Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 265 of 295
Found at i:84714685 original size:16 final size:16
Alignment explanation
Indices: 84714666--84714707 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
84714656 ACTATTCTCG
84714666 AACAAAAATTATTCTA
1 AACAAAAATTATTCTA
* *
84714682 AACAACAACTATTCTA
1 AACAAAAATTATTCTA
*
84714698 AACAAGAATT
1 AACAAAAATT
84714708 GTTTCTTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.55, C:0.17, G:0.02, T:0.26
Consensus pattern (16 bp):
AACAAAAATTATTCTA
Found at i:84716670 original size:17 final size:17
Alignment explanation
Indices: 84716642--84716682 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
84716632 ATACAAAAGA
84716642 AAATGT-ATATATTCTT
1 AAATGTAATATATTCTT
84716658 AAATGTAATATATTCTT
1 AAATGTAATATATTCTT
84716675 AAATGTAA
1 AAATGTAA
84716683 AACAAACACT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (17 bp):
AAATGTAATATATTCTT
Found at i:84717327 original size:66 final size:66
Alignment explanation
Indices: 84717249--84717415 Score: 182
Period size: 66 Copynumber: 2.5 Consensus size: 66
84717239 GTGGCGTTTG
* * *
84717249 AGACCATAACAATCGACTTCTCTTTTGAGAATAACACGTATTTGAGAGT-AACAGAAA-TGGTGC
1 AGACCACAACAATCGACTTCTCTTTTGAGAATAACACGAATATGAGAGTGAA-A-AAAGTGGTG-
84717312 T-TA
63 TATA
* * **
84717315 AGACCACAACAATTGAATTCTCTTTTGAGAATAACTTGAATATGAGAGTGAAAAAAGTGGTGTAT
1 AGACCACAACAATCGACTTCTCTTTTGAGAATAACACGAATATGAGAGTGAAAAAAGTGGTGTAT
84717380 A
66 A
*
84717381 AGACCACAACAATCAACTT-TCCTCTTT-AGAATAAC
1 AGACCACAACAATCGACTTCT-CT-TTTGAGAATAAC
84717416 TTGTAAGAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
65 5 0.06
66 76 0.88
67 5 0.06
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (66 bp):
AGACCACAACAATCGACTTCTCTTTTGAGAATAACACGAATATGAGAGTGAAAAAAGTGGTGTAT
A
Found at i:84718948 original size:24 final size:24
Alignment explanation
Indices: 84718921--84718969 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
84718911 CATTATAAGT
84718921 ATTCTCATCCCCATTCACAGGTTG
1 ATTCTCATCCCCATTCACAGGTTG
84718945 ATTCTCATCCCCATTCACAGGTTG
1 ATTCTCATCCCCATTCACAGGTTG
84718969 A
1 A
84718970 ATTTGTGGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (24 bp):
ATTCTCATCCCCATTCACAGGTTG
Found at i:84720308 original size:40 final size:39
Alignment explanation
Indices: 84720217--84720308 Score: 89
Period size: 40 Copynumber: 2.4 Consensus size: 39
84720207 TCAACTCCGA
* *
84720217 CCAACCCAACACACCATGTGGGGATAAAATTGACCTACT
1 CCAACCCAACACACCATATGGGGATAAAATCGACCTACT
* ** * *
84720256 -CATCCCTGCACACCGTATATGGGGATATAATCGACCTATT
1 CCAACCCAACACACC--ATATGGGGATAAAATCGACCTACT
84720296 CCAACCC-ACACAC
1 CCAACCCAACACAC
84720309 GATAAGGTAC
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
38 11 0.27
40 25 0.61
41 5 0.12
ACGTcount: A:0.33, C:0.34, G:0.14, T:0.20
Consensus pattern (39 bp):
CCAACCCAACACACCATATGGGGATAAAATCGACCTACT
Found at i:84727768 original size:17 final size:18
Alignment explanation
Indices: 84727736--84727777 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
84727726 TCGTGTGGTT
*
84727736 CACCCGTGTGGGCCCACA
1 CACCCATGTGGGCCCACA
84727754 CACCCATGT-GGCCCACA
1 CACCCATGTGGGCCCACA
84727771 CGACCCA
1 C-ACCCA
84727778 CTTGCCTGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.21, C:0.48, G:0.21, T:0.10
Consensus pattern (18 bp):
CACCCATGTGGGCCCACA
Found at i:84730491 original size:28 final size:28
Alignment explanation
Indices: 84730451--84730504 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
84730441 TACTTAGACT
*
84730451 ATATTTAAATTCCATTATAAAACTAATC
1 ATATTTAAATTCCATCATAAAACTAATC
84730479 ATATTTAAATTCCATCATAAAACTAA
1 ATATTTAAATTCCATCATAAAACTAA
84730505 CCAAGAAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (28 bp):
ATATTTAAATTCCATCATAAAACTAATC
Found at i:84734819 original size:26 final size:24
Alignment explanation
Indices: 84734789--84734838 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
84734779 AAATAAAAAA
*
84734789 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
84734815 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
84734839 TAAAATAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:84734943 original size:15 final size:16
Alignment explanation
Indices: 84734913--84734945 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
84734903 AAATGGTTAT
84734913 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
84734930 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
84734945 A
1 A
84734946 AAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:84744608 original size:18 final size:20
Alignment explanation
Indices: 84744582--84744618 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
84744572 CAAACACCCC
84744582 ATGTGC-TTTCT-TCTTTTT
1 ATGTGCTTTTCTCTCTTTTT
*
84744600 ATGTTCTTTTCTCTCTTTT
1 ATGTGCTTTTCTCTCTTTT
84744619 ATAACGTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 5 0.31
19 5 0.31
20 6 0.38
ACGTcount: A:0.05, C:0.19, G:0.08, T:0.68
Consensus pattern (20 bp):
ATGTGCTTTTCTCTCTTTTT
Found at i:84745341 original size:23 final size:23
Alignment explanation
Indices: 84745294--84745341 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
84745284 ATTGCAATTT
**
84745294 AAAAATATAATTTAATTAGTCAA
1 AAAAATATAATTTAATTAGAAAA
*
84745317 AAAAATATAATTTAATTTGAAAA
1 AAAAATATAATTTAATTAGAAAA
84745340 AA
1 AA
84745342 GTTATTTTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAAATATAATTTAATTAGAAAA
Found at i:84745399 original size:19 final size:19
Alignment explanation
Indices: 84745364--84745403 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
84745354 TTGAAATCGT
*
84745364 AATTTAAAATTATATTTTG
1 AATTTAAAAATATATTTTG
84745383 AATTTAAAAA-ATAATTTTG
1 AATTTAAAAATAT-ATTTTG
84745402 AA
1 AA
84745404 GCCTCAATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 2 0.11
19 17 0.89
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
AATTTAAAAATATATTTTG
Found at i:84746098 original size:25 final size:23
Alignment explanation
Indices: 84746045--84746098 Score: 54
Period size: 25 Copynumber: 2.2 Consensus size: 23
84746035 TAGGTTTTTT
*
84746045 ATTTTTGTAAAGATTAGGATTAT
1 ATTTTTGTAAAGATTAGGATTAG
* *
84746068 AGTTTTTTTAAAGACTTAGGGTTAGG
1 A-TTTTTGTAAAGA-TTAGGATTA-G
84746094 ATTTT
1 ATTTT
84746099 AAAGGTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 1 0.04
24 11 0.44
25 12 0.48
26 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (23 bp):
ATTTTTGTAAAGATTAGGATTAG
Found at i:84755042 original size:18 final size:18
Alignment explanation
Indices: 84755019--84755060 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
84755009 AAAACAAAAC
*
84755019 TTGAGAAAATTTAGAGAA
1 TTGAGAAAATTGAGAGAA
*
84755037 TTGAGAAAATTGAGAGAG
1 TTGAGAAAATTGAGAGAA
84755055 TTGAGA
1 TTGAGA
84755061 GTTTAGAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (18 bp):
TTGAGAAAATTGAGAGAA
Found at i:84755058 original size:9 final size:9
Alignment explanation
Indices: 84755019--84755080 Score: 54
Period size: 9 Copynumber: 6.9 Consensus size: 9
84755009 AAAACAAAAC
*
84755019 TTGAGAAAA
1 TTGAGAGAA
*
84755028 TTTAGAGAA
1 TTGAGAGAA
*
84755037 TTGAGAAAA
1 TTGAGAGAA
*
84755046 TTGAGAGAG
1 TTGAGAGAA
*
84755055 TTGAGAG-T
1 TTGAGAGAA
*
84755063 TTAGAAAGAA
1 TT-GAGAGAA
84755073 TTGAGAGA
1 TTGAGAGA
84755081 GTTGGATTTG
Statistics
Matches: 41, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
8 2 0.05
9 37 0.90
10 2 0.05
ACGTcount: A:0.45, C:0.00, G:0.29, T:0.26
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:84755061 original size:27 final size:27
Alignment explanation
Indices: 84755032--84755092 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
84755022 AGAAAATTTA
*
84755032 GAGAATTGAG-AA-AATTGAGAGAGTT
1 GAGAGTTGAGAAAGAATTGAGAGAGTT
*
84755057 GAGAGTTTAGAAAGAATTGAGAGAGTT
1 GAGAGTTGAGAAAGAATTGAGAGAGTT
*
84755084 G-GATTTGAG
1 GAGAGTTGAG
84755093 TGAACAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 8 0.27
26 8 0.27
27 14 0.47
ACGTcount: A:0.39, C:0.00, G:0.34, T:0.26
Consensus pattern (27 bp):
GAGAGTTGAGAAAGAATTGAGAGAGTT
Found at i:84758179 original size:9 final size:9
Alignment explanation
Indices: 84758165--84758195 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
84758155 GATTAAGTAA
84758165 AATTAAATT
1 AATTAAATT
84758174 AATTAAATT
1 AATTAAATT
84758183 AATTAAAATT
1 AATT-AAATT
84758193 AAT
1 AAT
84758196 ATGATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (9 bp):
AATTAAATT
Found at i:84761438 original size:16 final size:16
Alignment explanation
Indices: 84761417--84761456 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
84761407 ACTATGGTAA
*
84761417 TAATTACATTATTTTG
1 TAATTACATTATCTTG
84761433 TAATTACATTATCTTG
1 TAATTACATTATCTTG
84761449 TAATTACA
1 TAATTACA
84761457 AAGAATTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (16 bp):
TAATTACATTATCTTG
Found at i:84761822 original size:13 final size:13
Alignment explanation
Indices: 84761806--84761830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
84761796 ATATTTTTTA
84761806 AATAAATTTTAAT
1 AATAAATTTTAAT
84761819 AATAAATTTTAA
1 AATAAATTTTAA
84761831 AGTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAAATTTTAAT
Found at i:84765067 original size:21 final size:22
Alignment explanation
Indices: 84765041--84765087 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
84765031 CTCTGCTCAA
*
84765041 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
84765062 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
84765084 ACTC
1 ACTC
84765088 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:84768234 original size:93 final size:93
Alignment explanation
Indices: 84768122--84768292 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
84768112 GCCCATAAGT
* *
84768122 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
84768187 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
84768215 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
84768280 CGAGTTCGGATGC
66 CGAGTTCGGATGC
84768293 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:84768289 original size:46 final size:46
Alignment explanation
Indices: 84768114--84768289 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
84768104 TGTAACCCGC
* * *
84768114 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
84768160 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
84768210 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
84768253 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
84768290 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:84770067 original size:20 final size:22
Alignment explanation
Indices: 84770044--84770099 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
84770034 CCTCCTCCTT
84770044 TTCTTTTTCTTTT-T-TACTTC
1 TTCTTTTTCTTTTCTATACTTC
* *
84770064 TTCTTCTTCTTCTTCTATGCTTC
1 TTCTTTTTCTT-TTCTATACTTC
84770087 TTCTTTTTCTTTT
1 TTCTTTTTCTTTT
84770100 ATTCCCCAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 10 0.33
21 2 0.07
22 3 0.10
23 15 0.50
ACGTcount: A:0.04, C:0.23, G:0.02, T:0.71
Consensus pattern (22 bp):
TTCTTTTTCTTTTCTATACTTC
Found at i:84774530 original size:21 final size:22
Alignment explanation
Indices: 84774504--84774557 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
84774494 CGACCTGTAG
*
84774504 CACGGGCGTGTCCC-AAGGTCA
1 CACGGGCGTGTCCCTAAGATCA
* *
84774525 CACGGGCATGTCCCTTAGATCA
1 CACGGGCGTGTCCCTAAGATCA
*
84774547 CAAGGGCGTGT
1 CACGGGCGTGT
84774558 GAGCTCTACA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (22 bp):
CACGGGCGTGTCCCTAAGATCA
Found at i:84783903 original size:21 final size:21
Alignment explanation
Indices: 84783879--84783930 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
84783869 AAATTTTTTT
**
84783879 ATTTATAATTTGATATAATAA
1 ATTTATAATGAGATATAATAA
* *
84783900 ATTTTTAAGGAGATATAATAA
1 ATTTATAATGAGATATAATAA
84783921 ATTTAATAAT
1 ATTT-ATAAT
84783931 ATATCGTTTA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (21 bp):
ATTTATAATGAGATATAATAA
Found at i:84795251 original size:46 final size:45
Alignment explanation
Indices: 84795197--84795548 Score: 402
Period size: 46 Copynumber: 7.7 Consensus size: 45
84795187 TTCTCTCTTA
** * *
84795197 AATGAAATGTGTAAAACCATGGTTGAAAGCTACCATGGCAACATG
1 AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
** *
84795242 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATA
1 A-ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
** * *
84795288 ATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCGTG
1 A-ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
84795334 ACATGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACGTG
1 A-ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
84795380 ACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGACAACAT-
1 A-ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* * * *
84795425 AACTGGAAATGAACAAGACCATGGTTGAAAGATGCCATGGCAGCGTG
1 AA-T-GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
**
84795472 CAATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTG
1 -AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
* *
84795518 ACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 A-ATG-AAATGAATAAGACCATGGTTGAAAGA
84795549 CACTATGACA
Statistics
Matches: 273, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.00
45 5 0.02
46 264 0.97
47 1 0.00
48 2 0.01
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.20
Consensus pattern (45 bp):
AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
Found at i:84795446 original size:138 final size:138
Alignment explanation
Indices: 84795197--84795558 Score: 496
Period size: 138 Copynumber: 2.6 Consensus size: 138
84795187 TTCTCTCTTA
** * * * * * *
84795197 AATGAAATGTGTAAAACCATGGTTGAAAGCTACCATGGCAACATGATATGAAATGTGTAAGACCA
1 AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAGTAAGACCA
* * ***
84795262 TGGTTGAAAGATACCATGGCAACATAATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
66 TGGTTGAAAGATACCATGACAACATAATAGGAAATGAACAAGACCATGGTTGAAAGATACCATGG
84795327 CAGCGTG-
131 CAGCGTGC
* *
84795334 ACATGAAATGAATAAGACCGTGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACC
1 A-ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAGTAAGACC
*
84795399 ATGGTTGAAAGATACCATGACAACATAACT-GGAAATGAACAAGACCATGGTTGAAAGATGCCAT
65 ATGGTTGAAAGATACCATGACAACATAA-TAGGAAATGAACAAGACCATGGTTGAAAGATACCAT
84795463 GGCAGCGTGC
129 GGCAGCGTGC
*
84795473 AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGACA-GAAAATGAGTAAGACC
1 AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-GAGTAAGACC
* * *
84795537 ATAGTTGAAAGACACTATGACA
65 ATGGTTGAAAGATACCATGACA
84795559 TCATGTCAAA
Statistics
Matches: 199, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
137 6 0.03
138 191 0.96
139 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (138 bp):
AATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAGTAAGACCA
TGGTTGAAAGATACCATGACAACATAATAGGAAATGAACAAGACCATGGTTGAAAGATACCATGG
CAGCGTGC
Found at i:84798346 original size:50 final size:50
Alignment explanation
Indices: 84798290--84798398 Score: 182
Period size: 50 Copynumber: 2.2 Consensus size: 50
84798280 TATACTTTAA
* * *
84798290 ATGTTTGGTAATAGACCTATAATGAATGAATGGGATTGAAATTGTTATGT
1 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
84798340 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
1 ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
*
84798390 ACGTTTGGA
1 ATGTTTGGA
84798399 TTGGTTTTAC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.35
Consensus pattern (50 bp):
ATGTTTGGAAATAGACCTATAATGAATGAATGGGATTGAAATGGTTATGC
Found at i:84802474 original size:14 final size:14
Alignment explanation
Indices: 84802447--84802500 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
84802437 AATTTATTAT
* *
84802447 TTAATTAAAATTAAC
1 TTAATT-AACTTAAA
84802462 TTAATTAACTTAAA
1 TTAATTAACTTAAA
*
84802476 TTAACTAACTTTAATA
1 TTAATTAAC-TTAA-A
84802492 TTAATTAAC
1 TTAATTAAC
84802501 AAGGTTAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 14 0.42
15 10 0.30
16 9 0.27
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (14 bp):
TTAATTAACTTAAA
Found at i:84807980 original size:12 final size:13
Alignment explanation
Indices: 84807963--84807992 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
84807953 TAGCCCAAAT
84807963 AATTT-GTACCTC
1 AATTTGGTACCTC
84807975 AATTTGGTACCTC
1 AATTTGGTACCTC
84807988 AATTT
1 AATTT
84807993 TTTTTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.43
Consensus pattern (13 bp):
AATTTGGTACCTC
Found at i:84809353 original size:12 final size:12
Alignment explanation
Indices: 84809336--84809361 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
84809326 TGTTTCTCGA
84809336 ATTAGATAATTG
1 ATTAGATAATTG
84809348 ATTAGATAATTG
1 ATTAGATAATTG
84809360 AT
1 AT
84809362 CAAACAGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATTAGATAATTG
Found at i:84810580 original size:13 final size:13
Alignment explanation
Indices: 84810562--84810589 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
84810552 CACCTACAAC
84810562 AACAATAACCATA
1 AACAATAACCATA
84810575 AACAATAACCATA
1 AACAATAACCATA
84810588 AA
1 AA
84810590 GTAAGAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.21, G:0.00, T:0.14
Consensus pattern (13 bp):
AACAATAACCATA
Found at i:84811236 original size:19 final size:19
Alignment explanation
Indices: 84811212--84811308 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
84811202 AATCTTTAAG
84811212 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
84811231 GATATGCAATCTTAGACAT
1 GATATGCAATCTTAGATAT
*
84811250 GATA--CAAGCTTAGATAT
1 GATATGCAATCTTAGATAT
84811267 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
84811286 GATATGC-ATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
84811306 GAT
1 GAT
84811309 CTTATAATCT
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.21
18 5 0.07
19 41 0.59
20 9 0.13
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:84816490 original size:1 final size:1
Alignment explanation
Indices: 84816484--84816570 Score: 57
Period size: 1 Copynumber: 87.0 Consensus size: 1
84816474 CTTTTATTTC
* * * * * * * * * *
84816484 AAAAAAAAGAAAAAATAAAAAAATAAAAGAAAAAGAGAAAAAAAAGAAAAAGAAAAAAGAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
84816549 AAGAAAAAAGAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAA
84816571 TGGAGAGGCC
Statistics
Matches: 60, Mismatches: 26, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (1 bp):
A
Found at i:84816498 original size:7 final size:7
Alignment explanation
Indices: 84816486--84816570 Score: 93
Period size: 7 Copynumber: 11.9 Consensus size: 7
84816476 TTTATTTCAA
84816486 AAAAAAG
1 AAAAAAG
*
84816493 AAAAAAT
1 AAAAAAG
84816500 AAAAAA-
1 AAAAAAG
*
84816506 ATAAAAG
1 AAAAAAG
84816513 AAAAAGAG
1 AAAAA-AG
*
84816521 AAAAAAA
1 AAAAAAG
84816528 AGAAAAAG
1 A-AAAAAG
84816536 AAAAAAGAG
1 -AAAAA-AG
84816545 AAAAAAG
1 AAAAAAG
84816552 AAAAAAG
1 AAAAAAG
84816559 -AAAAAG
1 AAAAAAG
84816565 AAAAAA
1 AAAAAA
84816571 TGGAGAGGCC
Statistics
Matches: 67, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
6 11 0.16
7 32 0.48
8 21 0.31
9 3 0.04
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:84816503 original size:6 final size:6
Alignment explanation
Indices: 84816487--84816569 Score: 73
Period size: 6 Copynumber: 13.8 Consensus size: 6
84816477 TTATTTCAAA
* * *
84816487 AAAAAG AAAAAAT AAAAAA ATAAAAG AAAAAG AGAAA- AAAAAG AAAAAG
1 AAAAAG -AAAAAG AAAAAG A-AAAAG AAAAAG AAAAAG AAAAAG AAAAAG
* *
84816536 AAAAA- AGAGA- AAAAAG AAAAAAG AAAAAG AAAAA
1 AAAAAG AAAAAG AAAAAG -AAAAAG AAAAAG AAAAA
84816570 ATGGAGAGGC
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
5 10 0.16
6 37 0.59
7 16 0.25
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.02
Consensus pattern (6 bp):
AAAAAG
Found at i:84816511 original size:22 final size:21
Alignment explanation
Indices: 84816484--84816570 Score: 106
Period size: 23 Copynumber: 4.0 Consensus size: 21
84816474 CTTTTATTTC
*
84816484 AAAAAAAAGAAAAAA-TAAAA
1 AAAAAAAAGAAAAAAGAAAAA
*
84816504 AAATAAAAGAAAAAGAGAAAAA
1 AAAAAAAAGAAAAA-AGAAAAA
84816526 AAAGAAAAAGAAAAAAGAGAAAA
1 AAA-AAAAAGAAAAAAGA-AAAA
84816549 AAGAAAAAAG-AAAAAGAAAAA
1 AA-AAAAAAGAAAAAAGAAAAA
84816570 A
1 A
84816571 TGGAGAGGCC
Statistics
Matches: 59, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
20 13 0.22
21 6 0.10
22 17 0.29
23 22 0.37
24 1 0.02
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (21 bp):
AAAAAAAAGAAAAAAGAAAAA
Found at i:84816570 original size:8 final size:8
Alignment explanation
Indices: 84816485--84816563 Score: 67
Period size: 8 Copynumber: 9.6 Consensus size: 8
84816475 TTTTATTTCA
84816485 AAAAAAAG
1 AAAAAAAG
84816493 AAAAAATA-
1 AAAAAA-AG
*
84816501 AAAAAATAA
1 AAAAAA-AG
84816510 AAGAAAAAG
1 AA-AAAAAG
84816519 AGAAAAAA-
1 A-AAAAAAG
84816527 AAGAAAAAG
1 AA-AAAAAG
84816536 -AAAAAAG
1 AAAAAAAG
84816543 AGAAAAAAG
1 A-AAAAAAG
84816552 -AAAAAAG
1 AAAAAAAG
84816559 AAAAA
1 AAAAA
84816564 GAAAAAATGG
Statistics
Matches: 61, Mismatches: 1, Indels: 18
0.76 0.01 0.22
Matches are distributed among these distances:
7 14 0.23
8 25 0.41
9 17 0.28
10 5 0.08
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:84817636 original size:44 final size:44
Alignment explanation
Indices: 84817579--84818314 Score: 566
Period size: 44 Copynumber: 16.7 Consensus size: 44
84817569 GATGATTTAA
* * *
84817579 CATCTTTGTATTGGCAAAGAGCAGATCGAAGACAACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * * *
84817623 CGTCTCTGAATTGGTAGAGAGCAGATCGAAGATGACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * *
84817667 CATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTA-ATTCGG
1 CATCTCTGTA-TTGGCAGAGAGCAGATCGAAG--ATAAC-AGATTTGG
* * * *
84817714 CTTCCACGTGT-TT-ACATTGA-AGCA-AGTCTAAGAT----GATTTGG
1 CAT-CTC-TGTATTGGCA--GAGAGCAGA-TCGAAGATAACAGATTTGG
* * * *
84817755 CATCTCTGTATTGGCAAAGAGCAAATCGAAGATAGCAGATTTGA
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* *
84817799 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAAATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* *
84817843 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * * *
84817887 CATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTGATTTGC
1 CATCTCTGTA-TTGGCAGAGAGCAGATCGAAG--ATAACAGATTTGG
* * * ** *
84817934 CTTTCACGTGT-TTACGTTGA-AGCA-AGTCTAAGAT----GATTTGG
1 C-ATCTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAACAGATTTGG
* **
84817975 CATCTCTGTATTGGCAGAGAGCAAATCGAAGATAGTAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* *
84818019 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* * * * *
84818063 CATATCTATATTCGGCGGAGAGCAGATCGAAGACATAGCTGATTTGG
1 CATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAACAGATTTGG
* * ** *
84818110 CTTCCACGTGT-TTGCGTTGA-AGCA-AGTCTAAGAT----GATTTGG
1 CAT-CTC-TGTATTG-GCAGAGAGCAGA-TCGAAGATAACAGATTTGG
* * *
84818151 CATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACAGATTTGA
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
* *
84818195 CATCTCTGTATTGACAGAGAGCAGATCGAAGATAATAGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
*
84818239 CGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGATTTGG
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ACAGATTTGG
* * * * *
84818283 CGTTTCTGTTTTGTCAGAGAGCATATCGAAGA
1 CATCTCTGTATTGGCAGAGAGCAGATCGAAGA
84818315 GAAGAACAAT
Statistics
Matches: 557, Mismatches: 88, Indels: 94
0.75 0.12 0.13
Matches are distributed among these distances:
39 17 0.03
40 47 0.08
41 28 0.05
44 310 0.56
45 62 0.11
46 4 0.01
47 64 0.11
48 17 0.03
49 8 0.01
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
CATCTCTGTATTGGCAGAGAGCAGATCGAAGATAACAGATTTGG
Found at i:84817967 original size:220 final size:220
Alignment explanation
Indices: 84817572--84818095 Score: 841
Period size: 220 Copynumber: 2.4 Consensus size: 220
84817562 GATCCAAGAT
* * * * * * *
84817572 GATTTAACATCTTTGTATTGGCAAAGAGCAGATCGAAGACAACAGATTTGGCGTCTCTGAATTGG
1 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGG
*
84817637 TAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
*
84817702 TAGCTAATTCGGCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
131 TAGCTAATTCGCCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
84817767 GGCAAAGAGCAAATCGAAGATAGCA
196 GGCAAAGAGCAAATCGAAGATAGCA
*
84817792 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAAATTTGGCATCTCTGTATTGG
1 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGG
*
84817857 CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
* * * *
84817922 TAGCTGATTTGCCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
131 TAGCTAATTCGCCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
* *
84817987 GGCAGAGAGCAAATCGAAGATAGTA
196 GGCAAAGAGCAAATCGAAGATAGCA
* * * *
84818012 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTCG
1 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATT-G
*
84818077 GCGGAGAGCAGATCGAAGA
65 GCAGAGAGCAGATCGAAGA
84818096 CATAGCTGAT
Statistics
Matches: 279, Mismatches: 24, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
220 261 0.94
221 18 0.06
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (220 bp):
GATTTGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCATCTCTGTATTGG
CAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
TAGCTAATTCGCCTTCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATT
GGCAAAGAGCAAATCGAAGATAGCA
Found at i:84817981 original size:176 final size:176
Alignment explanation
Indices: 84817792--84818270 Score: 771
Period size: 176 Copynumber: 2.7 Consensus size: 176
84817782 GAAGATAGCA
* * * *
84817792 GATTTGACATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAAATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGG
84817857 CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
*
84817922 TAGCTGATTTGCCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGAT
131 TAGCTGATTTGCCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
**
84817968 GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAGTAGATTTGGCATCTCTGTATTGG
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * *
84818033 CAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTCGGCGGAGAGCAGATCGAAGACA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
* *
84818098 TAGCTGATTTGGCTTCCACGTGTTTGCGTTGAAGCAAGTCTAAGAT
131 TAGCTGATTTGCCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
* * *
84818144 GATTTGGCATCTCTGTATTGGTAGAGAGCAAATCGAAGATAACAGATTTGACATCTCTGTATTGA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGG
* * * * *
84818209 CAGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTA-TTGGCAGAGAGCAGATCGAAGA
66 CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGA
84818271 TAGAAGATTT
Statistics
Matches: 278, Mismatches: 25, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
175 20 0.07
176 258 0.93
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (176 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTGG
CAGAGAGCAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACA
TAGCTGATTTGCCTTCCACGTGTTTACGTTGAAGCAAGTCTAAGAT
Found at i:84818201 original size:220 final size:218
Alignment explanation
Indices: 84817579--84818283 Score: 707
Period size: 220 Copynumber: 3.2 Consensus size: 218
84817569 GATGATTTAA
* * * ** * * *
84817579 CATCTTTGTATTGGCAAAGAGCAGATCGAAGACAACAGATTTGGCGTCTCTGA-ATTGGTAGAGA
1 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCT-ATATTGGCAGAGA
* * * * *
84817643 GCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTA
65 GCAGATCAAACATGACAGATTTGGCATCTCCGTATTTGGCGGAGA-CAGA-CGAAGACATAGATG
* * * * * * *
84817708 ATTCGGCT-TCCACGTGTTTACATTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAA
128 ATTTGCCTAT-CACGTGTTTACGTAGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAG
* *
84817772 AGAGCAAATCGAAGATAGCAGATTTGA
192 AGAGCAAATCGAAGATAGTAGATTTGG
* * * *
84817799 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATAACAAATTTGGCATCTCTGTATTGGCAGAGAG
1 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTGGCAGAGAG
* * *
84817864 CAGATCAAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTGA
66 CAGATCAAACATGACAGATTTGGCATCTCCGTATTTGGCGGAGA-CAGA-CGAAGACATAGATGA
* * * *
84817929 TTTGCCTTTCACGTGTTTACGTTGAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTGGCAGAG
129 TTTGCCTATCACGTGTTTACGTAGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGAG
84817994 AGCAAATCGAAGATAGTAGATTTGG
194 AGCAAATCGAAGATAGTAGATTTGG
*
84818019 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTCGGCGGAGA
1 CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATT-GGCAGAGA
* * * ** *
84818084 GCAGATCGAAGACAT-AGCTGATTTGGCTTC-CACGTGTTT-GCGTTGA-AG-C-AAGTC-TAAG
65 GCAGATC-AA-ACATGA-CAGATTTGGCATCTC-CGTATTTGGCGGAGACAGACGAAGACAT-AG
* * * *
84818142 ATGATTTGGC-ATCTC-TGTATT-GGTAGAGAGCAAATCGAAGATAACAGATTTGACATCTCTGT
125 ATGATTTGCCTATCACGTGT-TTACGTAGA-AGCAAATCGAAGAT----GATTTGGCATCTCTGT
* * *
84818204 ATTGACAGAGAGCAGATCGAAGATAATAGATTTGG
184 ATTGGCAGAGAGCAAATCGAAGATAGTAGATTTGG
* *
84818239 CGTCTCTGTATTGGCAGAGAGCAGATCGAAGATAGA-AGATTTGGC
1 CATCTCTGTATTGGCAGAGAGCAGATCAAAGAT-GACAGATTTGGC
84818284 GTTTCTGTTT
Statistics
Matches: 427, Mismatches: 43, Indels: 30
0.85 0.09 0.06
Matches are distributed among these distances:
215 7 0.02
216 18 0.04
217 14 0.03
218 1 0.00
220 342 0.80
221 17 0.04
222 9 0.02
223 19 0.04
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.27
Consensus pattern (218 bp):
CATCTCTGTATTGGCAGAGAGCAGATCAAAGATGACAGATTTGGCATATCTATATTGGCAGAGAG
CAGATCAAACATGACAGATTTGGCATCTCCGTATTTGGCGGAGACAGACGAAGACATAGATGATT
TGCCTATCACGTGTTTACGTAGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGAGAG
CAAATCGAAGATAGTAGATTTGG
Found at i:84818512 original size:44 final size:44
Alignment explanation
Indices: 84818371--84818645 Score: 155
Period size: 44 Copynumber: 6.2 Consensus size: 44
84818361 TAAGATGATA
* * * *
84818371 TGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATC
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * * ** *** **
84818417 TGACATTCCTGTGCTTACAGCGAAGCAGATCAAAGATTTTA-ACA
1 TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAGATT
* *
84818461 TGACATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGCAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
* * *
84818505 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATC
1 TGGCATCCCTGTGTTTACAGGGAACAGATTGAAG--ATAGCAGATT
* * * ** * **
84818551 TGACATTCCTGTGCTTACAACGAAGCAGATTAAAGATTTCAGCA--
1 TGGCATCCCTGTGTTTACAGGGAA-CAGATTGAAGATAGCAG-ATT
* * *
84818595 TGGCATCGCTGTGTTTATAGGGAACA-AGTTGAAGATAGTAGATT
1 TGGCATCCCTGTGTTTACAGGGAACAGA-TTGAAGATAGCAGATT
84818639 TGGCATC
1 TGGCATC
84818646 TCCATATTCG
Statistics
Matches: 171, Mismatches: 47, Indels: 24
0.71 0.19 0.10
Matches are distributed among these distances:
42 3 0.02
43 20 0.12
44 74 0.43
45 8 0.05
46 49 0.29
47 17 0.10
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TGGCATCCCTGTGTTTACAGGGAACAGATTGAAGATAGCAGATT
Found at i:84818539 original size:134 final size:134
Alignment explanation
Indices: 84818371--84818722 Score: 490
Period size: 134 Copynumber: 2.6 Consensus size: 134
84818361 TAAGATGATA
* * *
84818371 TGGCATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
* *
84818436 GCGAAGCAGATCAAAGATTTTAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
66 ACGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
84818501 GATT
131 GATT
84818505 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
1 TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
* * * * *
84818570 ACGAAGCAGATTAAAGATTTCAGCATGGCATCGCTGTGTTTATAGGGAACAAGTTGAAGATAGTA
66 ACGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
84818635 GATT
131 GATT
** * ** * * * *
84818639 TGGCATCTCCATAT-TCGACAGGGAGCAGATTAAAGACATAGTAGATCTGACCTTCATGTGTTTA
1 TGGCATC-CC-TATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTA
* *
84818703 CATCGAAGCAGATCCAAGAT
64 CAACGAAGCAGATCAAAGAT
84818723 GATAGATTTT
Statistics
Matches: 194, Mismatches: 22, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
134 131 0.68
135 60 0.31
136 3 0.02
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (134 bp):
TGGCATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGACATTCCTGTGCTTACA
ACGAAGCAGATCAAAGATTTCAACATGACATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCA
GATT
Found at i:84818569 original size:46 final size:46
Alignment explanation
Indices: 84818374--84818569 Score: 181
Period size: 44 Copynumber: 4.3 Consensus size: 46
84818364 GATGATATGG
*
84818374 CATTCCTGTGTTTACAGGGAACAGATCGAAGACACAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
* * * ***
84818420 CATTCCTGTGCTTACAGCGAAGCAGATC-AA-AGATTTTA-A-CATGA
1 CATTCCTGTGTTTACAGGGAA-CAGATCGAAGACATAGCAGATC-TGA
* * * * *
84818464 CATCCCTGTGTTTATAGGGAACA-AGTTGAAG--ATAGCAGATTTGG
1 CATTCCTGTGTTTACAGGGAACAGA-TCGAAGACATAGCAGATCTGA
* *
84818508 CATCCCTATGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
1 CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
*
84818554 CATTCCTGTGCTTACA
1 CATTCCTGTGTTTACA
84818570 ACGAAGCAGA
Statistics
Matches: 115, Mismatches: 25, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
42 1 0.01
43 7 0.06
44 52 0.45
45 4 0.03
46 45 0.39
47 6 0.05
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (46 bp):
CATTCCTGTGTTTACAGGGAACAGATCGAAGACATAGCAGATCTGA
Found at i:84818789 original size:45 final size:45
Alignment explanation
Indices: 84818709--84818857 Score: 156
Period size: 45 Copynumber: 3.3 Consensus size: 45
84818699 TTTACATCGA
* * * * *
84818709 AGCAGATCCAAGATGATAGATTTTGCATCTTTGTATTAGACGGGG
1 AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
*
84818754 AGCAAATCGGAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
** * ** * *
84818799 AGCAGTTTGAAGA-AGCAAATTTGGCGTCTCTGTATTAGACGGGG
1 AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
* *
84818843 AGCAGATCAAAGATA
1 AGCAAATCGAAGATA
84818858 GCAGATATCG
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
44 37 0.43
45 49 0.57
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.27
Consensus pattern (45 bp):
AGCAAATCGAAGATAATAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:84819246 original size:19 final size:19
Alignment explanation
Indices: 84819218--84819315 Score: 137
Period size: 19 Copynumber: 5.2 Consensus size: 19
84819208 AATCTTTAAG
*
84819218 GATATGCAATCTTAGATAT
1 GATATACAATCTTAGATAT
84819237 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
84819256 G--ATACAACCTTAGATAT
1 GATATACAATCTTAGATAT
84819273 GATATACAATCTTAGATAT
1 GATATACAATCTTAGATAT
*
84819292 GATATGCAATCTTGAAGATAT
1 GATATACAATCTT--AGATAT
84819313 GAT
1 GAT
84819316 CTTGTAATCT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 16 0.23
19 46 0.65
21 9 0.13
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (19 bp):
GATATACAATCTTAGATAT
Found at i:84819248 original size:36 final size:35
Alignment explanation
Indices: 84819208--84819315 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
84819198 ATGGAAATAT
84819208 AATCTTTAAGGATATGCAATCTTAGATATGATATAC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
*
84819244 AATC-TT-AGATATGATACAACCTTAGATATGATATAC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
84819280 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
84819316 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.35
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:84822966 original size:32 final size:32
Alignment explanation
Indices: 84822906--84822966 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
84822896 ACATTATTAT
*
84822906 CTTTTAATATATATATGTATCGTATATACATC
1 CTTTTAATATATATATGTATCATATATACATC
*
84822938 CTTTTAATATATATATTTAT-ATATTATAC
1 CTTTTAATATATATATGTATCATA-TATAC
84822967 TTCATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 2 0.08
32 24 0.92
ACGTcount: A:0.36, C:0.10, G:0.03, T:0.51
Consensus pattern (32 bp):
CTTTTAATATATATATGTATCATATATACATC
Found at i:84823391 original size:15 final size:15
Alignment explanation
Indices: 84823371--84823409 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
84823361 CTATATTATG
84823371 TATATATTTCATATA
1 TATATATTTCATATA
* *
84823386 TATATATATCATGTA
1 TATATATTTCATATA
*
84823401 TATACATTT
1 TATATATTT
84823410 TAATAGCTCA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.51
Consensus pattern (15 bp):
TATATATTTCATATA
Found at i:84823501 original size:25 final size:25
Alignment explanation
Indices: 84823438--84823501 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
84823428 ATATATATGT
*
84823438 ATATTATGTATAT-TTTCTTTTTTA
1 ATATTATGTATATATTTCTTTTCTA
* *
84823462 ATACTACGTATATATTT-TATTTCTA
1 ATATTATGTATATATTTCT-TTTCTA
*
84823487 TTATTATGTATATAT
1 ATATTATGTATATAT
84823502 CTTAATGCAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
24 12 0.38
25 20 0.62
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.59
Consensus pattern (25 bp):
ATATTATGTATATATTTCTTTTCTA
Found at i:84823531 original size:20 final size:22
Alignment explanation
Indices: 84823491--84823532 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
84823481 TTTCTATTAT
84823491 TATGTATATATCTTAATGCATC
1 TATGTATATATCTTAATGCATC
*
84823513 TATGTGTATATC-T-ATGCATC
1 TATGTATATATCTTAATGCATC
84823533 ATTTTATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 7 0.37
21 1 0.05
22 11 0.58
ACGTcount: A:0.29, C:0.14, G:0.12, T:0.45
Consensus pattern (22 bp):
TATGTATATATCTTAATGCATC
Found at i:84828346 original size:3 final size:3
Alignment explanation
Indices: 84828340--84828388 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
84828330 AAATCCAAAA
*
84828340 AAG AAG AAG AAG GAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
84828388 A
1 A
84828389 TCATGGAAAG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:84830190 original size:66 final size:66
Alignment explanation
Indices: 84830084--84830215 Score: 228
Period size: 66 Copynumber: 2.0 Consensus size: 66
84830074 ATTCATATAT
* *
84830084 CATTCATAACACATTTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
84830149 A
66 A
* *
84830150 CATTCATAACACATCTAGTTAGGAGCATTTGATTCATTTCGATCATAGCATCGTAATCATTTGAC
1 CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
84830215 A
66 A
84830216 TAAGCATAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (66 bp):
CATTCATAACACATCTAATTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATCATTTGAC
A
Found at i:84830426 original size:45 final size:42
Alignment explanation
Indices: 84830323--84830430 Score: 126
Period size: 43 Copynumber: 2.5 Consensus size: 42
84830313 GTGATGAGCT
*
84830323 TTAACCTCCTAAGAAGTAGGGTAACAAGCCGAATTTACAGACC
1 TTAACC-CCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
* * * *
84830366 TTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTCAGATC
1 TT-AACCCCTAAGCAGTAGGGTAACAAGCCG-A-ATTTACAGACC
84830411 TTAACCCCTTAAGCAGTAGG
1 TTAACCCC-TAAGCAGTAGG
84830431 AAAACAGATC
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
43 23 0.41
44 11 0.20
45 22 0.39
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.23
Consensus pattern (42 bp):
TTAACCCCTAAGCAGTAGGGTAACAAGCCGAATTTACAGACC
Found at i:84830481 original size:44 final size:42
Alignment explanation
Indices: 84830409--84830568 Score: 119
Period size: 44 Copynumber: 3.7 Consensus size: 42
84830399 GATTTTCAGA
**
84830409 TCTT-AACCCCTTAAGCAGTAGGAAAACAGATCGAGGACGAAGG
1 TCTTAAACCCC-TAAGCAGTAGGGGAACAGATCGA-GACGAAGG
* * * * *
84830452 GCTTTAAACCCCTAAGCAGTAGGGGAACAGGTTGA-ACTTACAGA
1 TC-TTAAACCCCTAAGCAGTAGGGGAACAGATCGAGAC-GA-AGG
* * *
84830496 TCTT-AACACCCTAAGTAGTAGGGGAACAGATCGAAGATGATGG
1 TCTTAAAC-CCCTAAGCAGTAGGGGAACAGATCG-AGACGAAGG
* *
84830539 TCCTTAACCCCCTAAGCAGTAGGGTAACAG
1 T-CTTAAACCCCTAAGCAGTAGGGGAACAG
84830569 GCTAGAAATT
Statistics
Matches: 90, Mismatches: 18, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
42 5 0.06
43 28 0.31
44 48 0.53
45 9 0.10
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (42 bp):
TCTTAAACCCCTAAGCAGTAGGGGAACAGATCGAGACGAAGG
Found at i:84830529 original size:87 final size:89
Alignment explanation
Indices: 84830364--84830571 Score: 269
Period size: 87 Copynumber: 2.4 Consensus size: 89
84830354 AATTTACAGA
* *
84830364 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTTCAGATCTTAACCCCTTAAGCAGTA
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAACCCCTTAAGCAGTA
*
84830429 GGAAAACAGATCGAGGACGAAGGG
66 GGAAAACAGATCGAAGACGAAGGG
* * * *
84830453 CTTTAAACCCCTAAGCAGTAGGGGAACAGGTTG-A-ACTTACAGATCTTAACACCC-TAAGTAGT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAAC-CCCTTAAGCAGT
** * * *
84830515 AGGGGAACAGATCGAAGATGATGGT
65 AGGAAAACAGATCGAAGACGAAGGG
*
84830540 CCTTAACCCCCTAAGCAGTAGGGTAACAGGCT
1 CCTTAAACCCCTAAGCAGTAGGGTAACAGGCT
84830572 AGAAATTACA
Statistics
Matches: 102, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
87 68 0.67
88 4 0.04
89 30 0.29
ACGTcount: A:0.34, C:0.22, G:0.25, T:0.20
Consensus pattern (89 bp):
CCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGACTTACAGATCTTAACCCCTTAAGCAGTA
GGAAAACAGATCGAAGACGAAGGG
Found at i:84830533 original size:132 final size:132
Alignment explanation
Indices: 84830268--84830524 Score: 331
Period size: 132 Copynumber: 1.9 Consensus size: 132
84830258 AGATCGGTGA
* *
84830268 ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGTGATGAGCTTTAACCTCCT
1 ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCT
* * *
84830333 AAGAAGTAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGA
66 AAGAAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGA
84830398 AG
131 AG
* * * *
84830400 ATTTTCAGATCTTAACCCCTTAAGCAGTAGGAAAACAGATCG-AGGACGAAGGGCTTTAAACC-C
1 ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGG-CGAAGAGCTTT-AACCTC
* * ** * *
84830463 CTAAGCAGTAGGGGAACAGGTTGAACTTACAGATCTT-AACACCCTAAGTAGTAGGGGAACAG
64 CTAAGAAGTAGGGGAACAAGCCGAACTTACAGACCTTAAAC-CCCTAAGCAGTAGGGGAACAG
84830525 ATCGAAGATG
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
131 6 0.06
132 97 0.91
133 4 0.04
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (132 bp):
ATTTACAGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCT
AAGAAGTAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGA
AG
Found at i:84830551 original size:132 final size:131
Alignment explanation
Indices: 84830274--84830561 Score: 325
Period size: 132 Copynumber: 2.2 Consensus size: 131
84830264 GTGAATTTAC
* * *
84830274 AGATCTTAACCCCCTAAACAGTAGGAAAACAGATCGAAGGTGATGAGCTTTAACCTCCTAAGAAG
1 AGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCTAAGAAG
* * * **
84830339 TAGGGTAACAAGCCGAATTTACAGACCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTT
66 TAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGATGA
84830404 T
131 T
* *
84830405 CAGATCTTAACCCCTTAAGCAGTAGGAAAACAGATCG-AGGACGAAGGGCTTTAAACC-CCTAAG
1 -AGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGG-CGAAGAGCTTT-AACCTCCTAAG
* * ** * * *
84830468 CAGTAGGGGAACAGGTTGAACTTACAGATCTT-AACACCCTAAGTAGTAGGGGAACA-GATCGAA
63 AAGTAGGGGAACAAGCCGAACTTACAGACCTTAAAC-CCCTAAGCAGTAGGGGAACAGGCT-GAA
84830531 GATGAT
126 GATGAT
*
84830537 -GGTCCTTAACCCCCTAAGCAGTAGG
1 AGAT-CTTAACCCCCTAAGCAGTAGG
84830562 GTAACAGGCT
Statistics
Matches: 132, Mismatches: 19, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
130 2 0.02
131 28 0.21
132 98 0.74
133 4 0.03
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.20
Consensus pattern (131 bp):
AGATCTTAACCCCCTAAGCAGTAGGAAAACAGATCGAAGGCGAAGAGCTTTAACCTCCTAAGAAG
TAGGGGAACAAGCCGAACTTACAGACCTTAAACCCCTAAGCAGTAGGGGAACAGGCTGAAGATGA
T
Found at i:84835297 original size:43 final size:44
Alignment explanation
Indices: 84835226--84835360 Score: 175
Period size: 43 Copynumber: 3.1 Consensus size: 44
84835216 TATCGAAATG
* *
84835226 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
84835270 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
84835313 T-ATTATTCGAGCCTATGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
84835358 TGA
1 TGA
84835361 AATGTTATGT
Statistics
Matches: 77, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.47
44 8 0.10
45 31 0.40
46 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:84835350 original size:45 final size:43
Alignment explanation
Indices: 84835243--84835360 Score: 157
Period size: 45 Copynumber: 2.7 Consensus size: 43
84835233 CGGGCTTCGG
* *
84835243 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTATGA
* * *
84835286 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTATGA
84835331 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
84835361 AATGTTATGT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
42 1 0.02
43 27 0.43
44 3 0.05
45 31 0.49
46 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTATGA
Found at i:84835691 original size:38 final size:38
Alignment explanation
Indices: 84835657--84835827 Score: 220
Period size: 38 Copynumber: 4.5 Consensus size: 38
84835647 GCAGGCTATA
*
84835657 TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
84835695 TGCTGGTAA-TATATCCGTGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
84835733 TGCTGGTAA-TATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * * *
84835771 TGCTGGTATTATATTCGGGTTAAATCTCGCAGGCCTAG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
84835809 TGCTGGTATTATATTCGGG
1 TGCTGGAATTATATCCGGG
84835828 CCTTTGAGCC
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
37 1 0.01
38 118 0.98
39 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:84835870 original size:45 final size:45
Alignment explanation
Indices: 84835820--84835949 Score: 190
Period size: 45 Copynumber: 2.9 Consensus size: 45
84835810 GCTGGTATTA
* *
84835820 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
* *
84835865 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGATGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
* *
84835910 TATTCAGG-CTTTCGAGCCTAGCTGGCTATAATGCCGATGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGATGA
84835950 AATGATAATC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
44 4 0.05
45 73 0.95
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
Found at i:84836292 original size:43 final size:44
Alignment explanation
Indices: 84836237--84836371 Score: 166
Period size: 43 Copynumber: 3.1 Consensus size: 44
84836227 TATCGAAATG
* * *
84836237 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCTGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
84836281 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* *
84836324 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATACCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
84836369 TGA
1 TGA
84836372 AATGTTATGT
Statistics
Matches: 76, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
42 1 0.01
43 35 0.46
44 8 0.11
45 31 0.41
46 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:84836353 original size:45 final size:43
Alignment explanation
Indices: 84836254--84836371 Score: 148
Period size: 45 Copynumber: 2.7 Consensus size: 43
84836244 CGGGCTTCGG
* *
84836254 GCCTAGCAGGCTATAATGCCTGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
* * *
84836297 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA
*
84836342 GCCTAGCAGGCTATAATACCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
84836372 AATGTTATGT
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
42 1 0.02
43 26 0.42
44 3 0.05
45 31 0.50
46 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
Found at i:84836702 original size:38 final size:38
Alignment explanation
Indices: 84836668--84836838 Score: 204
Period size: 38 Copynumber: 4.5 Consensus size: 38
84836658 GCAGGCTATA
*
84836668 TGCTGGAATTATATCCGGGTTAAATCCCGTAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
84836706 TGCTGGTAA-TATATCCGTGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
84836744 TGCTGGTAA-TATATCTGGGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * * *
84836782 TGCTGGTATTATA-CTTGGGTTAAATCTCGCAGGCCTAG
1 TGCTGGAATTATATC-CGGGTTAAATCCCGCAGGCTTCG
* *
84836820 TGCTGGTATTATATTCGGG
1 TGCTGGAATTATATCCGGG
84836839 CCTTTGAGCC
Statistics
Matches: 119, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
37 2 0.02
38 115 0.97
39 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:84836881 original size:45 final size:45
Alignment explanation
Indices: 84836831--84836960 Score: 199
Period size: 45 Copynumber: 2.9 Consensus size: 45
84836821 GCTGGTATTA
* *
84836831 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
* *
84836876 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGATGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
*
84836921 TATTCAGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGA
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGATGA
84836961 AATGATAATC
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
44 4 0.05
45 74 0.95
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGATGAGACAC
Found at i:84837252 original size:33 final size:33
Alignment explanation
Indices: 84837207--84837273 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
84837197 GTGTGAAAGT
*
84837207 ATGTGAACGTATTTGAGTTAATTATGTTATATG
1 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
84837240 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
1 ATGTGAAAGTATTTGAGTTAATTATGTTATATG
84837273 A
1 A
84837274 ATTTAGATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.01, G:0.21, T:0.45
Consensus pattern (33 bp):
ATGTGAAAGTATTTGAGTTAATTATGTTATATG
Found at i:84838578 original size:21 final size:21
Alignment explanation
Indices: 84838523--84838578 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
84838513 CATATATATA
*
84838523 TATATATCATGTATATACATTT
1 TATATAT-ATATATATACATTT
* **
84838545 TA-ATATCTCATATATATTTTT
1 TATATATAT-ATATATACATTT
84838566 TATATATATATAT
1 TATATATATATAT
84838579 GTATATTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
20 1 0.04
21 19 0.70
22 7 0.26
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.54
Consensus pattern (21 bp):
TATATATATATATATACATTT
Found at i:84838587 original size:19 final size:18
Alignment explanation
Indices: 84838514--84838593 Score: 56
Period size: 19 Copynumber: 4.4 Consensus size: 18
84838504 TATATATTTC
*
84838514 ATATATATATA-TATATC
1 ATATATATATATTATATT
* * * *
84838531 ATGTATATACATTTTAAT
1 ATATATATATATTATATT
* *
84838549 ATCTCATATATATT-TTTT
1 ATAT-ATATATATTATATT
84838567 ATATATATATATGTATATT
1 ATATATATATAT-TATATT
*
84838586 ATGTATAT
1 ATATATAT
84838594 TTTCTTTTTT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
17 17 0.36
18 12 0.26
19 18 0.38
ACGTcount: A:0.39, C:0.05, G:0.04, T:0.53
Consensus pattern (18 bp):
ATATATATATATTATATT
Found at i:84841760 original size:39 final size:39
Alignment explanation
Indices: 84841716--84841792 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
84841706 CAATTTAGGG
84841716 TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCACT
1 TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCACT
* *
84841755 TAAGGATTTCTTTACAATGGGAGGTAATATAATGTCAC
1 TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCAC
84841793 CATCACTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.32
Consensus pattern (39 bp):
TAAGGATTTCTTTACAATGGGAGGCAACATAATGTCACT
Found at i:84847776 original size:158 final size:158
Alignment explanation
Indices: 84847488--84847804 Score: 580
Period size: 158 Copynumber: 2.0 Consensus size: 158
84847478 TCATGTATGA
* *
84847488 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATATCGTGTATCCGTATATCATATATA
1 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCATGTATCCGTATATCATATATA
*
84847553 AACTATTTCCATGTAAATACCTGTACTAGTTCGTATTGAACTTGTATAATCCCATAATAACACTA
66 AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAATAACACTA
84847618 TGCTCGTTGAACCACTTAGAATATCGTT
131 TGCTCGTTGAACCACTTAGAATATCGTT
*
84847646 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCATTTATCCGTATATCATATATA
1 ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCATGTATCCGTATATCATATATA
* *
84847711 AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGGACTTGTATAATCCCGTAATAACACTA
66 AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAATAACACTA
84847776 TGCTCGTTGAACCACTTAGAATATCGTT
131 TGCTCGTTGAACCACTTAGAATATCGTT
84847804 A
1 A
84847805 GATACGTGGA
Statistics
Matches: 153, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
158 153 1.00
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (158 bp):
ATTCAACAATTAATAAATTTCGTGTACATGTAACATCTATACCATGTATCCGTATATCATATATA
AACTATTTCCATGTAAATACCTGTACTAGTTCATATTGAACTTGTATAATCCCATAATAACACTA
TGCTCGTTGAACCACTTAGAATATCGTT
Found at i:84857122 original size:25 final size:26
Alignment explanation
Indices: 84857081--84857142 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 26
84857071 AGTGATAAAT
*
84857081 GGTAAGCTCCT-TCGAGCTGAATAAC
1 GGTAAGCTCATATCGAGCTGAATAAC
* *
84857106 GGTAAGCTCATAT-GAGCTGAGTATC
1 GGTAAGCTCATATCGAGCTGAATAAC
*
84857131 GATAAGCTCATA
1 GGTAAGCTCATA
84857143 AGAGGTGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 31 0.97
26 1 0.03
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
GGTAAGCTCATATCGAGCTGAATAAC
Found at i:84863594 original size:164 final size:165
Alignment explanation
Indices: 84863410--84863739 Score: 644
Period size: 164 Copynumber: 2.0 Consensus size: 165
84863400 GAAAAATTTG
84863410 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
1 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
84863475 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCAGACATAAATTATTTATTGCTCCCA
66 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCAGACATAAATTATTTATTGCTCCCA
*
84863540 ACCACCGTTTGTGGAACTTCTCCACGTAAGTGCCC
131 ACCACCATTTGTGGAACTTCTCCACGTAAGTGCCC
84863575 TGCACAAA-TTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
1 TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
84863639 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCAGACATAAATTATTTATTGCTCCCA
66 TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCAGACATAAATTATTTATTGCTCCCA
84863704 ACCACCATTTGTGGAACTTCTCCACGTAAGTGCCC
131 ACCACCATTTGTGGAACTTCTCCACGTAAGTGCCC
84863739 T
1 T
84863740 AATATCCATG
Statistics
Matches: 164, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
164 156 0.95
165 8 0.05
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (165 bp):
TGCACAAATTTTTAACAAATATATATAAATAAAAATATGAGTTTCTTATCCTCTAGTTAATTCTA
TTAAGTTCACCATGAATTCCTTTGGATAAGGAGTTCAGCCAGACATAAATTATTTATTGCTCCCA
ACCACCATTTGTGGAACTTCTCCACGTAAGTGCCC
Found at i:84864434 original size:21 final size:21
Alignment explanation
Indices: 84864408--84864574 Score: 226
Period size: 21 Copynumber: 7.7 Consensus size: 21
84864398 CGGAGGTAAA
*
84864408 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
*
84864429 GGAGGGTATGGAGGTGGGCAC
1 GGAGGGTATGGTGGTGGGCAC
*
84864450 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
*
84864471 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
*
84864492 GGAGGGTATGGTGGTGGACAC
1 GGAGGGTATGGTGGTGGGCAC
84864513 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
84864537 GGAGGGTATGGTGGTGGTGGCCAC
1 GGAGGGTATGGTGGT-G-GG-CAC
*
84864561 GGAGGATATGGTGG
1 GGAGGGTATGGTGG
84864575 CGGTGGACAT
Statistics
Matches: 139, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
21 97 0.70
22 1 0.01
23 1 0.01
24 40 0.29
ACGTcount: A:0.17, C:0.10, G:0.54, T:0.19
Consensus pattern (21 bp):
GGAGGGTATGGTGGTGGGCAC
Found at i:84871471 original size:16 final size:17
Alignment explanation
Indices: 84871418--84871495 Score: 67
Period size: 16 Copynumber: 4.8 Consensus size: 17
84871408 GATTGATTTA
* *
84871418 TATTTT-ATATATAAAT
1 TATTTTAATATTTAATT
*
84871434 TATTTAAATA-TT-ATT
1 TATTTTAATATTTAATT
*
84871449 TAATTTAATATTTAATT
1 TATTTTAATATTTAATT
*
84871466 T-TTTTAATATTTTATT
1 TATTTTAATATTTAATT
84871482 TATTATTAAT-TTTA
1 TATT-TTAATATTTA
84871496 CAAAAAATTA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
15 10 0.20
16 22 0.45
17 12 0.24
18 5 0.10
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TATTTTAATATTTAATT
Found at i:84872657 original size:21 final size:21
Alignment explanation
Indices: 84872631--84872686 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
84872621 AATAGCGGTG
* *
84872631 GCGGTGAGATTAGTTATTGTA
1 GCGGTGAGATTAGATACTGTA
*
84872652 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACTGTA
84872673 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
84872687 AACAACGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.07, G:0.38, T:0.30
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:84872920 original size:15 final size:15
Alignment explanation
Indices: 84872900--84872955 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
84872890 ATTTACTAAA
*
84872900 ATTATAATATATAAT
1 ATTATAAAATATAAT
84872915 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
84872928 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
84872941 ATTATTAAATATAAT
1 ATTATAAAATATAAT
84872956 TTAACAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:84872950 original size:26 final size:25
Alignment explanation
Indices: 84872910--84872972 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
84872900 ATTATAATAT
84872910 ATAATATTATAAAATATAATTTAAA
1 ATAATATTATAAAATATAATTTAAA
*
84872935 ATAATTATTATTAAATATAATTTAACA
1 ATAA-TATTATAAAATATAATTTAA-A
*
84872962 AAAATA-TATAA
1 ATAATATTATAA
84872973 TTTAATAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 8 0.24
26 21 0.64
27 4 0.12
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (25 bp):
ATAATATTATAAAATATAATTTAAA
Found at i:84872968 original size:59 final size:59
Alignment explanation
Indices: 84872905--84873103 Score: 201
Period size: 59 Copynumber: 3.3 Consensus size: 59
84872895 CTAAAATTAT
84872905 AATATATAATATT-ATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
1 AATATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
* * * * * * ** *
84872964 AATATATAATTTAATAAAATTCTTAGTATT-AAAT-ATTCTTATATGAATTTACTAAAATC-AT
1 AATATATAATTTAATAAAA-T-ATAAT-TTAAAATAATTATTAT-TAAATATAATTTAA-CAAA
* *
84873025 AATATATAATACT-ATAAAATATAATTTAAAATAATTATGATTAAATATAATTTAACAAA
1 AATATATAAT-TTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
84873084 AATATATAATTTAATAAAAT
1 AATATATAATTTAATAAAAT
84873104 TCTTAGTATT
Statistics
Matches: 108, Mismatches: 21, Indels: 22
0.72 0.14 0.15
Matches are distributed among these distances:
58 6 0.06
59 50 0.46
60 15 0.14
61 33 0.31
62 4 0.04
ACGTcount: A:0.54, C:0.04, G:0.02, T:0.41
Consensus pattern (59 bp):
AATATATAATTTAATAAAATATAATTTAAAATAATTATTATTAAATATAATTTAACAAA
Found at i:84873016 original size:120 final size:120
Alignment explanation
Indices: 84872883--84873122 Score: 453
Period size: 120 Copynumber: 2.0 Consensus size: 120
84872873 TTTAATAGAA
* * *
84872883 TATATGAATTTACTAAAATTATAATATATAATATTATAAAATATAATTTAAAATAATTATTATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
84872948 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
84873003 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
1 TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
84873068 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
66 AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
84873123 AATGATTATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (120 bp):
TATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAATTTAAAATAATTATGATTA
AATATAATTTAACAAAAATATATAATTTAATAAAATTCTTAGTATTAAATATTCT
Found at i:84880483 original size:20 final size:20
Alignment explanation
Indices: 84880458--84880503 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
84880448 ATACGCGGCA
84880458 CATTTATGCTAGCCCGAATT
1 CATTTATGCTAGCCCGAATT
84880478 CATTTATGCTAGCCCGAATT
1 CATTTATGCTAGCCCGAATT
*
84880498 CCTTTA
1 CATTTA
84880504 AGCATATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (20 bp):
CATTTATGCTAGCCCGAATT
Found at i:84882540 original size:18 final size:18
Alignment explanation
Indices: 84882515--84882607 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
84882505 ACCGTTTACG
*
84882515 GTACTATTTACGTATACA
1 GTACTATTCACGTATACA
* *
84882533 GCACTATTTACGTATACA
1 GTACTATTCACGTATACA
*
84882551 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
84882569 GTACTGTTCACGTATACG
1 GTACTATTCACGTATACA
*
84882587 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
84882605 GTA
1 GTA
84882608 GTTGGGATTG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 69 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.34
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:84889997 original size:31 final size:29
Alignment explanation
Indices: 84889940--84889997 Score: 71
Period size: 31 Copynumber: 1.9 Consensus size: 29
84889930 GTAAATTTAT
* * *
84889940 AATTTAGTCTCTATATTTTTGTTTTCATG
1 AATTTAGTCTCTACATTTTAGATTTCATG
84889969 AATTTAGTCCCTCTACATTTTAGATTTCA
1 AATTTAGT--CTCTACATTTTAGATTTCA
84889998 AAATTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 8 0.33
31 16 0.67
ACGTcount: A:0.24, C:0.16, G:0.09, T:0.52
Consensus pattern (29 bp):
AATTTAGTCTCTACATTTTAGATTTCATG
Found at i:84891035 original size:7 final size:8
Alignment explanation
Indices: 84891023--84891056 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
84891013 ATAATAAAAT
84891023 ATAT-AAA
1 ATATCAAA
84891030 ATAT-AAA
1 ATATCAAA
84891037 ATATCAAA
1 ATATCAAA
84891045 ATATCAAA
1 ATATCAAA
84891053 ATAT
1 ATAT
84891057 TAGAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (8 bp):
ATATCAAA
Found at i:84891039 original size:24 final size:24
Alignment explanation
Indices: 84891012--84891067 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
84891002 TAATGATGTG
*
84891012 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
*
84891036 AAT-ATCAAAATATCAAAATATTAG
1 AATAAT-AAAATATCAAAATATTAA
84891060 AATAATAA
1 AATAATAA
84891068 TAATTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 8 0.30
24 17 0.63
25 2 0.07
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:84891063 original size:16 final size:15
Alignment explanation
Indices: 84891016--84891063 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
84891006 GATGTGAATA
84891016 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
84891032 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
84891047 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
84891063 A
1 A
84891064 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:84891280 original size:22 final size:24
Alignment explanation
Indices: 84891217--84891281 Score: 80
Period size: 25 Copynumber: 2.8 Consensus size: 24
84891207 CGTGATAATA
*
84891217 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
84891242 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
*
84891265 TT-AAGATATATACATAA
1 TTAAAAATATATACATAA
84891282 GATAACATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 13 0.36
23 3 0.08
25 20 0.56
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:84891328 original size:23 final size:24
Alignment explanation
Indices: 84891300--84891429 Score: 78
Period size: 25 Copynumber: 5.5 Consensus size: 24
84891290 GTAAAAAAAT
84891300 ATATATAAATAATATAATATTAAAG
1 ATATAT-AATAATATAATATTAAAG
* * * *
84891325 ATATATACATAAAATAGTATAAAAT
1 ATATATA-ATAATATAATATTAAAG
*
84891350 ATATATATGTAATATAGA-ATTTAAA-
1 ATATATA-ATAATATA-ATA-TTAAAG
** *
84891375 ATATA-CCTAATAT-AT-TAAAAG
1 ATATATAATAATATAATATTAAAG
84891396 A-ATAT-ATAATATAATATT-AAG
1 ATATATAATAATATAATATTAAAG
*
84891417 AAATATAATAATA
1 ATATATAATAATA
84891430 ACAAAAAAGG
Statistics
Matches: 81, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
20 13 0.16
21 8 0.10
22 5 0.06
23 12 0.15
24 1 0.01
25 38 0.47
26 4 0.05
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (24 bp):
ATATATAATAATATAATATTAAAG
Found at i:84891363 original size:50 final size:44
Alignment explanation
Indices: 84891295--84891427 Score: 112
Period size: 50 Copynumber: 2.9 Consensus size: 44
84891285 AACATGTAAA
84891295 AAAATATATATAAATAATATAATATTAAAGATATATACATAAAATAGTAT
1 AAAATATATAT--ATAATATAATATT-AAGA-ATATACATAAAATA-T-T
* *
84891345 AAAATATATATATGTAATATAGA-ATTTAA-AATATACCTAATATATT
1 AAAATATATATA--TAATATA-ATA-TTAAGAATATACATAAAATATT
*
84891391 AAAAGA-ATATATAATATAATATTAAGAAATATA-ATAA
1 AAAATATATATATAATATAATATTAAG-AATATACATAA
84891428 TAACAAAAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 21
0.74 0.04 0.22
Matches are distributed among these distances:
42 5 0.07
43 11 0.15
44 6 0.08
45 5 0.07
46 6 0.08
47 1 0.01
48 13 0.18
49 1 0.01
50 21 0.29
51 3 0.04
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.35
Consensus pattern (44 bp):
AAAATATATATATAATATAATATTAAGAATATACATAAAATATT
Found at i:84891407 original size:20 final size:20
Alignment explanation
Indices: 84891382--84891426 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
84891372 AAAATATACC
*
84891382 TAATATATTA-AAAGAATATA
1 TAATATAATATAAAGAA-ATA
*
84891402 TAATATAATATTAAGAAATA
1 TAATATAATATAAAGAAATA
84891422 TAATA
1 TAATA
84891427 ATAACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (20 bp):
TAATATAATATAAAGAAATA
Found at i:84891962 original size:30 final size:30
Alignment explanation
Indices: 84891927--84892062 Score: 176
Period size: 30 Copynumber: 4.7 Consensus size: 30
84891917 GTACAAGTGA
*
84891927 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
*
84891957 TGGTGGAAAA--AG-AG-T-G-GGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
84891981 TGGTGGAAAAAGAGTGGCTAGTGGAGTTAG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
* *
84892011 TGGTGGAAAATGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
84892041 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
84892063 TGAGAAAAGT
Statistics
Matches: 91, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
24 18 0.20
25 1 0.01
26 3 0.03
27 2 0.02
28 2 0.02
29 1 0.01
30 64 0.70
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (30 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTGG
Found at i:84891978 original size:24 final size:24
Alignment explanation
Indices: 84891949--84891997 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
84891939 TGTGGCTAGT
84891949 GGAGTTGGTGGTGGAAAAAGAGTG
1 GGAGTTGGTGGTGGAAAAAGAGTG
84891973 GGAGTTGGTGGTGGAAAAAGAGTG
1 GGAGTTGGTGGTGGAAAAAGAGTG
84891997 G
1 G
84891998 CTAGTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (24 bp):
GGAGTTGGTGGTGGAAAAAGAGTG
Found at i:84892006 original size:54 final size:59
Alignment explanation
Indices: 84891927--84892062 Score: 183
Period size: 54 Copynumber: 2.4 Consensus size: 59
84891917 GTACAAGTGA
* *
84891927 TGGTGGAAAAGGTGTGGCTAGTGGAGTTGGTGGTGGAAAA-AG-AG-T-G-GGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTAGTGGTGGAAAAGAGTAGCTAGTGGAGTTGG
* * *
84891981 TGGTGGAAAAAGAGTGGCTAGTGGAGTTAGTGGTGGAAAATGTGTGGCTAGTGGAGTTGG
1 TGGTGGAAAAGGAGTGGCTAGTGGAGTTAGTGGTGGAAAA-GAGTAGCTAGTGGAGTTGG
84892041 TGGTGGAAAAGGAGTGGCTAGT
1 TGGTGGAAAAGGAGTGGCTAGT
84892063 TGAGAAAAGT
Statistics
Matches: 70, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
54 37 0.53
56 1 0.01
57 1 0.01
58 1 0.01
59 1 0.01
60 29 0.41
ACGTcount: A:0.25, C:0.03, G:0.47, T:0.25
Consensus pattern (59 bp):
TGGTGGAAAAGGAGTGGCTAGTGGAGTTAGTGGTGGAAAAGAGTAGCTAGTGGAGTTGG
Found at i:84892831 original size:14 final size:14
Alignment explanation
Indices: 84892812--84892861 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
84892802 GAGTTGATTT
* *
84892812 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
84892826 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
84892841 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
84892855 TT-AAAAA
1 TTGAAAAA
84892862 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:84893000 original size:75 final size:75
Alignment explanation
Indices: 84892884--84893084 Score: 316
Period size: 75 Copynumber: 2.7 Consensus size: 75
84892874 TGAGCCGAGA
* *
84892884 CTCAACTCACCTCTCGCAATATGAGTT-A-ATTTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
84892947 TGTCCCAAGG
66 TGTCCCAAGG
* * * *
84892957 CTCAACTCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAATACCTCAGCG
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
*
84893022 TGTCCTAAGG
66 TGTCCCAAGG
*
84893032 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACAAACAGAAATTGAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAA
84893085 GAACAGAAAT
Statistics
Matches: 114, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
73 25 0.22
74 1 0.01
75 88 0.77
ACGTcount: A:0.34, C:0.22, G:0.13, T:0.31
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
TGTCCCAAGG
Found at i:84893091 original size:14 final size:14
Alignment explanation
Indices: 84893072--84893098 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
84893062 TTTTTTTACA
84893072 AACAGAAATTGAAG
1 AACAGAAATTGAAG
84893086 AACAGAAATTGAA
1 AACAGAAATTGAA
84893099 AAGACCTCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.07, G:0.19, T:0.15
Consensus pattern (14 bp):
AACAGAAATTGAAG
Found at i:84893164 original size:89 final size:89
Alignment explanation
Indices: 84892991--84893174 Score: 248
Period size: 89 Copynumber: 2.1 Consensus size: 89
84892981 GTTGATTTTT
* * *
84892991 TTGAAAAACAGAAATTTAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGA
** *
84893056 GTTGATTTTTTTTACAAACAGAAA
66 GTTGATAATTTTGACAAACAGAAA
* *
84893080 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAAGACCTCAGC--GTG-ACCTAAGGCTCAACTCACCTCTCGCAATA
84893144 TGAGTT-A-AATTTTGACAAACAGAAA
63 TGAGTTGATAATTTTGACAAACAGAAA
84893169 TTGAAA
1 TTGAAA
84893175 TTACCTCAGC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
89 47 0.57
90 1 0.01
91 33 0.40
92 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (89 bp):
TTGAAAAACAGAAATTGAAAAGACCTCAGCGTGACCTAAGGCTCAACTCACCTCTCGCAATATGA
GTTGATAATTTTGACAAACAGAAA
Found at i:84893206 original size:73 final size:73
Alignment explanation
Indices: 84893080--84893296 Score: 308
Period size: 73 Copynumber: 2.9 Consensus size: 73
84893070 CAAACAGAAA
* * **
84893080 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
84893145 GAGTTAAATT
64 GAGTTAAATT
* *
84893155 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
84893220 GTTGATTT
66 GTTAAATT
* * *
84893228 TTGAAAAACAGAAATTTAAAAATACCTTAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
84893293 AGTT
65 AGTT
84893297 GATTTTTTTT
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
73 52 0.41
74 50 0.39
75 26 0.20
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (73 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAAATT
Found at i:84893450 original size:73 final size:73
Alignment explanation
Indices: 84893325--84894074 Score: 636
Period size: 73 Copynumber: 9.9 Consensus size: 73
84893315 GAAGTTGAAG
** ** *
84893325 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
84893390 ATTTTTGACA
64 ATTTTTGACA
84893400 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
84893465 TTTTGAAA
66 TTTTGACA
* * * *
84893473 AAAAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
84893538 TTTTTTTTACG
65 --TTTTTGACA
* *** *** * * * * * *
84893549 AACAAAAATTGAAGA--ACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTTAACTCAC-C
1 AACAGAAATTGAA-ATTAC-CTCA--G-CGTGTCC-C-G-A---G-GCTCA-ACTCACCTCTCGC
* * ** ****
84893611 --TCTCGCAATATGAGTTAATTTTT
53 AATAT-G-AGT-TGA-TTTTTGACA
*
84893634 GACA-AACA--GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
1 AACAGAA-ATTG-AA-----ATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
* *
84893696 AGTCGATTTTTGAAA
59 AGTTGATTTTTGACA
* * * *
84893711 AACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAATTCACCTCTCGCAATATGAGTTGA
1 AACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
84893776 TTTTTTTTTTACG
65 ----TTTTTGACA
** **
84893789 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
84893854 ATTTTTGACA
64 ATTTTTGACA
** *
84893864 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGGGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
84893929 TTTTGACA
66 TTTTGACA
** *
84893937 AACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGGAATATGAGTTGA-
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
84894001 TTTTGACA
66 TTTTGACA
*
84894009 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
84894074 T
66 T
84894075 GAAATACCTC
Statistics
Matches: 546, Mismatches: 88, Indels: 84
0.76 0.12 0.12
Matches are distributed among these distances:
72 70 0.13
73 159 0.29
74 102 0.19
75 56 0.10
76 13 0.02
77 22 0.04
78 28 0.05
79 45 0.08
80 3 0.01
81 3 0.01
83 4 0.01
84 7 0.01
85 16 0.03
86 13 0.02
87 1 0.00
88 1 0.00
89 1 0.00
90 2 0.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (73 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACA
Found at i:84893706 original size:238 final size:238
Alignment explanation
Indices: 84892833--84894004 Score: 1960
Period size: 239 Copynumber: 5.0 Consensus size: 238
84892823 AAATTGAAAA
* *
84892833 AACAGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTC
1 AACAGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTC
*
84892897 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCAAGGCTCAA
65 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
* *
84892962 CTCACCTTTCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTT-AAAATACCTCAGCGTGTC
130 CTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTC
* *
84893026 CTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACA
193 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
*
84893072 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAACCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
*
84893137 CGCAATATGAGTTAAATTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
84893202 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTTAGCGTGTCCTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
84893267 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACG
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTACG
*
84893311 AACAGAAGTTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
84893376 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
84893441 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAAAAGAAATTTAAAAATACCTCAGCGTGTCCTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
84893506 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
* * *
84893549 AACAAAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCTGAGGCTTAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
84893614 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
84893679 TCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
*
84893744 AGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTT---
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
*
84893784 --------TT-ACGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
* **
84893840 CGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAAC
66 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* * * * *
84893905 TCACCTCTCGCAATATGGGTTGATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCTTG
131 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
*
84893969 AGGCTCAACTCACCTCTCGGAATATGAGTTGATTTT
196 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
84894005 GACAAACAGA
Statistics
Matches: 894, Mismatches: 36, Indels: 20
0.94 0.04 0.02
Matches are distributed among these distances:
225 55 0.06
226 150 0.17
227 2 0.00
237 20 0.02
238 290 0.32
239 375 0.42
240 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (238 bp):
AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTACG
Found at i:84894102 original size:56 final size:56
Alignment explanation
Indices: 84894016--84894124 Score: 159
Period size: 56 Copynumber: 1.9 Consensus size: 56
84894006 ACAAACAGAA
* *
84894016 ATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 ATTGAAATTACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
84894072 ATTGAAA-TACCTCAGCTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAG
1 ATTGAAATTACCTCAGC-GTG-GCCTAAGGCTCAACTCACCTCTCGCAATATGAG
84894125 CTACTTTTGA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
55 9 0.19
56 37 0.77
57 2 0.04
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (56 bp):
ATTGAAATTACCTCAGCGTGGCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTG
Found at i:84894172 original size:128 final size:128
Alignment explanation
Indices: 84893969--84894202 Score: 371
Period size: 128 Copynumber: 1.8 Consensus size: 128
84893959 GCGTGTCTTG
* * * **
84893969 AGGCTCAACTCACCTCTCGGAATATGAGTTGATTTTGACAAACAGAAATTGAAATTACCTCAGCG
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGACAAACAGAAATTAAAACCACCTCAGCG
84894034 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAATACCTCAGCTGTGAGCCA
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAATACCTCAGCTGTGAGCCA
* ** *
84894097 AGGCTCAACTCACCTCTTGCAATATGAGCT-ACTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTGACAAACAGAAATTAAAACCACCTCAGC
84894161 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
65 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
84894203 TTTTTTGAAA
Statistics
Matches: 96, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
127 1 0.01
128 95 0.99
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (128 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGACAAACAGAAATTAAAACCACCTCAGCG
TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTGAAATACCTCAGCTGTGAGCCA
Found at i:84899170 original size:21 final size:22
Alignment explanation
Indices: 84899144--84899186 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
84899134 AATTGTTTTG
*
84899144 AATTAATTGAA-TTAAATTAAA
1 AATTAATTGAACTAAAATTAAA
*
84899165 AATTAATTTAACTAAAATTAAA
1 AATTAATTGAACTAAAATTAAA
84899187 TTAATTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTAATTGAACTAAAATTAAA
Found at i:84900225 original size:27 final size:27
Alignment explanation
Indices: 84900195--84900274 Score: 151
Period size: 27 Copynumber: 3.0 Consensus size: 27
84900185 TCGAGGTTAT
84900195 GGAGGATACGGAGGGCGCGGTGGGTAC
1 GGAGGATACGGAGGGCGCGGTGGGTAC
*
84900222 GGAGGATACGGAGGGCGTGGTGGGTAC
1 GGAGGATACGGAGGGCGCGGTGGGTAC
84900249 GGAGGATACGGAGGGCGCGGTGGGTA
1 GGAGGATACGGAGGGCGCGGTGGGTA
84900275 TGGTGGTGGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.19, C:0.12, G:0.56, T:0.12
Consensus pattern (27 bp):
GGAGGATACGGAGGGCGCGGTGGGTAC
Found at i:84901205 original size:20 final size:22
Alignment explanation
Indices: 84901164--84901206 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
84901154 ATTTAGTCAA
*
84901164 TTAATAAATATAATTTATTATT
1 TTAATAAATATAATTTAATATT
84901186 TTAATAAAT-T-ATTTAATATT
1 TTAATAAATATAATTTAATATT
84901206 T
1 T
84901207 CAATTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 9 0.45
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATAAATATAATTTAATATT
Found at i:84901230 original size:13 final size:14
Alignment explanation
Indices: 84901214--84901255 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
84901204 TTTCAATTTT
84901214 ATTTTAATAATA-A
1 ATTTTAATAATATA
*
84901227 ATTTTAAAAATAATA
1 ATTTTAATAAT-ATA
84901242 ATTTTAAATAATAT
1 ATTTT-AATAATAT
84901256 TATTCACATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
15 8 0.33
16 5 0.21
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTTTAATAATATA
Found at i:84901240 original size:16 final size:16
Alignment explanation
Indices: 84901218--84901254 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
84901208 AATTTTATTT
84901218 TAATAATAAATTTTAAA
1 TAATAAT-AATTTTAAA
84901235 -AATAATAATTTTAAA
1 TAATAATAATTTTAAA
84901250 TAATA
1 TAATA
84901255 TTATTCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
TAATAATAATTTTAAA
Found at i:84901307 original size:15 final size:15
Alignment explanation
Indices: 84901287--84901343 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
84901277 ATTCAATAGT
84901287 AATATTTTAATAATA
1 AATATTTTAATAATA
*
84901302 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
84901321 AATATATTAATAATA
1 AATATTTTAATAATA
*
84901336 AATGTTTT
1 AATATTTT
84901344 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:84902374 original size:22 final size:23
Alignment explanation
Indices: 84902330--84902377 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
84902320 ACCAGAATCC
84902330 TTTCCCTCTCCCTCCTCTCTCTT
1 TTTCCCTCTCCCTCCTCTCTCTT
* * *
84902353 TTTCTCTCTTCCT-CTCTTTCTT
1 TTTCCCTCTCCCTCCTCTCTCTT
84902375 TTT
1 TTT
84902378 TTTCTTCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTCCCTCTCCCTCCTCTCTCTT
Found at i:84902878 original size:23 final size:23
Alignment explanation
Indices: 84902832--84902900 Score: 63
Period size: 23 Copynumber: 3.0 Consensus size: 23
84902822 CTTTATTTTC
*
84902832 TTTTTATATATTATTACT-GT-TA
1 TTTTTATAT-TTATTACTAATATA
84902854 TTTTTATATTTATTACTAATATA
1 TTTTTATATTTATTACTAATATA
* * *
84902877 TTATTAT-TATAGTTACTACTATA
1 TTTTTATATTTA-TTACTAATATA
84902900 T
1 T
84902901 ATATATGTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 8 0.20
22 13 0.32
23 19 0.47
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (23 bp):
TTTTTATATTTATTACTAATATA
Found at i:84902886 original size:26 final size:27
Alignment explanation
Indices: 84902851--84902904 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
84902841 ATTATTACTG
* * *
84902851 TTATTTTTATATTTATTACTA-ATATA
1 TTATTATTATAGTTACTACTATATATA
84902877 TTATTATTATAGTTACTACTATATATA
1 TTATTATTATAGTTACTACTATATATA
84902904 T
1 T
84902905 ATGTTACGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (27 bp):
TTATTATTATAGTTACTACTATATATA
Found at i:84903068 original size:22 final size:23
Alignment explanation
Indices: 84903031--84903076 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
84903021 TACACATGCA
*
84903031 TTTTTCATATTAATA-TATATATG
1 TTTTTAATATTAATATTAT-TATG
84903054 TTTTTAATATT-ATATTATTATG
1 TTTTTAATATTAATATTATTATG
84903076 T
1 T
84903077 ATATGTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (23 bp):
TTTTTAATATTAATATTATTATG
Found at i:84903095 original size:30 final size:28
Alignment explanation
Indices: 84903037--84903093 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
84903027 TGCATTTTTC
84903037 ATATTAATATATATATGTTTTTAATATT
1 ATATTAATATATATATGTTTTTAATATT
* *
84903065 ATATTATTATGTATATG-TTTTAATATT
1 ATATTAATATATATATGTTTTTAATATT
84903092 AT
1 AT
84903094 TAGCTATCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 12 0.44
28 15 0.56
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (28 bp):
ATATTAATATATATATGTTTTTAATATT
Found at i:84908837 original size:46 final size:45
Alignment explanation
Indices: 84908777--84909039 Score: 368
Period size: 46 Copynumber: 5.7 Consensus size: 45
84908767 TGCCATAATG
* * *
84908777 TCTTTCAACTATGGTATTACTCATTTTC-T-TCCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATAT-CA-GTTGCCATGGTA
** *
84908823 TCTTTCAACCATGGTCTTATTCATTTCATATCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA-GTTGCCATGGTA
84908869 TCTTTCAACCATGGTCTTACACATTTCATATCAGATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAG-TTGCCATGGTA
* *
84908915 TCTTTCAACCATGATCTTACACACTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA-GTTGCCATGGTA
*
84908961 TCTTTCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA-GTTGCCATGGTA
84909007 TCTTTCAACCATGGTCTTACACATTTCATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
84909040 ACCATGGTCT
Statistics
Matches: 199, Mismatches: 14, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
45 4 0.02
46 193 0.97
47 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.12, T:0.39
Consensus pattern (45 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAGTTGCCATGGTA
Found at i:84909047 original size:26 final size:26
Alignment explanation
Indices: 84909011--84909065 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
84909001 ATGGTATCTT
*
84909011 TCAACCATGGTCTTACACATTTCATA
1 TCAACCATGGTCTTAAACATTTCATA
84909037 TCAACCATGGTCTTAAACATTTCATA
1 TCAACCATGGTCTTAAACATTTCATA
84909063 TCA
1 TCA
84909066 GGTTGCCATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.33, C:0.25, G:0.07, T:0.35
Consensus pattern (26 bp):
TCAACCATGGTCTTAAACATTTCATA
Found at i:84909066 original size:118 final size:118
Alignment explanation
Indices: 84908919--84909157 Score: 424
Period size: 118 Copynumber: 2.0 Consensus size: 118
84908909 ATGGTATCTT
*
84908919 TCAACCATGATCTTACACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
1 TCAACCATGATCTTAAACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
*
84908984 TTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
66 TTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
* * *
84909037 TCAACCATGGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATGATCTTAAACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
*
84909102 TTTCATATCAGGTTACTATGGTATCTTTCAACCATGGTCTTACACATTTCATA
66 TTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
84909155 TCA
1 TCA
84909158 GAGAGCACAC
Statistics
Matches: 115, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
118 115 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.36
Consensus pattern (118 bp):
TCAACCATGATCTTAAACACTTCATATCAGGTTGCCATGGTATCTTTCAACCATAGTCTTACACA
TTTCATATCAGGTTACCATGGTATCTTTCAACCATGGTCTTACACATTTCATA
Found at i:84909082 original size:72 final size:72
Alignment explanation
Indices: 84908965--84909111 Score: 276
Period size: 72 Copynumber: 2.0 Consensus size: 72
84908955 ATGGTATCTT
*
84908965 TCAACCATAGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATAGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
84909030 TTTCATA
66 TTTCATA
*
84909037 TCAACCATGGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 TCAACCATAGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
84909102 TTTCATA
66 TTTCATA
84909109 TCA
1 TCA
84909112 GGTTACTATG
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 73 1.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (72 bp):
TCAACCATAGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCATA
Found at i:84909090 original size:46 final size:46
Alignment explanation
Indices: 84909037--84909158 Score: 217
Period size: 46 Copynumber: 2.7 Consensus size: 46
84909027 ACATTTCATA
* *
84909037 TCAACCATGGTCTTAAACATTTCATATCAGGTTGCCATGGTATCTT
1 TCAACCATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTT
*
84909083 TCAACCATGGTCTTACACATTTCATATCAGGTTACTATGGTATCTT
1 TCAACCATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTT
84909129 TCAACCATGGTCTTACACATTTCATATCAG
1 TCAACCATGGTCTTACACATTTCATATCAG
84909159 AGAGCACACT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 73 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (46 bp):
TCAACCATGGTCTTACACATTTCATATCAGGTTACCATGGTATCTT
Found at i:84911580 original size:30 final size:30
Alignment explanation
Indices: 84911513--84911580 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
84911503 CACCCTTAAA
* * *
84911513 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
84911543 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
84911572 AGTATTTAC
1 A-TATTTAC
84911581 TCTTGGCCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Done.