Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 270 of 295
Found at i:86208096 original size:22 final size:22
Alignment explanation
Indices: 86208071--86208121 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
86208061 TTTTGAGGAT
*
86208071 AATTTTGACCCTCAACATTAAA
1 AATTTAGACCCTCAACATTAAA
* *
86208093 AATTTAGTCCCTCAACATTATA
1 AATTTAGACCCTCAACATTAAA
86208115 AATTTAG
1 AATTTAG
86208122 TAAAAGTGCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.39, C:0.20, G:0.06, T:0.35
Consensus pattern (22 bp):
AATTTAGACCCTCAACATTAAA
Found at i:86208122 original size:22 final size:22
Alignment explanation
Indices: 86208079--86208122 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86208069 ATAATTTTGA
86208079 CCCTCAACATTAAAAATTTAGT
1 CCCTCAACATTAAAAATTTAGT
*
86208101 CCCTCAACATTATAAATTTAGT
1 CCCTCAACATTAAAAATTTAGT
86208123 AAAAGTGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.34
Consensus pattern (22 bp):
CCCTCAACATTAAAAATTTAGT
Found at i:86210454 original size:88 final size:88
Alignment explanation
Indices: 86210305--86210480 Score: 289
Period size: 88 Copynumber: 2.0 Consensus size: 88
86210295 ATAAAGCTAA
*
86210305 CATATACTCTCACATACAATTACACTCAACTCGTATATATATAACTCATTTAACGATAATTCATC
1 CATATACTCTCACATACAATTACACTCAACTCGTATATATATAACTCATTTAACAATAATTCATC
86210370 AAGATAAAACAACGTATTCATGC
66 AAGATAAAACAACGTATTCATGC
* * ** *
86210393 CATATACTCTCACATGCAATTACACTCTACTCGTATATATATAGTTCATTTAACAATAATTCATG
1 CATATACTCTCACATACAATTACACTCAACTCGTATATATATAACTCATTTAACAATAATTCATC
*
86210458 AAGATAAAACAATGTATTCATGC
66 AAGATAAAACAACGTATTCATGC
86210481 TTTAATGACC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (88 bp):
CATATACTCTCACATACAATTACACTCAACTCGTATATATATAACTCATTTAACAATAATTCATC
AAGATAAAACAACGTATTCATGC
Found at i:86211952 original size:22 final size:22
Alignment explanation
Indices: 86211926--86211970 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
86211916 CATTGCTCTG
86211926 CACCGACGGGACTGCTCACTGC
1 CACCGACGGGACTGCTCACTGC
86211948 CACCGACGGGACTGCTCACTGC
1 CACCGACGGGACTGCTCACTGC
86211970 C
1 C
86211971 TTTTCTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.42, G:0.27, T:0.13
Consensus pattern (22 bp):
CACCGACGGGACTGCTCACTGC
Found at i:86212137 original size:6 final size:6
Alignment explanation
Indices: 86212121--86212156 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
86212111 ATTGCTGAGG
*
86212121 AAAGAAA AAAGAA AAAGAA AAAGAG AAAGAA AAAGA
1 AAAG-AA AAAGAA AAAGAA AAAGAA AAAGAA AAAGA
86212157 GAAGGAGAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 23 0.85
7 4 0.15
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:86212151 original size:18 final size:18
Alignment explanation
Indices: 86212128--86212174 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
86212118 AGGAAAGAAA
86212128 AAAGAAAAAGAAAAAGAG
1 AAAGAAAAAGAAAAAGAG
* *
86212146 AAAGAAAAAGAGAAGGAG
1 AAAGAAAAAGAAAAAGAG
*
86212164 -AAGAAGAAGAA
1 AAAGAAAAAGAA
86212175 GAGGGAGAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
17 9 0.36
18 16 0.64
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAGAG
Found at i:86212157 original size:12 final size:12
Alignment explanation
Indices: 86212120--86212159 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
86212110 CATTGCTGAG
86212120 GAAAGAAAAAAGA
1 GAAAG-AAAAAGA
*
86212133 AAAAGAAAAAGA
1 GAAAGAAAAAGA
86212145 GAAAGAAAAAGA
1 GAAAGAAAAAGA
86212157 GAA
1 GAA
86212160 GGAGAAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.78, C:0.00, G:0.23, T:0.00
Consensus pattern (12 bp):
GAAAGAAAAAGA
Found at i:86212474 original size:4 final size:5
Alignment explanation
Indices: 86212447--86212475 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
86212437 GTACAAAAAA
86212447 TATTT TATTT TATTT TATTT TA-TT TATTT
1 TATTT TATTT TATTT TATTT TATTT TATTT
86212476 GGTAAGTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
TATTT
Found at i:86212636 original size:14 final size:14
Alignment explanation
Indices: 86212617--86212645 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86212607 AGCTTAATAG
86212617 TATATTTTAAAAAA
1 TATATTTTAAAAAA
86212631 TATATTTTAAAAAA
1 TATATTTTAAAAAA
86212645 T
1 T
86212646 CTGAAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATTTTAAAAAA
Found at i:86213209 original size:146 final size:144
Alignment explanation
Indices: 86212641--86213534 Score: 1259
Period size: 146 Copynumber: 6.2 Consensus size: 144
86212631 TATATTTTAA
* * * *
86212641 AAAATCTG-AAAATAAAATAAA-AAAAGACCAAAATCAGAGTTTTTTACTAAATTAATATAAATA
1 AAAATCCGAAAAAAAAAATAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA-A
* * *
86212704 TACTAAAATAATACATATGAAACATTATGTACTAAAATATTATAAAAAAATAAAATACGAAAATA
65 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATA
*
86212769 GTATATTTTGAAAAAT
129 GTATATTTTAAAAAAT
* * *
86212785 AAAATCTGAAAATAAAATAAAAAAACAAACGGCCAAAAGCAGAG-TTTTTACTAAATTAATATAA
1 AAAATCCG-AAA-AAAA-AAATAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATAT-A
*
86212849 AAAAACTAAAATAATACATTTGAAAAATTATGTACTAAAATAATATAAAAAATAAAATACGAAAA
62 AAAAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAA
86212914 TAGTATATTTTAAAAAAT
127 TAGTATATTTTAAAAAAT
* * * *
86212932 AAAATCTG-AAAATAAAATCAAA-AAACGGCCAAAATCACAGATTTTTACTAAATTAATATAAAA
1 AAAATCCGAAAAAAAAAAT-AAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAA
86212995 AACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATA
65 AACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAATA
*
86213058 ATATATTTTAAAAAAT
129 GTATATTTTAAAAAAT
* *
86213074 AAAATCCGAAAAAAAAAATAAA-AAAGGGCCAAAATCAGAGTTTTTTTTTCTAAATTAATATAAA
1 AAAATCCGAAAAAAAAAATAAACAAACGGCCAAAATCAGAG--TTTTTTACTAAATTAATATAAA
*
86213138 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAAATAAAATATGAAAAT
64 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACGAAAAT
86213203 AGTATATTTTAAAAAAT
128 AGTATATTTTAAAAAAT
* * *
86213220 AAAATCCGAAAATAAAATAA-AAATAAATGGCCAAAATCAAAGTTTTTTACTAAATTAATATAAA
1 AAAATCCGAAAA-AAAA-AATAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAA
* *
86213284 AAACTAAAATAATACATTTGAAATATTATGTACTAAAATAATATAAAAAATAAAATACAAAAATA
64 AAACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATA
*
86213349 GTATATTTTAAAAAGT
129 GTATATTTTAAAAAAT
* * *
86213365 AAAATCCGAAAATAAAATAAAAAACAAATGGCCAAAATCATAGTTTTTTACTAAATTAATATAAA
1 AAAATCCGAAAA-AAAA-AATAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATAT--A
* * *
86213430 AAAATACAAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAATTATAATACGAAA
62 AAAA-ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAA
86213495 ATAGTATATTTTAAAAAAT
126 ATAGTATATTTTAAAAAAT
*
86213514 AAAATCC-AAAAATAAAATAAA
1 AAAATCCGAAAAAAAAAATAAA
86213535 TACCAAAATA
Statistics
Matches: 688, Mismatches: 41, Indels: 40
0.89 0.05 0.05
Matches are distributed among these distances:
141 25 0.04
142 62 0.09
143 47 0.07
144 68 0.10
145 56 0.08
146 184 0.27
147 57 0.08
148 91 0.13
149 98 0.14
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.28
Consensus pattern (144 bp):
AAAATCCGAAAAAAAAAATAAACAAACGGCCAAAATCAGAGTTTTTTACTAAATTAATATAAAAA
ACTAAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAAATAAAATACGAAAATAGT
ATATTTTAAAAAAT
Found at i:86219853 original size:14 final size:14
Alignment explanation
Indices: 86219834--86219863 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
86219824 TATTTGACTG
86219834 TTAGTCCATCATTT
1 TTAGTCCATCATTT
*
86219848 TTAGTCCATTATTT
1 TTAGTCCATCATTT
86219862 TT
1 TT
86219864 GTGTCGTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.07, T:0.57
Consensus pattern (14 bp):
TTAGTCCATCATTT
Found at i:86220588 original size:132 final size:131
Alignment explanation
Indices: 86220200--86220597 Score: 467
Period size: 131 Copynumber: 3.0 Consensus size: 131
86220190 ATTATTCATT
* * * *
86220200 TAAAAAC-CTTTCAAAACAAAGGCAATGTTCGATGTTTGGCAATCCGCGGAATCGTGTCCTATCG
1 TAAAAACTCTTT-AAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTG-CCTATCG
* * ** *
86220264 TGCTGGATTGCAATTTCTCGTTTGCTCAAAATAATCGAACATCCCTTTAGAATTTCACTCATGGT
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTT
*
86220329 TCC
129 TTC
* * * *
86220332 TAAAAACTCTTTGAAACGAAGGAAATGTTCGATGTTTGGCGATT-TGAGAATCGTGCCCTATCGT
1 TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTG-CCTATCGT
** * * * * * * * *
86220396 GCTGGGTTGCGCTTTTTCATTTGTTCAAAACAATTGAAGATTCCTTCGAAATTTTACTCATGTTT
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTTT
86220461 TC
130 TC
* *
86220463 TAAAAACTCTTTAAAACGAGGGAAATGTTCGATGTTTGGCAATTCGGGGAATAGTGCCTTATCGT
1 TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCC-TATCGT
* * * * *
86220528 GCTGGGTTGCAATCTCCCGTTTTTTCAAAATAATCGAATATCCCTTCGGAATTTCACTCATATTT
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTTT
86220593 TC
130 TC
86220595 TAA
1 TAA
86220598 GGCGAGGCAA
Statistics
Matches: 218, Mismatches: 45, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
131 110 0.50
132 104 0.48
133 4 0.02
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (131 bp):
TAAAAACTCTTTAAAACGAAGGAAATGTTCGATGTTTGGCAATTCGGGGAATCGTGCCTATCGTG
CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAACATCCCTTCGGAATTTCACTCATGTTTT
C
Found at i:86223668 original size:25 final size:27
Alignment explanation
Indices: 86223640--86223689 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 27
86223630 ATGGTATTCT
*
86223640 TTTTGTTTTTGGCTT-TT-TCTTTTGG
1 TTTTCTTTTTGGCTTCTTCTCTTTTGG
86223665 TTTTCTTTTTGGCTTCTTCTCTTTT
1 TTTTCTTTTTGGCTTCTTCTCTTTT
86223690 CTTTTTGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 14 0.64
26 2 0.09
27 6 0.27
ACGTcount: A:0.00, C:0.14, G:0.14, T:0.72
Consensus pattern (27 bp):
TTTTCTTTTTGGCTTCTTCTCTTTTGG
Found at i:86227820 original size:21 final size:22
Alignment explanation
Indices: 86227768--86227823 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
86227758 GCCTGTTCCT
*
86227768 ACGGCCATGT-CCCTAGTCCAC
1 ACGGCCATGTGCCTTAGTCCAC
* *
86227789 ACGGGCGTGTGCCTTAGT-CAC
1 ACGGCCATGTGCCTTAGTCCAC
*
86227810 ATGGCCATGTGCCT
1 ACGGCCATGTGCCT
86227824 CTCTTTACAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 22 0.79
22 6 0.21
ACGTcount: A:0.16, C:0.34, G:0.27, T:0.23
Consensus pattern (22 bp):
ACGGCCATGTGCCTTAGTCCAC
Found at i:86230543 original size:19 final size:20
Alignment explanation
Indices: 86230503--86230543 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
86230493 CTAAACCGGT
*
86230503 AACTTAGGAAATTTTTGGAA
1 AACTTAGGAAATTTTTGCAA
*
86230523 AACTTA-GAAATTTTTTCAA
1 AACTTAGGAAATTTTTGCAA
86230542 AA
1 AA
86230544 TACAAGGGAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (20 bp):
AACTTAGGAAATTTTTGCAA
Found at i:86236856 original size:40 final size:40
Alignment explanation
Indices: 86236793--86236974 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
86236783 TATTCGAATG
* * * *
86236793 ATAACCCGGCTAAGTCCCTAAGGCAATTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
86236833 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
86236873 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
86236913 ATAACCGGGCTAGGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
86236953 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
86236975 TACTTGGTTT
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 15 0.12
40 114 0.88
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:86241691 original size:39 final size:39
Alignment explanation
Indices: 86241596--86241857 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
86241586 TTGAATGATG
*
86241596 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
86241634 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
86241675 TTCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
86241714 TCCGGGCTAAGCCCGAAGGAATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
86241753 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
86241792 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
86241831 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
86241858 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 18, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
39 129 0.65
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:86251030 original size:19 final size:19
Alignment explanation
Indices: 86251006--86251052 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
86250996 CGACGCTTTC
*
86251006 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTACAT-CA
86251025 TTTGCATTACATTACATCA
1 TTTGCATTACATTACATCA
*
86251044 TATGCATTA
1 TTTGCATTA
86251053 AAGCCCATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.45
Consensus pattern (19 bp):
TTTGCATTACATTACATCA
Found at i:86266242 original size:22 final size:22
Alignment explanation
Indices: 86266216--86266262 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
86266206 TGTTTCAGTT
86266216 AACAGTGCTTTTAAATTTTCAA
1 AACAGTGCTTTTAAATTTTCAA
*
86266238 AACAGTGCTTTTAACTTTTCAA
1 AACAGTGCTTTTAAATTTTCAA
86266260 AAC
1 AAC
86266263 TCTGTTGGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (22 bp):
AACAGTGCTTTTAAATTTTCAA
Found at i:86273707 original size:14 final size:14
Alignment explanation
Indices: 86273688--86273715 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
86273678 ATTTGGCAAG
86273688 CTTAGTCTTTGAAT
1 CTTAGTCTTTGAAT
86273702 CTTAGTCTTTGAAT
1 CTTAGTCTTTGAAT
86273716 TTAAGGTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
CTTAGTCTTTGAAT
Found at i:86278869 original size:28 final size:28
Alignment explanation
Indices: 86278838--86278937 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
86278828 CTGACTGATT
86278838 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
86278866 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
86278895 TCACACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
86278923 TCGCACACATAGTGC
1 TCGCACACATAGTGC
86278938 CACACATGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.02
28 36 0.60
29 22 0.37
30 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:86278958 original size:40 final size:40
Alignment explanation
Indices: 86278898--86278978 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
86278888 ACCAATCTCA
*
86278898 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGC
1 CACACATAGTGCTCGATTGAAGAACTCGCACACACAGTGC
* * * * *
86278938 CACACATGGTGCTCGGTTGAAGAGCTTGCACATACAGTGC
1 CACACATAGTGCTCGATTGAAGAACTCGCACACACAGTGC
86278978 C
1 C
86278979 TCATAATTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
CACACATAGTGCTCGATTGAAGAACTCGCACACACAGTGC
Found at i:86284651 original size:28 final size:28
Alignment explanation
Indices: 86284620--86284719 Score: 130
Period size: 28 Copynumber: 3.5 Consensus size: 28
86284610 CTGACTGATT
86284620 TCGCACACATAGTGCTCGATTAAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
* * *
86284648 TCGCACACATAGTGCCTCAATTACCA-ATC
1 TCGCACACATAGTG-CTCGATTA-AAGAAC
* *
86284677 TCACACACATAGTGCTCGATTGAAGAAC
1 TCGCACACATAGTGCTCGATTAAAGAAC
86284705 TCGCACACATAGTGC
1 TCGCACACATAGTGC
86284720 CACACATGGT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
27 1 0.02
28 36 0.60
29 22 0.37
30 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (28 bp):
TCGCACACATAGTGCTCGATTAAAGAAC
Found at i:86284740 original size:40 final size:40
Alignment explanation
Indices: 86284680--86284760 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
86284670 ACCAATCTCA
*
86284680 CACACATAGTGCTCGATTGAAGAACTCGCACACATAGTGC
1 CACACATAGTGCTCGATTGAAGAACTCGCACACACAGTGC
* * * * *
86284720 CACACATGGTGCTCGGTTGAAGAGCTTGCACATACAGTGC
1 CACACATAGTGCTCGATTGAAGAACTCGCACACACAGTGC
86284760 C
1 C
86284761 TCATAATTCC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.21
Consensus pattern (40 bp):
CACACATAGTGCTCGATTGAAGAACTCGCACACACAGTGC
Found at i:86296516 original size:27 final size:27
Alignment explanation
Indices: 86296486--86296663 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86296476 ATATTGAGTC
* * * *
86296486 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86296513 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86296540 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86296568 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86296595 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86296622 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86296649 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86296664 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86296625 original size:82 final size:81
Alignment explanation
Indices: 86296507--86296662 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86296497 TGCTATATAA
* *
86296507 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86296572 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86296589 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86296653 CACTTAGTGC
65 CACTTAGTGC
86296663 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86305512 original size:28 final size:27
Alignment explanation
Indices: 86305449--86305597 Score: 205
Period size: 28 Copynumber: 5.6 Consensus size: 27
86305439 ATATTAAGTC
* *
86305449 CGCACACTCAGTGCTATATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
86305476 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
*
86305504 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
*
86305531 CGCACAC-TAGTGC--CATAGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
86305555 CGCACACTTAGTGCTACATAGTCCAACT
1 CGCACACTTAGTGCTACATAGT-CAACT
86305583 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86305598 GTACAATTTA
Statistics
Matches: 111, Mismatches: 6, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
24 18 0.16
25 6 0.05
26 6 0.05
27 37 0.33
28 44 0.40
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:86309539 original size:77 final size:77
Alignment explanation
Indices: 86309432--86309575 Score: 200
Period size: 78 Copynumber: 1.9 Consensus size: 77
86309422 AAAGTTTATT
* ** * *
86309432 TATTTAAATTGCAAAAAAAACCCATAAAATTGA-AAATAAAATGGCAAAAAAGTCGTTACATTAA
1 TATTTAAATTGAAAAAAAAACAAATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAAA
86309496 TACAAAGTTGAC
66 TACAAAGTTGAC
* * *
86309508 TATTTAAATTGTAAAAAAAAACAAATTAAATTGATAAATAAAATGTCAAAAAATTCATTACATAA
1 TATTTAAATTG-AAAAAAAAACAAATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAA
86309573 ATA
65 ATA
86309576 TGAAGTTATT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 11 0.19
77 18 0.31
78 29 0.50
ACGTcount: A:0.56, C:0.09, G:0.08, T:0.28
Consensus pattern (77 bp):
TATTTAAATTGAAAAAAAAACAAATAAAATTGATAAATAAAATGGCAAAAAAGTCATTACATAAA
TACAAAGTTGAC
Found at i:86312945 original size:25 final size:26
Alignment explanation
Indices: 86312911--86312966 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
86312901 TACTTTTAAT
* *
86312911 AAAAATAAAAATAATATTTTA-TTTA
1 AAAAACAAAAATAATATTTTAGTATA
86312936 AAAAACAAAAATAATATTTTAGTATA
1 AAAAACAAAAATAATATTTTAGTATA
86312962 AAAAA
1 AAAAA
86312967 AGGAGTTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (26 bp):
AAAAACAAAAATAATATTTTAGTATA
Found at i:86314628 original size:21 final size:19
Alignment explanation
Indices: 86314586--86314668 Score: 93
Period size: 19 Copynumber: 4.6 Consensus size: 19
86314576 ATATATAGTA
86314586 AAAATATATAACATATAAT
1 AAAATATATAACATATAAT
86314605 AAAATATA-AAC--ATAAT
1 AAAATATATAACATATAAT
* * * *
86314621 AGAATAAATAATATATATT
1 AAAATATATAACATATAAT
86314640 AAAA-ATATAACATATAAT
1 AAAATATATAACATATAAT
*
86314658 AAAATTTATAA
1 AAAATATATAA
86314669 AGATGTATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
16 11 0.22
17 2 0.04
18 18 0.35
19 20 0.39
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (19 bp):
AAAATATATAACATATAAT
Found at i:86314656 original size:25 final size:25
Alignment explanation
Indices: 86314571--86314658 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
86314561 AAAATAAATA
86314571 ATAATATATATAGTAAAAATATATAACAT
1 ATAATATATAT--T-AAAA-ATATAACAT
* * * * *
86314600 ATAATAAAATATAAACATAATAGAATAA
1 ATAAT-ATATATTAA-A-AATATAACAT
86314628 ATAATATATATTAAAAATATAACAT
1 ATAATATATATTAAAAATATAACAT
86314653 ATAATA
1 ATAATA
86314659 AAATTTATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
25 13 0.28
26 1 0.02
27 9 0.20
28 12 0.26
29 6 0.13
30 5 0.11
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (25 bp):
ATAATATATATTAAAAATATAACAT
Found at i:86314668 original size:55 final size:54
Alignment explanation
Indices: 86314563--86314690 Score: 156
Period size: 53 Copynumber: 2.4 Consensus size: 54
86314553 AATATGGTAA
86314563 AATAAATAATAATATATATAGTAAAAATATATAACATATAATAAAATATAAACAT
1 AATAAATAATAATATATATA-TAAAAATATATAACATATAATAAAATATAAACAT
*
86314618 AATAGAATAAATAATATATAT-T-AAAA-ATATAACATATAATAAAATTTATAAAGAT
1 AATA-AAT-AATAATATATATATAAAAATATATAACATATAATAAAA--TATAAACAT
* *
86314673 -GTATATAATAATATATAT
1 AATAAATAATAATATATAT
86314691 TATTTTATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
52 12 0.18
53 20 0.30
54 6 0.09
55 13 0.20
56 3 0.05
57 12 0.18
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (54 bp):
AATAAATAATAATATATATATAAAAATATATAACATATAATAAAATATAAACAT
Found at i:86316349 original size:79 final size:80
Alignment explanation
Indices: 86316158--86316358 Score: 262
Period size: 80 Copynumber: 2.5 Consensus size: 80
86316148 AGTCTTGAGT
* ** * * * **
86316158 TCTTCGATCTGCTCCCCGTTGAATACAGAGACGCCCAAATCATCTTGAATCAGCCTTAATGAAGG
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATATTGAATCAGCCTCAACAAAGG
86316223 TCAGATCTGCTAATG
66 TCAGATCTGCTAATG
* * * * * *
86316238 TCTTCGATTTGCTCTCCGTCCATTACAAAGATGCCCAAATCATATTGGATCTGCCTCAACAAAGG
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATATTGAATCAGCCTCAACAAAGG
86316303 TCAGATCTGCT-ATG
66 TCAGATCTGCTAATG
86316317 TCTTCGATTTGCTCCCCGTCAAATACAGAGATG-CCAAATCAT
1 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCAT
86316359 CTTCTTGGTT
Statistics
Matches: 104, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
78 9 0.09
79 32 0.31
80 63 0.61
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (80 bp):
TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCCAAATCATATTGAATCAGCCTCAACAAAGG
TCAGATCTGCTAATG
Found at i:86316377 original size:44 final size:42
Alignment explanation
Indices: 86316317--86316539 Score: 187
Period size: 44 Copynumber: 5.0 Consensus size: 42
86316307 ATCTGCTATG
*
86316317 TCTTCGATTTGCTCCCCGTCAAATACAGAGATGCCAAATCATCT
1 TCTTCGATTTGCTCTCCGTC-AATACAGAGATGCCAAATC-TCT
* * * * * *
86316361 TCTTGGTTTTGCTCCCCGTCGAATACGGAGATACCAAATCTGTCA
1 TCTTCGATTTGCTCTCCGTC-AATACAGAGATGCCAAATC--TCT
* *
86316406 TCTTGGATTTGCTCTTCGTCAAAATAC-GAAGATGCCAAATCTACT
1 TCTTCGATTTGCTCTCCGTC--AATACAG-AGATGCCAAATCT-CT
* * *
86316451 ATCTTCGATCTGCTCTCTGACAATACAGAGATGCCAAATCTGCT
1 -TCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCT-CT
* * *
86316495 ATCTTCGATTCGCTCTCTGACAATACAGAGATGCCAAATCATCT
1 -TCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATC-TCT
86316539 T
1 T
86316540 AGATCTGCTT
Statistics
Matches: 151, Mismatches: 21, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
43 1 0.01
44 96 0.64
45 23 0.15
46 31 0.21
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (42 bp):
TCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTCT
Found at i:86319503 original size:3 final size:3
Alignment explanation
Indices: 86319398--86319487 Score: 51
Period size: 3 Copynumber: 30.0 Consensus size: 3
86319388 TCATTTTAAA
* * * * * *
86319398 TAT TAT T-T ATAT TAT TCT CAT GAT TAT CAT TCT TAT TAT TAC TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
86319443 TAT TTT TAT TCCT T-T TAT TAT TCAT TAT TAA TA- TAT TAT TAT TAT
1 TAT TAT TAT T-AT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
86319488 AGCTACTATT
Statistics
Matches: 66, Mismatches: 15, Indels: 12
0.71 0.16 0.13
Matches are distributed among these distances:
2 5 0.08
3 55 0.83
4 6 0.09
ACGTcount: A:0.29, C:0.09, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:86320011 original size:29 final size:30
Alignment explanation
Indices: 86319954--86320011 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
86319944 TATATCATCT
* *
86319954 TATGTATACATTCTTGAATACTATGTTATA
1 TATGTATACATTCTTGAATACCATATTATA
* *
86319984 TATGTATATATT-TTTAATACCATATTAT
1 TATGTATACATTCTTGAATACCATATTAT
86320012 GTATATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (30 bp):
TATGTATACATTCTTGAATACCATATTATA
Found at i:86320502 original size:34 final size:34
Alignment explanation
Indices: 86320425--86320503 Score: 85
Period size: 34 Copynumber: 2.3 Consensus size: 34
86320415 TTATATTTCT
*
86320425 TATTATTATTAATATTAGTATATGTTTTATTATA
1 TATTATTAATAATATTAGTATATGTTTTATTATA
86320459 TATCT-TTAATACATA-TAGGTATATG-TTTATGTA-A
1 TAT-TATTAATA-ATATTA-GTATATGTTTTAT-TATA
86320493 TATTATTAATA
1 TATTATTAATA
86320504 GGTGTTTTCA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
33 1 0.03
34 25 0.64
35 13 0.33
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.53
Consensus pattern (34 bp):
TATTATTAATAATATTAGTATATGTTTTATTATA
Found at i:86320644 original size:19 final size:19
Alignment explanation
Indices: 86320618--86320659 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
86320608 ATGTTGTATT
86320618 TTTATATATATTATGTATATA
1 TTTATA-ATATT-TGTATATA
*
86320639 TTTATAATATTTTTATATA
1 TTTATAATATTTGTATATA
86320658 TT
1 TT
86320660 ATGTACCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 9 0.45
20 5 0.25
21 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TTTATAATATTTGTATATA
Found at i:86323564 original size:85 final size:85
Alignment explanation
Indices: 86323421--86323599 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
86323411 GGCCGGCCAT
86323421 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
86323486 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
86323506 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
86323571 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
86323591 GGGCATGGG
1 GAGCATGGG
86323600 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:86325595 original size:47 final size:47
Alignment explanation
Indices: 86325544--86325832 Score: 425
Period size: 47 Copynumber: 6.1 Consensus size: 47
86325534 TTAGGATTTT
* * *
86325544 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** *
86325591 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCATATATGTGATAAGGCCGAATGGCCA
* *
86325642 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
86325689 ATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
86325736 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
86325783 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
86325830 ATG
1 ATG
86325833 CGAAACGTGT
Statistics
Matches: 224, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
47 179 0.80
49 2 0.01
51 43 0.19
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:86325646 original size:24 final size:24
Alignment explanation
Indices: 86325618--86325693 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
86325608 CCGTATATAT
86325618 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * **
86325642 ATGTGATGA-ATGTG--AACAT-GCGT
1 ATGTG-TGATAAG-GCCGA-ATGGCCA
86325665 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
86325689 ATGTG
1 ATGTG
86325694 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.29, C:0.13, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:86325648 original size:22 final size:22
Alignment explanation
Indices: 86325621--86325742 Score: 63
Period size: 22 Copynumber: 5.3 Consensus size: 22
86325611 TATATATATG
86325621 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * **
86325643 TGTGATGAATG-TGAACAT-GCGTA
1 TGTGAT-AAGGCCG-A-ATGGCCAA
86325666 TGTGTGATAAGGCCGAATGGCCAA
1 T--GTGATAAGGCCGAATGGCCAA
* * *
86325690 TGTGATGAATG-TGAACAT-GCGTATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
86325715 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
86325737 TGTGAT
1 TGTGAT
86325743 GAATGTGAAC
Statistics
Matches: 72, Mismatches: 14, Indels: 28
0.63 0.12 0.25
Matches are distributed among these distances:
22 20 0.28
23 19 0.26
24 19 0.26
25 14 0.19
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:86325895 original size:46 final size:46
Alignment explanation
Indices: 86325806--86325896 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
86325796 GAACATGAAT
* * * *
86325806 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
86325852 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
86325897 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:86325903 original size:141 final size:140
Alignment explanation
Indices: 86325555--86325881 Score: 390
Period size: 141 Copynumber: 2.3 Consensus size: 140
86325545 TGTGATGGAT
* * * **
86325555 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATAT
1 GTGAACATGCGTATATGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA--C--ATGCATAT
* * ** *
86325620 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATG
62 ATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATG
* *
86325685 GCCAATGTGATGAAT
127 GCCAATGCGA-GAAC
* *
86325700 GTGAACATGCGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GTGAACATGCGTATATGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
* *
86325765 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
86325830 ATGCGA-AAC
131 ATGCGAGAAC
* * *
86325839 GTGTATGAGATG-G-ATATGTGGTAAAGCCAAATGGCTAATGTGA
1 GTG-A--ACATGCGTATATGTGATAAAGCCAAATGGCCAATGTGA
86325882 GATATGTACG
Statistics
Matches: 162, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
139 5 0.03
140 27 0.17
141 74 0.46
142 4 0.02
143 1 0.01
145 51 0.31
ACGTcount: A:0.32, C:0.12, G:0.30, T:0.25
Consensus pattern (140 bp):
GTGAACATGCGTATATGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
ATGCGAGAAC
Found at i:86326091 original size:37 final size:37
Alignment explanation
Indices: 86326041--86326149 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
86326031 GGAAATATAT
86326041 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
86326078 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
86326115 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
86326150 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:86327765 original size:40 final size:40
Alignment explanation
Indices: 86327402--86327753 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
86327392 GAGAATTGAG
*
86327402 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
86327442 AGTGATGTATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
86327482 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
86327522 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
86327562 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
86327602 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
86327642 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * ** *
86327682 AGTGATATATCTGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
86327722 GGTGTTATATCCGGGCTAGGTCCCGAGGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCA
86327754 ATCATGCTGG
Statistics
Matches: 292, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 292 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:86328034 original size:58 final size:57
Alignment explanation
Indices: 86327965--86328073 Score: 155
Period size: 57 Copynumber: 1.9 Consensus size: 57
86327955 CGAATGATTA
* * *
86327965 GAGGCACTGTGTGTGCAAATTCTTTTAACCGAGCACTATGTGTGCGAAATCGGTAATT
1 GAGGCACTGTGTGTGCAAATTC-TTCAACCAAGCACTATCTGTGCGAAATCGGTAATT
* * *
86328023 GAGGCACTGTGTGTGCGAGTTCTTCAACCAAGCACTATCTGTGCGAGATCG
1 GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATCTGTGCGAAATCG
86328074 ATCAGTGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
57 25 0.56
58 20 0.44
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (57 bp):
GAGGCACTGTGTGTGCAAATTCTTCAACCAAGCACTATCTGTGCGAAATCGGTAATT
Found at i:86329667 original size:85 final size:85
Alignment explanation
Indices: 86329524--86329702 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
86329514 GGCCGGCCAT
86329524 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
86329589 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
86329609 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
86329674 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
86329694 GGGCATGGG
1 GAGCATGGG
86329703 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:86331696 original size:47 final size:47
Alignment explanation
Indices: 86331642--86331930 Score: 425
Period size: 47 Copynumber: 6.1 Consensus size: 47
86331632 TTAGGATTTT
* * *
86331642 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* **
86331689 ATTTGATGAATGTGAACTCATATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--CATGCATATA--TGTGATAAGGCCGAATGGCCA
*
86331740 ATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
86331787 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
86331834 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
86331881 ATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
86331928 ATG
1 ATG
86331931 CGAAACGTGT
Statistics
Matches: 220, Mismatches: 18, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
47 171 0.78
49 13 0.06
51 36 0.16
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:86331746 original size:22 final size:22
Alignment explanation
Indices: 86331719--86331793 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
86331709 TATATATATG
86331719 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
86331741 TGTGATGAATG-TGAACAT-GCGTATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
86331766 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
86331788 TGTGAT
1 TGTGAT
86331794 GAATGTGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 9 0.22
25 8 0.20
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:86331993 original size:46 final size:46
Alignment explanation
Indices: 86331904--86331994 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
86331894 GAACATGAAT
* * * *
86331904 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
86331950 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
86331995 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:86332001 original size:141 final size:140
Alignment explanation
Indices: 86331653--86331979 Score: 401
Period size: 141 Copynumber: 2.3 Consensus size: 140
86331643 TGTGATGGAT
* * * **
86331653 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATTTGATGAATGTGAACTCATATATATAT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA--CATGCATATA-
* **
86331718 GTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATATGTGATAAGGCCGAATG
63 -TGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATG
* *
86331783 GCCAATGTGATGAAT
127 GCCAATGCGA-GAAC
* *
86331798 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
* *
86331863 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
86331928 ATGCGA-AAC
131 ATGCGAGAAC
* *
86331937 GTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 GTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
86331980 GATATGTACG
Statistics
Matches: 164, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
139 5 0.03
140 20 0.12
141 70 0.43
142 10 0.06
143 8 0.05
145 51 0.31
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (140 bp):
GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
ATGCGAGAAC
Found at i:86332189 original size:37 final size:37
Alignment explanation
Indices: 86332139--86332210 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
86332129 GGAAATATAT
* *
86332139 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATAACTACATGTGGAGATTTTG
*
86332176 TCCGGGTAAGACCCGATAACTTCATGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACATGTGGAGATTT
86332211 CTTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACATGTGGAGATTTTG
Found at i:86338529 original size:11 final size:11
Alignment explanation
Indices: 86338493--86338548 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
86338483 CATGGTATGT
86338493 ATGATATGCAC
1 ATGATATGCAC
* *
86338504 ATGACATG--T
1 ATGATATGCAC
86338513 ATGATATGCAC
1 ATGATATGCAC
*
86338524 ATGATATG--T
1 ATGATATGCAC
86338533 ATGATATGCAC
1 ATGATATGCAC
86338544 ATGAT
1 ATGAT
86338549 GTAATCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:86338548 original size:20 final size:20
Alignment explanation
Indices: 86338482--86338548 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
86338472 ATTTTGATAA
*
86338482 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
86338502 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
86338522 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86338542 ACATGAT
1 ACATGAT
86338549 GTAATCATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86338639 original size:23 final size:24
Alignment explanation
Indices: 86338597--86338654 Score: 91
Period size: 23 Copynumber: 2.4 Consensus size: 24
86338587 GGAGGAAGTG
86338597 AAAAAGGGCTTATGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
*
86338621 TAAAAGGGCTT-TGCCCCAGTTAT
1 AAAAAGGGCTTATGCCCCAGTTAT
86338644 AAAAAGAGGCT
1 AAAAAG-GGCT
86338655 AGACCTCCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 17 0.55
24 14 0.45
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (24 bp):
AAAAAGGGCTTATGCCCCAGTTAT
Found at i:86338897 original size:31 final size:31
Alignment explanation
Indices: 86338862--86338925 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
86338852 CGTTTACAGT
86338862 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
*
86338893 AAAGGCTTCGGCCCAGTGATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
86338924 AA
1 AA
86338926 TAAGAAAAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.16, G:0.23, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:86340280 original size:30 final size:32
Alignment explanation
Indices: 86340229--86340288 Score: 81
Period size: 30 Copynumber: 1.9 Consensus size: 32
86340219 AATGTATAGT
*
86340229 AAAATATATAACATATGATAAAATTTATAAAC
1 AAAATATATAACATATGATAAAATATATAAAC
86340261 AAAATATAT-A-ATGAT-ATAAAATATATAA
1 AAAATATATAACAT-ATGATAAAATATATAA
86340289 TAGATAAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 14 0.54
31 3 0.12
32 9 0.35
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (32 bp):
AAAATATATAACATATGATAAAATATATAAAC
Found at i:86340283 original size:17 final size:16
Alignment explanation
Indices: 86340223--86340442 Score: 75
Period size: 16 Copynumber: 13.4 Consensus size: 16
86340213 ATGAATAATG
86340223 TATAGTAAAATATATAACA
1 TATA-TAAAATATAT-A-A
86340242 TATGATAAAAT-T-T-A
1 TAT-ATAAAATATATAA
* *
86340256 TAAACAAAATATATAA
1 TATATAAAATATATAA
86340272 TGATATAAAATATATAA
1 T-ATATAAAATATATAA
* * *
86340289 TAGATAAAGTATAAAA
1 TATATAAAATATATAA
86340305 TA-ATAAAA-ATGAT-A
1 TATATAAAATAT-ATAA
* *
86340319 TA-AT-AAATATTTTA
1 TATATAAAATATATAA
* * *
86340333 CATATAAATATGGTAAAA
1 TATATAAA-AT-ATATAA
*
86340351 TAAATAATAATATAT-A
1 TATATAA-AATATATAA
86340367 TAGTA-AAAATATATAACA
1 TA-TATAAAATATAT-A-A
86340385 TATAATAAAATATA-AA
1 TAT-ATAAAATATATAA
* * *
86340401 CATAATAGAATAAATAA
1 TAT-ATAAAATATATAA
*
86340418 TATATATTAAAAATATAA
1 TATATA--AAATATATAA
*
86340436 CATATAA
1 TATATAA
86340443 TAAAATTTAT
Statistics
Matches: 151, Mismatches: 28, Indels: 47
0.67 0.12 0.21
Matches are distributed among these distances:
13 10 0.07
14 15 0.10
15 16 0.11
16 39 0.26
17 26 0.17
18 26 0.17
19 18 0.12
20 1 0.01
ACGTcount: A:0.60, C:0.03, G:0.05, T:0.32
Consensus pattern (16 bp):
TATATAAAATATATAA
Found at i:86340414 original size:21 final size:19
Alignment explanation
Indices: 86340372--86340454 Score: 93
Period size: 19 Copynumber: 4.6 Consensus size: 19
86340362 ATATATAGTA
86340372 AAAATATATAACATATAAT
1 AAAATATATAACATATAAT
86340391 AAAATATA-AAC--ATAAT
1 AAAATATATAACATATAAT
* * * *
86340407 AGAATAAATAATATATATT
1 AAAATATATAACATATAAT
86340426 AAAA-ATATAACATATAAT
1 AAAATATATAACATATAAT
*
86340444 AAAATTTATAA
1 AAAATATATAA
86340455 AGATGTATAT
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
16 11 0.22
17 2 0.04
18 18 0.35
19 20 0.39
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (19 bp):
AAAATATATAACATATAAT
Found at i:86340442 original size:25 final size:25
Alignment explanation
Indices: 86340357--86340444 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 25
86340347 AAAATAAATA
86340357 ATAATATATATAGTAAAAATATATAACAT
1 ATAATATATAT--T-AAAA-ATATAACAT
* * * * *
86340386 ATAATAAAATATAAACATAATAGAATAA
1 ATAAT-ATATATTAA-A-AATATAACAT
86340414 ATAATATATATTAAAAATATAACAT
1 ATAATATATATTAAAAATATAACAT
86340439 ATAATA
1 ATAATA
86340445 AAATTTATAA
Statistics
Matches: 46, Mismatches: 10, Indels: 10
0.70 0.15 0.15
Matches are distributed among these distances:
25 13 0.28
26 1 0.02
27 9 0.20
28 12 0.26
29 6 0.13
30 5 0.11
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.32
Consensus pattern (25 bp):
ATAATATATATTAAAAATATAACAT
Found at i:86340454 original size:55 final size:54
Alignment explanation
Indices: 86340349--86340476 Score: 156
Period size: 53 Copynumber: 2.4 Consensus size: 54
86340339 AATATGGTAA
86340349 AATAAATAATAATATATATAGTAAAAATATATAACATATAATAAAATATAAACAT
1 AATAAATAATAATATATATA-TAAAAATATATAACATATAATAAAATATAAACAT
*
86340404 AATAGAATAAATAATATATAT-T-AAAA-ATATAACATATAATAAAATTTATAAAGAT
1 AATA-AAT-AATAATATATATATAAAAATATATAACATATAATAAAA--TATAAACAT
* *
86340459 -GTATATAATAATATATAT
1 AATAAATAATAATATATAT
86340477 TATTTTATAT
Statistics
Matches: 66, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
52 12 0.18
53 20 0.30
54 6 0.09
55 13 0.20
56 3 0.05
57 12 0.18
ACGTcount: A:0.61, C:0.02, G:0.03, T:0.34
Consensus pattern (54 bp):
AATAAATAATAATATATATATAAAAATATATAACATATAATAAAATATAAACAT
Found at i:86342147 original size:14 final size:14
Alignment explanation
Indices: 86342128--86342154 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
86342118 GCTACCATTT
86342128 TACTATTATGTTGC
1 TACTATTATGTTGC
86342142 TACTATTATGTTG
1 TACTATTATGTTG
86342155 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.52
Consensus pattern (14 bp):
TACTATTATGTTGC
Found at i:86348405 original size:26 final size:26
Alignment explanation
Indices: 86348374--86348481 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
86348364 TGAAATGCCC
*
86348374 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
86348400 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
86348426 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
86348452 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86348478 ATCA
1 ATCA
86348482 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86353576 original size:40 final size:40
Alignment explanation
Indices: 86353509--86353718 Score: 296
Period size: 40 Copynumber: 5.3 Consensus size: 40
86353499 GGACTAAGAT
* * * **
86353509 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
*
86353549 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGAGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
86353589 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
*
86353629 CCGAAGGCATTCGTGCAAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
86353669 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
86353708 CCGAAGGCATT
1 CCGAAGGCATT
86353719 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 32 0.21
40 123 0.79
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:86361464 original size:40 final size:40
Alignment explanation
Indices: 86361381--86361603 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
86361371 TTGAATGCTG
* * * * * *
86361381 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
86361421 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
86361461 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
86361501 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
86361541 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
86361580 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
86361604 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 119 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:86361623 original size:79 final size:80
Alignment explanation
Indices: 86361456--86361638 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
86361446 GTGCGAGATA
** * *
86361456 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
86361521 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * *
86361536 TTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
86361600 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
86361615 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
86361639 TACGTGATTT
Statistics
Matches: 88, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 15 0.17
79 45 0.51
80 28 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:86363059 original size:18 final size:18
Alignment explanation
Indices: 86363036--86363072 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
86363026 GGCGACTCCC
*
86363036 ATTTTTCATTTTGAAATA
1 ATTTTTCATTTTAAAATA
86363054 ATTTTTCATTTTAAAATA
1 ATTTTTCATTTTAAAATA
86363072 A
1 A
86363073 AAAGTAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTTCATTTTAAAATA
Found at i:86363979 original size:29 final size:29
Alignment explanation
Indices: 86363923--86363979 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
86363913 TAAATGGCTA
*
86363923 GCCCGTGTGGCTCCACATAGCTGGCACAC
1 GCCCGTGTGGCTCCACATAGCTGACACAC
* *
86363952 GCCCGTGTGTCT-CACATGGCCTGACACA
1 GCCCGTGTGGCTCCACATAG-CTGACACA
86363980 TGCGTGTGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.18, C:0.37, G:0.26, T:0.19
Consensus pattern (29 bp):
GCCCGTGTGGCTCCACATAGCTGACACAC
Found at i:86364552 original size:21 final size:20
Alignment explanation
Indices: 86364520--86364559 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
86364510 GGTGACCGAT
* *
86364520 AAAAAAATAAAAGAGAAATA
1 AAAAAAAAAAAAAAGAAATA
86364540 AAAAAACAAAAAAAAGAAAT
1 AAAAAA-AAAAAAAAGAAAT
86364560 TGAGGAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.82, C:0.03, G:0.07, T:0.07
Consensus pattern (20 bp):
AAAAAAAAAAAAAAGAAATA
Found at i:86372062 original size:21 final size:21
Alignment explanation
Indices: 86372030--86372070 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
86372020 AGGCTCGAGG
86372030 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
86372051 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
86372071 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:86391367 original size:3 final size:3
Alignment explanation
Indices: 86391359--86391387 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
86391349 GTATTGTACT
86391359 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
86391388 TATCAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:86392061 original size:20 final size:21
Alignment explanation
Indices: 86392047--86392122 Score: 68
Period size: 22 Copynumber: 3.6 Consensus size: 21
86392037 AAAAAATCAT
86392047 AATATATATATAAAATCTAAAA
1 AATATATATA-AAAATCTAAAA
86392069 AATATATAT--AAAT-TATAAA
1 AATATATATAAAAATCTA-AAA
* * *
86392088 AATATAAAAATAAAATTTAAAA
1 AATATATATA-AAAATCTAAAA
*
86392110 AATATATCTAAAA
1 AATATATATAAAA
86392123 GAAATTAGTT
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
18 2 0.05
19 14 0.32
21 3 0.07
22 23 0.52
23 2 0.05
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (21 bp):
AATATATATAAAAATCTAAAA
Found at i:86392067 original size:28 final size:28
Alignment explanation
Indices: 86392031--86392097 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
86392021 AAATAGAAGT
*
86392031 AAATATAAAAAATCATA-ATATA-TATATA
1 AAATATAAAAAAT-ATATATAAATTATA-A
*
86392059 AAATCTAAAAAATATATATAAATTATAA
1 AAATATAAAAAATATATATAAATTATAA
86392087 AAATATAAAAA
1 AAATATAAAAA
86392098 TAAAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
27 3 0.09
28 27 0.79
29 4 0.12
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (28 bp):
AAATATAAAAAATATATATAAATTATAA
Found at i:86392075 original size:22 final size:21
Alignment explanation
Indices: 86392047--86392116 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 21
86392037 AAAAAATCAT
86392047 AATATATATATAAAATCT-AAA
1 AATATATATATAAAAT-TAAAA
86392068 AA-ATATATAT-AAATTATAAA
1 AATATATATATAAAATTA-AAA
* *
86392088 AATATAAAAATAAAATTTAAAA
1 AATATATATATAAAA-TTAAAA
86392110 AATATAT
1 AATATAT
86392117 CTAAAAGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
18 1 0.02
19 4 0.10
20 13 0.32
21 8 0.20
22 12 0.29
23 3 0.07
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.33
Consensus pattern (21 bp):
AATATATATATAAAATTAAAA
Found at i:86392085 original size:9 final size:10
Alignment explanation
Indices: 86392033--86392097 Score: 50
Period size: 9 Copynumber: 6.8 Consensus size: 10
86392023 ATAGAAGTAA
86392033 ATATAAAAA-
1 ATATAAAAAT
*
86392042 ATCAT-AATAT
1 AT-ATAAAAAT
86392052 ATATATAAAAT
1 ATATA-AAAAT
*
86392063 CTA-AAAAAT
1 ATATAAAAAT
*
86392072 ATATATAAAT
1 ATATAAAAAT
86392082 -TATAAAAAT
1 ATATAAAAAT
86392091 ATA-AAAA
1 ATATAAAA
86392098 TAAAATTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
9 26 0.59
10 12 0.27
11 6 0.14
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (10 bp):
ATATAAAAAT
Found at i:86392098 original size:27 final size:29
Alignment explanation
Indices: 86392031--86392099 Score: 74
Period size: 29 Copynumber: 2.4 Consensus size: 29
86392021 AAATAGAAGT
*
86392031 AAATATAAAAA-ATCATAATATATATATA
1 AAATATAAAAATATCATAAAATATATATA
*
86392059 AAATCTAAAAAATAT-ATATAAAT-TATA-A
1 AAATAT-AAAAATATCATA-AAATATATATA
86392087 AAATATAAAAATA
1 AAATATAAAAATA
86392100 AAATTTAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
27 7 0.20
28 11 0.31
29 12 0.34
30 5 0.14
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (29 bp):
AAATATAAAAATATCATAAAATATATATA
Found at i:86392184 original size:23 final size:21
Alignment explanation
Indices: 86392151--86392197 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 21
86392141 TAATATTACT
86392151 AAAAAAATGTACAA-AAATTATA
1 AAAAAAATGTA-AATAAATT-TA
86392173 AAAAAAATTGTAAATAAATTTA
1 AAAAAAA-TGTAAATAAATTTA
86392195 AAA
1 AAA
86392198 TTTTTTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.68, C:0.02, G:0.04, T:0.26
Consensus pattern (21 bp):
AAAAAAATGTAAATAAATTTA
Found at i:86393116 original size:12 final size:12
Alignment explanation
Indices: 86393099--86393123 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86393089 ACACATAAAT
86393099 TTTAATTTAATA
1 TTTAATTTAATA
86393111 TTTAATTTAATA
1 TTTAATTTAATA
86393123 T
1 T
86393124 ATGTATATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTAATTTAATA
Found at i:86402747 original size:21 final size:21
Alignment explanation
Indices: 86402723--86402769 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
86402713 AGGCATACAG
*
86402723 CCGTGT-GACTAAGGCACATGC
1 CCGTGTAGACT-AGGCACATGA
* *
86402744 CCGTATAGACTAGGGACATGA
1 CCGTGTAGACTAGGCACATGA
86402765 CCGTG
1 CCGTG
86402770 GGAACAGGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.26, C:0.26, G:0.30, T:0.19
Consensus pattern (21 bp):
CCGTGTAGACTAGGCACATGA
Found at i:86403467 original size:17 final size:18
Alignment explanation
Indices: 86403433--86403485 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 18
86403423 AAAAGAAAAG
86403433 AAATAATAAAT-A-AATA
1 AAATAATAAATAATAATA
*
86403449 AAATCA-AAATAATAAT-
1 AAATAATAAATAATAATA
*
86403465 AAATAATAAATAATTATA
1 AAATAATAAATAATAATA
86403483 AAA
1 AAA
86403486 ATTAACTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
15 4 0.13
16 11 0.37
17 12 0.40
18 3 0.10
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAATAAATAATAATA
Found at i:86406578 original size:8 final size:8
Alignment explanation
Indices: 86406567--86406636 Score: 52
Period size: 8 Copynumber: 8.2 Consensus size: 8
86406557 AAAAATTATT
86406567 ATATATAA
1 ATATATAA
86406575 ATATATAA
1 ATATATAA
86406583 AT-TCATAA
1 ATAT-ATAA
*
86406591 ATAACTAAAA
1 AT-A-TATAA
*
86406601 ATTTATAA
1 ATATATAA
*
86406609 ATTTATAAA
1 ATATAT-AA
*
86406618 ATATTTAA
1 ATATATAA
86406626 ATATATGAA
1 ATATAT-AA
86406635 AT
1 AT
86406637 CACTAAAAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
7 1 0.02
8 33 0.66
9 10 0.20
10 5 0.10
11 1 0.02
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (8 bp):
ATATATAA
Found at i:86406933 original size:26 final size:26
Alignment explanation
Indices: 86406904--86406990 Score: 77
Period size: 26 Copynumber: 3.2 Consensus size: 26
86406894 TAATTATGTA
86406904 TATTTAAAGAAATAAATACATCGATT
1 TATTTAAAGAAATAAATACATCGATT
** * * *
86406930 TATTTCTTATATTAGATAAATATAAT-TATT
1 TA--T-TTA-AAGAAATAAATA-CATCGATT
86406960 TATTTAAAGAAATAAATACATCGATT
1 TATTTAAAGAAATAAATACATCGATT
86406986 TATTT
1 TATTT
86406991 CTATGTGAAC
Statistics
Matches: 45, Mismatches: 10, Indels: 12
0.67 0.15 0.18
Matches are distributed among these distances:
25 2 0.04
26 19 0.42
27 3 0.07
28 2 0.04
29 3 0.07
30 14 0.31
31 2 0.04
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (26 bp):
TATTTAAAGAAATAAATACATCGATT
Found at i:86407005 original size:56 final size:58
Alignment explanation
Indices: 86406894--86407005 Score: 167
Period size: 56 Copynumber: 2.0 Consensus size: 58
86406884 TATTTTGATT
* *
86406894 TAATTATGTATATTTAAAGAAATAAATACATCGATTTATTTCTTATATTAGATAAATA
1 TAATTATGTATATTTAAAGAAATAAATACATCGATTTATTTCTTATATAACATAAATA
*
86406952 TAATTAT-T-TATTTAAAGAAATAAATACATCGATTTATTTC-TATGTGAACATAAA
1 TAATTATGTATATTTAAAGAAATAAATACATCGATTTATTTCTTATAT-AACATAAA
86407006 ATAGTGTTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
55 4 0.08
56 38 0.76
57 1 0.02
58 7 0.14
ACGTcount: A:0.45, C:0.06, G:0.07, T:0.42
Consensus pattern (58 bp):
TAATTATGTATATTTAAAGAAATAAATACATCGATTTATTTCTTATATAACATAAATA
Found at i:86409200 original size:23 final size:22
Alignment explanation
Indices: 86409164--86409206 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 22
86409154 GATTTAAAAA
86409164 CAATTTTTTATAAAT-AAATAT
1 CAATTTTTTATAAATCAAATAT
86409185 CAATTCTTTTATTAAATCAAAT
1 CAATT-TTTTA-TAAATCAAAT
86409207 TATAAATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 5 0.26
23 5 0.26
24 4 0.21
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (22 bp):
CAATTTTTTATAAATCAAATAT
Found at i:86416387 original size:2 final size:2
Alignment explanation
Indices: 86416380--86416415 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
86416370 TGCTGCACCA
86416380 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
86416416 ACCATTGGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:86419101 original size:20 final size:20
Alignment explanation
Indices: 86419059--86419116 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
86419049 TATTTTTATG
86419059 AAAATCATAAAAA-TTATAAA
1 AAAATCATAAAAACTTAT-AA
* *
86419079 AAAATTGATATAAACTTATAA
1 AAAA-TCATAAAAACTTATAA
86419100 AAAATCATAAAAACTTA
1 AAAATCATAAAAACTTA
86419117 AATTGGACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 15 0.47
21 13 0.41
22 4 0.12
ACGTcount: A:0.64, C:0.07, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAATCATAAAAACTTATAA
Found at i:86419641 original size:19 final size:20
Alignment explanation
Indices: 86419610--86419661 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
86419600 TACATATTTT
86419610 TCAATTTTAAATAAGTTT-TA
1 TCAATTTT-AATAAGTTTATA
*
86419630 TTAATTTTAATAAGTTTATA
1 TCAATTTTAATAAGTTTATA
*
86419650 TCAAATTTAATA
1 TCAATTTTAATA
86419662 TATTTTTATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 9 0.32
20 19 0.68
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (20 bp):
TCAATTTTAATAAGTTTATA
Found at i:86419680 original size:15 final size:15
Alignment explanation
Indices: 86419660--86419702 Score: 50
Period size: 17 Copynumber: 2.7 Consensus size: 15
86419650 TCAAATTTAA
86419660 TATATTTTTATATTT
1 TATATTTTTATATTT
86419675 TATATTTTTTTATATTT
1 TATA--TTTTTATATTT
* *
86419692 AATATTCTTAT
1 TATATTTTTAT
86419703 TTTATTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 10 0.42
17 14 0.58
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (15 bp):
TATATTTTTATATTT
Found at i:86419697 original size:17 final size:17
Alignment explanation
Indices: 86419654--86419697 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
86419644 TTTATATCAA
*
86419654 ATTTAATATATTTTTAT
1 ATTTAATATTTTTTTAT
*
86419671 ATTTTATATTTTTTTAT
1 ATTTAATATTTTTTTAT
86419688 ATTTAATATT
1 ATTTAATATT
86419698 CTTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTAATATTTTTTTAT
Found at i:86427987 original size:11 final size:11
Alignment explanation
Indices: 86427973--86427997 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
86427963 TCTTTATATA
86427973 TTTTTTAGAAT
1 TTTTTTAGAAT
86427984 TTTTTTAGAAT
1 TTTTTTAGAAT
86427995 TTT
1 TTT
86427998 ATGATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (11 bp):
TTTTTTAGAAT
Found at i:86428043 original size:18 final size:18
Alignment explanation
Indices: 86428020--86428069 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
86428010 TAAAAAATCT
86428020 ATTATTCGAATTATTAGA
1 ATTATTCGAATTATTAGA
*
86428038 ATTATTC-AAGTTATTTGA
1 ATTATTCGAA-TTATTAGA
* *
86428056 GTTATTTGAATTAT
1 ATTATTCGAATTAT
86428070 AAAATTCAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.34, C:0.04, G:0.12, T:0.50
Consensus pattern (18 bp):
ATTATTCGAATTATTAGA
Found at i:86439356 original size:23 final size:23
Alignment explanation
Indices: 86439330--86439382 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
86439320 TGGGTTGAGT
86439330 ATATAAATATAAAAAAAGTAATA
1 ATATAAATATAAAAAAAGTAATA
*
86439353 ATATAAATATAAAAAAATTAATA
1 ATATAAATATAAAAAAAGTAATA
*
86439376 ATCTAAA
1 ATATAAA
86439383 CAACATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.28
Consensus pattern (23 bp):
ATATAAATATAAAAAAAGTAATA
Found at i:86439584 original size:7 final size:7
Alignment explanation
Indices: 86439574--86439614 Score: 73
Period size: 7 Copynumber: 5.9 Consensus size: 7
86439564 TTAAGGATTT
86439574 AAAATTC
1 AAAATTC
86439581 AAAATTC
1 AAAATTC
86439588 AAAATTC
1 AAAATTC
*
86439595 AAAATTT
1 AAAATTC
86439602 AAAATTC
1 AAAATTC
86439609 AAAATT
1 AAAATT
86439615 TGAAGATTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.32
Consensus pattern (7 bp):
AAAATTC
Found at i:86439615 original size:14 final size:14
Alignment explanation
Indices: 86439570--86439615 Score: 83
Period size: 14 Copynumber: 3.3 Consensus size: 14
86439560 TTGATTAAGG
86439570 ATTTAAAATTCAAA
1 ATTTAAAATTCAAA
*
86439584 ATTCAAAATTCAAA
1 ATTTAAAATTCAAA
86439598 ATTTAAAATTCAAA
1 ATTTAAAATTCAAA
86439612 ATTT
1 ATTT
86439616 GAAGATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (14 bp):
ATTTAAAATTCAAA
Found at i:86439624 original size:7 final size:7
Alignment explanation
Indices: 86439614--86439643 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
86439604 AATTCAAAAT
86439614 TTGAAGA
1 TTGAAGA
86439621 TTGAAGA
1 TTGAAGA
86439628 TTGAAGA
1 TTGAAGA
*
86439635 TTGAGGA
1 TTGAAGA
86439642 TT
1 TT
86439644 AAAAATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (7 bp):
TTGAAGA
Found at i:86439655 original size:14 final size:14
Alignment explanation
Indices: 86439638--86439666 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
86439628 TTGAAGATTG
86439638 AGGATTAAAAATTT
1 AGGATTAAAAATTT
86439652 AGGATTAAAAATTT
1 AGGATTAAAAATTT
86439666 A
1 A
86439667 AAAATGAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.14, T:0.34
Consensus pattern (14 bp):
AGGATTAAAAATTT
Found at i:86441222 original size:18 final size:18
Alignment explanation
Indices: 86441199--86441239 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
86441189 AAAAAATTAT
*
86441199 TAAAATTTAAATATTTGA
1 TAAAATTTAAAAATTTGA
*
86441217 TAAAATTTAAAAATTTTA
1 TAAAATTTAAAAATTTGA
86441235 TAAAA
1 TAAAA
86441240 ATCAGAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.41
Consensus pattern (18 bp):
TAAAATTTAAAAATTTGA
Found at i:86441659 original size:13 final size:13
Alignment explanation
Indices: 86441641--86441667 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86441631 TATTTTTAAA
86441641 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
86441654 ATTTTTAAAAAAT
1 ATTTTTAAAAAAT
86441667 A
1 A
86441668 ACTTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTTTTAAAAAAT
Found at i:86441673 original size:14 final size:13
Alignment explanation
Indices: 86441643--86441676 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
86441633 TTTTTAAAAT
*
86441643 TTTTAAAAAATAT
1 TTTTAAAAAATAC
86441656 TTTTAAAAAATAAC
1 TTTTAAAAAAT-AC
86441670 TTTTAAA
1 TTTTAAA
86441677 TAATTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTTAAAAAATAC
Found at i:86443057 original size:17 final size:18
Alignment explanation
Indices: 86443022--86443063 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
86443012 AAATATTTTT
86443022 TTAAAAATTAATAGTAAA
1 TTAAAAATTAATAGTAAA
*
86443040 -TAAAAATTAA-ATTAAAA
1 TTAAAAATTAATAGT-AAA
86443057 TTAAAAA
1 TTAAAAA
86443064 AAGCATAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.10
17 13 0.62
18 6 0.29
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
TTAAAAATTAATAGTAAA
Found at i:86453280 original size:22 final size:22
Alignment explanation
Indices: 86453252--86453373 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
86453242 TTCCACATCC
86453252 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
86453274 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
86453298 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
86453321 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
86453345 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
86453368 ATCACA
1 ATCACA
86453374 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:86453287 original size:47 final size:47
Alignment explanation
Indices: 86453224--86453869 Score: 915
Period size: 47 Copynumber: 13.6 Consensus size: 47
86453214 CCCTTCGGGA
* * *
86453224 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86453271 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86453318 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
86453365 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
86453412 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * *
86453459 CTTATCTCAGATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
86453506 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
*
86453553 CTTATCACATATATATACACTTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86453602 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86453649 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
86453698 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
86453745 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
86453792 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
86453843 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
86453870 TATTCAAATA
Statistics
Matches: 563, Mismatches: 26, Indels: 20
0.92 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 426 0.76
49 89 0.16
50 1 0.00
51 46 0.08
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:86455263 original size:85 final size:85
Alignment explanation
Indices: 86455134--86455312 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
86455124 TATTTTATTG
*
86455134 CCCATGCCCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
86455199 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
86455219 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
86455284 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
86455304 CCCATGCTC
1 CCCATGCTC
86455313 ATGGCCGGCC
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.26, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:86456681 original size:46 final size:46
Alignment explanation
Indices: 86456621--86456712 Score: 166
Period size: 46 Copynumber: 2.0 Consensus size: 46
86456611 AAAGAGAATA
*
86456621 TTACTTGGGATTTCTTCCAATTAGAGTTTAGGAAGAAATATATTAG
1 TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
*
86456667 TTACTTTGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
1 TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
86456713 CCAATGGTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (46 bp):
TTACTTGGGATTTCTTCCAATCAGAGTTTAGGAAGAAATATATTAG
Found at i:86460437 original size:25 final size:25
Alignment explanation
Indices: 86460409--86460459 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
86460399 TAGAGTATTT
86460409 TTGAAAGTATCTCCATGGAAAAAGG
1 TTGAAAGTATCTCCATGGAAAAAGG
*
86460434 TTGAAATTATCTCCATGGAAAAAGG
1 TTGAAAGTATCTCCATGGAAAAAGG
86460459 T
1 T
86460460 ATTAAGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (25 bp):
TTGAAAGTATCTCCATGGAAAAAGG
Found at i:86465233 original size:23 final size:23
Alignment explanation
Indices: 86465212--86465253 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
86465202 AATAATTAAG
86465212 AATAATTA-AA-TAAAATATTTA
1 AATAATTAGAATTAAAATATTTA
86465233 AATAATTAGAATTAAAA-ATTT
1 AATAATTAGAATTAAAATATTT
86465254 TAGGTTAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 6 0.32
23 5 0.26
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
AATAATTAGAATTAAAATATTTA
Found at i:86465238 original size:21 final size:22
Alignment explanation
Indices: 86465197--86465253 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
86465187 TAGATTAGAT
*
86465197 AATTAAATAATTAAGAATAATTA-
1 AATTAAA-AATTTA-AATAATTAG
86465220 AA-TAAAATATTTAAATAATTAG
1 AATTAAAA-ATTTAAATAATTAG
86465242 AATTAAAAATTT
1 AATTAAAAATTT
86465254 TAGGTTAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
21 9 0.30
22 14 0.47
23 7 0.23
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (22 bp):
AATTAAAAATTTAAATAATTAG
Found at i:86478138 original size:70 final size:70
Alignment explanation
Indices: 86478025--86478165 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
86478015 TATCATAGAT
86478025 AGAATTAAATCCAAACTCTCTTTGTGGAAGGCTAAGTTACTTGGACAAGGTGGAAAACTTACCTT
1 AGAATTAAATCCAAACTCTCTTTGTGGAAGGCTAAGTTACTTGGACAAGGTGGAAAACTTACCTT
86478090 GATTA
66 GATTA
86478095 AGAATTAAATCCAAACTCTCTTTGTGGAAGGCTAAGTTACTTGGACAAGGTGGAAAACTTACCTT
1 AGAATTAAATCCAAACTCTCTTTGTGGAAGGCTAAGTTACTTGGACAAGGTGGAAAACTTACCTT
86478160 GATTA
66 GATTA
86478165 A
1 A
86478166 AGCAGTATTG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.30
Consensus pattern (70 bp):
AGAATTAAATCCAAACTCTCTTTGTGGAAGGCTAAGTTACTTGGACAAGGTGGAAAACTTACCTT
GATTA
Found at i:86481210 original size:6 final size:6
Alignment explanation
Indices: 86481199--86481239 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
86481189 AACTTAGGTA
86481199 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
1 ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTTC ATTTT
86481240 GATTGGATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (6 bp):
ATTTTC
Found at i:86487743 original size:18 final size:16
Alignment explanation
Indices: 86487707--86487780 Score: 69
Period size: 17 Copynumber: 4.5 Consensus size: 16
86487697 GGCATGTAAA
* *
86487707 AAAAATT-AAAATTTT
1 AAAAATTAAAAAATAT
*
86487722 AAAATTTAAAGAAATAT
1 AAAAATTAAA-AAATAT
86487739 AAAAATTAAAAAATAT
1 AAAAATTAAAAAATAT
* *
86487755 AAAAAGTTATAATATTAT
1 AAAAA-TTA-AAAAATAT
86487773 AAAAATTA
1 AAAAATTA
86487781 TTTAAAAATT
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
15 6 0.12
16 13 0.27
17 19 0.39
18 11 0.22
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
AAAAATTAAAAAATAT
Found at i:86488414 original size:18 final size:18
Alignment explanation
Indices: 86488391--86488430 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
86488381 TATAAGGGTA
*
86488391 AAGGTTGCTTTAATACTT
1 AAGGTTGCTTCAATACTT
86488409 AAGGTTGCTTCAATACTT
1 AAGGTTGCTTCAATACTT
86488427 AAGG
1 AAGG
86488431 CACTTAAGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (18 bp):
AAGGTTGCTTCAATACTT
Found at i:86494351 original size:25 final size:25
Alignment explanation
Indices: 86494295--86494358 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
86494285 AACATTAATT
**
86494295 AAAAATAAAAAAAGCTTTTTATTCAA
1 AAAAATAAAAAAAGC-TTTTAAACAA
86494321 AAAAATAAAAAAAGC-TTTAAACAA
1 AAAAATAAAAAAAGCTTTTAAACAA
*
86494345 ATGAAATAAAAAAA
1 A-AAAATAAAAAAA
86494359 ATAAAAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.24
25 11 0.32
26 15 0.44
ACGTcount: A:0.67, C:0.06, G:0.05, T:0.22
Consensus pattern (25 bp):
AAAAATAAAAAAAGCTTTTAAACAA
Found at i:86497206 original size:21 final size:23
Alignment explanation
Indices: 86497182--86497229 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 23
86497172 AAAATAATGC
86497182 TAAAAATAA-AAAAAAAT-AGAG
1 TAAAAATAATAAAAAAATCAGAG
* *
86497203 TAAAAATAATATAAAAATCAGAT
1 TAAAAATAATAAAAAAATCAGAG
86497226 TAAA
1 TAAA
86497230 TCTCAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 9 0.39
22 7 0.30
23 7 0.30
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.21
Consensus pattern (23 bp):
TAAAAATAATAAAAAAATCAGAG
Found at i:86503258 original size:15 final size:15
Alignment explanation
Indices: 86503226--86503256 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
86503216 TTTAGTAATT
86503226 AATTTAATTTATTAA
1 AATTTAATTTATTAA
86503241 AATTTAATTT-TTAA
1 AATTTAATTTATTAA
86503255 AA
1 AA
86503257 ATGGGACTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
AATTTAATTTATTAA
Found at i:86522713 original size:23 final size:22
Alignment explanation
Indices: 86522678--86522727 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
86522668 CACTTGAAAC
* *
86522678 TTTTAAAAATATAATTTATTTAT
1 TTTTAAAAATAT-ATATATTAAT
* *
86522701 TTTTTAAATTATATATATTAAT
1 TTTTAAAAATATATATATTAAT
86522723 TTTTA
1 TTTTA
86522728 GGAGATGACA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTTAAAAATATATATATTAAT
Found at i:86525109 original size:19 final size:18
Alignment explanation
Indices: 86525081--86525118 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
86525071 GGCCATTTTT
86525081 GGGTTGTGTGGGCCACAC
1 GGGTTGTGTGGGCCACAC
*
86525099 GGGTGTGTGTGGGCTACAC
1 GGGT-TGTGTGGGCCACAC
86525118 G
1 G
86525119 AGCATGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.11, C:0.18, G:0.47, T:0.24
Consensus pattern (18 bp):
GGGTTGTGTGGGCCACAC
Found at i:86526333 original size:10 final size:10
Alignment explanation
Indices: 86526292--86526333 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
86526282 AAGGTTAGAT
86526292 TTTATTTTTA
1 TTTATTTTTA
*
86526302 TTT-GTTTTA
1 TTTATTTTTA
*
86526311 CTTATTTTTA
1 TTTATTTTTA
86526321 TTTATTTTTA
1 TTTATTTTTA
86526331 TTT
1 TTT
86526334 TTGTGATATG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 7 0.26
10 20 0.74
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:86527542 original size:41 final size:41
Alignment explanation
Indices: 86527479--86527557 Score: 131
Period size: 41 Copynumber: 1.9 Consensus size: 41
86527469 AGATTTTTTT
* * *
86527479 ATTGTTACTTGAGGTTAGTATGCCATTGATTTTGAATCTTG
1 ATTGGTACTTGAGGTTACTATGCCATTGATTCTGAATCTTG
86527520 ATTGGTACTTGAGGTTACTATGCCATTGATTCTGAATC
1 ATTGGTACTTGAGGTTACTATGCCATTGATTCTGAATC
86527558 CGAGTAAATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.23, C:0.13, G:0.22, T:0.43
Consensus pattern (41 bp):
ATTGGTACTTGAGGTTACTATGCCATTGATTCTGAATCTTG
Found at i:86528862 original size:19 final size:19
Alignment explanation
Indices: 86528836--86528888 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
86528826 TTTTAAATTA
86528836 ATTTTAACTTGATTGAAA-
1 ATTTTAACTTGATTGAAAC
**
86528854 ATGTTTAACTCAATTGAAACC
1 AT-TTTAACTTGATTGAAA-C
86528875 ATTTTAACTTGATT
1 ATTTTAACTTGATT
86528889 TTATCATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 2 0.07
19 14 0.50
20 10 0.36
21 2 0.07
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.43
Consensus pattern (19 bp):
ATTTTAACTTGATTGAAAC
Done.