGAAGATAT
1 GATATACAATCTT--AGATAT
84278975 GAT
1 GAT
84278978 CTTGTAATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
17 16 0.44
19 11 0.31
21 9 0.25
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:84284619 original size:13 final size:12
Alignment explanation
Indices: 84284602--84284672 Score: 67
Period size: 12 Copynumber: 5.9 Consensus size: 12
84284592 TCTATTTCAA
* *
84284602 AAAAAATAAAGG
1 AAAAAAGAAAAG
84284614 AAAAAAGAAAAG
1 AAAAAAGAAAAG
84284626 AAAAAGAGAAAAAG
1 AAAAA-AG-AAAAG
*
84284640 AGAAAAAAAAAAG
1 A-AAAAAGAAAAG
84284653 AAAAAAG---AG
1 AAAAAAGAAAAG
84284662 AAAAAAGAAAA
1 AAAAAAGAAAA
84284673 ATGAAGAGGC
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
9 9 0.18
12 21 0.43
13 8 0.16
14 7 0.14
15 4 0.08
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.01
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:84284631 original size:19 final size:18
Alignment explanation
Indices: 84284602--84284667 Score: 78
Period size: 19 Copynumber: 3.4 Consensus size: 18
84284592 TCTATTTCAA
84284602 AAAAAATAAAGGAAAAAAG
1 AAAAAA-AAAGGAAAAAAG
84284621 AAAAGAAAAAGAGAAAAAGAG
1 AAAA-AAAAAG-GAAAAA-AG
*
84284642 AAAAAAAAAAGAAAAAAG
1 AAAAAAAAAGGAAAAAAG
84284660 AGAAAAAA
1 A-AAAAAA
84284668 GAAAAATGAA
Statistics
Matches: 42, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
18 3 0.07
19 20 0.48
20 13 0.31
21 6 0.14
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.02
Consensus pattern (18 bp):
AAAAAAAAAGGAAAAAAG
Found at i:84284635 original size:8 final size:8
Alignment explanation
Indices: 84284624--84284673 Score: 65
Period size: 7 Copynumber: 6.9 Consensus size: 8
84284614 AAAAAAGAAA
84284624 AGAAAAAG
1 AGAAAAAG
84284632 AGAAAAAG
1 AGAAAAAG
84284640 AG-AAAA-
1 AGAAAAAG
84284646 A-AAAAAG
1 AGAAAAAG
84284653 A-AAAAAG
1 AGAAAAAG
84284660 AGAAAAA-
1 AGAAAAAG
84284667 AGAAAAA
1 AGAAAAA
84284674 TGAAGAGGCC
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
6 5 0.13
7 19 0.49
8 15 0.38
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (8 bp):
AGAAAAAG
Found at i:84284636 original size:20 final size:19
Alignment explanation
Indices: 84284601--84284672 Score: 83
Period size: 20 Copynumber: 3.5 Consensus size: 19
84284591 TTCTATTTCA
84284601 AAAAAAATAAAGGAAAAA-AG
1 AAAAAAA-AAA-GAAAAAGAG
84284621 AAAAGAAAAAGAGAAAAAGAG
1 AAAA-AAAAA-AGAAAAAGAG
84284642 AAAAAAAAAAGAAAAAAGAG
1 AAAAAAAAAAG-AAAAAGAG
84284662 AAAAAAGAAAA
1 AAAAAA-AAAA
84284673 ATGAAGAGGC
Statistics
Matches: 47, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
19 2 0.04
20 31 0.66
21 14 0.30
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.01
Consensus pattern (19 bp):
AAAAAAAAAAGAAAAAGAG
Found at i:84284657 original size:28 final size:28
Alignment explanation
Indices: 84284609--84284673 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
84284599 CAAAAAAAAT
84284609 AAAG-GAAAAAAGAAAAGAAAAAGAGAA
1 AAAGAGAAAAAAGAAAAGAAAAAGAGAA
84284636 AAAGAGAAAAAA-AAAAGAAAAAAGAGAA
1 AAAGAGAAAAAAGAAAAG-AAAAAGAGAA
84284664 AAA-AGAAAAA
1 AAAGAGAAAAA
84284674 TGAAGAGGCC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (28 bp):
AAAGAGAAAAAAGAAAAGAAAAAGAGAA
Found at i:84284679 original size:19 final size:19
Alignment explanation
Indices: 84284613--84284680 Score: 63
Period size: 19 Copynumber: 3.7 Consensus size: 19
84284603 AAAAATAAAG
*
84284613 GAAAAAAGAAAAG-AAAAA
1 GAAAAAAGAAGAGAAAAAA
84284631 GAGAAAAAG-AGA-AAAAAA
1 GA-AAAAAGAAGAGAAAAAA
*
84284649 -AAAGAAAAAAGAGAAAAAA
1 GAAA-AAAGAAGAGAAAAAA
*
84284668 GAAAAATGAAGAG
1 GAAAAAAGAAGAG
84284681 GCCAAGGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
16 2 0.05
17 4 0.10
18 12 0.30
19 19 0.47
20 3 0.08
ACGTcount: A:0.78, C:0.00, G:0.21, T:0.01
Consensus pattern (19 bp):
GAAAAAAGAAGAGAAAAAA
Found at i:84285770 original size:84 final size:84
Alignment explanation
Indices: 84285622--84286148 Score: 764
Period size: 84 Copynumber: 6.3 Consensus size: 84
84285612 AAAATCCAGT
*
84285622 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATATGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
84285687 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* * *
84285706 GTCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATTTTATCTCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
84285771 TGGAGCAGATCGAAGACCC
66 TGGAGCAGATCGAAGACTC
*
84285790 GTCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
84285855 TGGAGCAGATCGAAGACTC
66 TGGAGCAGATCGAAGACTC
* *
84285874 GCCTTAATCCCCTAAGCAGTAGGGTAATAGGTT-CA----CAGATCTTATCTCCCTAAGCAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
84285934 CGGAGCAGATCGACGACGATTC
66 TGGAGCAGATCGA--A-GACTC
* *
84285956 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA-TTGCAGATCTTACCTCCCTAAGCAGTAA
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
* *
84286020 TGGAGCAAATCGAAGACCC
66 TGGAGCAGATCGAAGACTC
* *
84286039 ACCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA--TCCCTAAGTAGTAG
1 GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
*
84286102 CGGAGCAGATCGAAGACGATGC
66 TGGAGCAGATCGAAGAC--T-C
* * *
84286124 ACCTTTACCCCCTAAGCAGTAGGGT
1 GCCTTAATCCCCTAAGCAGTAGGGT
84286149 CCAAGATGAT
Statistics
Matches: 403, Mismatches: 29, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
79 37 0.09
81 1 0.00
82 63 0.16
83 40 0.10
84 204 0.51
85 24 0.06
86 34 0.08
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (84 bp):
GCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGACTC
Found at i:84285846 original size:43 final size:43
Alignment explanation
Indices: 84285631--84285854 Score: 189
Period size: 43 Copynumber: 5.3 Consensus size: 43
84285621 TGCCTTAATC
*
84285631 CCCTAAGCAGTAGGGTAACAGGTTAAATATGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * *
84285674 CCCTAAGCAGTAGTGG-AGCAGATCGAAGA-CT-C-G-TCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGCAGATCTT-ATCT
*
84285715 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATTTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
* * * ** *** *
84285758 CCCTAAGTAGTAGTGG-AGCAGATCGAA-GACCCG-TCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGTTAAATTTGCAGATCTT-ATCT
84285799 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
84285842 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
84285855 TGGAGCAGAT
Statistics
Matches: 137, Mismatches: 28, Indels: 32
0.70 0.14 0.16
Matches are distributed among these distances:
39 1 0.01
40 7 0.05
41 45 0.33
42 18 0.13
43 58 0.42
44 7 0.05
45 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (43 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCT
Found at i:84286879 original size:19 final size:19
Alignment explanation
Indices: 84286855--84286916 Score: 97
Period size: 19 Copynumber: 3.2 Consensus size: 19
84286845 AATCTTTAAG
84286855 GATATGCAATCTTAAATAT
1 GATATGCAATCTTAAATAT
*
84286874 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAAATAT
84286893 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT-AA-ATAT
84286914 GAT
1 GAT
84286917 CTTGTAATCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 31 0.79
20 1 0.03
21 7 0.18
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAAATAT
Found at i:84292315 original size:75 final size:75
Alignment explanation
Indices: 84292218--84292929 Score: 247
Period size: 76 Copynumber: 9.4 Consensus size: 75
84292208 ACTTGGATAG
* * ** * *
84292218 CAATCCCAAGGCTCAAATTATTTTTTAAAACGGATTCAACTTTTGATAAAATGAAAACTAAAAGG
1 CAATCCCGAGGCTCGACCTATTTTTGAAAACGGATTCGACTTTTGATAAAATGAAAACTAAAAGG
84292283 ACCTCGACAG-
66 ACCTCGA-AGA
* * * * ** * *
84292293 CAA-CCTTGAGGCTCGATCTATTTTTGAAAATC-AATTCGACTTTTAATACGATGAAACATTGAA
1 CAATCC-CGAGGCTCGACCTATTTTTGAAAA-CGGATTCGACTTTTGATAAAATGAAA-ACTAAA
* *
84292356 AGGTCCTCGATGA
63 AGGACCTCGAAGA
* * * *
84292369 TAATCCCGAGGCTTGACCCATTTTTGAAAACGGATTCGACTTTTGATACAAA-GAAAACTAAAAA
1 CAATCCCGAGGCTCGACCTATTTTTGAAAACGGATTCGACTTTTGATA-AAATGAAAACTAAAAG
*
84292433 GACC-CCAACGA
65 GACCTCGAA-GA
** * * * * * * * *
84292444 TGATCTCGAGGCTTGACCCATTTTTAAAAAATC-AATT-TAGCTTTTGATAAAATGACAACTGAA
1 CAATCCCGAGGCTCGACCTATTTTT-GAAAA-CGGATTCGA-CTTTTGATAAAATGAAAACTAAA
* * *
84292507 A-GATCTCGATGG
63 AGGACCTCGAAGA
** * * * * * *
84292519 CAATCTTGAGGCTTGACCCATTTTTGAAAACGGATTCGACATTTAATAAAATGAATAACTGAAAT
1 CAATCCCGAGGCTCGACCTATTTTTGAAAACGGATTCGACTTTTGATAAAATGAA-AACTAAAAG
* *
84292584 AACCTC-AACAA
65 GACCTCGAA-GA
* * * * *** * *
84292595 TAATCCCAAGGCTTGA-CTCATTTCTGAAAATAAATTTGACTTTTGATAAAATGAAAACTAAAAA
1 CAATCCCGAGGCTCGACCT-ATTTTTGAAAACGGATTCGACTTTTGATAAAATGAAAACTAAAAG
* * *
84292659 GACATC-AGTGG
65 GACCTCGA-AGA
* * * * * * * * * *
84292670 CAATCCTGAGGCTCAACATATTTTTAAAAAATC-AATTCCACTTTTCATAAAATGACAATTGAAA
1 CAATCCCGAGGCTCGACCTATTTTT-GAAAA-CGGATTCGACTTTTGATAAAATGAAAACTAAAA
*
84292734 GGACCTTGACAG-
64 GGACCTCGA-AGA
* * * * * * * *
84292746 TAATCTCGAGGCTCGGCCCATTTTTAGAAAAAAAGGATTTGACTTTTTCATAAACA--AAAGA-G
1 CAATCCCGAGGCTCGACCTATTTTT-G--AAAACGGATTCGAC-TTTTGATAAA-ATGAAA-ACT
** *
84292808 AAAAGGATTTCGAAGG
60 AAAAGGACCTCGAAGA
* ** ** * * *
84292824 CAATTCCGAAACTTAATCC-ATTTTTGAGAAATGGATTCAACTTTTGATAAAA-GACAACTAAAA
1 CAATCCCGAGGCTCGA-CCTATTTTTGA-AAACGGATTCGACTTTTGATAAAATGAAAACTAAAA
*
84292887 GGACCTC-AACAA
64 GGACCTCGAA-GA
** *
84292899 CAATATCGAGGCTTGACCTATTTTTGGAAAA
1 CAATCCCGAGGCTCGACCTATTTTT-GAAAA
84292930 TATATTCAAA
Statistics
Matches: 464, Mismatches: 135, Indels: 76
0.69 0.20 0.11
Matches are distributed among these distances:
73 1 0.00
74 30 0.06
75 185 0.40
76 191 0.41
77 9 0.02
78 34 0.07
79 13 0.03
80 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (75 bp):
CAATCCCGAGGCTCGACCTATTTTTGAAAACGGATTCGACTTTTGATAAAATGAAAACTAAAAGG
ACCTCGAAGA
Found at i:84292392 original size:76 final size:75
Alignment explanation
Indices: 84292251--84292653 Score: 264
Period size: 76 Copynumber: 5.3 Consensus size: 75
84292241 TTTAAAACGG
* * * * * * * * * *
84292251 ATTCAACTTTTGATAAAATGAAAACTAAAAGGACCTCGAC-AGCAA-CCTTGAGGCTCGATCTAT
1 ATTCGACTTTTAATAAAATGAAAACTGAAAGAACCTCAACGA-TAATCC-CGAGGCTTGACCCAT
84292314 TTTTGAAAATCA
64 TTTTGAAAATCA
** * ** * *
84292326 ATTCGACTTTTAATACGATGAAACATTGAAAGGTCCTCGATGATAATCCCGAGGCTTGACCCATT
1 ATTCGACTTTTAATAAAATGAAA-ACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATT
*
84292391 TTTGAAAA-CGG
65 TTTGAAAATC-A
* * * * *
84292402 ATTCGACTTTTGATACAAA-GAAAACT-AAAAAGACCCCAACGATGATCTCGAGGCTTGACCCAT
1 ATTCGACTTTTAATA-AAATGAAAACTGAAAGA-ACCTCAACGATAATCCCGAGGCTTGACCCAT
*
84292465 TTTTAAAAAATCA
64 TTTT-GAAAATCA
* * * * * * ** **
84292478 ATT-TAGCTTTTGATAAAATGACAACTGAAAG-ATCTCGATGGCAATCTTGAGGCTTGACCCATT
1 ATTCGA-CTTTTAATAAAATGAAAACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATT
*
84292541 TTTGAAAA-CGG
65 TTTGAAAATC-A
* * * * *
84292552 ATTCGACATTTAATAAAATGAATAACTGAAATAACCTCAACAATAATCCCAAGGCTTGACTCATT
1 ATTCGACTTTTAATAAAATGAA-AACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATT
* *
84292617 TCTGAAAATAA
65 TTTGAAAATCA
* *
84292628 ATTTGACTTTTGATAAAATGAAAACT
1 ATTCGACTTTTAATAAAATGAAAACT
84292654 AAAAAGACAT
Statistics
Matches: 250, Mismatches: 62, Indels: 32
0.73 0.18 0.09
Matches are distributed among these distances:
73 1 0.00
74 23 0.09
75 95 0.38
76 123 0.49
77 8 0.03
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (75 bp):
ATTCGACTTTTAATAAAATGAAAACTGAAAGAACCTCAACGATAATCCCGAGGCTTGACCCATTT
TTGAAAATCA
Found at i:84292557 original size:150 final size:150
Alignment explanation
Indices: 84292376--84292653 Score: 375
Period size: 150 Copynumber: 1.9 Consensus size: 150
84292366 TGATAATCCC
* *
84292376 GAGGCTTGACCCATTTTTGAAAACGGATTCGACTTTTGATACAAA-GAA-AACT-AAAAAGACCC
1 GAGGCTTGACCCATTTTTGAAAACGGATTCGACATTTAATA-AAATGAATAACTGAAAAA-ACCC
* * * * * * *
84292438 CAACGATGATCTCGAGGCTTGACCCATTTTTAAAAAATCAATTT-AGCTTTTGATAAAATGACAA
64 CAACAATAATCCCAAGGCTTGACCCATTTCT-AAAAATAAATTTGA-CTTTTGATAAAATGAAAA
84292502 CTGAAAGATCTCGATGGCAATCTT
127 CTGAAAGATCTCGATGGCAATCTT
* *
84292526 GAGGCTTGACCCATTTTTGAAAACGGATTCGACATTTAATAAAATGAATAACTGAAATAACCTCA
1 GAGGCTTGACCCATTTTTGAAAACGGATTCGACATTTAATAAAATGAATAACTGAAAAAACCCCA
* *
84292591 ACAATAATCCCAAGGCTTGACTCATTTCTGAAAATAAATTTGACTTTTGATAAAATGAAAACT
66 ACAATAATCCCAAGGCTTGACCCATTTCTAAAAATAAATTTGACTTTTGATAAAATGAAAACT
84292654 AAAAAGACAT
Statistics
Matches: 111, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
149 3 0.03
150 71 0.64
151 33 0.30
152 4 0.04
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (150 bp):
GAGGCTTGACCCATTTTTGAAAACGGATTCGACATTTAATAAAATGAATAACTGAAAAAACCCCA
ACAATAATCCCAAGGCTTGACCCATTTCTAAAAATAAATTTGACTTTTGATAAAATGAAAACTGA
AAGATCTCGATGGCAATCTT
Found at i:84292977 original size:75 final size:74
Alignment explanation
Indices: 84292828--84293002 Score: 192
Period size: 75 Copynumber: 2.4 Consensus size: 74
84292818 CGAAGGCAAT
* * ** *
84292828 TCCGAAACTTAATCCATTTTT-GAGAAATGGATTCAACTTTTGATAAAAGACAACTAAAAGGACC
1 TCCGAGACTTGATCCATTTTTGGA-AAATATATTCAAATTTTGATAAAAGACAACTAAAAGGACC
84292892 TCAACAACAA
65 TCAACAACAA
* * * * *
84292902 TATCGAGGCTTGA-CCTATTTTTGGAAAATATATTCAAATTTTGATAAAAGGCAATTGAAAGGAC
1 T-CCGAGACTTGATCC-ATTTTTGGAAAATATATTCAAATTTTGATAAAAGACAACTAAAAGGAC
**
84292966 CTCAATGACAA
64 CTCAACAACAA
*
84292977 TCCGAGACTTGATCCATTTTTTGAAA
1 TCCGAGACTTGATCCATTTTTGGAAA
84293003 TAGTCTTGAC
Statistics
Matches: 82, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
74 22 0.27
75 58 0.71
76 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (74 bp):
TCCGAGACTTGATCCATTTTTGGAAAATATATTCAAATTTTGATAAAAGACAACTAAAAGGACCT
CAACAACAA
Found at i:84293245 original size:30 final size:30
Alignment explanation
Indices: 84293204--84293270 Score: 82
Period size: 30 Copynumber: 2.2 Consensus size: 30
84293194 GGGAAAATCC
* * *
84293204 AGAACTTCGACAAT-GAACGTGGATGAAACT
1 AGAAATTCGACAATGGAAC-TAGACGAAACT
*
84293234 AGAAATTCGACAATGGATCTAGACGAAACT
1 AGAAATTCGACAATGGAACTAGACGAAACT
84293264 AGAAATT
1 AGAAATT
84293271 TTAGAATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (30 bp):
AGAAATTCGACAATGGAACTAGACGAAACT
Found at i:84297623 original size:34 final size:34
Alignment explanation
Indices: 84297585--84297649 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
84297575 TCTAATACTA
84297585 TTATTGTAATAGGCTAAAGCCCACACTGATATTG
1 TTATTGTAATAGGCTAAAGCCCACACTGATATTG
* * *
84297619 TTATTGTAATGGGCTTAGGCCCACACTGATA
1 TTATTGTAATAGGCTAAAGCCCACACTGATA
84297650 CTGGACTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (34 bp):
TTATTGTAATAGGCTAAAGCCCACACTGATATTG
Found at i:84305185 original size:21 final size:21
Alignment explanation
Indices: 84305146--84305186 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
84305136 AAGTGTACTG
**
84305146 TACTGGCAGCTCTGTTGCAAT
1 TACTGGCAGCTCTACTGCAAT
84305167 TACTGGCAGCTCTACTGCAA
1 TACTGGCAGCTCTACTGCAA
84305187 ACACTGATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (21 bp):
TACTGGCAGCTCTACTGCAAT
Found at i:84305192 original size:21 final size:21
Alignment explanation
Indices: 84305147--84305192 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
84305137 AGTGTACTGT
** **
84305147 ACTGGCAGCTCTGTTGCAATT
1 ACTGGCAGCTCTACTGCAAAC
84305168 ACTGGCAGCTCTACTGCAAAC
1 ACTGGCAGCTCTACTGCAAAC
84305189 ACTG
1 ACTG
84305193 ATTAGTGTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (21 bp):
ACTGGCAGCTCTACTGCAAAC
Found at i:84307098 original size:26 final size:28
Alignment explanation
Indices: 84307061--84307117 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 28
84307051 AAGAGAAAAG
84307061 AAGAGAAAGAAAT-TTTTTTTTTC-TAA
1 AAGAGAAAGAAATATTTTTTTTTCTTAA
*
84307087 AAGAGAAGGAAATGATTTTTTTTTCTTAA
1 AAGAGAAAGAAAT-ATTTTTTTTTCTTAA
84307116 AA
1 AA
84307118 TTTCTACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 12 0.44
28 10 0.37
29 5 0.19
ACGTcount: A:0.42, C:0.04, G:0.14, T:0.40
Consensus pattern (28 bp):
AAGAGAAAGAAATATTTTTTTTTCTTAA
Found at i:84307622 original size:4 final size:4
Alignment explanation
Indices: 84307613--84307650 Score: 67
Period size: 4 Copynumber: 9.5 Consensus size: 4
84307603 CATGTATATT
*
84307613 TTGA TTGA TTGA TTGA TTGA TTGG TTGA TTGA TTGA TT
1 TTGA TTGA TTGA TTGA TTGA TTGA TTGA TTGA TTGA TT
84307651 TTCAATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (4 bp):
TTGA
Found at i:84307827 original size:12 final size:12
Alignment explanation
Indices: 84307810--84307855 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
84307800 TTAGATTTTA
84307810 TTATTATTATTG
1 TTATTATTATTG
84307822 TTATTATTCATT-
1 TTATTATT-ATTG
84307834 TTATTAGTTATTG
1 TTATTA-TTATTG
84307847 -TATT-TTATT
1 TTATTATTATT
84307856 TTCTTTGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
10 5 0.16
12 21 0.68
13 5 0.16
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67
Consensus pattern (12 bp):
TTATTATTATTG
Found at i:84313022 original size:43 final size:43
Alignment explanation
Indices: 84312852--84313023 Score: 138
Period size: 43 Copynumber: 4.0 Consensus size: 43
84312842 CATAAGATTC
* * * *
84312852 CGATATGTGATTTCATGTAAGACCACGTTTGGGA-AGTTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGAGACA-TTGGCAT
* * * * *
84312895 CGAT-TTAAGATTTACATGTAAGACCATGTCTGTGACATCGACAT
1 CGATATT-TGA-TTACATGTAAGACCACGTCTGAGACATTGGCAT
*** * *
84312939 CG-TATTTGATTTTGTGTAAGACC-CTGTCT-AGGAAAGTGGCAT
1 CGATATTTGATTACATGTAAGACCAC-GTCTGA-GACATTGGCAT
84312981 CGATATTTGATTACATGTAAGACCACGTCTGAGACATTGGCAT
1 CGATATTTGATTACATGTAAGACCACGTCTGAGACATTGGCAT
84313024 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 23, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
42 25 0.26
43 40 0.41
44 31 0.32
45 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTACATGTAAGACCACGTCTGAGACATTGGCAT
Found at i:84317209 original size:51 final size:49
Alignment explanation
Indices: 84317145--84317652 Score: 250
Period size: 51 Copynumber: 10.8 Consensus size: 49
84317135 TCTATCATAG
* * * *
84317145 CAAATCTTCTCTCCCTGAAGTTGCAGTGGAATAAACTAAAGCTACAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAA-CTA-AAGTTA
* * **
84317196 CAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAA--AATAG--A
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAACTAA-AGTTA
* * * * **
84317242 -AAATCTTATCTCTCTGAAATTGCAATAGAGCAGATTAAAGCT--A--T-
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAA-CTAAAGTTA
* ** * * *
84317286 -AAACCTTAGT-TCCCTGAAGTTGCAGTGGAGCAGATTGAA-GATAG---
1 CAAATCTTA-TCTCCCTGAAGTTGCAGTGGAATAGATTAAACTAAAGTTA
* * * * *
84317330 CGAATCTTATTTTCCTGAAGTTGTAGTGGAATAGATTAAAGCTACAAATTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAA-CTA-AAGTTA
* ** * *
84317381 CAAATCTTATCTCACTGAAGTTGCA---G--TAGAGCAAATTGAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAACTAAAGTTA
* * *
84317425 CAGATCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-T---C-AAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAACTAAAGTTA
** * *
84317469 GCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-GA--AAA--TG
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAACTAAAGTTA
* *
84317514 CTAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAA-CTA-AAGTTA
* * * * * *
84317565 TAAGTCTTATTTCCCTGAAGTTGAAGTGGAACAAATTAAAGCTACAAGTTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAA-CTA-AAGTTA
** * *
84317616 CAAATCTTATCTCGTTGAAGTTGCAGTGTAGTAGATT
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATT
84317653 GAAGATACAA
Statistics
Matches: 355, Mismatches: 69, Indels: 66
0.72 0.14 0.13
Matches are distributed among these distances:
44 99 0.28
45 103 0.29
46 9 0.03
47 6 0.02
48 6 0.02
49 6 0.02
51 126 0.35
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (49 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTAAACTAAAGTTA
Found at i:84317348 original size:89 final size:89
Alignment explanation
Indices: 84317190--84317557 Score: 368
Period size: 89 Copynumber: 4.1 Consensus size: 89
84317180 CTAAAGCTAC
* * * *
84317190 AAGCTA-CAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAAATAGAAAATCTTATCTC
1 AAGCTAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAATAG-CAATCTTATTTC
* * * * **
84317254 TCTGAAATTGCAATAGAGCAGATTA
65 CCTGAAGTTGCAGTGGAATAGATTA
* * * *
84317279 AAGCTA-TAAACCTTAGT-TCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTT
1 AAGCTAGCAAATCTTA-TCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAATAGC-AATCTTATTT
* *
84317342 TCCTGAAGTTGTAGTGGAATAGATTA
64 CCCTGAAGTTGCAGTGGAATAGATTA
* * * **
84317368 AAGCTACAAATTACAAATCTTATCTCACTGAAGTTGCAGTAGAGCAAATTGAAGTTA-CAGATCT
1 AAGCT----A--GCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAATAGCA-ATCT
* * *
84317432 TATCTCCCTGAAGTTGCAGTGGAGTAGATCA
59 TATTTCCCTGAAGTTGCAGTGGAATAGATTA
* *
84317463 AAGATAGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAAT-GCTAATCTTATTTC
1 AAGCTAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAATAGC-AATCTTATTTC
84317527 CCTGAAGTTGCAGTGGAATAGATTA
65 CCTGAAGTTGCAGTGGAATAGATTA
84317552 AAGCTA
1 AAGCTA
84317558 CAAGTTATAA
Statistics
Matches: 228, Mismatches: 38, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
89 151 0.66
90 2 0.01
91 1 0.00
93 1 0.00
94 1 0.00
95 36 0.16
96 36 0.16
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (89 bp):
AAGCTAGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAAATAGCAATCTTATTTCC
CTGAAGTTGCAGTGGAATAGATTA
Found at i:84317506 original size:140 final size:134
Alignment explanation
Indices: 84317196--84317511 Score: 364
Period size: 140 Copynumber: 2.3 Consensus size: 134
84317186 CTACAAGCTA
* * *
84317196 CAAATCTTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAAATAGAAAATCTTATCTCTCTGAAA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAAAAGAAAATCTTATCTCACTGAAA
* * **
84317261 TTGCAATAGAGCAGATTAAAGCTATAAACCTTAGTTCCCTGAAGTTGCAGTGGAGCAGATTGAAG
66 TTGCAATAGAGCAAATTAAAGCTACAAACCTTAGTTCCCTGAAGTTGCAGTGGAGCAGATCAAAG
84317326 ATAG
131 ATAG
* * * ** *
84317330 CGAATCTTATTTTCCTGAAGTTGTAGTGGAATAGATTAAAGCTACAAATTACAAATCTTATCTCA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAA---A-AAA-GA-AAATCTTATCTCA
* * * * * * *
84317395 CTGAAGTTGCAGTAGAGCAAATTGAAGTTACAGATCTTA-TCTCCCTGAAGTTGCAGTGGAGTAG
60 CTGAAATTGCAATAGAGCAAATTAAAGCTACAAACCTTAGT-TCCCTGAAGTTGCAGTGGAGCAG
84317459 ATCAAAGATAG
124 ATCAAAGATAG
* *
84317470 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
1 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAA
84317512 TGCTAATCTT
Statistics
Matches: 148, Mismatches: 27, Indels: 12
0.79 0.14 0.06
Matches are distributed among these distances:
134 34 0.23
136 1 0.01
137 2 0.01
138 2 0.01
139 2 0.01
140 107 0.72
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (134 bp):
CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAAAAAGAAAATCTTATCTCACTGAAA
TTGCAATAGAGCAAATTAAAGCTACAAACCTTAGTTCCCTGAAGTTGCAGTGGAGCAGATCAAAG
ATAG
Found at i:84317745 original size:44 final size:44
Alignment explanation
Indices: 84317614--84317750 Score: 166
Period size: 44 Copynumber: 3.1 Consensus size: 44
84317604 AGCTACAAGT
* * * *
84317614 TACAAATCTTATCTCGTTGAAGTTGCAGTGTAGTAGATTGAAGA
1 TACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGC
* * *
84317658 TACAAATGTTATTTCCTTGAAGTTGTAGTGGAGCAGATTGAAGC
1 TACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGC
* * * *
84317702 TACTAATCTTATCTCCCTGAAGTTGCACTGGAGCAAATTGAAGC
1 TACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGC
*
84317746 GACAA
1 TACAA
84317751 TTACTATACC
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 77 1.00
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31
Consensus pattern (44 bp):
TACAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGC
Found at i:84319039 original size:22 final size:22
Alignment explanation
Indices: 84319009--84319050 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
84318999 AGCTTATCGT
* *
84319009 TTCAGCTCTTATAAGCTTACTA
1 TTCAACTCTTAGAAGCTTACTA
*
84319031 TTCAACTCTTCGAAGCTTAC
1 TTCAACTCTTAGAAGCTTAC
84319051 CATTTCAGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (22 bp):
TTCAACTCTTAGAAGCTTACTA
Found at i:84321606 original size:27 final size:28
Alignment explanation
Indices: 84321567--84321623 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
84321557 GAGAGAAAAG
**
84321567 AAGAGAAAGAAATTTTTTTTTTTC-TAA
1 AAGAGAAAGAAATGATTTTTTTTCTTAA
84321594 AAGAG-AAGCAAATGATTTTTTTTCTTAA
1 AAGAGAAAG-AAATGATTTTTTTTCTTAA
84321622 AA
1 AA
84321624 TTTCTGCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.12
27 18 0.69
28 5 0.19
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.40
Consensus pattern (28 bp):
AAGAGAAAGAAATGATTTTTTTTCTTAA
Found at i:84322252 original size:24 final size:25
Alignment explanation
Indices: 84322215--84322266 Score: 65
Period size: 24 Copynumber: 2.1 Consensus size: 25
84322205 TATTTTTACA
84322215 ATTGGCCTTTTTTATATT-TTT-TTT
1 ATTGGCCTTTTTTAT-TTATTTATTT
84322239 ATTGTGCC-TTTTTATTTATTTATTT
1 ATTG-GCCTTTTTTATTTATTTATTT
84322264 ATT
1 ATT
84322267 TACTATTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
23 2 0.08
24 14 0.56
25 9 0.36
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (25 bp):
ATTGGCCTTTTTTATTTATTTATTT
Found at i:84322315 original size:12 final size:11
Alignment explanation
Indices: 84322298--84322336 Score: 51
Period size: 12 Copynumber: 3.3 Consensus size: 11
84322288 AATTTAGATA
84322298 TTATTATTATT
1 TTATTATTATT
84322309 GTTATTATTCATT
1 -TTATTATT-ATT
84322322 TTATTAGTTATT
1 TTATTA-TTATT
84322334 TTA
1 TTA
84322337 ATTTTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 20 0.80
13 5 0.20
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (11 bp):
TTATTATTATT
Found at i:84322340 original size:18 final size:18
Alignment explanation
Indices: 84322304--84322341 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
84322294 GATATTATTA
*
84322304 TTATTGTTATTATTCATT
1 TTATTGTTATTATTAATT
84322322 TTATTAGTTATT-TTAATT
1 TTATT-GTTATTATTAATT
84322340 TT
1 TT
84322342 TTCTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (18 bp):
TTATTGTTATTATTAATT
Found at i:84323793 original size:25 final size:25
Alignment explanation
Indices: 84323765--84323821 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
84323755 CAATTGGTCA
* *
84323765 AATTTTGTTTTAATTAATA-TTTTTT
1 AATTTTATTTTAACTAA-AGTTTTTT
84323790 AATTTTATTTTAACTAAAGTTTTTT
1 AATTTTATTTTAACTAAAGTTTTTT
*
84323815 ATTTTTA
1 AATTTTA
84323822 AAAAGTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (25 bp):
AATTTTATTTTAACTAAAGTTTTTT
Found at i:84323992 original size:21 final size:19
Alignment explanation
Indices: 84323960--84323999 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
84323950 TACTTTTTTT
*
84323960 TTAAATTTTTTTAATATTGA
1 TTAAATTATTTTAAT-TTGA
84323980 TTAAATCTATTTTAATTTGA
1 TTAAAT-TATTTTAATTTGA
84324000 AAAACTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (19 bp):
TTAAATTATTTTAATTTGA
Found at i:84328374 original size:21 final size:22
Alignment explanation
Indices: 84328343--84328387 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
84328333 TTTTATAAAA
84328343 TTTTATAAAAATAAAT-TAGTTT
1 TTTTATAAAAA-AAATATAGTTT
*
84328365 TTTTAT-AAAAAATTATAGTTT
1 TTTTATAAAAAAAATATAGTTT
84328386 TT
1 TT
84328388 AAAATAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 12 0.57
22 6 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (22 bp):
TTTTATAAAAAAAATATAGTTT
Found at i:84328408 original size:10 final size:10
Alignment explanation
Indices: 84328393--84328443 Score: 84
Period size: 10 Copynumber: 5.1 Consensus size: 10
84328383 TTTTTAAAAT
84328393 AATTTTTATA
1 AATTTTTATA
84328403 AATTTTTATA
1 AATTTTTATA
84328413 AATTTTTATA
1 AATTTTTATA
84328423 AATTTTTATA
1 AATTTTTATA
**
84328433 TTTTTTTATA
1 AATTTTTATA
84328443 A
1 A
84328444 TTCTAAATTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 38 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
AATTTTTATA
Found at i:84339564 original size:23 final size:22
Alignment explanation
Indices: 84339521--84339578 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
84339511 AAAAGGTATC
* *
84339521 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
84339542 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
84339565 TGCATATCATATCT
1 TACAAATCATATCT
84339579 AAGATTGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:84339581 original size:19 final size:19
Alignment explanation
Indices: 84339557--84339647 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
84339547 AATCATATCT
84339557 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
84339576 TCTAAGATTGTA-ATCATA
1 TCTAAGATTGCATATCATA
84339594 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
84339611 TCTAAGATTGCATGTCATA
1 TCTAAGATTGCATATCATA
84339630 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
84339648 TGAAGATTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:84341297 original size:49 final size:49
Alignment explanation
Indices: 84341217--84341363 Score: 258
Period size: 49 Copynumber: 3.0 Consensus size: 49
84341207 GCCCTTCGGG
84341217 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
* *
84341267 ACTTTCGCATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
*
84341316 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACA
84341364 TTTTCACATT
Statistics
Matches: 92, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 88 0.96
50 4 0.04
ACGTcount: A:0.31, C:0.31, G:0.09, T:0.30
Consensus pattern (49 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
Found at i:84341693 original size:24 final size:23
Alignment explanation
Indices: 84341645--84341702 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
84341635 TAATCAAACA
84341645 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
84341669 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
84341693 TTATT-TTATA
1 TTATTATTATA
84341703 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:84344892 original size:40 final size:40
Alignment explanation
Indices: 84344862--84345202 Score: 393
Period size: 40 Copynumber: 8.5 Consensus size: 40
84344852 AGCATGATTA
* * * *
84344862 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
84344902 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
84344942 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
84344982 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** *
84345022 CTCTTCGAAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
84345062 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
84345102 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
84345143 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
84345183 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
84345203 CATCGTTCGA
Statistics
Matches: 263, Mismatches: 33, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
39 3 0.01
40 241 0.92
41 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:84345549 original size:29 final size:29
Alignment explanation
Indices: 84345510--84345588 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
84345500 CTTAATAATC
*
84345510 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
84345540 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
84345569 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
84345589 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:84345631 original size:43 final size:43
Alignment explanation
Indices: 84345570--84345715 Score: 283
Period size: 43 Copynumber: 3.4 Consensus size: 43
84345560 TGCATTTCAA
84345570 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84345613 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
84345656 GCCCACACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
84345699 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
84345716 TGAAAACCAA
Statistics
Matches: 101, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.27, C:0.36, G:0.14, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:84347621 original size:37 final size:37
Alignment explanation
Indices: 84347571--84347649 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
84347561 TTATTACGAA
* * *
84347571 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
84347608 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
84347645 GTCTT
1 GTCTT
84347650 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:84347844 original size:49 final size:48
Alignment explanation
Indices: 84347767--84347924 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
84347757 GCCCTTCGGG
*
84347767 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-AC
84347817 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA-AC
84347866 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-AC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAC
84347913 ACTTTCACATTC
1 ACTTTCACATTC
84347925 TCAAAGTAAG
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 14 0.13
49 88 0.83
50 4 0.04
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAAC
Found at i:84348243 original size:24 final size:23
Alignment explanation
Indices: 84348195--84348252 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
84348185 TAATCAAACA
84348195 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
84348219 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
84348243 TTATT-TTATA
1 TTATTATTATA
84348253 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:84350693 original size:45 final size:45
Alignment explanation
Indices: 84350626--84350849 Score: 229
Period size: 45 Copynumber: 4.9 Consensus size: 45
84350616 CGATATCTAC
* * *
84350626 TATCTTTGATCTGCTTCCCGTCTAATACAGAGACGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
*
84350671 TATCTTCGATCTGCTCCTCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * *
84350716 TATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
* * * * * * * * *
84350761 CATCTTGGATCTGCT--TCGATGTAA-ACACATGAAGGTCAGATCTAT
1 TATCTTCGATCTGCTCCCCG-TCTAATACAGA-G-ATGCCAAATCTGT
*
84350806 TATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATC
1 TA--TCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
84350850 ATCTTGGATC
Statistics
Matches: 142, Mismatches: 29, Indels: 14
0.77 0.16 0.08
Matches are distributed among these distances:
43 6 0.04
44 5 0.04
45 102 0.72
47 18 0.13
48 5 0.04
49 6 0.04
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
Found at i:84350918 original size:78 final size:78
Alignment explanation
Indices: 84350789--84351083 Score: 430
Period size: 78 Copynumber: 3.8 Consensus size: 78
84350779 ATGTAAACAC
** * *
84350789 ATGAAGGTCAGATCTATTATGTCTTCGATCTACTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
*
84350854 TGGATCTGCTTCA
66 TGGATCTACTTCA
* *
84350867 ATGAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATC
*
84350931 TTGGATCCACTTCA
65 TTGGATCTACTTCA
* * * *
84350945 ATGAAGGTCAGATCTGCTGTGTCTTCAATCTGCTCCCTGTCTAATATAGAGATACCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
84351010 TGGATCTACTTCA
66 TGGATCTACTTCA
* * * *
84351023 ATAAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATC
84351084 TGTTTCTTCG
Statistics
Matches: 194, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
77 2 0.01
78 190 0.98
79 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
TGGATCTACTTCA
Found at i:84362893 original size:17 final size:17
Alignment explanation
Indices: 84362871--84362903 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
84362861 GATATGATAC
84362871 TAAAAT-TATTAAAAAAT
1 TAAAATATA-TAAAAAAT
84362888 TAAAATATATAAAAAA
1 TAAAATATATAAAAAA
84362904 AGGAAACATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATATAAAAAAT
Found at i:84362904 original size:18 final size:17
Alignment explanation
Indices: 84362871--84362904 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
84362861 GATATGATAC
*
84362871 TAAAATTATTAAAAAAT
1 TAAAATTATAAAAAAAT
84362888 TAAAATATATAAAAAAA
1 TAAAAT-TATAAAAAAA
84362905 GGAAACATGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAATTATAAAAAAAT
Found at i:84363170 original size:22 final size:21
Alignment explanation
Indices: 84363135--84363210 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
84363125 AAAAGGTATC
* *
84363135 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
84363156 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
84363179 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
84363198 TGC-AATCATATCT
1 TACAAATCATATCT
84363211 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:84363195 original size:19 final size:19
Alignment explanation
Indices: 84363171--84363258 Score: 155
Period size: 19 Copynumber: 4.8 Consensus size: 19
84363161 AATCATATCT
84363171 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
84363190 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
84363208 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
84363225 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
84363244 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
84363259 TATTGAAGAT
Statistics
Matches: 66, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 34 0.52
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:84363227 original size:35 final size:37
Alignment explanation
Indices: 84363164--84363258 Score: 144
Period size: 35 Copynumber: 2.6 Consensus size: 37
84363154 ATTACAAAAT
84363164 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
84363200 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
84363235 CATATCATATCTAAGATTGCATAT
1 CATATCATATCTAAGATTG-ATAT
84363259 TATTGAAGAT
Statistics
Matches: 54, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.41
36 19 0.35
37 10 0.19
38 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:84363258 original size:14 final size:15
Alignment explanation
Indices: 84363185--84363240 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
84363175 AGATTGCATA
84363185 TCATATCTAAGATTG
1 TCATATCTAAGATTG
84363200 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
84363218 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
84363235 -CATATC
1 TCATATC
84363241 ATATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:84363417 original size:21 final size:20
Alignment explanation
Indices: 84363380--84363418 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
84363370 TTGGACTTCA
**
84363380 TTTTTTTTTGGGTTTATTAT
1 TTTTTTTTTGGACTTATTAT
84363400 TTTTGTTTTTGGACTTATT
1 TTTT-TTTTTGGACTTATT
84363419 TCTGGGCCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTGGACTTATTAT
Found at i:84366492 original size:18 final size:19
Alignment explanation
Indices: 84366449--84366493 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
84366439 TTTAAAAGTG
*
84366449 CTTTTGAAGCCAAAAACAT
1 CTTTTCAAGCCAAAAACAT
* *
84366468 ATTTTCAAGCC-AAATCAT
1 CTTTTCAAGCCAAAAACAT
84366486 CTTTTCAA
1 CTTTTCAA
84366494 ATTGGCTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (19 bp):
CTTTTCAAGCCAAAAACAT
Found at i:84372325 original size:41 final size:41
Alignment explanation
Indices: 84372156--84372313 Score: 168
Period size: 40 Copynumber: 3.9 Consensus size: 41
84372146 GGGTCTAAAT
84372156 CCGAGCTTGGTCTCGAAGGG-TTTTGAGCCAGTGCTAATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* * * * *
84372196 CCGAACTTAGTTTCGAAGGGC-TTAGAGCCAGTG-TCATAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
* *
84372235 CCG-GACTTAGT-TCCGAAGGGCCTTTGAGCCAGTGGTCTAAT--
1 CCGAG-CTTGGTCT-CGAAGGGCTTTTGAGCCAGT-G-CTAATAA
84372276 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
1 CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAA
84372314 GAATCGGGCT
Statistics
Matches: 99, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
38 1 0.01
39 26 0.26
40 39 0.39
41 28 0.28
42 2 0.02
43 3 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (41 bp):
CCGAGCTTGGTCTCGAAGGGCTTTTGAGCCAGTGCTAATAA
Found at i:84385413 original size:18 final size:19
Alignment explanation
Indices: 84385376--84385415 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
84385366 ATTATGTATT
84385376 TGAATAGAAATAAAAGAAA
1 TGAATAGAAATAAAAGAAA
* *
84385395 TGAATAGGAA-AAGAGAAA
1 TGAATAGAAATAAAAGAAA
84385413 TGA
1 TGA
84385416 GAAACATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (19 bp):
TGAATAGAAATAAAAGAAA
Found at i:84385506 original size:6 final size:6
Alignment explanation
Indices: 84385498--84385542 Score: 72
Period size: 6 Copynumber: 7.3 Consensus size: 6
84385488 CTAAAAGTGG
*
84385498 AAATGG AAATGA AAATGA AAATGA AAATGA AAATGA AAATAGA AA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAAT-GA AA
84385543 TGATCCAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
6 33 0.89
7 4 0.11
ACGTcount: A:0.67, C:0.00, G:0.18, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:84385656 original size:26 final size:26
Alignment explanation
Indices: 84385620--84385681 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
84385610 ACATATTTTC
* **
84385620 TCAAATTTTTACCTTGAGAAAAATCA
1 TCAAAATTTTACCAGGAGAAAAATCA
* *
84385646 TCAAAATTTTACCAGGGGTAAAATCA
1 TCAAAATTTTACCAGGAGAAAAATCA
84385672 TCAAAATTTT
1 TCAAAATTTT
84385682 GTTGTGGATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.34
Consensus pattern (26 bp):
TCAAAATTTTACCAGGAGAAAAATCA
Found at i:84398234 original size:32 final size:32
Alignment explanation
Indices: 84398198--84398262 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
84398188 TGTATGCATT
84398198 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
84398230 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
84398262 T
1 T
84398263 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:84407620 original size:16 final size:16
Alignment explanation
Indices: 84407595--84407641 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
84407585 TAACCCTATA
*
84407595 TATATATTTTTATTAT
1 TATATTTTTTTATTAT
84407611 TATATTTTTTTA-TAT
1 TATATTTTTTTATTAT
*
84407626 TGTTATTTGTTTTATT
1 T-ATATTT-TTTTATT
84407642 TTTAACCTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 4 0.15
16 16 0.62
17 5 0.19
18 1 0.04
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.72
Consensus pattern (16 bp):
TATATTTTTTTATTAT
Found at i:84407626 original size:18 final size:18
Alignment explanation
Indices: 84407601--84407723 Score: 69
Period size: 20 Copynumber: 6.7 Consensus size: 18
84407591 TATATATATA
84407601 TTTT-TATTATTATATTT
1 TTTTATATTATTATATTT
* *
84407618 TTTTATATTGTTAT-TTG
1 TTTTATATTATTATATTT
84407635 TTTTAT-TT-TTA-ACCTTAT
1 TTTTATATTATTATA--TT-T
84407653 TTTTATATTA-TATATTAT
1 TTTTATATTATTATATT-T
* *
84407671 ATAATTATTTTATTATATATT
1 -T-TTTATATTATTATAT-TT
*
84407692 ATTTATATTATTATTATTT
1 TTTTATATTATTA-TATTT
*
84407711 ATTATATATTATT
1 -TTTTATATTATT
84407724 TTCACAAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 25
0.70 0.09 0.21
Matches are distributed among these distances:
15 3 0.04
16 2 0.02
17 14 0.17
18 18 0.22
19 17 0.21
20 21 0.26
21 6 0.07
22 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTATATTATTATATTT
Found at i:84407689 original size:25 final size:25
Alignment explanation
Indices: 84407653--84407722 Score: 83
Period size: 25 Copynumber: 2.8 Consensus size: 25
84407643 TTAACCTTAT
84407653 TTTTA-TATTATATATTATATAATTA
1 TTTTATTATTATATATTATAT-ATTA
84407678 TTTTATTA-TATATTATT-TATATTA
1 TTTTATTATTATA-TATTATATATTA
84407702 TTATTATTTATTATATATTAT
1 TT-TTA-TTATTATATATTAT
84407723 TTTCACAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
24 6 0.15
25 15 0.38
26 13 0.33
27 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTATTATTATATATTATATATTA
Found at i:84407694 original size:3 final size:3
Alignment explanation
Indices: 84407649--84407907 Score: 80
Period size: 3 Copynumber: 84.0 Consensus size: 3
84407639 ATTTTTAACC
* *
84407649 TTA TTT TTA -TA TTA TATA TTA -TA TAA TTA TT- TTA TTA TATA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
**
84407693 TT- TATA TTA TTA TTA TTTA TTA TATA TTA TT- TTCA CAAA TTA TTA
1 TTA T-TA TTA TTA TTA -TTA TTA T-TA TTA TTA TT-A -TTA TTA TTA
* * * *
84407738 TT- TTA -CA TTA TTA TTTA TATA TTA TTG TTA -TA TTT TTA CTT- GTA
1 TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA TTA TTA TTA -TTA TTA
* * *
84407782 TTA TATA TTA TATA TTA TTT TTT TTA CATA TATA CTT- TTA -TA TTA
1 TTA T-TA TTA T-TA TTA TTA TTA TTA -TTA T-TA -TTA TTA TTA TTA
*
84407827 TATA TTA TAA TTA TT- TTA TTA TATA TTA TTA TGTCA TT- TT- TTA -TA
1 T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA T-T-A TTA TTA TTA TTA
* * *
84407872 TTA TTA TACA TTT TTA TCTA TATA TTA TTA TCA TTA
1 TTA TTA T-TA TTA TTA T-TA T-TA TTA TTA TTA TTA
84407908 AAGGTTTTTA
Statistics
Matches: 192, Mismatches: 29, Indels: 70
0.66 0.10 0.24
Matches are distributed among these distances:
2 27 0.14
3 113 0.59
4 49 0.26
5 3 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:84407735 original size:30 final size:29
Alignment explanation
Indices: 84407649--84407756 Score: 86
Period size: 29 Copynumber: 3.8 Consensus size: 29
84407639 ATTTTTAACC
*
84407649 TTATTT-TTATAT-TATATATTATATAATTA
1 TTATTTATTATATAT-TAT-TTATAAAATTA
**
84407678 -T-TTTATTATATATTATTTATATTATTA
1 TTATTTATTATATATTATTTATAAAATTA
84407705 TTATTTATTATATATTATTT-TCACAAATTA
1 TTATTTATTATATATTATTTAT-A-AAATTA
*
84407735 TTA-TT-TTACATTATTATTTATA
1 TTATTTATTATA-TATTATTTATA
84407757 TATTATTGTT
Statistics
Matches: 67, Mismatches: 4, Indels: 16
0.77 0.05 0.18
Matches are distributed among these distances:
27 13 0.19
28 16 0.24
29 30 0.45
30 8 0.12
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (29 bp):
TTATTTATTATATATTATTTATAAAATTA
Found at i:84407737 original size:45 final size:46
Alignment explanation
Indices: 84407658--84407762 Score: 126
Period size: 45 Copynumber: 2.3 Consensus size: 46
84407648 CTTATTTTTA
** *
84407658 TATTATATATTATATAATTATTTTATTATATATTA-TTTATATTAT
1 TATTATATATTATATAATTATTTTAAAATATATTATTTTACATTAT
*
84407703 TATTATTTATTATAT-ATTATTTTCACAAAT-TATTATTTTACATTAT
1 TATTATATATTATATAATTATTTT-A-AAATATATTATTTTACATTAT
84407749 TATTTATATATTAT
1 TA-TTATATATTAT
84407763 TGTTATATTT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
44 8 0.16
45 20 0.39
46 13 0.25
47 10 0.20
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (46 bp):
TATTATATATTATATAATTATTTTAAAATATATTATTTTACATTAT
Found at i:84407804 original size:30 final size:29
Alignment explanation
Indices: 84407655--84407856 Score: 118
Period size: 28 Copynumber: 6.8 Consensus size: 29
84407645 AACCTTATTT
84407655 TTATATTATATATTATATAATTATTTTATTA
1 TTATATTATATATTATAT-ATTATTTT-TTA
*
84407686 -TATATTATTTATATTAT-TATTATTTATTA
1 TTATATTA--TATATTATATATTATTTTTTA
* *
84407715 -TATATTAT-T-TTCACAAATTATTATTTTACA
1 TTATATTATATATT-ATATATTATT-TTTT--A
*
84407745 TTATTATTTATATATTAT-TGTTATATTTTTA
1 TTA-TA-TTATATATTATATATTAT-TTTTTA
*
84407776 CTTGTATTATATATTATATATTATTTTTT-
1 -TTATATTATATATTATATATTATTTTTTA
* * * *
84407805 TTACA-TATATACTTTTATATTATATATTA
1 TTATATTATATA-TTATATATTATTTTTTA
*
84407834 -TA-ATTATTTTATTATATATTATT
1 TTATATTA-TATATTATATATTATT
84407857 ATGTCATTTT
Statistics
Matches: 135, Mismatches: 17, Indels: 41
0.70 0.09 0.21
Matches are distributed among these distances:
25 2 0.01
26 2 0.01
27 14 0.10
28 33 0.24
29 13 0.10
30 31 0.23
31 11 0.08
32 12 0.09
33 12 0.09
34 3 0.02
35 2 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (29 bp):
TTATATTATATATTATATATTATTTTTTA
Done.