Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 271 of 295
Found at i:86540462 original size:23 final size:22
Alignment explanation
Indices: 86540436--86540487 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
86540426 ATAAAAGAAT
*
86540436 TAAATACTTTTAAATAATTTATA
1 TAAATACTTTTAAA-AATTTAAA
* *
86540459 TAAATTATTTTTAAAATTTTAAA
1 TAAA-TACTTTTAAAAATTTAAA
86540482 TAAATA
1 TAAATA
86540488 TCAAAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 14 0.56
24 9 0.36
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAATACTTTTAAAAATTTAAA
Found at i:86540503 original size:32 final size:32
Alignment explanation
Indices: 86540443--86540503 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
86540433 AATTAAATAC
*
86540443 TTTTAAATAATTTATATAAATTATTTTTAAAA
1 TTTTAAATAATATATATAAATTATTTTTAAAA
86540475 TTTTAAATAA-ATATCA-AAATTATATTTTA
1 TTTTAAATAATATAT-ATAAATTAT-TTTTA
86540504 CTAAAGTGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 10 0.38
32 16 0.62
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (32 bp):
TTTTAAATAATATATATAAATTATTTTTAAAA
Found at i:86542481 original size:11 final size:11
Alignment explanation
Indices: 86542465--86542502 Score: 53
Period size: 10 Copynumber: 3.6 Consensus size: 11
86542455 TCATGCTTAT
86542465 AATCATACCAA
1 AATCATACCAA
*
86542476 AATCATGCC-A
1 AATCATACCAA
86542486 AATCATACCAA
1 AATCATACCAA
86542497 AA-CATA
1 AATCATA
86542503 TGATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 13 0.54
11 11 0.46
ACGTcount: A:0.53, C:0.26, G:0.03, T:0.18
Consensus pattern (11 bp):
AATCATACCAA
Found at i:86545680 original size:30 final size:30
Alignment explanation
Indices: 86545646--86545731 Score: 145
Period size: 30 Copynumber: 2.9 Consensus size: 30
86545636 AAAACCCTAG
86545646 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
86545676 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
* **
86545706 CCACCTTGTCTTGCACTTGCACCTAC
1 CCACCTTGCCTCCCACTTGCACCTAC
86545732 ACCATCAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.16, C:0.50, G:0.08, T:0.26
Consensus pattern (30 bp):
CCACCTTGCCTCCCACTTGCACCTACTCCA
Found at i:86546274 original size:18 final size:18
Alignment explanation
Indices: 86546236--86546318 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
86546226 TTTTATTTTT
*
86546236 TTATT-TTT-TATTTTTA
1 TTATTATTTATATTATTA
*
86546252 CTATTATTTATATTATTA
1 TTATTATTTATATTATTA
* *
86546270 TTATT-TCTCAT-GTATATA
1 TTATTAT-TTATATTAT-TA
86546288 TTATTATTTATATTATTA
1 TTATTATTTATATTATTA
86546306 TTA-TATTATATAT
1 TTATTATT-TATAT
86546319 ACCCTCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
16 4 0.08
17 11 0.21
18 34 0.64
19 4 0.08
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTATTATTTATATTATTA
Found at i:86546635 original size:3 final size:3
Alignment explanation
Indices: 86546627--86546651 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
86546617 ATTTCTATAT
86546627 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
86546652 ATAGTAGTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:86546666 original size:23 final size:23
Alignment explanation
Indices: 86546640--86546781 Score: 66
Period size: 23 Copynumber: 6.3 Consensus size: 23
86546630 TTATTATTAT
*
86546640 TATTATTATTATATAGTAGTGTG
1 TATTATTATTATATAGTAGTATG
* * *
86546663 TATT-TCTATTATGTACATA-TATA
1 TATTAT-TATTATATA-GTAGTATG
* * * *
86546686 TATTTTTATATATAGTATTATTATT
1 TATTATTAT-TATA-TAGTAGTATG
*
86546711 TATTATTATTATATAGTAGTGTG
1 TATTATTATTATATAGTAGTATG
* * *
86546734 T-TTTTCTATTATATA-CA-TATA
1 TATTAT-TATTATATAGTAGTATG
*
86546755 TA-TATTTTTATATA-TAGTAT-
1 TATTATTATTATATAGTAGTATG
86546775 TATTATT
1 TATTATT
86546782 TACTTTACTT
Statistics
Matches: 90, Mismatches: 19, Indels: 22
0.69 0.15 0.17
Matches are distributed among these distances:
20 11 0.12
21 12 0.13
22 5 0.06
23 37 0.41
24 12 0.13
25 13 0.14
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.57
Consensus pattern (23 bp):
TATTATTATTATATAGTAGTATG
Found at i:86546667 original size:71 final size:73
Alignment explanation
Indices: 86546616--86546783 Score: 240
Period size: 71 Copynumber: 2.4 Consensus size: 73
86546606 TTGCTTTTTG
* * *
86546616 TATTTCTATATTTATTATTATTA-TTATTATTATTATATAGTAGTGTGTATTTCTA-T-TATGTA
1 TATTTCTATATATAGTATTATTATTTATTATTATTATATAGTAGTGTGTATTTTTATTATATGTA
86546678 CATATATA
66 CATATATA
*
86546686 TATTTTTATATATAGTATTATTATTTATTATTATTATATAGTAGTGTGT-TTTTCTATTATA--T
1 TATTTCTATATATAGTATTATTATTTATTATTATTATATAGTAGTGTGTATTTT-TATTATATGT
86546748 ACATATATA
65 ACATATATA
*
86546757 TATTTTTATATATAGTATTATTATTTA
1 TATTTCTATATATAGTATTATTATTTA
86546784 CTTTACTTCA
Statistics
Matches: 90, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
70 23 0.26
71 64 0.71
72 1 0.01
73 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (73 bp):
TATTTCTATATATAGTATTATTATTTATTATTATTATATAGTAGTGTGTATTTTTATTATATGTA
CATATATA
Found at i:86551977 original size:59 final size:62
Alignment explanation
Indices: 86551861--86551977 Score: 168
Period size: 62 Copynumber: 1.9 Consensus size: 62
86551851 AGTGATTATC
* * * * *
86551861 TTAATATTAAATTTAATTTAATGTTTATGTTGTAGATAAATATTTTATTATTTTAATAAGAT
1 TTAATATTAAATTTAATCTAATATTTATGCTGTAGATAAATATTATATTAATTTAATAAGAT
86551923 TTAATATTAAATTTAATCTAATATTTAT-CT-T-GATAAATATTATATTAATTTAATA
1 TTAATATTAAATTTAATCTAATATTTATGCTGTAGATAAATATTATATTAATTTAATA
86551978 TTAAAGTGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.44
60 1 0.02
61 1 0.02
62 26 0.52
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (62 bp):
TTAATATTAAATTTAATCTAATATTTATGCTGTAGATAAATATTATATTAATTTAATAAGAT
Found at i:86555065 original size:22 final size:22
Alignment explanation
Indices: 86555037--86555080 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
86555027 GGAAGAATGG
86555037 CAAAGAAATATCAATAGACGAC
1 CAAAGAAATATCAATAGACGAC
86555059 CAAAGAAATATCAATAGACGAC
1 CAAAGAAATATCAATAGACGAC
86555081 AGAACAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.14, T:0.14
Consensus pattern (22 bp):
CAAAGAAATATCAATAGACGAC
Found at i:86561211 original size:19 final size:17
Alignment explanation
Indices: 86561185--86561223 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 17
86561175 TTTGATATTT
86561185 TATAATTATTTAATTAGA
1 TATAATTATTTAATTA-A
86561203 TATATATTATTTAATTAA
1 TATA-ATTATTTAATTAA
86561221 TAT
1 TAT
86561224 TTTAATAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TATAATTATTTAATTAA
Found at i:86563436 original size:46 final size:46
Alignment explanation
Indices: 86563384--86563500 Score: 207
Period size: 46 Copynumber: 2.5 Consensus size: 46
86563374 AGTGTTCTCT
86563384 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
86563430 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
86563476 GTGATATGAAATGAATAAGACCATG
1 CTGATATGAAATGTGTAAGACCATG
86563501 CAACGTGACA
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:86563508 original size:29 final size:29
Alignment explanation
Indices: 86563465--86563529 Score: 103
Period size: 29 Copynumber: 2.2 Consensus size: 29
86563455 GTTGAAAGAT
* *
86563465 ACCATGGCAACGTGATATGAAATGAATAAG
1 ACCAT-GCAACGTGACATGAAAAGAATAAG
86563495 ACCATGCAACGTGACATGAAAAGAATAAG
1 ACCATGCAACGTGACATGAAAAGAATAAG
86563524 ACCATG
1 ACCATG
86563530 GTTGAAAGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 28 0.85
30 5 0.15
ACGTcount: A:0.45, C:0.17, G:0.22, T:0.17
Consensus pattern (29 bp):
ACCATGCAACGTGACATGAAAAGAATAAG
Found at i:86563556 original size:46 final size:46
Alignment explanation
Indices: 86563495--86563617 Score: 135
Period size: 46 Copynumber: 2.7 Consensus size: 46
86563485 AATGAATAAG
* * *
86563495 ACCAT-GCAACGTGACATGAAAA-GAATAAGACCATGGTTGAAAGAT
1 ACCATGGCAACATGACA-GAAAATGAATAAGACCATAGTTGAAAGAC
*
86563540 ACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGAC
1 ACCATGGCAACATGACAGAAAATGAATAAGACCATAGTTGAAAGAC
* * * * *
86563586 ACTATGGCATCATGTCA-AATATAAATAAGACC
1 ACCATGGCAACATGACAGAAAATGAATAAGACC
86563618 GTAGATGGGA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
45 22 0.33
46 44 0.67
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.19
Consensus pattern (46 bp):
ACCATGGCAACATGACAGAAAATGAATAAGACCATAGTTGAAAGAC
Found at i:86563901 original size:16 final size:17
Alignment explanation
Indices: 86563880--86563912 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86563870 ATGATGGAGC
86563880 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
86563896 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
86563913 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:86574891 original size:23 final size:23
Alignment explanation
Indices: 86574825--86574891 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 23
86574815 TAATAAATTT
* *
86574825 ATAAACAAAATGTATAATAATATAA
1 ATAAA-AAAATGAATAAT-ATGTAA
* *
86574850 ATAATATAATGAATAATATGTAA
1 ATAAAAAAATGAATAATATGTAA
86574873 ATAAAAAAAT-AATATATAT
1 ATAAAAAAATGAATA-ATAT
86574892 ACTATTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
22 4 0.11
23 17 0.49
24 10 0.29
25 4 0.11
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.31
Consensus pattern (23 bp):
ATAAAAAAATGAATAATATGTAA
Found at i:86576172 original size:15 final size:16
Alignment explanation
Indices: 86576152--86576181 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86576142 TGTAAAGGAC
86576152 TTTTTA-TTATTTTTG
1 TTTTTATTTATTTTTG
86576167 TTTTTATTTATTTTT
1 TTTTTATTTATTTTT
86576182 CTGTTTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTTATTTATTTTTG
Found at i:86576178 original size:19 final size:18
Alignment explanation
Indices: 86576152--86576189 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
86576142 TGTAAAGGAC
86576152 TTTTTA-TTA-TTTT-TG
1 TTTTTATTTATTTTTCTG
86576167 TTTTTATTTATTTTTCTG
1 TTTTTATTTATTTTTCTG
86576185 TTTTT
1 TTTTT
86576190 TCTGGGTGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 6 0.30
16 3 0.15
17 4 0.20
18 7 0.35
ACGTcount: A:0.11, C:0.03, G:0.05, T:0.82
Consensus pattern (18 bp):
TTTTTATTTATTTTTCTG
Found at i:86584553 original size:42 final size:42
Alignment explanation
Indices: 86584506--86584586 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
86584496 TTATAAATGA
* *
86584506 AATTAATAAACTAAGCAAACATAAATTAATAGTCAAACACCC
1 AATTAATAAACTAAACAAACATAAATAAATAGTCAAACACCC
***
86584548 AATTAATAAACTAAACCCGCATAAATAAATAGTCAAACA
1 AATTAATAAACTAAACAAACATAAATAAATAGTCAAACA
86584587 TCATAAAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.56, C:0.19, G:0.05, T:0.21
Consensus pattern (42 bp):
AATTAATAAACTAAACAAACATAAATAAATAGTCAAACACCC
Found at i:86584919 original size:21 final size:21
Alignment explanation
Indices: 86584895--86584935 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
86584885 ACTTAAATTG
86584895 TCAA-TTGCACTACATAATTTA
1 TCAATTTG-ACTACATAATTTA
*
86584916 TCAATTTGACTATATAATTT
1 TCAATTTGACTACATAATTT
86584936 TGCAACTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.44
Consensus pattern (21 bp):
TCAATTTGACTACATAATTTA
Found at i:86590653 original size:46 final size:45
Alignment explanation
Indices: 86590559--86590644 Score: 129
Period size: 46 Copynumber: 1.9 Consensus size: 45
86590549 TACATTTCAC
* *
86590559 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
*
86590605 GAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAACCAT
1 GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
86590645 CCTAGTGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 9 0.24
46 28 0.76
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:86607191 original size:27 final size:27
Alignment explanation
Indices: 86607161--86607338 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
86607151 ATATTGAGTC
* * *
86607161 CGCACACTCAGTGTTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
86607188 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
86607215 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*** ** *
86607243 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
*
86607270 CGCACACTTAGTGC-ATCATATTC-ACTT
1 CGCACACTTAGTGCTA-CATAATCAAC-T
* * *
86607297 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
86607324 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86607339 GTACAATTTA
Statistics
Matches: 125, Mismatches: 21, Indels: 10
0.80 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.80
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:86607302 original size:82 final size:81
Alignment explanation
Indices: 86607182--86607337 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86607172 TGTTATATAA
* *
86607182 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86607247 CACTTAGTGCCGTATGG
65 CACTTAGTGCCGTATGG
* * **
86607264 TCAATTCGCACACTTAGTGC-ATCATATTCACTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86607328 CACTTAGTGC
65 CACTTAGTGC
86607338 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGTATGG
Found at i:86617131 original size:26 final size:26
Alignment explanation
Indices: 86617099--86617152 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
86617089 AGTTGTCTCA
*
86617099 CATGCCAGCAAGTAAAGGCAAAACAT
1 CATGCCAACAAGTAAAGGCAAAACAT
* * *
86617125 CATGCCAATAAGTGAAGGCAGAACAT
1 CATGCCAACAAGTAAAGGCAAAACAT
86617151 CA
1 CA
86617153 AGTTCCCTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.22, G:0.20, T:0.13
Consensus pattern (26 bp):
CATGCCAACAAGTAAAGGCAAAACAT
Found at i:86623414 original size:30 final size:29
Alignment explanation
Indices: 86623380--86623464 Score: 109
Period size: 30 Copynumber: 2.8 Consensus size: 29
86623370 AAACATTTTT
86623380 ACTTTTCCCTCAAAACTTTTACTCCTTCCC
1 ACTTTTCCC-CAAAACTTTTACTCCTTCCC
*
86623410 AC-TTTCTCCCAAAACTTTTTACTCATTCCC
1 ACTTTTC-CCCAAAAC-TTTTACTCCTTCCC
*
86623440 ACTTTCTCCCAAAAACTTTTACTCC
1 ACTTT-TCCCCAAAACTTTTACTCC
86623465 CCTTCCATCC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
29 10 0.21
30 27 0.56
31 9 0.19
32 2 0.04
ACGTcount: A:0.24, C:0.38, G:0.00, T:0.39
Consensus pattern (29 bp):
ACTTTTCCCCAAAACTTTTACTCCTTCCC
Found at i:86626962 original size:40 final size:40
Alignment explanation
Indices: 86626902--86627121 Score: 221
Period size: 40 Copynumber: 5.5 Consensus size: 40
86626892 TATTCGAATG
** * *
86626902 ATATCCGGGCTAAGTCCCGAAGGCTTTTACGCTAGTGACT
1 ATATCCGGGCTAAAACCCGAAGGCATTTATGCTAGTGACT
* * * *
86626942 ATATCCGGACTAAAATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAAACCCGAAGGCATTTATGCTAG-TGACT
* * *
86626982 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAAACCCGAAGGCATTTATGCTAGTGACT
** *
86627022 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAAACCCGAAGGCATTTATGCTAGTGACT
* * * * **
86627062 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCGAGTGGTT
1 ATATCCGGGCTAAAACCCGAAGGCATTTATGCTAGTGACT
*
86627101 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAAACCCGAAG
86627122 ATACTTGGGT
Statistics
Matches: 152, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
38 13 0.09
39 16 0.11
40 121 0.80
41 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTATGCTAGTGACT
Found at i:86627042 original size:80 final size:79
Alignment explanation
Indices: 86626902--86627121 Score: 268
Period size: 80 Copynumber: 2.8 Consensus size: 79
86626892 TATTCGAATG
* *
86626902 ATATCCGGGCTAAGTCCCGAAGGCTTT-TACGCTAGTGACTATATCCGGACTAAAAT-CCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGT--GCTAGTGACTATATCCGGGCT-AAATCCCGAAGG
* *
86626965 CATTTGTGCGAGTTG-CT
63 CATTTATGCGAG-TGACC
* *
86626982 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCA
*
86627047 TTTATGCTAGTGACC
65 TTTATGCGAGTGACC
* * **
86627062 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCGAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAG
86627122 ATACTTGGGT
Statistics
Matches: 123, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 14 0.11
79 21 0.17
80 84 0.68
81 3 0.02
82 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAATCCCGAAGGCAT
TTATGCGAGTGACC
Found at i:86635200 original size:324 final size:324
Alignment explanation
Indices: 86634611--86635259 Score: 1298
Period size: 324 Copynumber: 2.0 Consensus size: 324
86634601 CTTAGCTATG
86634611 TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAAACAACAACAACAATACTTACATACATA
1 TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAAACAACAACAACAATACTTACATACATA
86634676 TTAGTAGTAATTCGCCATTTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCACTT
66 TTAGTAGTAATTCGCCATTTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCACTT
86634741 GTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTAAC
131 GTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTAAC
86634806 CTTTTCTTTTCGCTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCTTT
196 CTTTTCTTTTCGCTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCTTT
86634871 TTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTAA
261 TTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTAA
86634935 TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAAACAACAACAACAATACTTACATACATA
1 TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAAACAACAACAACAATACTTACATACATA
86635000 TTAGTAGTAATTCGCCATTTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCACTT
66 TTAGTAGTAATTCGCCATTTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCACTT
86635065 GTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTAAC
131 GTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTAAC
86635130 CTTTTCTTTTCGCTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCTTT
196 CTTTTCTTTTCGCTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCTTT
86635195 TTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTAA
261 TTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTAA
86635259 T
1 T
86635260 AACTTCTCAT
Statistics
Matches: 325, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
324 325 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (324 bp):
TTTTGTTCTTCTATGTATTTGACTTGTTCTTAAAAAAAACAACAACAACAATACTTACATACATA
TTAGTAGTAATTCGCCATTTTTTGAGCTTGAGTGTTAATTCCATATTCTGAGAAAAAGCTCACTT
GTATTCAACTGAATAGTAGTCATTTTTCTAGATAGGTAATTTTTCAATTCAATCTCGATTCTAAC
CTTTTCTTTTCGCTTGTGACCATACCCTCTAACCAAAGCCACGTTACAACCCTCTAAAGACCTTT
TTGATTGAGGTATCATCTCAATATATAGTGGTGGAGATTTGATTTTTAAGCAAGCCTATGGTAA
Found at i:86643075 original size:13 final size:13
Alignment explanation
Indices: 86643057--86643081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86643047 TCCAAGTTTC
86643057 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
86643070 TTTTTCTTTTTT
1 TTTTTCTTTTTT
86643082 GATCCATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:86652282 original size:21 final size:22
Alignment explanation
Indices: 86652253--86652299 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
86652243 CAGAAGGAGT
*
86652253 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
86652275 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
86652296 GAGT
1 GAGT
86652300 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:86655331 original size:24 final size:23
Alignment explanation
Indices: 86655299--86655346 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 23
86655289 GAATCATTGA
86655299 ATGATGACGTGGTAGATTATATG
1 ATGATGACGTGGTAGATTATATG
*
86655322 ATGATTGACGTGGTAGTTTATATG
1 ATGA-TGACGTGGTAGATTATATG
86655346 A
1 A
86655347 AAAATTGATG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.29, C:0.04, G:0.29, T:0.38
Consensus pattern (23 bp):
ATGATGACGTGGTAGATTATATG
Found at i:86655443 original size:30 final size:30
Alignment explanation
Indices: 86655376--86655433 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
86655366 TACTTAATTT
86655376 GATTTAATT-TTTTAAAATTATTTTATGAG
1 GATTTAATTATTTTAAAATTATTTTATGAG
**
86655405 GATTTAATTATTTTATTATTATTTTATGA
1 GATTTAATTATTTTAAAATTATTTTATGA
86655434 TTTTTTAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (30 bp):
GATTTAATTATTTTAAAATTATTTTATGAG
Found at i:86663236 original size:9 final size:9
Alignment explanation
Indices: 86663222--86663251 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
86663212 GATCGAGTAA
86663222 AATTAAATT
1 AATTAAATT
86663231 AATTAAATT
1 AATTAAATT
86663240 AATTTAAATT
1 AA-TTAAATT
86663250 AA
1 AA
86663252 AATAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
AATTAAATT
Found at i:86663746 original size:62 final size:59
Alignment explanation
Indices: 86663667--86663800 Score: 180
Period size: 62 Copynumber: 2.2 Consensus size: 59
86663657 TCCAAAAATG
* * *
86663667 ATATTATTTTAGT-AGATTTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATT
* * *
86663728 CTATTAGTTTAATAAGATTTAATATTAAATTTAATCTAATATTTTTCTTGATAAATATT
1 ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
86663787 ATATTAATTTAATA
1 ATATTAATTTAATA
86663801 TTGAAATAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
59 22 0.34
60 1 0.02
61 11 0.17
62 31 0.48
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.51
Consensus pattern (59 bp):
ATATTAATTTAATAAGATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATATT
Found at i:86667592 original size:43 final size:43
Alignment explanation
Indices: 86667544--86667696 Score: 148
Period size: 43 Copynumber: 3.5 Consensus size: 43
86667534 TTCCGATATA
*
86667544 TGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCAATTTT
1 TGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAATTTT
* * * *
86667587 TGATTTCGTGTAAGACC-TCGTTTGGGACATTGGCATCGATTTG
1 TGATTTCGTGTAAGACCAT-GTCTGGGACGTTGGCATCAATTTT
* * * **
86667630 TGATTTACGGGTAAGACCTTGTCTAGGACAG-TGGCATCAATAGT
1 TGATTT-CGTGTAAGACCATGTCTGGGAC-GTTGGCATCAATTTT
* * *
86667674 TGATTACATGTAAGACCACGTCT
1 TGATTTCGTGTAAGACCATGTCT
86667697 AAGACATTGG
Statistics
Matches: 88, Mismatches: 18, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 1 0.01
43 55 0.62
44 31 0.35
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.34
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCATGTCTGGGACGTTGGCATCAATTTT
Found at i:86667659 original size:44 final size:43
Alignment explanation
Indices: 86667544--86667670 Score: 155
Period size: 43 Copynumber: 2.9 Consensus size: 43
86667534 TTCCGATATA
* * * *
86667544 TGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCAATTTT
1 TGATTTCGTGTAAGACCTTGTCTGGGACATTGGCATCAATTTG
* * *
86667587 TGATTTCGTGTAAGACCTCGTTTGGGACATTGGCATCGATTTG
1 TGATTTCGTGTAAGACCTTGTCTGGGACATTGGCATCAATTTG
* * *
86667630 TGATTTACGGGTAAGACCTTGTCTAGGACAGTGGCATCAAT
1 TGATTT-CGTGTAAGACCTTGTCTGGGACATTGGCATCAAT
86667671 AGTTGATTAC
Statistics
Matches: 70, Mismatches: 13, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
43 42 0.60
44 28 0.40
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCTTGTCTGGGACATTGGCATCAATTTG
Found at i:86667677 original size:87 final size:86
Alignment explanation
Indices: 86667544--86667709 Score: 199
Period size: 87 Copynumber: 1.9 Consensus size: 86
86667534 TTCCGATATA
* * ** * * * *
86667544 TGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCAATTTTTGATTTCGTGTAAGACCTCGTT
1 TGATTTCGGGTAAGACCATGTCTAGGACGTTGACATCAATAGTTGATTACATGTAAGACCACGTC
**
86667609 TGGGACATTGGCATCGATTTG
66 TAAGACATTGGCATCGATTTG
* *
86667630 TGATTTACGGGTAAGACCTTGTCTAGGACAG-TGGCATCAATAGTTGATTACATGTAAGACCACG
1 TGATTT-CGGGTAAGACCATGTCTAGGAC-GTTGACATCAATAGTTGATTACATGTAAGACCACG
86667694 TCTAAGACATTGGCAT
64 TCTAAGACATTGGCAT
86667710 TGTACACGCT
Statistics
Matches: 66, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
86 6 0.09
87 59 0.89
88 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (86 bp):
TGATTTCGGGTAAGACCATGTCTAGGACGTTGACATCAATAGTTGATTACATGTAAGACCACGTC
TAAGACATTGGCATCGATTTG
Found at i:86672347 original size:10 final size:10
Alignment explanation
Indices: 86672332--86672358 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
86672322 TACTTCTTCA
86672332 AGCTCAAATC
1 AGCTCAAATC
86672342 AGCTCAAATC
1 AGCTCAAATC
86672352 AGCTCAA
1 AGCTCAA
86672359 CTTCAACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.30, G:0.11, T:0.19
Consensus pattern (10 bp):
AGCTCAAATC
Found at i:86675537 original size:16 final size:16
Alignment explanation
Indices: 86675513--86675566 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
86675503 TTTGGTTCGC
* * *
86675513 TGTAGTGGATTAGAGA
1 TGTAATGGAATAGAGG
*
86675529 TGTATTGGAATAGAGG
1 TGTAATGGAATAGAGG
86675545 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
86675561 TGTAAT
1 TGTAAT
86675567 AGCAAATCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.33, C:0.00, G:0.35, T:0.31
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:86675650 original size:39 final size:43
Alignment explanation
Indices: 86675545--86675654 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
86675535 GGAATAGAGG
86675545 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
86675590 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
86675630 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
86675655 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:86675822 original size:18 final size:17
Alignment explanation
Indices: 86675800--86675834 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
86675790 TTATTATTAA
*
86675800 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
86675818 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
86675835 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:86675893 original size:61 final size:61
Alignment explanation
Indices: 86675815--86676134 Score: 231
Period size: 61 Copynumber: 5.3 Consensus size: 61
86675805 TTTTAATTAA
* *
86675815 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTGATATGAATTTACTCAAATAAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
* * * * * *
86675876 AATATATGATACTATAAAA-T-AT-A-AATTAACATAATTATTAT-TAAATATA-TTAGAATTAA
1 AATATATAATACTATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTACTCA-AA-TAA
86675935 -
61 T
* *
86675935 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
* ** * * * * *
86675996 AATATATGATACTATAAAA--GATAAT--TTAACATAATTATTAT-TAAATATATCTTAATTAA-
1 AATATATAATACTATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTA-CTCAAATAAT
* *
86676055 AATATATAAT-TTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATACT-ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
*
86676116 AATATATTATACTATAAAA
1 AATATATAATACTATAAAA
86676135 GATAATTTGA
Statistics
Matches: 194, Mismatches: 38, Indels: 54
0.68 0.13 0.19
Matches are distributed among these distances:
57 6 0.03
58 7 0.04
59 53 0.27
60 46 0.24
61 68 0.35
62 8 0.04
63 6 0.03
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (61 bp):
AATATATAATACTATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATAAT
Found at i:86676192 original size:59 final size:58
Alignment explanation
Indices: 86675786--86676193 Score: 195
Period size: 59 Copynumber: 6.8 Consensus size: 58
86675776 ATATTTAAAT
* *
86675786 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAAT-AAA-AT--TCTT-A
1 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAGATAAT-TTAA
** * * * *
86675840 ATAATTAATATTCTGATATGAATTTACTCAAATAATAATATATGATACT-ATAAAATATAAATTA
1 ATAATTAATATT-AAATAT--ATTT--T-AATTAA-AATATATGAT-TTAATAAAAGATAATTTA
86675904 A
58 A
* ** *
86675905 CATAATTATTATTAAATATATTAGAATTAAAATATATAATTTAAT-AAA-AT--TCTT-A
1 -ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAGATAAT-TTAA
** * * *
86675960 ATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT-ATAAAAGATAATTTA
1 ATAATTAATATT-AAATAT--ATTT--T--AATTAAAATATATGAT-TTAATAAAAGATAATTTA
86676024 A
58 A
* * *
86676025 CATAATTATTATTAAATATATCTTAATTAAAATATATAATTTAAT-AAA-AT--TCTT-A
1 -ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAGATAAT-TTAA
** * * *
86676080 ATAATTAATATTCTTATATGAATTTACTCAAATCATAATAT-ATTATACTATAAAAGATAATTTG
1 ATAATTAATATT-AAATAT-ATTTTAATTAAA--AT-ATATGATT-TA--ATAAAAGATAATTT-
86676144 AA
57 AA
86676146 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAA
1 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAA
86676194 TTTAAAATAA
Statistics
Matches: 262, Mismatches: 45, Indels: 89
0.66 0.11 0.22
Matches are distributed among these distances:
54 33 0.13
55 15 0.06
56 12 0.05
57 11 0.04
58 13 0.05
59 39 0.15
60 10 0.04
61 35 0.13
62 16 0.06
63 12 0.05
64 15 0.06
65 16 0.06
66 35 0.13
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (58 bp):
ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAGATAATTTAA
Found at i:86676206 original size:120 final size:120
Alignment explanation
Indices: 86675786--86676195 Score: 714
Period size: 120 Copynumber: 3.4 Consensus size: 120
86675776 ATATTTAAAT
86675786 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
* * * *
86675851 TCTGATATGAATTTACTCAAATAATAATATATGATACTATAAAATATAAATTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
**
86675906 ATAATTATTATTAAATATATTAGAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
86675971 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
*
86676026 ATAATTATTATTAAATATATCTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
*
86676091 TCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTGAA-
66 TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT-AAC
* *
86676146 ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
86676196 TAAAATAATT
Statistics
Matches: 276, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 274 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATAT
TCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAAC
Found at i:86680032 original size:8 final size:8
Alignment explanation
Indices: 86680021--86680058 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
86680011 AATAAAAATA
86680021 AAAATTTT
1 AAAATTTT
86680029 AAAATTTT
1 AAAATTTT
86680037 AAAATTTT
1 AAAATTTT
* *
86680045 AAAAATTA
1 AAAATTTT
86680053 AAAATT
1 AAAATT
86680059 AAAAATTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
AAAATTTT
Found at i:86680063 original size:8 final size:7
Alignment explanation
Indices: 86679999--86680081 Score: 80
Period size: 7 Copynumber: 11.4 Consensus size: 7
86679989 TGAAAAATAA
86679999 TAAAAATT
1 TAAAAA-T
*
86680007 TTAAAA-
1 TAAAAAT
86680013 TAAAAA-
1 TAAAAAT
86680019 TAAAAATTT
1 TAAAAA--T
*
86680028 TAAAATTT
1 TAAAA-AT
*
86680036 TAAAATTT
1 TAAAA-AT
86680044 TAAAAAT
1 TAAAAAT
86680051 TAAAAAT
1 TAAAAAT
86680058 TAAAAAT
1 TAAAAAT
86680065 TAAAAAT
1 TAAAAAT
86680072 TAAAAAT
1 TAAAAAT
86680079 TAA
1 TAA
86680082 TAAAAAAATT
Statistics
Matches: 67, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
6 11 0.16
7 32 0.48
8 19 0.28
9 5 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (7 bp):
TAAAAAT
Found at i:86680676 original size:19 final size:20
Alignment explanation
Indices: 86680630--86680677 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
86680620 CGTATTTAAT
86680630 TTTTTTAATTATTTTAAGAG
1 TTTTTTAATTATTTTAAGAG
*
86680650 TTTCTTTAA-TA-TTTAAGTGG
1 TTT-TTTAATTATTTTAAG-AG
86680670 TTTTTTAA
1 TTTTTTAA
86680678 AAATATATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 11 0.44
20 9 0.36
21 5 0.20
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.60
Consensus pattern (20 bp):
TTTTTTAATTATTTTAAGAG
Found at i:86680851 original size:3 final size:3
Alignment explanation
Indices: 86680845--86680916 Score: 144
Period size: 3 Copynumber: 24.0 Consensus size: 3
86680835 CTTAATAATT
86680845 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
86680893 TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC
86680917 ATTAGAAACT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:86681362 original size:15 final size:16
Alignment explanation
Indices: 86681342--86681372 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
86681332 TAAACCATTA
86681342 AAAAAAATTAA-ATTT
1 AAAAAAATTAATATTT
86681357 AAAAAAATTAATATTT
1 AAAAAAATTAATATTT
86681373 TCAATGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAAAAATTAATATTT
Found at i:86683736 original size:6 final size:6
Alignment explanation
Indices: 86683725--86683749 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
86683715 CACCCAAGCC
86683725 ATCCAA ATCCAA ATCCAA ATCCAA A
1 ATCCAA ATCCAA ATCCAA ATCCAA A
86683750 CACAAGATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (6 bp):
ATCCAA
Found at i:86686407 original size:5 final size:5
Alignment explanation
Indices: 86686387--86686419 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
86686377 TGAAGGAATT
86686387 AAAAG ACAAA- AAAAG AAAAG AAAAG AAAAG AAA
1 AAAAG A-AAAG AAAAG AAAAG AAAAG AAAAG AAA
86686420 CAGGTTTTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 3 0.12
5 20 0.77
6 3 0.12
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:86686462 original size:7 final size:7
Alignment explanation
Indices: 86686450--86686477 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
86686440 AATGAGACCG
86686450 GTTCCAA
1 GTTCCAA
86686457 GTTCCAA
1 GTTCCAA
86686464 GTTCCAA
1 GTTCCAA
86686471 GTTCCAA
1 GTTCCAA
86686478 TTTCTAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.14, T:0.29
Consensus pattern (7 bp):
GTTCCAA
Found at i:86687525 original size:20 final size:20
Alignment explanation
Indices: 86687471--86687525 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
86687461 TCAAATATAC
*
86687471 TATATTAAAAAATAATTTAAAA
1 TATATT-AAAAAT-ATTCAAAA
*
86687493 TTTA-TAAAAATATTCAAAA
1 TATATTAAAAATATTCAAAA
86687512 TATATTAAAAATAT
1 TATATTAAAAATAT
86687526 ATAGAAAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 10 0.34
20 15 0.52
21 1 0.03
22 3 0.10
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (20 bp):
TATATTAAAAATATTCAAAA
Found at i:86687533 original size:11 final size:11
Alignment explanation
Indices: 86687471--86687527 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
86687461 TCAAATATAC
86687471 TATATTAAAAA
1 TATATTAAAAA
*
86687482 -ATAATTTAAAA
1 TAT-ATTAAAAA
*
86687493 TTTA-T-AAAA
1 TATATTAAAAA
*
86687502 -ATATTCAAAA
1 TATATTAAAAA
86687512 TATATTAAAAA
1 TATATTAAAAA
86687523 TATAT
1 TATAT
86687528 AGAAAAAACT
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
8 2 0.05
9 5 0.14
10 7 0.19
11 22 0.59
12 1 0.03
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (11 bp):
TATATTAAAAA
Found at i:86690874 original size:21 final size:21
Alignment explanation
Indices: 86690833--86690887 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
86690823 TATTGAATTG
86690833 TTTTGAATTTA-ATA-A-AAT
1 TTTTGAATTTATATATATAAT
86690851 TTTAT-AATTTATATATATAAT
1 TTT-TGAATTTATATATATAAT
*
86690872 TTTTGAATTTTTATAT
1 TTTTGAATTTATATAT
86690888 TAGTAGATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 9 0.29
19 4 0.13
20 2 0.06
21 16 0.52
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
TTTTGAATTTATATATATAAT
Found at i:86692339 original size:18 final size:19
Alignment explanation
Indices: 86692316--86692352 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
86692306 AAGTTCAATG
86692316 ATTAAA-AAAAGACAAAAA
1 ATTAAATAAAAGACAAAAA
*
86692334 ATTAAATGAAAGACAAAAA
1 ATTAAATAAAAGACAAAAA
86692353 TAATTTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.73, C:0.05, G:0.08, T:0.14
Consensus pattern (19 bp):
ATTAAATAAAAGACAAAAA
Found at i:86695190 original size:14 final size:14
Alignment explanation
Indices: 86695171--86695201 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
86695161 TCAAGTTGAG
*
86695171 TTGAATTTTAAAAT
1 TTGAATATTAAAAT
86695185 TTGAATATTAAAAT
1 TTGAATATTAAAAT
86695199 TTG
1 TTG
86695202 GATAACTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (14 bp):
TTGAATATTAAAAT
Found at i:86696277 original size:16 final size:18
Alignment explanation
Indices: 86696251--86696284 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
86696241 TAGAATTAGG
86696251 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
86696268 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
86696285 CAAATAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:86696919 original size:15 final size:14
Alignment explanation
Indices: 86696899--86696946 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
86696889 AGTATACTTG
86696899 TTATTTTAAATAATA
1 TTATTTTAAATAA-A
*
86696914 TTATTTTAAATTAA
1 TTATTTTAAATAAA
* *
86696928 TTACTTAAAATAAAA
1 TTATTTTAAAT-AAA
86696943 TTAT
1 TTAT
86696947 ATTATCAATA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATTTTAAATAAA
Found at i:86697529 original size:9 final size:9
Alignment explanation
Indices: 86697504--86697543 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
86697494 TCAAAGTCTT
86697504 TAATATTTTA
1 TAAT-TTTTA
86697514 T-ATTTTTA
1 TAATTTTTA
86697522 TAATTTTTAA
1 TAATTTTT-A
86697532 TAATTTTTA
1 TAATTTTTA
86697541 TAA
1 TAA
86697544 GTTTATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
8 6 0.21
9 12 0.43
10 10 0.36
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (9 bp):
TAATTTTTA
Found at i:86702502 original size:4 final size:4
Alignment explanation
Indices: 86702495--86702519 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
86702485 ATATACTGTT
86702495 TTAA TTAA TTAA TTAA TTAA TTAA T
1 TTAA TTAA TTAA TTAA TTAA TTAA T
86702520 GACTATACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:86705469 original size:23 final size:23
Alignment explanation
Indices: 86705437--86705481 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
86705427 TGAAAAATAA
* *
86705437 ATTTTTAATTTTTAATTGAAAAC
1 ATTTTCAATTTTAAATTGAAAAC
86705460 ATTTTCAATTTTAAATTGAAAA
1 ATTTTCAATTTTAAATTGAAAA
86705482 ATTAAAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.49
Consensus pattern (23 bp):
ATTTTCAATTTTAAATTGAAAAC
Found at i:86710265 original size:18 final size:18
Alignment explanation
Indices: 86710204--86710358 Score: 199
Period size: 18 Copynumber: 8.7 Consensus size: 18
86710194 TTCAAGGATA
*
86710204 TGCAATCTTAGATGTGAT
1 TGCAATCTTAGATATGAT
*
86710222 ATGCCATCTTAGATATGA-
1 -TGCAATCTTAGATATGAT
*
86710240 TACAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
*
86710258 TGCAATCTTCGATATGA-
1 TGCAATCTTAGATATGAT
*
86710275 TCCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
86710293 TGCAATCTTAGATATGA-
1 TGCAATCTTAGATATGAT
* *
86710310 TACAATCTTAGACATGAT
1 TGCAATCTTAGATATGAT
86710328 TGCAATCTTAGATATGAT
1 TGCAATCTTAGATATGAT
*
86710346 ATACAATCTTAGA
1 -TGCAATCTTAGA
86710359 AGATATGATT
Statistics
Matches: 118, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
17 45 0.38
18 47 0.40
19 26 0.22
ACGTcount: A:0.35, C:0.14, G:0.15, T:0.36
Consensus pattern (18 bp):
TGCAATCTTAGATATGAT
Found at i:86710273 original size:35 final size:35
Alignment explanation
Indices: 86710206--86710358 Score: 234
Period size: 35 Copynumber: 4.3 Consensus size: 35
86710196 CAAGGATATG
* *
86710206 CAATCTTAGATGTGATATGCCATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
* *
86710242 CAATCTTAGATATGATTGCAATCTTCGATATGATC
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
86710277 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
86710312 CAATCTTAGACATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
86710349 CAATCTTAGA
1 CAATCTTAGA
86710359 AGATATGATT
Statistics
Matches: 108, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
35 80 0.74
36 15 0.14
37 13 0.12
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:86711781 original size:43 final size:43
Alignment explanation
Indices: 86711712--86711856 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
86711702 TCCTTGATAT
* *
86711712 GGTCTTACATGTTATC-ACTTATCGATGTCACTGTCTCACACAG
1 GGTCTTACATGTAATCGA-TTAACGATGTCACTGTCTCACACAG
* * *
86711755 GGTCTTACATGAAATCGATTAACGATGCTGA-TGTCTCACACAT
1 GGTCTTACATGTAATCGATTAACGATG-TCACTGTCTCACACAG
* * * * * *
86711798 GGTCTTACACGTAATTG-TAACACAATGCCACTGTCCCACACAG
1 GGTCTTACATGTAATCGATTA-ACGATGTCACTGTCTCACACAG
*
86711841 GGTTTTACATGTAATC
1 GGTCTTACATGTAATC
86711857 ACATTTCAAT
Statistics
Matches: 81, Mismatches: 17, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
42 3 0.04
43 75 0.93
44 3 0.04
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (43 bp):
GGTCTTACATGTAATCGATTAACGATGTCACTGTCTCACACAG
Found at i:86713132 original size:2 final size:2
Alignment explanation
Indices: 86713125--86713159 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
86713115 AGCAGCAAAA
86713125 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
86713160 AAAATATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:86716181 original size:23 final size:23
Alignment explanation
Indices: 86716155--86716199 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
86716145 GTTTTTCCTT
86716155 TTGTAGGAGTGTTTTTTTCTCAA
1 TTGTAGGAGTGTTTTTTTCTCAA
86716178 TTGTAGGAGTGTTTTTTTCTCA
1 TTGTAGGAGTGTTTTTTTCTCA
86716200 GTTGATTGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.16, C:0.09, G:0.22, T:0.53
Consensus pattern (23 bp):
TTGTAGGAGTGTTTTTTTCTCAA
Found at i:86720641 original size:10 final size:10
Alignment explanation
Indices: 86720619--86720670 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
86720609 AATTCTATCG
*
86720619 AAAA-TAATC
1 AAAATTAATT
86720628 AAAATTAATT
1 AAAATTAATT
*
86720638 AAAATTTATTAT
1 AAAA-TTAAT-T
86720650 AAAATTAATT
1 AAAATTAATT
*
86720660 AAAATTCATT
1 AAAATTAATT
86720670 A
1 A
86720671 TGTTAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 4 0.11
10 19 0.53
11 8 0.22
12 5 0.14
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (10 bp):
AAAATTAATT
Found at i:86720681 original size:22 final size:22
Alignment explanation
Indices: 86720628--86720671 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
86720618 GAAAATAATC
*
86720628 AAAATTAATTAAAATTTATTAT
1 AAAATTAATTAAAATTCATTAT
86720650 AAAATTAATTAAAATTCATTAT
1 AAAATTAATTAAAATTCATTAT
86720672 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATTAAAATTCATTAT
Found at i:86736937 original size:22 final size:23
Alignment explanation
Indices: 86736899--86736948 Score: 75
Period size: 22 Copynumber: 2.2 Consensus size: 23
86736889 TCTGTCAAAA
* *
86736899 ATTATCAAAGTTAATTAAAATTT
1 ATTATCAAAATTAATTAAAATTC
86736922 ATTAT-AAAATTAATTAAAATTC
1 ATTATCAAAATTAATTAAAATTC
86736944 ATTAT
1 ATTAT
86736949 GTTAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (23 bp):
ATTATCAAAATTAATTAAAATTC
Found at i:86738835 original size:20 final size:18
Alignment explanation
Indices: 86738812--86738850 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 18
86738802 ATAATAATTA
86738812 TATTTTATTAAATTATGTAT
1 TATTTTATT-AATT-TGTAT
86738832 TATTTTATTAATTTGTAT
1 TATTTTATTAATTTGTAT
86738850 T
1 T
86738851 TAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 4 0.21
20 9 0.47
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (18 bp):
TATTTTATTAATTTGTAT
Found at i:86738850 original size:15 final size:15
Alignment explanation
Indices: 86738782--86738851 Score: 50
Period size: 15 Copynumber: 4.2 Consensus size: 15
86738772 ATATTATAAT
*
86738782 TTTTATTAATTCATA
1 TTTTATTAATTTATA
*
86738797 TTTTAATAATAATTATA
1 TTTTATTAAT--TTATA
86738814 TTTTATTAAATTATGTATTA
1 TTTTATT-AA-T-T-TA-TA
*
86738834 TTTTATTAATTTGTA
1 TTTTATTAATTTATA
86738849 TTT
1 TTT
86738852 AATAAAAATC
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
15 14 0.31
16 1 0.02
17 11 0.24
18 5 0.11
19 5 0.11
20 9 0.20
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.61
Consensus pattern (15 bp):
TTTTATTAATTTATA
Found at i:86739097 original size:16 final size:16
Alignment explanation
Indices: 86739076--86739110 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
86739066 TGAATTACTA
*
86739076 ATTACAACTTTATTTC
1 ATTACAACTCTATTTC
86739092 ATTACAACTCTATTTC
1 ATTACAACTCTATTTC
86739108 ATT
1 ATT
86739111 CCCCTAACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.20, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTACAACTCTATTTC
Found at i:86740280 original size:14 final size:15
Alignment explanation
Indices: 86740242--86740286 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
86740232 CCATATTTGA
*
86740242 TTTTTTTAAAATTAG
1 TTTTTTTAAAAATAG
86740257 TTTTTATTTAAAAATAG
1 -TTTT-TTTAAAAATAG
86740274 -TTTTTTAAAAATA
1 TTTTTTTAAAAATA
86740287 TAATACACTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 10 0.37
15 3 0.11
16 4 0.15
17 10 0.37
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (15 bp):
TTTTTTTAAAAATAG
Found at i:86740280 original size:18 final size:17
Alignment explanation
Indices: 86740242--86740278 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
86740232 CCATATTTGA
*
86740242 TTTT-TTTAAAATTAGT
1 TTTTATTTAAAAATAGT
86740258 TTTTATTTAAAAATAGT
1 TTTTATTTAAAAATAGT
86740275 TTTT
1 TTTT
86740279 TAAAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TTTTATTTAAAAATAGT
Found at i:86740523 original size:18 final size:18
Alignment explanation
Indices: 86740477--86740525 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 18
86740467 TTAATGATTT
*
86740477 AATATAAATATATATAATT
1 AATAT-AATATATATAATC
*
86740496 ATTATTTAATATATATAATC
1 A--ATATAATATATATAATC
86740516 AATATAATAT
1 AATATAATAT
86740526 TTTTTTATAG
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 8 0.32
19 1 0.04
20 13 0.52
21 3 0.12
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AATATAATATATATAATC
Found at i:86741585 original size:16 final size:18
Alignment explanation
Indices: 86741564--86741596 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
86741554 AAATATCTTT
86741564 ATTTTTA-GTA-AATATA
1 ATTTTTATGTATAATATA
86741580 ATTTTTATGTATAATAT
1 ATTTTTATGTATAATAT
86741597 TTATTTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (18 bp):
ATTTTTATGTATAATATA
Found at i:86741706 original size:32 final size:32
Alignment explanation
Indices: 86741670--86741772 Score: 109
Period size: 34 Copynumber: 3.1 Consensus size: 32
86741660 TTAACTAATG
86741670 TTTATAATTAATAAATATATTATTTTAATTTT
1 TTTATAATTAATAAATATATTATTTTAATTTT
** * *
86741702 TTTATTTTTAATTAAAGTA-AATATTTTTAATTAATG
1 TTTATAATTAA-TAAA-TATATTA-TTTTAATT--TT
86741738 TTTATAATTAATAAATATATTATTTTCAATTTT
1 TTTATAATTAATAAATATATTATTTT-AATTTT
86741771 TT
1 TT
86741773 ATTTTTAATT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
32 9 0.16
33 10 0.18
34 16 0.29
35 11 0.20
36 10 0.18
ACGTcount: A:0.39, C:0.01, G:0.02, T:0.58
Consensus pattern (32 bp):
TTTATAATTAATAAATATATTATTTTAATTTT
Found at i:86741755 original size:68 final size:68
Alignment explanation
Indices: 86741646--86741782 Score: 249
Period size: 68 Copynumber: 2.0 Consensus size: 68
86741636 TATAGGTGGA
86741646 TAAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTT-AATTTTTTTATTTT
1 TAAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTTCAA-TTTTTTATTTT
86741710 TAAT
65 TAAT
*
86741714 TAAAGTAAATATTTTTAATTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTT
1 TAAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTT
86741779 AAT
66 AAT
86741782 T
1 T
86741783 CATCTTTTTA
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
68 65 0.97
69 2 0.03
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (68 bp):
TAAAGTAAATATTTTTAACTAATGTTTATAATTAATAAATATATTATTTTCAATTTTTTATTTTT
AAT
Found at i:86741781 original size:32 final size:31
Alignment explanation
Indices: 86741677--86741781 Score: 104
Period size: 32 Copynumber: 3.2 Consensus size: 31
86741667 ATGTTTATAA
86741677 TTAATAAATATATTATTTTAATTTTTTTATTT
1 TTAATAAATATATTATTTTAA-TTTTTTATTT
* **
86741709 TTAATTAAAGTA-AATATTTTTAATTAATGTTTATAA
1 TTAA-TAAA-TATATTA-TTTTAATT--T-TTTATTT
86741745 TTAATAAATATATTATTTTCAATTTTTTATTT
1 TTAATAAATATATTATTTT-AATTTTTTATTT
86741777 TTAAT
1 TTAAT
86741782 TCATCTTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
32 14 0.24
33 10 0.17
34 14 0.24
35 12 0.20
36 9 0.15
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (31 bp):
TTAATAAATATATTATTTTAATTTTTTATTT
Found at i:86741851 original size:32 final size:35
Alignment explanation
Indices: 86741815--86741878 Score: 80
Period size: 32 Copynumber: 1.9 Consensus size: 35
86741805 TTTATTTATA
86741815 AAATAAAATAATTAT-TGT-A-ATTTATTTTTAGT
1 AAATAAAATAATTATGTGTAATATTTATTTTTAGT
* **
86741847 AAATATAATTTTTATGTGTAATATTTATTTTT
1 AAATAAAATAATTATGTGTAATATTTATTTTT
86741879 CAATCCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
32 12 0.46
33 3 0.12
34 1 0.04
35 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (35 bp):
AAATAAAATAATTATGTGTAATATTTATTTTTAGT
Found at i:86745228 original size:37 final size:37
Alignment explanation
Indices: 86745177--86745252 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
86745167 TTAGCAAGTG
*
86745177 GTTAGATAACTGCATAGACAAAGCCCAAAGCATTTTT
1 GTTAGATAACTGCATAGACAAAGCCCAAAGCACTTTT
*
86745214 GTTAGATAAGTGCATAGACAAAGCCCAAAGCACTTTT
1 GTTAGATAACTGCATAGACAAAGCCCAAAGCACTTTT
86745251 GT
1 GT
86745253 ACCAAGTAAC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (37 bp):
GTTAGATAACTGCATAGACAAAGCCCAAAGCACTTTT
Found at i:86761640 original size:19 final size:19
Alignment explanation
Indices: 86761616--86761704 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
86761606 TCATATCTTT
*
86761616 TAAGATTGTATATCATATC
1 TAAGATTGCATATCATATC
86761635 TAAGATTGCA-ATCATATC
1 TAAGATTGCATATCATATC
86761653 TAAGATTG--TATCATATC
1 TAAGATTGCATATCATATC
*
86761670 TAAGATTGCATATCACATC
1 TAAGATTGCATATCATATC
86761689 TAAGATTGCATATCAT
1 TAAGATTGCATATCAT
86761705 TGAACATTAT
Statistics
Matches: 64, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.25
18 16 0.25
19 32 0.50
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:86761671 original size:35 final size:37
Alignment explanation
Indices: 86761616--86761704 Score: 137
Period size: 35 Copynumber: 2.4 Consensus size: 37
86761606 TCATATCTTT
*
86761616 TAAGATTGTATATCATATCTAAGATTGCA-ATCATATC
1 TAAGATTG-ATATCATATCTAAGATTGCATATCACATC
86761653 TAAGATTG-TATCATATCTAAGATTGCATATCACATC
1 TAAGATTGATATCATATCTAAGATTGCATATCACATC
86761689 TAAGATTGCATATCAT
1 TAAGATTG-ATATCAT
86761705 TGAACATTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
35 19 0.40
36 15 0.31
37 8 0.17
38 6 0.12
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCACATC
Found at i:86761683 original size:14 final size:15
Alignment explanation
Indices: 86761628--86761683 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
86761618 AGATTGTATA
86761628 TCATATCTAAGATTG
1 TCATATCTAAGATTG
86761643 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
86761661 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
86761678 -CATATC
1 TCATATC
86761684 ACATCTAAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:86762227 original size:44 final size:44
Alignment explanation
Indices: 86762177--86762369 Score: 289
Period size: 44 Copynumber: 4.4 Consensus size: 44
86762167 TGAAAACTAT
* *
86762177 ATCTGCTATCATCGATCTACTCCCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAA
* **
86762221 ATCTGCTATCTTTGATCTGC-CCTCTGACAATACAGAGACACCAA
1 ATCTGCTATCTTCGATCTGCTCC-CTGACAATACAGAGATGCCAA
86762265 ATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAA
* **
86762309 ATCTACTATCTTCGATCTGCTATCTGACAATACAGAGATGCCAA
1 ATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAA
*
86762353 ATCTGCTATCTTGGATC
1 ATCTGCTATCTTCGATC
86762370 CGCTTCGATG
Statistics
Matches: 134, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
43 2 0.01
44 130 0.97
45 2 0.01
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGCTCCCTGACAATACAGAGATGCCAA
Found at i:86762473 original size:92 final size:90
Alignment explanation
Indices: 86762317--86762595 Score: 355
Period size: 92 Copynumber: 3.0 Consensus size: 90
86762307 AAATCTACTA
* * * *
86762317 TCTTCGATCTGCTATCTGAC-AATACAGAGATGCCAAATCTGCTATCTTGGATCCGCTTCGATGT
1 TCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCTTC-ATCTTGGATCCGCTTCGATGT
*
86762381 AAACACATGAAGATCAGATCTGCTATG
65 AAACAC-TGAAGGTCAGATCTGCTATG
* * ** *
86762408 TCTTCGATCTGCTACCCGTCTAATATAGAGATGCCAAATCTATCATCTTAGATTTGCTTCAATGT
1 TCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCT-TCATCTTGGATCCGCTTCGATGT
*
86762473 AAACACCTGAAGGTCAGATCTACTATG
65 AAACA-CTGAAGGTCAGATCTGCTATG
* *
86762500 TTTTCGATCTGCT-CCTCGTCTCATACAGAGATGCCAAATCTGTCATCTTGGATCCGCTTCGATG
1 TCTTCGATCTGCTACC-CGTCTAATACAGAGATGCCAAATCT-TCATCTTGGATCCGCTTCGATG
*
86762564 TAAACATCTGAAGGTCAGATCTGCTATA
64 TAAACA-CTGAAGGTCAGATCTGCTATG
86762592 TCTT
1 TCTT
86762596 AGCCTATTAC
Statistics
Matches: 161, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
91 19 0.12
92 140 0.87
93 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (90 bp):
TCTTCGATCTGCTACCCGTCTAATACAGAGATGCCAAATCTTCATCTTGGATCCGCTTCGATGTA
AACACTGAAGGTCAGATCTGCTATG
Found at i:86762847 original size:84 final size:84
Alignment explanation
Indices: 86762580--86763135 Score: 756
Period size: 84 Copynumber: 6.6 Consensus size: 84
86762570 TCTGAAGGTC
* * * * **
86762580 AGATCTGCTATATCTTAGCCTATTACCCTACTGCTTAGGGAGTTAAGGCGAGTCTTCAATCCACT
1 AGATCTG-TA-ATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCT
86762645 CCACTACTGCTTAGGGAGATA
64 CCACTACTGCTTAGGGAGATA
* * * *
86762666 AGATTTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCACATCGACTTCGATCTAC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC-GA--GTCTTCGATCTGC
*
86762731 TCCGCTACTGCTTAGGGAGATA
63 TCCACTACTGCTTAGGGAGATA
* * * * *
86762753 AGATCTGTAATTTTAGCCTGTTACCTTATTACTTAGGGGGTTAAGGCGGGCCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
* *
86762818 ACTACTGCTTATGGAGATG
66 ACTACTGCTTAGGGAGATA
* *
86762837 AGATCTGTAATTTTAACCTGTTACCCTACTGCTTAGGAGGTTAAGGCGAGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
86762902 ACTACTGCTTAGGGAGATA
66 ACTACTGCTTAGGGAGATA
* * *
86762921 AGATCTGTAATTTTAGCCTGTTACCCTGCTGCTTACGGGGTTAAGGCGGGTCTTCGATCTGCTCC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
*
86762986 ACCACTGCTTAGGGAGATA
66 ACTACTGCTTAGGGAGATA
* * * *
86763005 AGATCTGCAATTTTAGCCTGTTACCCTACTGCTTAAGGGGTTAAGGC-ACATCTTCGATATGCTC
1 AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGA-GTCTTCGATCTGCTC
86763069 CACTACTGCTTAGGGAGATA
65 CACTACTGCTTAGGGAGATA
* * *
86763089 AGAAT-TGCAATTTTAACCTGTTACCCTACTGCTTAGGGGATTAAGGC
1 AG-ATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGC
86763136 ACTGAATTTT
Statistics
Matches: 420, Mismatches: 45, Indels: 12
0.88 0.09 0.03
Matches are distributed among these distances:
84 335 0.80
85 5 0.01
86 6 0.01
87 74 0.18
ACGTcount: A:0.23, C:0.22, G:0.23, T:0.32
Consensus pattern (84 bp):
AGATCTGTAATTTTAGCCTGTTACCCTACTGCTTAGGGGGTTAAGGCGAGTCTTCGATCTGCTCC
ACTACTGCTTAGGGAGATA
Found at i:86763144 original size:43 final size:43
Alignment explanation
Indices: 86762989--86763145 Score: 109
Period size: 43 Copynumber: 3.7 Consensus size: 43
86762979 CTGCTCCACC
*
86762989 ACTGCTTAGGGAGATAAG-ATCTGCAATTTTAGCCTGTTACCCT
1 ACTGCTTAGGGAGATAAGCA-CTGCAATTTTAACCTGTTACCCT
* ** *
86763032 ACTGCTTAAGGG-GTTAAGGCACAT-C--TTCGATA--TGCT-CCACT
1 ACTGCTT-AGGGAGATAA-GCAC-TGCAATTTTA-ACCTGTTACC-CT
* *
86763073 ACTGCTTAGGGAGATAAGAATTGCAATTTTAACCTGTTACCCT
1 ACTGCTTAGGGAGATAAGCACTGCAATTTTAACCTGTTACCCT
86763116 ACTGCTTAGGG-GATTAAGGCACTG-AATTTT
1 ACTGCTTAGGGAGA-TAA-GCACTGCAATTTT
86763146 GTAATTTTCA
Statistics
Matches: 86, Mismatches: 13, Indels: 30
0.67 0.10 0.23
Matches are distributed among these distances:
39 1 0.01
40 9 0.10
41 17 0.20
42 8 0.09
43 36 0.42
44 13 0.15
45 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (43 bp):
ACTGCTTAGGGAGATAAGCACTGCAATTTTAACCTGTTACCCT
Found at i:86764097 original size:7 final size:7
Alignment explanation
Indices: 86764085--86764153 Score: 72
Period size: 7 Copynumber: 9.7 Consensus size: 7
86764075 GGCCTCTCCA
86764085 TTTTTCT
1 TTTTTCT
86764092 TTTTTCT
1 TTTTTCT
86764099 TTTTTCT
1 TTTTTCT
86764106 CTTTTT-T
1 -TTTTTCT
86764113 CTTTTTCT
1 -TTTTTCT
86764121 TTTTT-T
1 TTTTTCT
86764127 CTTTTTCT
1 -TTTTTCT
86764135 TTTCTT-T
1 TTT-TTCT
*
86764142 TTTTCCT
1 TTTTTCT
86764149 TTTTT
1 TTTTT
86764154 TTGAAATAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
6 2 0.04
7 43 0.80
8 9 0.17
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTTCT
Found at i:86764101 original size:6 final size:6
Alignment explanation
Indices: 86764085--86764143 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
86764075 GGCCTCTCCA
* *
86764085 TTTTTC TTTTT- TCTTT- TTTCTC TTTTTTC TTTTTC TTTTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTTC --TTTTTC TTTTTC
86764134 -TTTTC TTTTT
1 TTTTTC TTTTT
86764144 TTCCTTTTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 12 0.27
6 21 0.48
7 5 0.11
8 6 0.14
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTTC
Found at i:86764104 original size:14 final size:14
Alignment explanation
Indices: 86764085--86764154 Score: 90
Period size: 14 Copynumber: 4.9 Consensus size: 14
86764075 GGCCTCTCCA
86764085 TTTTTC-TTTTTTC
1 TTTTTCTTTTTTTC
86764098 TTTTTTCTCTTTTTTC
1 -TTTTTCT-TTTTTTC
86764114 TTTTTCTTTTTTTC
1 TTTTTCTTTTTTTC
86764128 TTTTTCTTTTCTTT-
1 TTTTTCTTTT-TTTC
*
86764142 TTTTCCTTTTTTT
1 TTTTTCTTTTTTT
86764155 TGAAATAGAA
Statistics
Matches: 52, Mismatches: 1, Indels: 7
0.87 0.02 0.12
Matches are distributed among these distances:
13 3 0.06
14 32 0.62
15 10 0.19
16 7 0.13
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTCTTTTTTTC
Found at i:86764108 original size:9 final size:8
Alignment explanation
Indices: 86764085--86764154 Score: 67
Period size: 9 Copynumber: 8.6 Consensus size: 8
86764075 GGCCTCTCCA
86764085 TTTTTC-T
1 TTTTTCTT
86764092 TTTTTC-T
1 TTTTTCTT
86764099 TTTTTCTCT
1 TTTTTCT-T
86764108 TTTTTC--
1 TTTTTCTT
86764114 TTTTTCTT
1 TTTTTCTT
86764122 TTTTTCTTTT
1 TTTTTC--TT
86764132 TCTTTTCTT
1 T-TTTTCTT
86764141 TTTTTCCTT
1 TTTTT-CTT
86764150 TTTTT
1 TTTTT
86764155 TGAAATAGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 14
0.80 0.00 0.20
Matches are distributed among these distances:
6 6 0.11
7 13 0.24
8 10 0.18
9 18 0.33
10 3 0.05
11 5 0.09
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:86764122 original size:29 final size:28
Alignment explanation
Indices: 86764085--86764154 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 28
86764075 GGCCTCTCCA
86764085 TTTTTC-TTTTTTCTTTTTTCTCTTT-TTT
1 TTTTTCTTTTTTTC-TTTTTCT-TTTCTTT
86764113 CTTTTTCTTTTTTTCTTTTTCTTTTCTTT
1 -TTTTTCTTTTTTTCTTTTTCTTTTCTTT
*
86764142 TTTTCCTTTTTTT
1 TTTTTCTTTTTTT
86764155 TGAAATAGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
28 15 0.39
29 16 0.42
30 7 0.18
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (28 bp):
TTTTTCTTTTTTTCTTTTTCTTTTCTTT
Found at i:86769343 original size:19 final size:18
Alignment explanation
Indices: 86769268--86769358 Score: 103
Period size: 19 Copynumber: 4.9 Consensus size: 18
86769258 AATCATATCT
*
86769268 TCTAAGTTTGCATATCATA
1 TCTAAGATTGC-TATCATA
* * *
86769287 CCTATGATTGCAATCATA
1 TCTAAGATTGCTATCATA
86769305 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
86769322 TCTAAGATTGCTTATCACA
1 TCTAAGATTGC-TATCATA
86769341 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
86769359 TGAAGATTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
17 16 0.27
18 14 0.23
19 30 0.50
ACGTcount: A:0.33, C:0.18, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:86772668 original size:40 final size:40
Alignment explanation
Indices: 86772624--86772735 Score: 147
Period size: 40 Copynumber: 2.8 Consensus size: 40
86772614 GATACTTGAG
*
86772624 GAAATGTTATCCGGGCTTAAAGACCCGCAGG-TTATATGCT
1 GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTT-CATGCT
*
86772664 GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCT
1 GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
* * * *
86772704 GGAATGTTATCCAGAC-TAGAGACCCGCAGGCT
1 GAAATGTTATCCGGGCTTAAAGACCCGCAGGCT
86772736 ACGAGCTGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
39 15 0.23
40 48 0.74
41 2 0.03
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
GAAATGTTATCCGGGCTTAAAGACCCGCAGGCTTCATGCT
Found at i:86775573 original size:14 final size:15
Alignment explanation
Indices: 86775554--86775679 Score: 92
Period size: 18 Copynumber: 7.5 Consensus size: 15
86775544 TCTTAGATGT
86775554 GATATG-CAATCTTA
1 GATATGACAATCTTA
86775568 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
*
86775585 GATATGATTGAAATCTTA
1 GATATGA---CAATCTTA
*
86775603 GATATGATACAATCATA
1 GATATG--ACAATCTTA
86775620 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
86775638 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
86775655 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
86775673 GATATGA
1 GATATGA
86775680 TATACAATCT
Statistics
Matches: 92, Mismatches: 4, Indels: 28
0.74 0.03 0.23
Matches are distributed among these distances:
14 6 0.07
15 3 0.03
17 40 0.43
18 41 0.45
20 2 0.02
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:86775582 original size:17 final size:17
Alignment explanation
Indices: 86775538--86775693 Score: 197
Period size: 17 Copynumber: 8.8 Consensus size: 17
86775528 CTTCAATGAT
*
86775538 ATACAATCTTAGATGTG
1 ATACAATCTTAGATATG
86775555 ATATGCAATCTTAGATATG
1 ATA--CAATCTTAGATATG
86775574 ATACAATCTTAGATATG
1 ATACAATCTTAGATATG
86775591 ATTGA-AATCTTAGATATG
1 A-T-ACAATCTTAGATATG
*
86775609 ATACAATCATAGATATG
1 ATACAATCTTAGATATG
*
86775626 ATTGCAATCTTAGATATG
1 A-TACAATCTTAGATATG
86775644 ATACAATCTTAGATATG
1 ATACAATCTTAGATATG
*
86775661 ATTGCAATCTTAGATATG
1 A-TACAATCTTAGATATG
86775679 ATATACAATCTTAGA
1 --ATACAATCTTAGA
86775694 AGATATGATT
Statistics
Matches: 123, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
16 1 0.01
17 48 0.39
18 45 0.37
19 28 0.23
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (17 bp):
ATACAATCTTAGATATG
Found at i:86775607 original size:35 final size:35
Alignment explanation
Indices: 86775538--86775693 Score: 258
Period size: 35 Copynumber: 4.4 Consensus size: 35
86775528 CTTCAATGAT
*
86775538 ATACAATCTTAGATGTGATATGCAATCTTAGATATG
1 ATACAATCTTAGATATGAT-TGCAATCTTAGATATG
*
86775574 ATACAATCTTAGATATGATTGAAATCTTAGATATG
1 ATACAATCTTAGATATGATTGCAATCTTAGATATG
*
86775609 ATACAATCATAGATATGATTGCAATCTTAGATATG
1 ATACAATCTTAGATATGATTGCAATCTTAGATATG
86775644 ATACAATCTTAGATATGATTGCAATCTTAGATATG
1 ATACAATCTTAGATATGATTGCAATCTTAGATATG
86775679 ATATACAATCTTAGA
1 --ATACAATCTTAGA
86775694 AGATATGATT
Statistics
Matches: 113, Mismatches: 5, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
35 82 0.73
36 18 0.16
37 13 0.12
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
ATACAATCTTAGATATGATTGCAATCTTAGATATG
Found at i:86780671 original size:790 final size:789
Alignment explanation
Indices: 86779151--86780733 Score: 2812
Period size: 790 Copynumber: 2.0 Consensus size: 789
86779141 GGATTTGCAA
86779151 TTGCCAGAATAAACATGAGGTTTTGGGGCACTGTTGGTCCACCATGAAAAGGGATCGCATCAGTT
1 TTGCCAGAATAAACATGAGGTTTTGGGGCACTGTTGGTCCACCATGAAAAGGGATCGCATCAGTT
86779216 GTACAATGAATGCCAAATTTAAGGGAGTCAAGACTTATGGGGCATGTATGTTATGGGCCCGAGCT
66 GTACAATGAATGCCAAATTTAAGGGAGTCAAGACTTATGGGGCATGTATGTTATGGGCCCGAGCT
* * *
86779281 CGTCAAAAGTTTCAAGCTGACAATGACTCATCTTTGTGGACTTCAATTGCTCCATTAAGAGGGGG
131 CGTCAAAAGTTTCAAGCTGACAATGACTCATCTTTGTGGACGTCAACTACTCCATTAAGAGGGGG
*
86779346 AGATAGCTTCATATGCCAATATTACAAAGTCAAAAGTCATCCATTTCAAAAAAGAAAAGATTATA
196 AGATAGCTTCATATGCCAATATTACAAAGTCAAAAGTCATCCATTTCAAAAAAAAAAAGATTATA
*
86779411 TAACTGCACAATGCCAAAAGTTTGCAGTATTTTCAAAGATAATGCGCCATACCACAGTACAAAAA
261 TAACTGCACAATACCAAAAGTTTGCAGTATTTTCAAAGATAATGCGCCATACCACAGTACAAAAA
* *
86779476 AGGTTTCCAAAAGAAAAGAAAAAGAAGAAAAAAAATTACAGAAGATGACCGAGACTGGTAAAAAT
326 AGGTTGCCAAAAAAAAAGAAAAAGAAGAAAAAAAATTACAGAAGATGACCGAGACTGGTAAAAAT
* *
86779541 TGGCATAAGAAACTACCGCTTACTCTCTATGCTTACGCTGGGGCAAACACCATCAATTCCAGTTG
391 TGGCATAAGAAACTACCGCTTACTCTCTATGCTTACGCTGGGGCAAAAAACATCAATTCCAGTTG
86779606 TTTCAAAGGTTCCAACCACCATCCTTGGAATGGGTGCATTGTCTGGCTTTCCTGAGCAGTCTGAT
456 TTTCAAAGGTTCCAACCACCATCCTTGGAATGGGTGCATTGTCTGGCTTTCCTGAGCAGTCTGAT
*
86779671 GTGCCGTCAATAGCTGCGATGGTTAGCTCCAGGCAGTGGCCATTGATTTCCATCTATGGGGCATC
521 GTGCCGTCAATAGCTGCGATGGTTAGCTCCAGGCAGTGGCCATTGATTTCCAACTATGGGGCATC
86779736 AGGCCGTACACAGTCTCTGAAGCTTAAAATGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAA
586 AGGCCGTACACAGTCTCTGAAGCTTAAAATGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAA
* *
86779801 GTGGATGATGGTACCATGAAGGAAGCTCTTTTAGATTTCTATACAAGTTCAGGGAAGAGGAAACC
651 GTGGATGACGGTACCATGAAGGAAGCTCTCTTAGATTTCTATACAAGTTCAGGGAAGAGGAAACC
86779866 TGATCAAATCATTATTTTCAAGGATGGGGTTAGCGAGTCTCAATTCAATCAAGTTTTGATCAAGT
716 TGATCAAATCATTATTTTCAAGGATGGGGTTAGCGAGTCTCAATTCAATCAAGTTTTGATCAAGT
86779931 TATTGAGGC
781 TATTGAGGC
86779940 TTGCCAGAATAAACATGAGGTTTTGGGGCACTGTTGGTCCACCATGAAAAGGGATCGCATCAGTT
1 TTGCCAGAATAAACATGAGGTTTTGGGGCACTGTTGGTCCACCATGAAAAGGGATCGCATCAGTT
86780005 GTACAATGAATGCCAAATTTAAGGGAGTCAAGACTTATGGGGCATGTATGTTATGGGCCCGAGCT
66 GTACAATGAATGCCAAATTTAAGGGAGTCAAGACTTATGGGGCATGTATGTTATGGGCCCGAGCT
86780070 CGTCAAAAGTTTCAAGCTGACAATGACTCATCTTTGTGGACGTCAACTACTCCATTAAGAGGGGG
131 CGTCAAAAGTTTCAAGCTGACAATGACTCATCTTTGTGGACGTCAACTACTCCATTAAGAGGGGG
86780135 AGATAGCTTCATATGCCAATATTACAAAGTCAAAAGTCATCCATTTCAAAAAAAAAAAGATTATA
196 AGATAGCTTCATATGCCAATATTACAAAGTCAAAAGTCATCCATTTCAAAAAAAAAAAGA-T-TA
* * * * *
86780200 TATAACTGCACAATACCAAAAGTTTGCAGTCTTTTCAAAGATAGTGTGCCATACCACAGTATAAC
259 TATAACTGCACAATACCAAAAGTTTGCAGTATTTTCAAAGATAATGCGCCATACCACAGTACAAA
* ** *
86780265 AAAGGTTGCCAAAAAAAAAG-AGAAGAA-AGAACCAAATTACAGAAGATGATCGAGACTGGTAAA
324 AAAGGTTGCCAAAAAAAAAGAAAAAGAAGA-AAAAAAATTACAGAAGATGACCGAGACTGGTAAA
* *
86780328 AATTGGCATAAGAAACTACCGCTTACTCTCTATGCTTACGCTGGGGCAAAAAACTTCAATTTCAG
388 AATTGGCATAAGAAACTACCGCTTACTCTCTATGCTTACGCTGGGGCAAAAAACATCAATTCCAG
* * * *
86780393 TTGTTTCAAAGGTTCCAACCATCATCCTTGGAATTGGTGCCTTGTTTGGCTTTCCTGAGCAGTCT
453 TTGTTTCAAAGGTTCCAACCACCATCCTTGGAATGGGTGCATTGTCTGGCTTTCCTGAGCAGTCT
*
86780458 GATGTGCCGTCAATAGCTGCGATGGTTAGCAT-CAGGCGGTGGCCATTGATTTCCAACTATGGGG
518 GATGTGCCGTCAATAGCTGCGATGGTTAGC-TCCAGGCAGTGGCCATTGATTTCCAACTATGGGG
***
86780522 CATCAGGCCGTATGTAGTCTCTGAAGCTTAAAATGATAGATTCTTTCTTCAAAACCAGTTTCTGA
582 CATCAGGCCGTACACAGTCTCTGAAGCTTAAAATGATAGATTCTTTCTTCAAAACCAGTTTCTGA
*
86780587 CAAAGTGGATGACGGTATCATGAAGGAAGCTCTCTTAGATTTCTATACAAGTTCAGGGAAGAGGA
647 CAAAGTGGATGACGGTACCATGAAGGAAGCTCTCTTAGATTTCTATACAAGTTCAGGGAAGAGGA
*
86780652 AACCTGATCAAATCATTATTTTCAGGGATGGGGTTAGCGAGTCTCAATTCAATCAAGTTTTGATC
712 AACCTGATCAAATCATTATTTTCAAGGATGGGGTTAGCGAGTCTCAATTCAATCAAGTTTTGATC
86780717 AAGTTATTGAGGC
777 AAGTTATTGAGGC
86780730 TTGC
1 TTGC
86780734 AAGTTCCTTG
Statistics
Matches: 757, Mismatches: 33, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
789 252 0.33
790 425 0.56
791 80 0.11
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (789 bp):
TTGCCAGAATAAACATGAGGTTTTGGGGCACTGTTGGTCCACCATGAAAAGGGATCGCATCAGTT
GTACAATGAATGCCAAATTTAAGGGAGTCAAGACTTATGGGGCATGTATGTTATGGGCCCGAGCT
CGTCAAAAGTTTCAAGCTGACAATGACTCATCTTTGTGGACGTCAACTACTCCATTAAGAGGGGG
AGATAGCTTCATATGCCAATATTACAAAGTCAAAAGTCATCCATTTCAAAAAAAAAAAGATTATA
TAACTGCACAATACCAAAAGTTTGCAGTATTTTCAAAGATAATGCGCCATACCACAGTACAAAAA
AGGTTGCCAAAAAAAAAGAAAAAGAAGAAAAAAAATTACAGAAGATGACCGAGACTGGTAAAAAT
TGGCATAAGAAACTACCGCTTACTCTCTATGCTTACGCTGGGGCAAAAAACATCAATTCCAGTTG
TTTCAAAGGTTCCAACCACCATCCTTGGAATGGGTGCATTGTCTGGCTTTCCTGAGCAGTCTGAT
GTGCCGTCAATAGCTGCGATGGTTAGCTCCAGGCAGTGGCCATTGATTTCCAACTATGGGGCATC
AGGCCGTACACAGTCTCTGAAGCTTAAAATGATAGATTCTTTCTTCAAAACCAGTTTCTGACAAA
GTGGATGACGGTACCATGAAGGAAGCTCTCTTAGATTTCTATACAAGTTCAGGGAAGAGGAAACC
TGATCAAATCATTATTTTCAAGGATGGGGTTAGCGAGTCTCAATTCAATCAAGTTTTGATCAAGT
TATTGAGGC
Found at i:86781696 original size:9 final size:9
Alignment explanation
Indices: 86781681--86781746 Score: 69
Period size: 9 Copynumber: 6.7 Consensus size: 9
86781671 TCTATTTCAA
86781681 AAAAAAAAGG
1 AAAAAAAA-G
86781691 AAAAAAAAG
1 AAAAAAAAG
86781700 AAAAAAAAG
1 AAAAAAAAG
86781709 AAAAAAAAAG
1 -AAAAAAAAG
86781719 AAAATGAAAAAAG
1 --AA--AAAAAAG
*
86781732 AGAAAAAAG
1 AAAAAAAAG
86781741 AAAAAA
1 AAAAAA
86781747 GAAAAATGGA
Statistics
Matches: 50, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
9 22 0.44
10 17 0.34
11 4 0.08
13 7 0.14
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:86781696 original size:10 final size:10
Alignment explanation
Indices: 86781681--86781746 Score: 64
Period size: 10 Copynumber: 6.6 Consensus size: 10
86781671 TCTATTTCAA
86781681 AAAAAAAAGG
1 AAAAAAAAGG
86781691 AAAAAAAA-G
1 AAAAAAAAGG
*
86781700 AAAAAAAAGA
1 AAAAAAAAGG
*
86781710 AAAAAAAAGA
1 AAAAAAAAGG
*
86781720 AAATGAAAAAAG
1 AAA--AAAAAGG
*
86781732 AGAAAAAA-G
1 AAAAAAAAGG
86781741 AAAAAA
1 AAAAAA
86781747 GAAAAATGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
9 15 0.31
10 26 0.54
12 7 0.15
ACGTcount: A:0.85, C:0.00, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAAAAGG
Found at i:86781703 original size:7 final size:7
Alignment explanation
Indices: 86781693--86781752 Score: 63
Period size: 7 Copynumber: 8.7 Consensus size: 7
86781683 AAAAAAGGAA
86781693 AAAAAAG
1 AAAAAAG
86781700 AAAAAA-
1 AAAAAAG
*
86781706 AAGAAA-
1 AAAAAAG
86781712 AAAAAAG
1 AAAAAAG
86781719 AAAATGAA-
1 AAAA--AAG
*
86781727 AAAAGAG
1 AAAAAAG
86781734 AAAAAAG
1 AAAAAAG
86781741 AAAAAAG
1 AAAAAAG
86781748 AAAAA
1 AAAAA
86781753 TGGAGAGGCC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
6 11 0.24
7 28 0.62
8 4 0.09
9 2 0.04
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:86782848 original size:88 final size:87
Alignment explanation
Indices: 86782739--86782989 Score: 323
Period size: 87 Copynumber: 2.9 Consensus size: 87
86782729 AACAGGTTCG
*
86782739 CAGATCTTATCTCCCTAAGCAGTAGCGGAACAGATCGACGACGACTTGCCTTAATCCCCCTAAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGACGACGAC-TGCCTTAATCCCCCTAAGC
*
86782804 AATAGGGTAACAGG-CAAAAATTA
65 AGTAGGGTAACAGGTC-AAAATTA
* * *
86782827 CAGATCTTATCTCCCTAAGCAGTAGTAGAATAGATCAACGACGACTCGCCTTAAT-CCCCTAAGC
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGACGACGACT-GCCTTAATCCCCCTAAGC
* *
86782891 AGTAGGGTGACAGGTCAAAATTG
65 AGTAGGGTAACAGGTCAAAATTA
** * * * *
86782914 TGGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG-C-GCCTTAA-CCCCTTAAGCA
1 CAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGACGACGACTGCCTTAATCCCCCTAAGCA
86782976 GTAGGGTAACAGGT
66 GTAGGGTAACAGGT
86782990 TAAAGCATAG
Statistics
Matches: 143, Mismatches: 17, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
84 29 0.20
86 1 0.01
87 63 0.44
88 50 0.35
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (87 bp):
CAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATCGACGACGACTGCCTTAATCCCCCTAAGCA
GTAGGGTAACAGGTCAAAATTA
Found at i:86783359 original size:207 final size:207
Alignment explanation
Indices: 86782995--86783581 Score: 960
Period size: 207 Copynumber: 2.8 Consensus size: 207
86782985 CAGGTTAAAG
* * *
86782995 CATAGTAGATCTGGCCTTCAGATGTTTATACTTAAGCAAGATCCAAGATGGTTTGGCATCTTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
*
86783060 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCTTACGATGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
*
86783125 TAAGATGATTTGGCATCTCTATATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCAAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCAAC
*
86783190 GGAGGGCAGACA
196 GGAGGACAGACA
*
86783202 CATAGCAGATCTGGCCTTCAGATGTTTATACTGAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
* *
86783267 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAGTC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
86783332 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCAAAGTTTGGCGTCTCCATATTCGAC
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCAAC
86783397 GGAGGACAGACA
196 GGAGGACAGACA
* ** * * * *
86783409 TATAGCAGATCTAACCTTCAGATGATTAGACTAAAG-TAGATCCAAGATGGTTTGGTATCCTTGT
1 CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
** *
86783473 GCTTACAAGGAGTAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGCTGAAGCAAATC
66 GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
* *
86783538 TAAGATGATTTGGCATCTCTGTATTGTCAGGGAACAAATTGAAG
131 TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAG
86783582 AAGTAGATTT
Statistics
Matches: 355, Mismatches: 25, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
206 128 0.36
207 227 0.64
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (207 bp):
CATAGCAGATCTGGCCTTCAGATGTTTATACTAAAGCAAGATCCAAGATGGTTTGGCATCCTTGT
GCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGATGAAGCAAATC
TAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGGCGTCTCCATATTCAAC
GGAGGACAGACA
Found at i:86783986 original size:17 final size:18
Alignment explanation
Indices: 86783973--86784097 Score: 100
Period size: 19 Copynumber: 6.9 Consensus size: 18
86783963 TAATCTTCAA
86783973 TGATATGCAATCTTAGATG
1 TGATATGCAATCTTAGA-G
86783992 TGATATGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
86784009 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
86784028 TGAT-TGCAATCTTAGA-
1 TGATATGCAATCTTAGAG
* *
86784044 T-ATGATACAATCTTAGATA
1 TGAT-ATGCAATCTTAGA-G
*
86784063 TGAT-TGCAATCTTAGATA
1 TGATATGCAATCTTAGA-G
*
86784081 TGATATACAATCTTAGA
1 TGATATGCAATCTTAGA
86784098 AGATATGATT
Statistics
Matches: 91, Mismatches: 5, Indels: 20
0.78 0.04 0.17
Matches are distributed among these distances:
15 2 0.02
16 3 0.03
17 24 0.26
18 28 0.31
19 30 0.33
20 4 0.04
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (18 bp):
TGATATGCAATCTTAGAG
Found at i:86784042 original size:35 final size:35
Alignment explanation
Indices: 86783980--86784097 Score: 200
Period size: 35 Copynumber: 3.3 Consensus size: 35
86783970 CAATGATATG
*
86783980 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
86784016 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
86784051 CAATCTTAGATATGATTGCAATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
86784088 CAATCTTAGA
1 CAATCTTAGA
86784098 AGATATGATT
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 51 0.65
36 15 0.19
37 13 0.16
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:86792904 original size:21 final size:22
Alignment explanation
Indices: 86792878--86792924 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
86792868 CTCTGCTCAA
*
86792878 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
86792899 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
86792921 ACTC
1 ACTC
86792925 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:86798578 original size:25 final size:24
Alignment explanation
Indices: 86798550--86798597 Score: 78
Period size: 25 Copynumber: 2.0 Consensus size: 24
86798540 TTATTAAGTC
86798550 GTACATATAATTTGTTGAAAATATT
1 GTACATATAATTTGTT-AAAATATT
*
86798575 GTACTTATAATTTGTTAAAATAT
1 GTACATATAATTTGTTAAAATAT
86798598 CATTAGGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (24 bp):
GTACATATAATTTGTTAAAATATT
Found at i:86802581 original size:40 final size:40
Alignment explanation
Indices: 86802537--86802760 Score: 246
Period size: 40 Copynumber: 5.6 Consensus size: 40
86802527 GCTACTCGTT
86802537 CAAATGCCTTCGGGA-TATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACT-TAGCCCGGTTATAGTAACTCACA
86802577 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
86802617 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
* * * *
86802657 CCAATGCCTTCGGG-CTTTA-CCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGAC-TTAGCCCGGTTA-TAGTAACTCACA
* * * * *
86802696 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CA
86802737 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
86802761 ACATCATTCG
Statistics
Matches: 159, Mismatches: 14, Indels: 22
0.82 0.07 0.11
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 114 0.72
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:86802715 original size:119 final size:120
Alignment explanation
Indices: 86802539--86802761 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
86802529 TACTCGTTCA
* *
86802539 AATGCCTTCGGGATATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGTT
1 AATGCCTTCGGGATATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
86802604 ATAGTAACTCA-CACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTCAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * * *
86802659 AATGCCTTCGGGCTTTA-CCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGATATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAGCCCGG
* * * *
86802721 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTCAGCACAAAGCCTTCGGGACTTAACCCGGA
86802762 CATCATTCGA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 64 0.72
120 21 0.24
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
AATGCCTTCGGGATATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAACTCAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:86804454 original size:27 final size:28
Alignment explanation
Indices: 86804370--86804467 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
86804360 CATGAGATTG
* * * *
86804370 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
86804399 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
86804427 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
86804454 GCCCTGAGTGTGCG
1 GCACTAAGTGTGCG
86804468 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 23 0.37
28 22 0.35
29 18 0.29
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86804478 original size:27 final size:27
Alignment explanation
Indices: 86804398--86804480 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
86804388 TAAATTGTAC
* *
86804398 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
86804426 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
* *
86804453 AGCCCTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
86804480 A
1 A
86804481 TTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:86804481 original size:29 final size:27
Alignment explanation
Indices: 86804370--86804481 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
86804360 CATGAGATTG
** * *
86804370 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
86804399 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
86804427 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
* *
86804454 GCCCTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
86804482 TTTTGAATCA
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.31
28 28 0.39
29 21 0.30
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:86812402 original size:26 final size:28
Alignment explanation
Indices: 86812320--86812416 Score: 126
Period size: 27 Copynumber: 3.5 Consensus size: 28
86812310 CATGAGATTG
* * * *
86812320 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
86812349 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
86812377 GCACT-AGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
86812403 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86812417 GACTTAATAT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
26 16 0.25
27 18 0.29
28 11 0.17
29 18 0.29
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:86812427 original size:27 final size:26
Alignment explanation
Indices: 86812348--86812428 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 26
86812338 TAAATTGTAC
* *
86812348 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACT-AGTGTGCGA-CTTGAATATAT
* *
86812376 AGCACTAGTGTGCGAGTTGATTATAT
1 AGCACTAGTGTGCGACTTGAATATAT
86812402 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACT-AGTGTGC-GACTTGAATATAT
86812429 TTTTGAATCA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
26 16 0.33
27 22 0.46
28 10 0.21
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.33
Consensus pattern (26 bp):
AGCACTAGTGTGCGACTTGAATATAT
Found at i:86813918 original size:15 final size:16
Alignment explanation
Indices: 86813900--86813939 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
86813890 AATTGGAAAG
86813900 ATGAAAAGTT-ATTAA
1 ATGAAAAGTTAATTAA
*
86813915 ATGAAAATTTAATTAA
1 ATGAAAAGTTAATTAA
86813931 ATGTAAAAG
1 ATG-AAAAG
86813940 AAAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 8 0.38
17 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (16 bp):
ATGAAAAGTTAATTAA
Found at i:86817060 original size:16 final size:16
Alignment explanation
Indices: 86817039--86817069 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
86817029 GGGTGGCGTG
*
86817039 TGCGGCATACGCCGTA
1 TGCGGCACACGCCGTA
86817055 TGCGGCACACGCCGT
1 TGCGGCACACGCCGT
86817070 GTGACAGCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.35, G:0.32, T:0.16
Consensus pattern (16 bp):
TGCGGCACACGCCGTA
Found at i:86818091 original size:22 final size:21
Alignment explanation
Indices: 86818065--86818127 Score: 67
Period size: 22 Copynumber: 3.0 Consensus size: 21
86818055 TCGAAATACT
86818065 AACAGAGGCACCGTAGTGCAA
1 AACAGAGGCACCGTAGTGCAA
86818086 ATACAGAGGCACC-TAAGTG-AA
1 A-ACAGAGGCACCGT-AGTGCAA
** *
86818107 AATTGAGGCACCGAAGTGCAA
1 AACAGAGGCACCGTAGTGCAA
86818128 TCTCATACAA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
20 13 0.37
21 7 0.20
22 15 0.43
ACGTcount: A:0.40, C:0.21, G:0.27, T:0.13
Consensus pattern (21 bp):
AACAGAGGCACCGTAGTGCAA
Found at i:86838339 original size:15 final size:15
Alignment explanation
Indices: 86838319--86838354 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
86838309 TATTGACTGG
86838319 TTAGGTCTTAATTGA
1 TTAGGTCTTAATTGA
*
86838334 TTAGGTCTTGATTGA
1 TTAGGTCTTAATTGA
86838349 TTAGGT
1 TTAGGT
86838355 AACTGATCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.22, C:0.06, G:0.25, T:0.47
Consensus pattern (15 bp):
TTAGGTCTTAATTGA
Done.