Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 272 of 295
Found at i:86840228 original size:27 final size:27
Alignment explanation
Indices: 86840134--86840310 Score: 133
Period size: 27 Copynumber: 6.5 Consensus size: 27
86840124 AAATTGTACA
* * *
86840134 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* * *
86840161 GCACTAAGTGTGCAAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
86840188 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
86840215 GCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGC-GAATTGACTATGTG
* * *
86840243 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * * *
86840270 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
86840297 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86840311 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
27 95 0.79
28 25 0.21
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:86840256 original size:55 final size:54
Alignment explanation
Indices: 86840188--86840310 Score: 147
Period size: 55 Copynumber: 2.3 Consensus size: 54
86840178 TGAATATGAT
* * * *
86840188 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACTAAATGTGCGAG-TTGACTATATA
* ** * *
86840243 GCACTAAGTGTGCGATTTGATTACGTGGCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACTAAATGTGCGAGTTGACTATATA
*
86840297 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86840311 GGCTCAATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
54 22 0.38
55 36 0.62
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCGGCACTAAATGTGCGAGTTGACTATATA
Found at i:86848146 original size:27 final size:26
Alignment explanation
Indices: 86848116--86848291 Score: 136
Period size: 27 Copynumber: 6.5 Consensus size: 26
86848106 AAATTGTACA
* *
86848116 GCACTAAGTGTGCGATTCTACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
86848143 GCACTAAGTGTGCGAATGAATATGAT
1 GCACTAAGTGTGCGATTGACTATGTT
* **
86848169 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
86848196 GCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGC--GATTGACTATGTT
* * *
86848224 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * * *
86848251 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
86848278 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86848292 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 25, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
26 20 0.17
27 78 0.65
28 21 0.17
29 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:86848237 original size:55 final size:54
Alignment explanation
Indices: 86848143--86848291 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
86848133 CTACTTTGTT
* * * *
86848143 GCACTAAGTGTGCGA-ATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
86848196 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
86848251 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
86848292 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
53 14 0.18
54 23 0.29
55 42 0.53
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:86851551 original size:23 final size:23
Alignment explanation
Indices: 86851464--86851551 Score: 88
Period size: 23 Copynumber: 3.8 Consensus size: 23
86851454 GATATATTAG
* *
86851464 CTCGTAAGAGCTTACTGTTCTCAC
1 CTCGTCAGAGCTTACTGTT-TCAA
* * * *
86851488 CTC-TTATGAGATTACTGGTTCAT
1 CTCGTCA-GAGCTTACTGTTTCAA
*
86851511 CTCGTCAAAGCTTACTGTTTCAA
1 CTCGTCAGAGCTTACTGTTTCAA
86851534 CTCGTCAGAGCTTACTGT
1 CTCGTCAGAGCTTACTGT
86851552 GCATCAGCTC
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
23 37 0.71
24 15 0.29
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (23 bp):
CTCGTCAGAGCTTACTGTTTCAA
Found at i:86852886 original size:43 final size:41
Alignment explanation
Indices: 86852839--86852924 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 41
86852829 TGATATTTGA
86852839 ATATGAATGCATAAATGTACGAATTGTAGGTTAAATGATGTGT
1 ATATGAATGCATAAATGTACGAATTGTAGGTT-AA-GATGTGT
*
86852882 ATATGAATGCATAAATGTATGAATTGTAGGTTAAGATGTGT
1 ATATGAATGCATAAATGTACGAATTGTAGGTTAAGATGTGT
86852923 AT
1 AT
86852925 TGATCGATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
41 9 0.21
42 2 0.05
43 31 0.74
ACGTcount: A:0.37, C:0.03, G:0.23, T:0.36
Consensus pattern (41 bp):
ATATGAATGCATAAATGTACGAATTGTAGGTTAAGATGTGT
Found at i:86856657 original size:41 final size:43
Alignment explanation
Indices: 86856561--86856685 Score: 132
Period size: 43 Copynumber: 2.9 Consensus size: 43
86856551 AACGTCCTGG
* * *
86856561 ACATGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAG
1 ACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAA
* *
86856604 ACAGGGTCTTACACGAAATCAAAT-T-GATGTCGA-TGTCCCAA
1 ACATGGTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAA
* *
86856645 ACATGGTATTACACGTAAATCATAA-ATCGATGCCAATGTCC
1 ACATGGTCTTACACG-AAATCA-AATATCGATGCCACTGTCC
86856686 TCGATGTGGT
Statistics
Matches: 68, Mismatches: 8, Indels: 11
0.78 0.09 0.13
Matches are distributed among these distances:
41 24 0.35
42 9 0.13
43 26 0.38
44 9 0.13
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (43 bp):
ACATGGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAA
Found at i:86857450 original size:19 final size:18
Alignment explanation
Indices: 86857418--86857456 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
86857408 ACTAAGCAAG
86857418 ATTACAAAAACGAA-AAA
1 ATTACAAAAACGAACAAA
86857435 ATTATCAAAAATCGAACAAA
1 ATTA-CAAAAA-CGAACAAA
86857455 AT
1 AT
86857457 ACATACCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 6 0.32
19 4 0.21
20 5 0.26
ACGTcount: A:0.64, C:0.13, G:0.05, T:0.18
Consensus pattern (18 bp):
ATTACAAAAACGAACAAA
Found at i:86871425 original size:27 final size:27
Alignment explanation
Indices: 86871334--86871509 Score: 133
Period size: 27 Copynumber: 6.5 Consensus size: 27
86871324 AAATTGTACA
* * *
86871334 GCACTAAGTGTGCG-ATTCTACTTTGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
86871361 GCACTAAGTGTGC-AAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
86871387 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
** *
86871414 GCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGC-GAATTGACTATGTG
* * *
86871442 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * * *
86871469 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTG
*
86871496 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86871510 GGCTCAATAT
Statistics
Matches: 120, Mismatches: 24, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 17 0.14
27 81 0.68
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:86871454 original size:55 final size:54
Alignment explanation
Indices: 86871387--86871509 Score: 147
Period size: 55 Copynumber: 2.3 Consensus size: 54
86871377 TGAATATGAT
* * * *
86871387 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGGGTTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACTAAATGTGCGAG-TTGACTATATA
* ** * *
86871442 GCACTAAGTGTGCGATTTGATTACGTGGCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACTAAATGTGCGAGTTGACTATATA
*
86871496 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
86871510 GGCTCAATAT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
54 22 0.38
55 36 0.62
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCGGCACTAAATGTGCGAGTTGACTATATA
Found at i:86879451 original size:55 final size:54
Alignment explanation
Indices: 86879356--86879505 Score: 149
Period size: 55 Copynumber: 2.8 Consensus size: 54
86879346 CTACTTTGTT
* ** * *
86879356 GCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAATGTGCGAGTTGACTAT-ATAGCACTAAGTGTGCGAATTGACCACGCG
* * * * ** *
86879410 GCACTAAGTGTGCGGGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAATGTGCGAG-TTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
* *
86879465 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCG
86879506 GGCTCAATAT
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 37 0.47
55 42 0.53
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAATGTGCGAGTTGACTATATAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:86879468 original size:27 final size:27
Alignment explanation
Indices: 86879328--86879505 Score: 146
Period size: 27 Copynumber: 6.6 Consensus size: 27
86879318 TAAATTGTAC
86879328 AGCACTAAGTGTGCGATTCT-ACTT-TGT
1 AGCACTAAGTGTGCGATT-TGA-TTATGT
* ** *
86879355 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
86879381 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* * *
86879409 GGCACTAAGTGTGCGGGTTTGACTATGT
1 AGCACTAAGTGTGC-GATTTGATTATGT
*
86879437 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* * * *
86879464 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
86879491 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86879506 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 97 0.80
28 22 0.18
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:86879469 original size:82 final size:81
Alignment explanation
Indices: 86879329--86879484 Score: 190
Period size: 82 Copynumber: 1.9 Consensus size: 81
86879319 AAATTGTACA
* * * *
86879329 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
86879394 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
* ** *
86879410 GCACTAAGTGTGCGGGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGC-GATTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
86879473 TGTGCGAGTTGA
63 TGTGCGAATTGA
86879485 TTATATAGCA
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:86881422 original size:19 final size:19
Alignment explanation
Indices: 86881398--86881435 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
86881388 GTATGCATGA
86881398 CTCGTTACTTTGATGTAAG
1 CTCGTTACTTTGATGTAAG
86881417 CTCGTTACTTTGATGTAAG
1 CTCGTTACTTTGATGTAAG
86881436 TAAAAGCCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (19 bp):
CTCGTTACTTTGATGTAAG
Found at i:86881756 original size:21 final size:22
Alignment explanation
Indices: 86881723--86881772 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
86881713 TATCGTATGT
* *
86881723 TACAATACATAAACACTTAGTG
1 TACAATTCATAAACAATTAGTG
*
86881745 TA-AATTCATAAACAATTGGTG
1 TACAATTCATAAACAATTAGTG
86881766 TACAATT
1 TACAATT
86881773 TTTTTCAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (22 bp):
TACAATTCATAAACAATTAGTG
Found at i:86884635 original size:28 final size:29
Alignment explanation
Indices: 86884595--86884654 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
86884585 AATTTTTAGT
* *
86884595 AAAAATGTCTATT-AGGGATTCAATTGTG
1 AAAAATGTATATTGAGGGATTCAAATGTG
* * *
86884623 AAAAGTGTATATTGAGGGGTTGAAATGTG
1 AAAAATGTATATTGAGGGATTCAAATGTG
86884652 AAA
1 AAA
86884655 TAAATGAAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.38, C:0.03, G:0.27, T:0.32
Consensus pattern (29 bp):
AAAAATGTATATTGAGGGATTCAAATGTG
Found at i:86888451 original size:15 final size:15
Alignment explanation
Indices: 86888431--86888495 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
86888421 GTATCTTGGG
86888431 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
* *
86888446 TTTCTTTATTTTGGG
1 TTTCTTTATTCTGGA
86888461 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
86888476 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
86888490 TTTCTT
1 TTTCTT
86888496 GTTATCTTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
14 11 0.27
15 26 0.63
16 4 0.10
ACGTcount: A:0.09, C:0.12, G:0.14, T:0.65
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86888462 original size:30 final size:30
Alignment explanation
Indices: 86888426--86888485 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 30
86888416 GTATCGTATC
86888426 TTGGGTTTCTT-TAT-TCTGGATTTCTTTATT
1 TTGGGTTT-TTCTATCT-TGGATTTCTTTATT
86888456 TTGGGTTTTTCTATCTTGGATTTCTTTATT
1 TTGGGTTTTTCTATCTTGGATTTCTTTATT
86888486 CGGTTTTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
29 2 0.07
30 25 0.89
31 1 0.04
ACGTcount: A:0.10, C:0.10, G:0.17, T:0.63
Consensus pattern (30 bp):
TTGGGTTTTTCTATCTTGGATTTCTTTATT
Found at i:86889052 original size:32 final size:32
Alignment explanation
Indices: 86889011--86889075 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
86889001 GCTTATACAG
86889011 AAAGAATTGTATGAAGCTCACAGTGAAAATTT
1 AAAGAATTGTATGAAGCTCACAGTGAAAATTT
86889043 AAAGAATTGTATGAAGCTCACAGTGAAAATTT
1 AAAGAATTGTATGAAGCTCACAGTGAAAATTT
86889075 A
1 A
86889076 CCTATTCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.28
Consensus pattern (32 bp):
AAAGAATTGTATGAAGCTCACAGTGAAAATTT
Found at i:86902398 original size:37 final size:37
Alignment explanation
Indices: 86902348--86902497 Score: 255
Period size: 37 Copynumber: 4.1 Consensus size: 37
86902338 CTTTAGCTCA
* *
86902348 GACAAAATCTCCACACGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
86902385 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
* *
86902422 GACATAATCTTCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
86902459 GACATAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
86902496 GA
1 GA
86902498 ATATATTTCC
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 108 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:86902762 original size:47 final size:47
Alignment explanation
Indices: 86902702--86902886 Score: 289
Period size: 47 Copynumber: 3.9 Consensus size: 47
86902692 TACATATATT
* * * *
86902702 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
86902749 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
86902796 TCACATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
**
86902843 TCACATTGGCCATTCGGCCTTATCACATATATGCACATTCACAT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACAT
86902887 CACAATTATC
Statistics
Matches: 126, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 126 1.00
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86902822 original size:22 final size:22
Alignment explanation
Indices: 86902795--86902870 Score: 64
Period size: 22 Copynumber: 3.3 Consensus size: 22
86902785 GCTCACATTC
86902795 ATCACATTGGCCATTTGGCCTT
1 ATCACATTGGCCATTTGGCCTT
* ** *
86902817 ATCACATATATG-CATGTTCACATT
1 ATCACAT-T-GGCCAT-TTGGCCTT
*
86902841 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTTGGCCTT
86902864 ATCACAT
1 ATCACAT
86902871 ATATGCACAT
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 14 0.35
23 9 0.22
24 10 0.25
25 7 0.17
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTTGGCCTT
Found at i:86917849 original size:18 final size:19
Alignment explanation
Indices: 86917828--86917864 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
86917818 AAATTTAAAT
86917828 ATTAAA-TTAAACATCAAA
1 ATTAAATTTAAACATCAAA
*
86917846 ATTAAATTTAAATATCAAA
1 ATTAAATTTAAACATCAAA
86917865 TAATATATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAATTTAAACATCAAA
Found at i:86919095 original size:83 final size:82
Alignment explanation
Indices: 86918896--86919124 Score: 336
Period size: 81 Copynumber: 2.8 Consensus size: 82
86918886 AGATGCTCCT
* * *
86918896 GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAACAATTGCCAGGTTGTTTATAAAAT
1 GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAAT
86918961 CCTACACTGTTATTATA
66 CCTACACTGTTATTATA
* * *
86918978 -TGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTTAATAATTGTCAAGTTGTTTATAAACT
1 GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAAT
86919042 CCTACACTGTT-TTGATA
66 CCTACACTGTTATT-ATA
* * * *
86919059 CGAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTCAATAATTGTAAAGTTTTTTATCAAA
1 -GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAA
86919124 T
65 T
86919125 AATAATTGTA
Statistics
Matches: 132, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
80 2 0.02
81 72 0.55
83 58 0.44
ACGTcount: A:0.41, C:0.08, G:0.17, T:0.34
Consensus pattern (82 bp):
GAGTAAAATGAGACAAATATATGGTAAGTATAAGAGTTAAATAATTGTCAAGTTGTTTATAAAAT
CCTACACTGTTATTATA
Found at i:86921470 original size:13 final size:13
Alignment explanation
Indices: 86921452--86921478 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
86921442 TACTTATGAG
86921452 AACAAAAATTTCT
1 AACAAAAATTTCT
86921465 AACAAAAATTTCT
1 AACAAAAATTTCT
86921478 A
1 A
86921479 TTTCAGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
AACAAAAATTTCT
Found at i:86925237 original size:5 final size:5
Alignment explanation
Indices: 86925229--86925253 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
86925219 TATTATATCG
86925229 AATCA AATCA AATCA AATCA AATCA
1 AATCA AATCA AATCA AATCA AATCA
86925254 TAGCATAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AATCA
Found at i:86925846 original size:49 final size:49
Alignment explanation
Indices: 86925793--86925888 Score: 122
Period size: 49 Copynumber: 2.0 Consensus size: 49
86925783 CTACCACACA
* * * * *
86925793 GCCTGCAAAG-TTTCACATGGTCTTGTGCTCCACACGGCCACGCCACATG
1 GCCTGC-AAGCTTTCACACGGCCCTGTGCTCCACACAGCCAAGCCACATG
*
86925842 GCCTGCAAGCTTTCACACGGCCCTGTGCTCCATACAGCCAAGCCACA
1 GCCTGCAAGCTTTCACACGGCCCTGTGCTCCACACAGCCAAGCCACA
86925889 AAGCCTACAG
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
48 3 0.08
49 37 0.93
ACGTcount: A:0.22, C:0.38, G:0.21, T:0.20
Consensus pattern (49 bp):
GCCTGCAAGCTTTCACACGGCCCTGTGCTCCACACAGCCAAGCCACATG
Found at i:86931383 original size:26 final size:26
Alignment explanation
Indices: 86931347--86931402 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
86931337 TGAAATTCCA
86931347 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86931373 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
86931399 ATCA
1 ATCA
86931403 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86936420 original size:32 final size:34
Alignment explanation
Indices: 86936384--86936448 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
86936374 TAACAGTGAT
*
86936384 ACTGGGCCAGAG-CCCTT-TTCAGATTACAATAA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
**
86936416 ACTGGGCCTTAGCCCCTTATTCAGATAACAATA
1 ACTGGGCCAGAGCCCCTTATTCAGATAACAATA
86936449 TGGCCCATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 10 0.36
33 5 0.18
34 13 0.46
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (34 bp):
ACTGGGCCAGAGCCCCTTATTCAGATAACAATAA
Found at i:86936786 original size:26 final size:26
Alignment explanation
Indices: 86936757--86936809 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
86936747 TCAAACATGC
86936757 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
86936783 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
86936809 A
1 A
86936810 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:86938334 original size:26 final size:26
Alignment explanation
Indices: 86938298--86938403 Score: 203
Period size: 26 Copynumber: 4.1 Consensus size: 26
86938288 TGAAATTCCA
86938298 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86938324 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
86938350 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86938376 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
86938402 AT
1 AT
86938404 GAATTTGTAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.36, C:0.26, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:86940511 original size:30 final size:30
Alignment explanation
Indices: 86940469--86940534 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
86940459 TGTAGTATAA
*
86940469 CATATCAGATCAAACCATAGCATATCATAT
1 CATATCAGATCAAACCATAGCATAACATAT
**
86940499 CATATC-GAATCAAATTATAGCATAACATAT
1 CATATCAG-ATCAAACCATAGCATAACATAT
86940529 CATATC
1 CATATC
86940535 CTACTCCCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (30 bp):
CATATCAGATCAAACCATAGCATAACATAT
Found at i:86945813 original size:32 final size:32
Alignment explanation
Indices: 86945772--86945841 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 32
86945762 CCTAGCACAC
*
86945772 GCCCATGTGGCCCACACT-ATCCAATTAACCCA
1 GCCCATGTGGCCCACA-TGACCCAATTAACCCA
86945804 GCCCATGTGGCCCACATGACCCAATTAACCCA
1 GCCCATGTGGCCCACATGACCCAATTAACCCA
*
86945836 ACCCAT
1 GCCCAT
86945842 ATGGGTCACG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 1 0.03
32 34 0.97
ACGTcount: A:0.29, C:0.41, G:0.13, T:0.17
Consensus pattern (32 bp):
GCCCATGTGGCCCACATGACCCAATTAACCCA
Found at i:86947281 original size:32 final size:33
Alignment explanation
Indices: 86947203--86947297 Score: 120
Period size: 33 Copynumber: 2.9 Consensus size: 33
86947193 TTTTGTTTTA
* * *
86947203 TGTTTACTATCCTAGCAAACTATCTATGTTCTG
1 TGTTTACTATCCCAACAGACTATCTATGTTCTG
*
86947236 TGTTTACTATCCCAACAGACTATCTTTGTTCTG
1 TGTTTACTATCCCAACAGACTATCTATGTTCTG
* * *
86947269 TG-TTACTGTCCCAACAGACTTTCTCTGTT
1 TGTTTACTATCCCAACAGACTATCTATGTT
86947298 GATTCCATGG
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 24 0.44
33 31 0.56
ACGTcount: A:0.21, C:0.24, G:0.13, T:0.42
Consensus pattern (33 bp):
TGTTTACTATCCCAACAGACTATCTATGTTCTG
Found at i:86953485 original size:57 final size:56
Alignment explanation
Indices: 86953416--86953557 Score: 178
Period size: 57 Copynumber: 2.5 Consensus size: 56
86953406 GCCATGAGGG
*
86953416 CGTCCTTTAACAGAGATAGCCACAAAGGAATCTATTTAACAGAGATAGCCACAAATGT
1 CGTCCTTTAACAGAGATAGCCACAAAGGAAT-TATTTAACAGAGATAGCCAAAAAT-T
* * * *
86953474 -GTCCTTTAACAGAGATAGCCATAAAGGCATTCTTTAATAGAGATAGCCAAAAATT
1 CGTCCTTTAACAGAGATAGCCACAAAGGAATTATTTAACAGAGATAGCCAAAAATT
* * *
86953529 CATCCATTCAACAAAGATAGCCACAAAGG
1 CGTCC-TTTAACAGAGATAGCCACAAAGG
86953558 CTCACTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
55 1 0.01
56 24 0.33
57 48 0.66
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (56 bp):
CGTCCTTTAACAGAGATAGCCACAAAGGAATTATTTAACAGAGATAGCCAAAAATT
Found at i:86953490 original size:28 final size:28
Alignment explanation
Indices: 86953418--86953557 Score: 138
Period size: 28 Copynumber: 4.9 Consensus size: 28
86953408 CATGAGGGCG
*
86953418 TCCTTTAACAGAGATAGCCACAAAGGAA
1 TCCTTTAACAGAGATAGCCACAAAGGTA
* * *
86953446 TCTATTTAACAGAGATAGCCACAAATGTG
1 TC-CTTTAACAGAGATAGCCACAAAGGTA
* *
86953475 TCCTTTAACAGAGATAGCCATAAAGGCA
1 TCCTTTAACAGAGATAGCCACAAAGGTA
* * **
86953503 TTCTTTAATAGAGATAGCCA-AAAATTCA
1 TCCTTTAACAGAGATAGCCACAAAGGT-A
* *
86953531 TCCATTCAACAAAGATAGCCACAAAGG
1 TCC-TTTAACAGAGATAGCCACAAAGG
86953558 CTCACTTTTA
Statistics
Matches: 88, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
27 3 0.03
28 44 0.50
29 38 0.43
30 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (28 bp):
TCCTTTAACAGAGATAGCCACAAAGGTA
Found at i:86958047 original size:6 final size:6
Alignment explanation
Indices: 86957995--86958046 Score: 86
Period size: 6 Copynumber: 8.7 Consensus size: 6
86957985 ATATTTTCTC
* *
86957995 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT GTATAT
1 ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT ATATGT
86958043 ATAT
1 ATAT
86958047 AGCGAGGGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (6 bp):
ATATGT
Found at i:86970401 original size:33 final size:33
Alignment explanation
Indices: 86970364--86970430 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
86970354 AAACAAAATG
*
86970364 ACATAGCTTGATTTTAGGACTAAAAGATGAAAA
1 ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
86970397 ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
1 ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
86970430 A
1 A
86970431 TGTAGAAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.48, C:0.09, G:0.16, T:0.27
Consensus pattern (33 bp):
ACATAGCTTGATTTTAAGACTAAAAGATGAAAA
Found at i:86972029 original size:84 final size:84
Alignment explanation
Indices: 86971879--86972095 Score: 256
Period size: 84 Copynumber: 2.6 Consensus size: 84
86971869 AAAGTCAATA
** * * *
86971879 CAATGAAAAGTAAACAGACTTCTACACCTGGGTCTCTAAATGCAATGAAAAGTGAATAGACTTCT
1 CAATGAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGCAATGAAAAGTGAATAGACCTCT
* *
86971944 ACACCTGGGTCTTTAGATG
66 ACACCTGGGTCTCTAAATG
* * *
86971963 CAATGAAAAGTGAATGGACCTCTACACCTAGGTCTCTAGATGCAATGAAAAGTGAATGGACCTCT
1 CAATGAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGCAATGAAAAGTGAATAGACCTCT
* *
86972028 ACACTTGGGTCTCTAAATT
66 ACACCTGGGTCTCTAAATG
* * * * * *
86972047 CAACGAAAAGTAAATGCATCTCTATACGTAGG-CATCTAAATGAAATGAA
1 CAATGAAAAGTAAATGGACCTCTACACCTAGGTC-TCTAAATGCAATGAA
86972096 TGTTTTCTTT
Statistics
Matches: 112, Mismatches: 20, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
83 1 0.01
84 111 0.99
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (84 bp):
CAATGAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGCAATGAAAAGTGAATAGACCTCT
ACACCTGGGTCTCTAAATG
Found at i:86972070 original size:42 final size:42
Alignment explanation
Indices: 86971879--86972062 Score: 242
Period size: 42 Copynumber: 4.4 Consensus size: 42
86971869 AAAGTCAATA
* ** *
86971879 CAATGAAAAGTAAACAGACTTCTACACCTGGGTCTCTAAATG
1 CAATGAAAAGTGAATGGACCTCTACACCTGGGTCTCTAAATG
* * * *
86971921 CAATGAAAAGTGAATAGACTTCTACACCTGGGTCTTTAGATG
1 CAATGAAAAGTGAATGGACCTCTACACCTGGGTCTCTAAATG
* *
86971963 CAATGAAAAGTGAATGGACCTCTACACCTAGGTCTCTAGATG
1 CAATGAAAAGTGAATGGACCTCTACACCTGGGTCTCTAAATG
* *
86972005 CAATGAAAAGTGAATGGACCTCTACACTTGGGTCTCTAAATT
1 CAATGAAAAGTGAATGGACCTCTACACCTGGGTCTCTAAATG
* *
86972047 CAACGAAAAGTAAATG
1 CAATGAAAAGTGAATG
86972063 CATCTCTATA
Statistics
Matches: 128, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 128 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (42 bp):
CAATGAAAAGTGAATGGACCTCTACACCTGGGTCTCTAAATG
Found at i:86972528 original size:21 final size:20
Alignment explanation
Indices: 86972502--86972547 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
86972492 CTCTCTTTAT
86972502 TTTTTTGGTTTCTTTTTTGTC
1 TTTTTTGGTTTC-TTTTTGTC
*
86972523 TTTTTTGTTTTCTTTTTGT-
1 TTTTTTGGTTTCTTTTTGTC
86972542 TTTTTT
1 TTTTTT
86972548 TTCATTTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 7 0.29
21 11 0.46
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.83
Consensus pattern (20 bp):
TTTTTTGGTTTCTTTTTGTC
Found at i:86972549 original size:21 final size:21
Alignment explanation
Indices: 86972501--86972548 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
86972491 TCTCTCTTTA
86972501 TTTTTTTGGTTTCTTTTTTGT
1 TTTTTTTGGTTTCTTTTTTGT
* *
86972522 CTTTTTTGTTTTC-TTTTTGT
1 TTTTTTTGGTTTCTTTTTTGT
86972542 TTTTTTT
1 TTTTTTT
86972549 TCATTTTTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.83
Consensus pattern (21 bp):
TTTTTTTGGTTTCTTTTTTGT
Found at i:86972555 original size:17 final size:17
Alignment explanation
Indices: 86972524--86972556 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
86972514 TTTTTTGTCT
86972524 TTTTTGTTTTCTTTTTG
1 TTTTTGTTTTCTTTTTG
86972541 TTTTT-TTTTCATTTTT
1 TTTTTGTTTTC-TTTTT
86972557 CTAGATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.03, C:0.06, G:0.06, T:0.85
Consensus pattern (17 bp):
TTTTTGTTTTCTTTTTG
Found at i:86978428 original size:55 final size:54
Alignment explanation
Indices: 86978302--86978495 Score: 250
Period size: 55 Copynumber: 3.6 Consensus size: 54
86978292 GTAAGATAAT
* * *
86978302 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
* * *
86978356 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC-AAG
* * *
86978412 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
*
86978464 GATACCACT-TAAGACCATGTCAAGACATGGCA
1 GATACCA-TGTAAGACCATGCCAAGACATGGCA
86978496 ATGGTAAGTT
Statistics
Matches: 123, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
52 4 0.03
53 32 0.26
54 40 0.33
55 43 0.35
56 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGCAAG
Found at i:86978521 original size:108 final size:109
Alignment explanation
Indices: 86978307--86978517 Score: 302
Period size: 108 Copynumber: 2.0 Consensus size: 109
86978297 ATAATGATAT
*
86978307 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
* * * * *
86978372 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAAGGTCC
* * *
86978416 CATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACT-TAAGAC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCA-TGTAAGAC
*
86978479 CATGTCAAGACATGGCAATGGTAAGTT-CGAAAAGGAAAA
65 CATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAA
86978518 AGGTTCCCGA
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
107 9 0.10
108 45 0.49
109 37 0.41
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCAATGATAAGTTACGAAAAGGAAAAGGTCC
Found at i:86983811 original size:4 final size:4
Alignment explanation
Indices: 86983802--86983842 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
86983792 GAACAAATAG
*
86983802 ATGA ATGA ATGA ATGA ATGA ACGA ATGA ATGA ATGA ATGA A
1 ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA ATGA A
86983843 ATTAGGGCAC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.51, C:0.02, G:0.24, T:0.22
Consensus pattern (4 bp):
ATGA
Found at i:86984720 original size:31 final size:31
Alignment explanation
Indices: 86984677--86984740 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
86984667 CCTTTTCATA
*
86984677 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
* **
86984708 TTTCATATTTCATATTACTAGGCCGAAGCCT
1 TTTCATAATTCATAACACTAGGCCGAAGCCT
86984739 TT
1 TT
86984741 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCATAATTCATAACACTAGGCCGAAGCCT
Found at i:86985009 original size:23 final size:24
Alignment explanation
Indices: 86984933--86985076 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
86984923 GCTTTATCAT
*
86984933 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
86984958 ATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTA
86984983 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86985006 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
86985030 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
86985054 ATAACTAGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
86985077 GCACTTCCTC
Statistics
Matches: 112, Mismatches: 2, Indels: 11
0.90 0.02 0.09
Matches are distributed among these distances:
23 24 0.21
24 57 0.51
25 25 0.22
26 6 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:86985148 original size:9 final size:9
Alignment explanation
Indices: 86985134--86985190 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
86985124 ATCTCGTGTG
86985134 CATATCATA
1 CATATCATA
*
86985143 CATATCATGTG
1 CATATCA--TA
86985154 CATATCATA
1 CATATCATA
* *
86985163 CATGTCATGTG
1 CATATCA--TA
86985174 CATATCATA
1 CATATCATA
86985183 CATATCAT
1 CATATCAT
86985191 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:86985153 original size:20 final size:20
Alignment explanation
Indices: 86985130--86985192 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
86985120 GAACATCTCG
86985130 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
86985150 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
86985170 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
86985190 TGT
1 TGT
86985193 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:86985257 original size:25 final size:25
Alignment explanation
Indices: 86985229--86985276 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
86985219 ATATATAAAC
* * *
86985229 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
86985254 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
86985277 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:86989060 original size:20 final size:20
Alignment explanation
Indices: 86989035--86989073 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
86989025 CAATCTCAGT
*
86989035 AAAAAA-GATAAATTCAAATG
1 AAAAAATGAGAAATT-AAATG
86989055 AAAAAATGAGAAATTAAAT
1 AAAAAATGAGAAATTAAAT
86989074 CATAAAGCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.21
Consensus pattern (20 bp):
AAAAAATGAGAAATTAAATG
Found at i:86993663 original size:6 final size:6
Alignment explanation
Indices: 86993652--86993692 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
86993642 AAGATAAAAG
86993652 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAA
1 ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAAC ATAAA
86993693 AAAAATCAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.68, C:0.15, G:0.00, T:0.17
Consensus pattern (6 bp):
ATAAAC
Found at i:87006007 original size:24 final size:25
Alignment explanation
Indices: 87005979--87006025 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
87005969 ATAAATATAA
87005979 AACATTAAA-ATA-AAGTGTATAATT
1 AACATTAAATATATAA-TGTATAATT
87006003 AACATTAAATATATAATGTATAA
1 AACATTAAATATATAATGTATAA
87006026 ATACAAGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 9 0.43
25 10 0.48
26 2 0.10
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
AACATTAAATATATAATGTATAATT
Found at i:87006932 original size:15 final size:16
Alignment explanation
Indices: 87006902--87006941 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
87006892 GCCTATGGCC
87006902 AAAAAA-AAAGATAAA
1 AAAAAAGAAAGATAAA
*
87006917 AGAAAAGAAAGA-AAA
1 AAAAAAGAAAGATAAA
87006932 AAAAAAGAAA
1 AAAAAAGAAA
87006942 TAGAATGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (16 bp):
AAAAAAGAAAGATAAA
Found at i:87007078 original size:3 final size:3
Alignment explanation
Indices: 87007070--87007101 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
87007060 GTAAAAAATG
87007070 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
87007102 GTAGTAGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:87008073 original size:29 final size:27
Alignment explanation
Indices: 87008048--87008109 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
87008038 TATATTTTTT
*
87008048 AATAATTTTAATGATTTTTAAAATTTTAA
1 AATAATTTTAAT-AATTTT-AAATTTTAA
*
87008077 AATAATTTTTATAATTTTAAATTTTAA
1 AATAATTTTAATAATTTTAAATTTTAA
87008104 AA-AATT
1 AATAATT
87008110 AATTAAATGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 4 0.13
27 11 0.35
28 5 0.16
29 11 0.35
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (27 bp):
AATAATTTTAATAATTTTAAATTTTAA
Found at i:87008076 original size:8 final size:9
Alignment explanation
Indices: 87007995--87008096 Score: 55
Period size: 9 Copynumber: 10.6 Consensus size: 9
87007985 CATGTCAGGA
87007995 TTTAATTAATT
1 TTTAA-TAA-T
87008006 TTTAA-AAT
1 TTTAATAAT
*
87008014 TTTAAAAAT
1 TTTAATAAT
*
87008023 TTTAAAAAT
1 TTTAATAAT
* *
87008032 ATAGTTTATATTT
1 -T--TTAATA-AT
87008045 TTTAATAAT
1 TTTAATAAT
*
87008054 TTTAATGATT
1 TTTAAT-AAT
87008064 TTTAA-AAT
1 TTTAATAAT
87008072 TTTAAAATAAT
1 TTT--AATAAT
*
87008083 TTTTATAAT
1 TTTAATAAT
87008092 TTTAA
1 TTTAA
87008097 ATTTTAAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 20
0.72 0.09 0.20
Matches are distributed among these distances:
8 11 0.15
9 30 0.41
10 15 0.21
11 11 0.15
12 5 0.07
13 1 0.01
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (9 bp):
TTTAATAAT
Found at i:87009730 original size:20 final size:21
Alignment explanation
Indices: 87009698--87009758 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
87009688 TTATTAATAT
*
87009698 TATAT-TTAGTTATATATCTA
1 TATATCTTAGTTATATATCCA
*
87009718 TATATCTTATTATATATATCCA
1 TATATCTTAGT-TATATATCCA
*
87009740 TATATCTTAATATATATAT
1 TATATCTTAGT-TATATAT
87009759 GTGCATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 27 0.75
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (21 bp):
TATATCTTAGTTATATATCCA
Found at i:87009736 original size:22 final size:22
Alignment explanation
Indices: 87009708--87009758 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
87009698 TATATTTAGT
* *
87009708 TATATATCTATATATCTTATTA
1 TATATATCCATATATCTTAATA
87009730 TATATATCCATATATCTTAATA
1 TATATATCCATATATCTTAATA
87009752 TATATAT
1 TATATAT
87009759 GTGCATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (22 bp):
TATATATCCATATATCTTAATA
Found at i:87011966 original size:19 final size:20
Alignment explanation
Indices: 87011926--87011969 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
87011916 GTCTCTTTAG
* *
87011926 GCATT-CATTTCATGCATCT
1 GCATTACATTGCATGCATAT
87011945 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
87011964 GCATTA
1 GCATTA
87011970 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:87016366 original size:44 final size:43
Alignment explanation
Indices: 87016317--87016455 Score: 122
Period size: 44 Copynumber: 3.2 Consensus size: 43
87016307 AGTTACAGAT
*
87016317 CTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTTCTGCATTGACAG-GAAGCAGGTCGAAGACACAAAC
** * * * * *
87016361 CTTGCCTCTT-TCGGTTGTGATA-G-AGCTGGTTGAAGACAAAAGAT
1 CTTGCCT-TTCT-GCAT-TGACAGGAAGCAGGTCGAAGACACAA-AC
*
87016405 CTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAAC
1 CTTGCCTTTCTGCATTGACAG-GAAGCAGGTCGAAGACACAAAC
87016449 CTTGCCT
1 CTTGCCT
87016456 CTCTCGGTTG
Statistics
Matches: 71, Mismatches: 16, Indels: 16
0.69 0.16 0.16
Matches are distributed among these distances:
42 4 0.06
43 17 0.24
44 27 0.38
45 19 0.27
46 4 0.06
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (43 bp):
CTTGCCTTTCTGCATTGACAGGAAGCAGGTCGAAGACACAAAC
Found at i:87016463 original size:88 final size:87
Alignment explanation
Indices: 87016313--87016526 Score: 313
Period size: 88 Copynumber: 2.4 Consensus size: 87
87016303 ATGAAGTTAC
* *
87016313 AGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
*
87016378 T-GATAGAGCTGGTTGAAGACAAA
66 TAG-TAGAGCTGGTTAAAGA-AAA
* *
87016401 AGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTG
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
* **
87016466 TAGTGGAGCTGGTTAAAGAAGC
66 TAGTAGAGCTGGTTAAAGAAAA
* *
87016488 AGATCTTGCCTTCCTGAATTAACAGCGAAGCAGATCGAA
1 AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAA
87016527 AACAAAGTCT
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
87 36 0.32
88 76 0.67
89 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.25
Consensus pattern (87 bp):
AGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTG
TAGTAGAGCTGGTTAAAGAAAA
Found at i:87016637 original size:44 final size:44
Alignment explanation
Indices: 87016579--87017087 Score: 190
Period size: 44 Copynumber: 11.4 Consensus size: 44
87016569 GACACTATCC
* ** *
87016579 TATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATAAAGGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAGGATCT
* ** * ***
87016623 TATCTCTCTGAAGTTACAGCAGAGTAGA-TCGCAT-CAGG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAGGATCT
* * ** *
87016664 TATCT-CCTTAAGGTTACAGTGGAGTAGACCGAAGAATTTCA-GATCT
1 TATCTCCCTGAA-GTTACAGTGGAGCAGA-TTAA-AA-TACAGGATCT
* * **
87016710 TATCTCCCTGAGGTTACAGTGGAGCAGATT-GAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAG-GATCT
* * * ** *
87016754 TATCTCCCTG-AGATTACAGCGGAGCAGA-TCAAAGACACTATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATACAGGATCT
* * * *
87016797 TATCTCCCTGAAGTTACAGTGGAGCGGATTGAAATAAAAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAGGATCT
* * * *
87016841 TATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAGATTAAAA-CCAATGATCT
1 TATCTCCCTGAAGTT--A-C--AGT-G---G-AGCAGATTAAAATAC-AGGATCT
** * *** *
87016895 TATCTCTTTGAAGTTACAGTAGAGCAGA-TCGCA-CCAGG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAGGATCT
* * * * *
87016936 TATTTCCCT-TAGATTACAGTGGAACAGACTGAAGAATTTCA-GATCT
1 TATCTCCCTGAAG-TTACAGTGGAGCAGA-TTAA-AA-TACAGGATCT
* ** *
87016982 TATCTCCCTG-AGATTACAGCGGAGCAGATTGAAGCTAGCA--ATCC
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATT-AAAATA-CAGGATCT
* *
87017026 TATCTCCCTG-AGATTACAGTGGAGCGGATTAAAATAAAGGATCT
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATACAGGATCT
*
87017070 TATCTCTCTGAAGTTACA
1 TATCTCCCTGAAGTTACA
87017088 ATAGAGTAGA
Statistics
Matches: 347, Mismatches: 80, Indels: 76
0.69 0.16 0.15
Matches are distributed among these distances:
40 6 0.02
41 44 0.13
42 8 0.02
43 41 0.12
44 138 0.40
45 9 0.03
46 57 0.16
47 5 0.01
49 6 0.02
50 1 0.00
51 1 0.00
52 1 0.00
53 1 0.00
54 29 0.08
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATACAGGATCT
Found at i:87016801 original size:87 final size:87
Alignment explanation
Indices: 87016710--87016870 Score: 225
Period size: 87 Copynumber: 1.9 Consensus size: 87
87016700 TTTCAGATCT
* * * *
87016710 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTG-AGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAAAAGATCTTATCTCCCTGAAG-TTACAGC
*
87016774 GGAGCAGATCAAAGACACTATCC
65 AGAGCAGATCAAAGACACTATCC
* * *
87016797 TATCTCCCTGAAGTTACAGTGGAGCGGATTGAAATAAAAGATCTTATCTCTCTGAAGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAAAAGATCTTATCTCCCTGAAGTTACAGCA
*
87016862 GAGTAGATC
66 GAGCAGATC
87016871 GCATCAGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAAAAGATCTTATCTCCCTGAAGTTACAGCA
GAGCAGATCAAAGACACTATCC
Found at i:87017000 original size:46 final size:44
Alignment explanation
Indices: 87016933--87017048 Score: 133
Period size: 46 Copynumber: 2.6 Consensus size: 44
87016923 TCGCACCAGG
* * **
87016933 TCTTATTTCCCTTAGATTACAGTGGAACAGACTGAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAG-ATAGCA-A
* * * *
87016979 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGCAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGATAGCAA
*
87017023 TCCTATCTCCCTGAGATTACAGTGGA
1 TCTTATCTCCCTGAGATTACAGTGGA
87017049 GCGGATTAAA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 25 0.42
45 3 0.05
46 32 0.53
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGACTGAAGATAGCAA
Found at i:87018798 original size:20 final size:21
Alignment explanation
Indices: 87018766--87018826 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
87018756 TTATTAATAT
*
87018766 TATAT-TTAGTTATATATCTA
1 TATATCTTAGTTATATATCCA
*
87018786 TATATCTTATTATATATATCCA
1 TATATCTTAGT-TATATATCCA
*
87018808 TATATCTTAATATATATAT
1 TATATCTTAGT-TATATAT
87018827 GTGCATATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 27 0.75
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (21 bp):
TATATCTTAGTTATATATCCA
Found at i:87018804 original size:22 final size:22
Alignment explanation
Indices: 87018776--87018826 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
87018766 TATATTTAGT
* *
87018776 TATATATCTATATATCTTATTA
1 TATATATCCATATATCTTAATA
87018798 TATATATCCATATATCTTAATA
1 TATATATCCATATATCTTAATA
87018820 TATATAT
1 TATATAT
87018827 GTGCATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (22 bp):
TATATATCCATATATCTTAATA
Found at i:87019617 original size:109 final size:109
Alignment explanation
Indices: 87019420--87019621 Score: 352
Period size: 109 Copynumber: 1.9 Consensus size: 109
87019410 AAATATTTCC
87019420 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
*
87019485 CTCGTTCGACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAA
66 CTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAA
*
87019529 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
1 AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
* *
87019594 CTCGTTTAACCAAATTG-TCAAATATCCT
66 CTCGTTCAACCAAATAGCT-AAATATCCT
87019622 ATTGAATTTA
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 1 0.01
109 87 0.99
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (109 bp):
AAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTT
CTCGTTCAACCAAATAGCTAAATATCCTTTTAAAAACTTTTCAA
Found at i:87022571 original size:10 final size:10
Alignment explanation
Indices: 87022556--87022585 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
87022546 CATGTGTTTT
87022556 AATTGTAATA
1 AATTGTAATA
87022566 AATTGTAATA
1 AATTGTAATA
87022576 AATTGATAAT
1 AATTG-TAAT
87022586 TTTATTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (10 bp):
AATTGTAATA
Found at i:87025982 original size:21 final size:21
Alignment explanation
Indices: 87025958--87026019 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
87025948 AGATGATTGC
*
87025958 AAATTTTAAAATATCTTTAAA
1 AAATTTTAAAATATATTTAAA
* *
87025979 AAATATAATAAAT-TATTTAAA
1 AAATTTTA-AAATATATTTAAA
* *
87026000 AAA-TCTAAAATATATATAAA
1 AAATTTTAAAATATATTTAAA
87026020 TAAAATATCG
Statistics
Matches: 32, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
19 4 0.12
20 8 0.25
21 16 0.50
22 4 0.12
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (21 bp):
AAATTTTAAAATATATTTAAA
Found at i:87028255 original size:17 final size:19
Alignment explanation
Indices: 87028233--87028267 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
87028223 GATATGATAC
87028233 TAAAAT-TAT-TAAAAAAT
1 TAAAATATATATAAAAAAT
87028250 TAAAATATATATAAAAAA
1 TAAAATATATATAAAAAA
87028268 ATAGGGAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATATATATAAAAAAT
Found at i:87028557 original size:22 final size:21
Alignment explanation
Indices: 87028522--87028597 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
87028512 AAAAGGTATC
* *
87028522 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
87028543 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
87028566 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
87028585 TGC-AATCATATCT
1 TACAAATCATATCT
87028598 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:87028614 original size:35 final size:37
Alignment explanation
Indices: 87028551--87028648 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
87028541 ATTACAAAAT
87028551 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
87028587 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
87028622 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
87028649 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:87028656 original size:17 final size:19
Alignment explanation
Indices: 87028558--87028648 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
87028548 AATCATATCT
87028558 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
87028577 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
87028595 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
87028612 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
87028631 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
87028649 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:87028805 original size:21 final size:20
Alignment explanation
Indices: 87028767--87028806 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
87028757 TTGGACTTTG
**
87028767 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
87028787 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
87028807 TCTGGGCCCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:87029054 original size:45 final size:45
Alignment explanation
Indices: 87028999--87029198 Score: 276
Period size: 45 Copynumber: 4.5 Consensus size: 45
87028989 GGATGGCGAT
* *
87028999 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
87029044 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCTAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * * *
87029089 ATCTGCT-TCTTCAATCTGCTTCCCATCTAATACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* * *
87029133 ATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAAAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
* *
87029178 ATCTGTCATCTTAGATCTGCT
1 ATCTGTTATCTTCGATCTGCT
87029199 TCGATGTAAA
Statistics
Matches: 133, Mismatches: 21, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
44 38 0.29
45 95 0.71
ACGTcount: A:0.25, C:0.28, G:0.14, T:0.33
Consensus pattern (45 bp):
ATCTGTTATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAA
Found at i:87029125 original size:89 final size:88
Alignment explanation
Indices: 87028999--87029200 Score: 278
Period size: 89 Copynumber: 2.2 Consensus size: 88
87028989 GGATGGCGAT
* * * *
87028999 ATCTGCTATCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCGATCTGC
1 ATCTGCT-TC-TTAATCTGCTTCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGC
* *
87029064 TCCCCGTCTAATACAGAGACGCTAA
64 TCCCCGTCTAATACAAAGACGCCAA
*
87029089 ATCTGCTTCTTCAATCTGCTTCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCT
1 ATCTGCTTCTT-AATCTGCTTCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGCT
*
87029154 CCCCGTCTAATACAAAGATGCCAA
65 CCCCGTCTAATACAAAGACGCCAA
*
87029178 ATCTGTCATCTTAGATCTGCTTC
1 ATCTG-CTTCTTA-ATCTGCTTC
87029201 GATGTAAACA
Statistics
Matches: 100, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
88 2 0.02
89 77 0.77
90 21 0.21
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.33
Consensus pattern (88 bp):
ATCTGCTTCTTAATCTGCTTCCCATCTAATACAGAGATGCCAAATCTGTTATCTCCGATCTGCTC
CCCGTCTAATACAAAGACGCCAA
Found at i:87029349 original size:78 final size:78
Alignment explanation
Indices: 87029212--87029427 Score: 306
Period size: 78 Copynumber: 2.8 Consensus size: 78
87029202 ATGTAAACAC
* * * * *
87029212 ATGAAAGTCAGATCTACTATGTCTTCGATCTACTTCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCT
*
87029277 TGGATCTGCTTCA
66 TGGATCTACTTCA
* * *
87029290 ATGAAGGTCAGATCTGTTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGTCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCT
87029355 TGGATCTACTTCA
66 TGGATCTACTTCA
* * ** *
87029368 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAAT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAAT
87029428 TTGTTTCTTC
Statistics
Matches: 121, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
78 121 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCT
TGGATCTACTTCA
Found at i:87029669 original size:44 final size:44
Alignment explanation
Indices: 87029609--87029739 Score: 140
Period size: 44 Copynumber: 3.0 Consensus size: 44
87029599 ATCTGCTATG
* **
87029609 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTT-
1 TCTTCGATTTGCTCTCCGTC-AATACAGAGATGCCAAATCTGTTA
* * **
87029653 TCTTCGATTTGTTCTCCGACAATACAGAGATGTTAAATCTGTTA
1 TCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGTTA
* *
87029697 TC-TCTGATTCGCTCTCCGTCTAATACAGAGATGCCAATTCTGT
1 TCTTC-GATTTGCTCTCCGTC-AATACAGAGATGCCAAATCTGT
87029740 CACCTTGGAT
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
43 21 0.30
44 31 0.44
45 19 0.27
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.36
Consensus pattern (44 bp):
TCTTCGATTTGCTCTCCGTCAATACAGAGATGCCAAATCTGTTA
Found at i:87029789 original size:180 final size:175
Alignment explanation
Indices: 87029548--87030027 Score: 482
Period size: 156 Copynumber: 2.8 Consensus size: 175
87029538 TCAACGCAAG
* * *
87029548 GATGCCAAATCATCTTGGATCTACTTTGATGTGAAGACATCCGAAGGTTAGATCTGCTATGTCTT
1 GATGCCAAATCACCTTGGATCTAC-TTGATGT-AACACAT--GAAGGTCAGATCTGCTATGTCTT
87029613 CGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACAATAC
62 CGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCT-CGACAATAC
* *
87029678 AGAGATGTTAAATCTGTTATCTC-T-GAT-TCGCTCTCCGTCTAATACAGA
126 AGAGATGTCAAATCTGTTATCTCTTCGATCT-GCTCCCCGTCTAATACAGA
*
87029726 GATGCCAATTCTGTCACCTTGGATCTACTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTC
1 GATGCCAA----ATCACCTTGGATCTACTT-GATGT-AACACATGAAGGTCAGATCTGCTATGTC
* * * * * * *
87029791 TTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATC---ATCTTGGATCTG--CT--TCAAT-
60 TTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCGACAATA
* * *
87029848 --GA-AGGTCCAATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGA
125 CAGAGATGTCAAATCTGTTATCTCTTCGATCTGCTCCCCGTCTAATACAGA
* * *
87029896 TATGCCAAATCATCTTGGA--T-C-TGCT-T--CA-ATGAAGGTCAGATCTGCTATGTCTTCGAT
1 GATGCCAAATCACCTTGGATCTACTTGATGTAACACATGAAGGTCAGATCTGCTATGTCTTCGAT
* * *
87029953 CTGCTCTCTGTTGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCTGACAGTACAGAG
66 CTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTC-GACAATACAGAG
*
87030018 ATGCCAAATC
130 ATGTCAAATC
87030028 ATCTTAGATT
Statistics
Matches: 248, Mismatches: 34, Indels: 50
0.75 0.10 0.15
Matches are distributed among these distances:
156 56 0.23
157 2 0.01
159 9 0.04
160 1 0.00
161 4 0.02
162 1 0.00
163 1 0.00
164 4 0.02
166 9 0.04
167 2 0.01
168 22 0.09
169 3 0.01
170 28 0.11
171 1 0.00
172 4 0.02
175 2 0.01
177 9 0.04
178 8 0.03
180 55 0.22
181 2 0.01
182 25 0.10
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (175 bp):
GATGCCAAATCACCTTGGATCTACTTGATGTAACACATGAAGGTCAGATCTGCTATGTCTTCGAT
CTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCGACAATACAGAGA
TGTCAAATCTGTTATCTCTTCGATCTGCTCCCCGTCTAATACAGA
Found at i:87029901 original size:78 final size:78
Alignment explanation
Indices: 87029768--87029984 Score: 339
Period size: 78 Copynumber: 2.8 Consensus size: 78
87029758 ATGTAAACAC
*
87029768 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATATAGAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
87029833 TGGATCTGCTTCA
66 TGGATCTGCTTCA
* *
87029846 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
87029910 TTGGATCTGCTTCA
65 TTGGATCTGCTTCA
* * **
87029924 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCTGT-TGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCT-AATACAGAGATGCCAAATC
87029985 TGTTTCTTCG
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
77 3 0.02
78 122 0.96
79 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TGGATCTGCTTCA
Found at i:87030169 original size:556 final size:556
Alignment explanation
Indices: 87029052--87030247 Score: 1993
Period size: 556 Copynumber: 2.1 Consensus size: 556
87029042 AAATCTGTTA
* * ** * * * * *
87029052 TCTTCGATCTGCTCCCCGTCTAATACAGAGACGCTAAATCTGCTTCTTCAATCTGCTTC-CC-AT
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTG-TTCTCCGA-
** *
87029115 CTAATACAGAGATGCCAAATCTGTTATCTCCGATTTGCTCCCCGTCTAATACAAAGATGCCAAAT
64 C-AATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCCCCGTCTAATACAAAGATGCCAAAT
* *
87029180 CTGTCATCTTAGATCTGCTTCGATGTAAACACATGAAAGTCAGATCTACTATGTCTTCGATCTAC
128 CTGTCACCTTAGATCTACTTCGATGTAAACACATGAAAGTCAGATCTACTATGTCTTCGATCTAC
* *
87029245 TTCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTGT
193 TCCCCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTAT
*
87029310 GTCTTCGATCTGCTCCCCGTCTAATACAGAAATGTCAAATCATCTTGGATCTACTTCAATGAAGG
258 GTCTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCTTGGATCTACTTCAATGAAGG
*
87029375 TCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATTTGTTTCTTCGA
323 TCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGA
87029440 TTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAA
388 TTTGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAA
*
87029505 GCCAAATCTGCTATGTCTTCGATCTGTTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCT
453 GCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCT
*
87029570 ACTTTGATGTGAAGACATCCGAAGGTTAGATCTGCTATG
518 ACTTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATG
87029609 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
* * * *
87029674 ATACAGAGATGTTAAATCTGTTATCTCTGATTCGCTCTCCGTCTAATACAGAGATGCCAATTCTG
66 ATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCCCCGTCTAATACAAAGATGCCAAATCTG
* * * *
87029739 TCACCTTGGATCTACTTCGATGTAAACACATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCC
131 TCACCTTAGATCTACTTCGATGTAAACACATGAAAGTCAGATCTACTATGTCTTCGATCTACTCC
*
87029804 CCGTCTAATATAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCCA-ATCTGTTATGT
196 CCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGT-CAGATCTGTTATGT
* *
87029868 CTTCGATCTGCTCCCCGTCTAATACAGATATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTC
260 CTTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCTTGGATCTACTTCAATGAAGGTC
* **
87029933 AGATCTGCTATGTCTTCGATCTGCTCTCTGTTGAATATGGAGATGCCAAATCTGTTTCTTCGATT
325 AGATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATT
* *
87029998 TGTTCTCTGACAGTACAGAGATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACACGTGAAAGC
390 TGTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGC
87030063 CAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTAC
455 CAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTAC
87030128 TTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATG
520 TTCGATGTGAAGACATCCGAAGGTTAGATCTGCTATG
* *
87030165 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTATTTCTTCGATTTGTTCTCTGACA
1 TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
87030230 ATACAGAGATGTTAAATC
66 ATACAGAGATGTTAAATC
87030248 ATCTTGGATT
Statistics
Matches: 598, Mismatches: 38, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
556 546 0.91
557 51 0.09
558 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (556 bp):
TCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCGATTTGTTCTCCGACA
ATACAGAGATGTTAAATCTGTTATCTCCGATTCGCTCCCCGTCTAATACAAAGATGCCAAATCTG
TCACCTTAGATCTACTTCGATGTAAACACATGAAAGTCAGATCTACTATGTCTTCGATCTACTCC
CCGTCTAATACAGAGATGCCAAATCATCTTGGATCTGCTTCAATGAAGGTCAGATCTGTTATGTC
TTCGATCTGCTCCCCGTCTAATACAGAAATGCCAAATCATCTTGGATCTACTTCAATGAAGGTCA
GATCTGCTATGTCTTCGATCTGCTCTCCGTCAAATATGGAGATGCCAAATCTGTTTCTTCGATTT
GTTCTCTAACAGTACAGAGATGCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCC
AAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACT
TCGATGTGAAGACATCCGAAGGTTAGATCTGCTATG
Found at i:87038259 original size:17 final size:18
Alignment explanation
Indices: 87038237--87038271 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
87038227 GATATGATAC
*
87038237 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
87038254 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
87038272 CAGGGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:87038559 original size:22 final size:21
Alignment explanation
Indices: 87038524--87038599 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
87038514 AAAAGGTATC
* *
87038524 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
87038545 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
87038568 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
87038587 TGC-AATCATATCT
1 TACAAATCATATCT
87038600 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:87038584 original size:19 final size:19
Alignment explanation
Indices: 87038560--87038650 Score: 143
Period size: 19 Copynumber: 4.9 Consensus size: 19
87038550 AATCATATCT
87038560 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
87038579 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
*
87038597 TCTAAGATTG--TATCTTA
1 TCTAAGATTGCATATCATA
*
87038614 TTTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
87038633 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
87038651 TGAAGATTAT
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
17 14 0.22
18 16 0.25
19 35 0.54
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:87038657 original size:36 final size:36
Alignment explanation
Indices: 87038553--87038658 Score: 137
Period size: 36 Copynumber: 3.0 Consensus size: 36
87038543 ATTACAAAAT
87038553 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGCATATCAT-T-TAAGATTG
* * *
87038589 CA-ATCATATCTAAGATTGTATCTTATTTAAGATTG
1 CATATCATATCTAAGATTGCATATCATTTAAGATTG
*
87038624 CATATCATATCTAAGATTGCATATCATTGAAGATT
1 CATATCATATCTAAGATTGCATATCATTTAAGATT
87038659 ATATTTCCAT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
35 13 0.22
36 32 0.53
37 15 0.25
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (36 bp):
CATATCATATCTAAGATTGCATATCATTTAAGATTG
Found at i:87039156 original size:24 final size:24
Alignment explanation
Indices: 87039125--87039193 Score: 95
Period size: 24 Copynumber: 2.9 Consensus size: 24
87039115 ACAAAGATTT
87039125 TTATGCTAATAAATG-TCAAATATA
1 TTATGCTAATAAATGCT-AAATATA
*
87039149 TTATGCTAATAGATGCTAAATATA
1 TTATGCTAATAAATGCTAAATATA
* *
87039173 TTATACTAATAAATACTAAAT
1 TTATGCTAATAAATGCTAAAT
87039194 CTTATAGAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (24 bp):
TTATGCTAATAAATGCTAAATATA
Found at i:87039502 original size:16 final size:16
Alignment explanation
Indices: 87039478--87039511 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
87039468 AAGTTCGCAC
87039478 TTATGTAGCTTGCATT
1 TTATGTAGCTTGCATT
*
87039494 TTATTTAGCTTGCATT
1 TTATGTAGCTTGCATT
87039510 TT
1 TT
87039512 GCACAACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.15, T:0.56
Consensus pattern (16 bp):
TTATGTAGCTTGCATT
Found at i:87039559 original size:16 final size:16
Alignment explanation
Indices: 87039538--87039583 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
87039528 ATTCAACTTG
87039538 CAGCTTGCACTTTTCA
1 CAGCTTGCACTTTTCA
* *
87039554 CAGCTTGCACATTTCT
1 CAGCTTGCACTTTTCA
* *
87039570 CAACTCGCACTTTT
1 CAGCTTGCACTTTT
87039584 TCCGAGTTTG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.20, C:0.33, G:0.11, T:0.37
Consensus pattern (16 bp):
CAGCTTGCACTTTTCA
Found at i:87039926 original size:93 final size:93
Alignment explanation
Indices: 87039782--87039965 Score: 323
Period size: 93 Copynumber: 2.0 Consensus size: 93
87039772 GTTTCAACTA
87039782 TATGTCCAATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCA
1 TATGTCCAATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCA
*
87039847 GTCATCTTCTCAACCAATTTTGACTTAG
66 GTAATCTTCTCAACCAATTTTGACTTAG
* * * *
87039875 TATGTCTAATGCTTTTAACAGGAAGATCATCAAAACCTTCATCTTCATCTTTATCTTCAACTTTA
1 TATGTCCAATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCA
87039940 GTAATCTTCTCAACCAATTTTGACTT
66 GTAATCTTCTCAACCAATTTTGACTT
87039966 GCACACTTGA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 86 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (93 bp):
TATGTCCAATGCTTTTAACACGAAGATCATCAAAACCTCCATCTTCATCTTTATCTTCAACTTCA
GTAATCTTCTCAACCAATTTTGACTTAG
Found at i:87050204 original size:21 final size:21
Alignment explanation
Indices: 87050178--87050225 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
87050168 TGGACAACAT
* * *
87050178 ACACGGGCGTGTGAAGTAGTC
1 ACACGGGCATATGAAGTAGCC
*
87050199 ACACGGGCATATGGAGTAGCC
1 ACACGGGCATATGAAGTAGCC
87050220 ACACGG
1 ACACGG
87050226 CTATGTCTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.35, T:0.15
Consensus pattern (21 bp):
ACACGGGCATATGAAGTAGCC
Found at i:87051184 original size:24 final size:24
Alignment explanation
Indices: 87051143--87051203 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
87051133 AAAGAAATAA
*
87051143 CAAATACTTTTATGCTAATAAATGT
1 CAAATA-TATTATGCTAATAAATGT
87051168 CAAATATATTATGCTAATAAATGT
1 CAAATATATTATGCTAATAAATGT
*
87051192 TAAATATATTAT
1 CAAATATATTAT
87051204 ATTGATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
24 28 0.82
25 6 0.18
ACGTcount: A:0.44, C:0.08, G:0.07, T:0.41
Consensus pattern (24 bp):
CAAATATATTATGCTAATAAATGT
Found at i:87051211 original size:24 final size:24
Alignment explanation
Indices: 87051143--87051213 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
87051133 AAAGAAATAA
* *
87051143 CAAATACTTTTATGCTAATAAATGT
1 CAAATA-TATTATACTAATAAATGT
*
87051168 CAAATATATTATGCTAATAAATGT
1 CAAATATATTATACTAATAAATGT
* * *
87051192 TAAATATATTATATTGATAAAT
1 CAAATATATTATACTAATAAAT
87051214 ACTAAATCTT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 35 0.85
25 6 0.15
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.41
Consensus pattern (24 bp):
CAAATATATTATACTAATAAATGT
Found at i:87051219 original size:24 final size:24
Alignment explanation
Indices: 87051152--87051220 Score: 59
Period size: 24 Copynumber: 2.9 Consensus size: 24
87051142 ACAAATACTT
* *
87051152 TTATGCTAATAAAT-GTCAAATATA
1 TTATACTAATAAATACT-AAATATA
* **
87051176 TTATGCTAATAAATGTTAAATATA
1 TTATACTAATAAATACTAAATATA
* *
87051200 TTATATTGATAAATACTAAAT
1 TTATACTAATAAATACTAAAT
87051221 CTTCTAGAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (24 bp):
TTATACTAATAAATACTAAATATA
Found at i:87051283 original size:30 final size:30
Alignment explanation
Indices: 87051234--87051296 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
87051224 CTAGAGAGAA
* *
87051234 AATATGTTTTGTTTAACTTGACTTGCAAGC
1 AATATATTTTATTTAACTTGACTTGCAAGC
* *
87051264 AATATATTTTATTTCACTTGTCTTGCAAGC
1 AATATATTTTATTTAACTTGACTTGCAAGC
87051294 AAT
1 AAT
87051297 CTCTTTAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.44
Consensus pattern (30 bp):
AATATATTTTATTTAACTTGACTTGCAAGC
Found at i:87052512 original size:13 final size:13
Alignment explanation
Indices: 87052494--87052518 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
87052484 AGCCGTGTGT
87052494 GACACACGACTAA
1 GACACACGACTAA
87052507 GACACACGACTA
1 GACACACGACTA
87052519 TGTGGATGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.16, T:0.08
Consensus pattern (13 bp):
GACACACGACTAA
Found at i:87052942 original size:21 final size:19
Alignment explanation
Indices: 87052916--87052957 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
87052906 ATTTTCTTAC
*
87052916 CATCAACTTAACCAACACAAA
1 CATCAAATTAA-CAAC-CAAA
87052937 CATCAAATTAACAACCAAA
1 CATCAAATTAACAACCAAA
87052956 CA
1 CA
87052958 AAATACCATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 4 0.20
21 10 0.50
ACGTcount: A:0.55, C:0.31, G:0.00, T:0.14
Consensus pattern (19 bp):
CATCAAATTAACAACCAAA
Found at i:87059905 original size:3 final size:3
Alignment explanation
Indices: 87059897--87059923 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
87059887 CAACTCCAAA
87059897 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
87059924 GTCATACTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:87062560 original size:24 final size:24
Alignment explanation
Indices: 87062516--87062567 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
87062506 TTTCTAGAAG
* **
87062516 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGAATTTATTACCATAATAT
*
87062540 ATTTAGAATTTATTACCATAATTT
1 ATTTAGAATTTATTACCATAATAT
87062564 ATTT
1 ATTT
87062568 GACCTACGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (24 bp):
ATTTAGAATTTATTACCATAATAT
Found at i:87062907 original size:60 final size:60
Alignment explanation
Indices: 87062814--87062935 Score: 235
Period size: 60 Copynumber: 2.0 Consensus size: 60
87062804 AATTTTTGTG
87062814 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
1 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
*
87062874 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTATTTGCTTAATCGAGTTGATCCC
1 TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
87062934 TT
1 TT
87062936 TCAACATTTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 61 1.00
ACGTcount: A:0.21, C:0.20, G:0.09, T:0.50
Consensus pattern (60 bp):
TTCAATTTCTCAATTTCATTCGCTATTTTTACTTATTAGTTGCTTAATCGAGTTGATCCC
Found at i:87065774 original size:11 final size:11
Alignment explanation
Indices: 87065750--87065785 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
87065740 TTAATATTTT
87065750 TTCTTTTA-TG
1 TTCTTTTATTG
87065760 TTCTTTTATTG
1 TTCTTTTATTG
87065771 TTCTTTT-TT-
1 TTCTTTTATTG
87065780 TTCTTT
1 TTCTTT
87065786 ATTTTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 6 0.24
10 10 0.40
11 9 0.36
ACGTcount: A:0.06, C:0.11, G:0.06, T:0.78
Consensus pattern (11 bp):
TTCTTTTATTG
Found at i:87066850 original size:29 final size:29
Alignment explanation
Indices: 87066814--87066872 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
87066804 ATATAAGGAC
87066814 TAATTGTATAATTTAACAGAAAATTTTTG
1 TAATTGTATAATTTAACAGAAAATTTTTG
87066843 TAATTGTATAATTTAACAGAAAATTTTTG
1 TAATTGTATAATTTAACAGAAAATTTTTG
87066872 T
1 T
87066873 TTGAAATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.03, G:0.10, T:0.46
Consensus pattern (29 bp):
TAATTGTATAATTTAACAGAAAATTTTTG
Found at i:87068128 original size:19 final size:17
Alignment explanation
Indices: 87068078--87068151 Score: 69
Period size: 18 Copynumber: 4.2 Consensus size: 17
87068068 TTATGATATA
*
87068078 TATATTTTATAAACTTTT
1 TATATTTT-TAAAATTTT
* *
87068096 TATAATTTT-GAATTTT
1 TATATTTTTAAAATTTT
*
87068112 TTTATTTCTTGAAAATTTT
1 TATATTT-TT-AAAATTTT
87068131 TATATTTTTAAAATTATT
1 TATATTTTTAAAATT-TT
87068149 TAT
1 TAT
87068152 TGACATATAT
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
16 10 0.22
17 9 0.20
18 14 0.31
19 12 0.27
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (17 bp):
TATATTTTTAAAATTTT
Found at i:87068130 original size:18 final size:16
Alignment explanation
Indices: 87068080--87068152 Score: 56
Period size: 17 Copynumber: 4.2 Consensus size: 16
87068070 ATGATATATA
*
87068080 TATTTTATAAACTTTTT
1 TATTTT-TAAAATTTTT
* * *
87068097 ATAATTTTGAATTTTTT
1 -TATTTTTAAAATTTTT
87068114 TATTTCTTGAAAATTTTT
1 TATTT-TT-AAAATTTTT
*
87068132 ATATTTTTAAAATTATT
1 -TATTTTTAAAATTTTT
87068149 TATT
1 TATT
87068153 GACATATATA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
16 8 0.18
17 18 0.40
18 14 0.31
19 5 0.11
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (16 bp):
TATTTTTAAAATTTTT
Found at i:87068860 original size:20 final size:20
Alignment explanation
Indices: 87068831--87068868 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87068821 CAAAGGGGCG
*
87068831 TCAATTTTTTTAATGTATAC
1 TCAATCTTTTTAATGTATAC
*
87068851 TCAATCTTTTTCATGTAT
1 TCAATCTTTTTAATGTAT
87068869 TTGGAATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (20 bp):
TCAATCTTTTTAATGTATAC
Found at i:87089797 original size:13 final size:13
Alignment explanation
Indices: 87089787--87089828 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
87089777 TTCGTTTTCA
87089787 TTCTTTCTTTTAT
1 TTCTTTCTTTTAT
87089800 TTCTTTCTTTTATT
1 TTCTTTCTTTTA-T
* *
87089814 TTATTTGTTTTAT
1 TTCTTTCTTTTAT
87089827 TT
1 TT
87089829 AATTACTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 15 0.58
14 11 0.42
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.79
Consensus pattern (13 bp):
TTCTTTCTTTTAT
Found at i:87089826 original size:14 final size:14
Alignment explanation
Indices: 87089790--87089828 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
87089780 GTTTTCATTC
*
87089790 TTTCTTTTA-TTTC
1 TTTCTTTTATTTTA
87089803 TTTCTTTTATTTTA
1 TTTCTTTTATTTTA
*
87089817 TTTGTTTTATTT
1 TTTCTTTTATTT
87089829 AATTACTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 9 0.39
14 14 0.61
ACGTcount: A:0.10, C:0.08, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTCTTTTATTTTA
Found at i:87093793 original size:18 final size:18
Alignment explanation
Indices: 87093770--87093855 Score: 109
Period size: 18 Copynumber: 4.7 Consensus size: 18
87093760 GAACGATTAT
*
87093770 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAA
*
87093788 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAA
* * *
87093806 TTATTCAATAATAATCAG
1 TTATTCAGTAACAATCAA
*
87093824 TTATTCAGTAACAATTAAA
1 TTATTCAGTAACAA-TCAA
87093843 TTATTCAGTAACA
1 TTATTCAGTAACA
87093856 GTCGATCTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
18 42 0.74
19 15 0.26
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:87094052 original size:47 final size:47
Alignment explanation
Indices: 87093983--87094146 Score: 249
Period size: 47 Copynumber: 3.5 Consensus size: 47
87093973 CAGTAACAGT
* * *
87093983 AACAATAGCAATACGGTACACAGAGTACCTCATCGGAACAAATCCGG
1 AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
*
87094030 AACAATAACAGTACGGTACACAGAGTACTTCATCAGAACAAATCCGG
1 AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
* *
87094077 AACAGTAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGA
1 AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
*
87094124 AACAGTAACAGTAACGGTA-ACAG
1 AACAATAACAGT-ACGGTACACAG
87094147 TAACAATATC
Statistics
Matches: 109, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
47 103 0.94
48 6 0.06
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (47 bp):
AACAATAACAGTACGGTACACAGAGTACTTCATCGGAACAAATCCGG
Found at i:87094382 original size:21 final size:20
Alignment explanation
Indices: 87094326--87094382 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
87094316 CACTTTTCAG
87094326 TTTTCAATTAAT-TCATATTT
1 TTTTCAATTAATAT-ATATTT
*
87094346 TAATT-AATTAATTATATATTT
1 T-TTTCAATTAA-TATATATTT
87094367 TTTTCAATTCAATATA
1 TTTTCAATT-AATATA
87094383 ATTCCATTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
20 9 0.30
21 18 0.60
22 3 0.10
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (20 bp):
TTTTCAATTAATATATATTT
Found at i:87095027 original size:31 final size:32
Alignment explanation
Indices: 87094971--87095033 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
87094961 CACACTTGTC
*
87094971 ATAATTTAATATATTTATTACATAAAAATCTT
1 ATAATATAATATATTTATTACATAAAAATCTT
*
87095003 ATAATATAA-ATATTTAATTA-ATAAATATCTT
1 ATAATATAATATATTT-ATTACATAAAAATCTT
87095034 TTATAAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (32 bp):
ATAATATAATATATTTATTACATAAAAATCTT
Found at i:87105379 original size:40 final size:40
Alignment explanation
Indices: 87105314--87105405 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
87105304 ATTATGTTTG
* *
87105314 GCACTTAGTGTGCGTTTCGAGATAGCTTCGGGTATATATA
1 GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATA
* * * *
87105354 GCACTTAGTGTGCGAATTGGA-ATAGCTTTGGCTATATGTG
1 GCACTTAGTGTGCG-ATTCGAGATAGCTTCGGCTATATATA
*
87105394 GCACTAAGTGTG
1 GCACTTAGTGTG
87105406 TGATGCTAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
40 40 0.91
41 4 0.09
ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34
Consensus pattern (40 bp):
GCACTTAGTGTGCGATTCGAGATAGCTTCGGCTATATATA
Found at i:87106173 original size:23 final size:24
Alignment explanation
Indices: 87106128--87106180 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
87106118 ATGGTAAATT
*
87106128 TTGGTATGATTTGTGAATGATGAA
1 TTGGTATGATTTGAGAATGATGAA
*
87106152 TTGGTATG-TTTGAGAA-GCATGAT
1 TTGGTATGATTTGAGAATG-ATGAA
87106175 TTGGTA
1 TTGGTA
87106181 GATAGAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 1 0.04
23 17 0.65
24 8 0.31
ACGTcount: A:0.26, C:0.02, G:0.30, T:0.42
Consensus pattern (24 bp):
TTGGTATGATTTGAGAATGATGAA
Found at i:87110509 original size:42 final size:42
Alignment explanation
Indices: 87110428--87110570 Score: 139
Period size: 43 Copynumber: 3.3 Consensus size: 42
87110418 TCCCAAACGT
* *
87110428 GGTCTTACATGTAATCAAATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAAC-ATCCCAGACAG
* *
87110471 GGTCTTACACGAAATCAAATACGATGCCAACGTCCCAGACAT
1 GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGACAG
* * * *
87110513 AGTCTTACATGTAAATCATAAGT-CAATGCCAACATCCTAGAC-G
1 GGTCTTACACG-AAATCA-AA-TACGATGCCAACATCCCAGACAG
87110556 TGGTCTTACACGAAA
1 -GGTCTTACACGAAA
87110571 ACACATATCG
Statistics
Matches: 83, Mismatches: 12, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
42 25 0.30
43 30 0.36
44 27 0.33
45 1 0.01
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAACATCCCAGACAG
Found at i:87113806 original size:19 final size:21
Alignment explanation
Indices: 87113765--87113807 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
87113755 TTCAGTATTC
*
87113765 AAAAAATCATTATAAATAGTA
1 AAAAAATCATTATAAAGAGTA
*
87113786 AAAAAATGATTAT-AAGA-TA
1 AAAAAATCATTATAAAGAGTA
87113805 AAA
1 AAA
87113808 TTTTACGCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 12 0.60
ACGTcount: A:0.65, C:0.02, G:0.07, T:0.26
Consensus pattern (21 bp):
AAAAAATCATTATAAAGAGTA
Found at i:87114804 original size:141 final size:141
Alignment explanation
Indices: 87114474--87114808 Score: 438
Period size: 141 Copynumber: 2.4 Consensus size: 141
87114464 AGCTAAGGCC
* ** ** * * * *
87114474 GAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCAATGTGATGA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
* * * *
87114539 ATGTGAACATGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATGT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
* *
87114604 GTGATAAGGCC
131 GTGATAAGACA
* * *
87114615 GAATGGCCAATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCAATGTGATAA
1 GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
*
87114680 ATGTGAACATGCATATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
66 ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
87114745 GTGATAAGACA
131 GTGATAAGACA
* * * * *
87114756 GAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGAAAGCCGAATGG
1 GAATGGCCAATGTGATGAACAT-GAACATGCACATATGTGAGAAAGCCGAATGG
87114809 TTAATGCGAA
Statistics
Matches: 172, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
141 169 0.98
142 3 0.02
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.25
Consensus pattern (141 bp):
GAATGGCCAATGTGATGAACATGAACATGCACATATGTGAGAAAGCCGAATGGCCAATGTGATAA
ATGTGAACATGCACATATGTGATAAGGCAGAATGGCCAATGTGATAAATGTGAACATGCATATAT
GTGATAAGACA
Found at i:87114808 original size:47 final size:47
Alignment explanation
Indices: 87114436--87114774 Score: 507
Period size: 47 Copynumber: 7.2 Consensus size: 47
87114426 TTAGAATTTT
* ** * * * *
87114436 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
87114483 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
87114530 ATGTGATGAATGTGAACATGTACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
87114577 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
87114624 ATGTGATGAATATGAACATGCACATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
87114671 ATGTGATAAATGTGAACATGCATATATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
87114718 ATGTGATAAATGTGAACATGCATATATGTGATAAGACAGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
87114765 ATGTGATGAA
1 ATGTGATGAA
87114775 CGTGGAAGTG
Statistics
Matches: 267, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 267 1.00
ACGTcount: A:0.35, C:0.12, G:0.28, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:87114841 original size:46 final size:46
Alignment explanation
Indices: 87114788--87114878 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
87114778 GGAAGTGTAT
* * *
87114788 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* * *
87114834 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
87114879 TGTATATATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:87121192 original size:40 final size:40
Alignment explanation
Indices: 87121126--87121409 Score: 365
Period size: 40 Copynumber: 6.9 Consensus size: 40
87121116 TATGTGTGCA
87121126 TGATATATCCGGG-T-AGACCCGAAGGCAATTATGCGAGT
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
87121164 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGGATTATGCGAGT
1 TGATATATCCGGGCTAAGACCCGAA-G-------GC-A--ATTATGCGAGT
* *
87121215 TGATATATCCGGGTTATGACCCGAAGGCAATTATGCGAGT
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
*
87121255 TGACATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
* * *
87121295 TGATATATCCGGGCTATGACCCGAAGGCAATTATGCGGGA
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
87121335 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
* * * *
87121375 TCATATGTCCGGGTTAAGACCCGAAGGCAAATATG
1 TGATATATCCGGGCTAAGACCCGAAGGCAATTATG
87121410 TTTGCGGCTG
Statistics
Matches: 217, Mismatches: 16, Indels: 24
0.84 0.06 0.09
Matches are distributed among these distances:
38 13 0.06
39 1 0.00
40 161 0.74
41 1 0.00
42 1 0.00
43 2 0.01
48 2 0.01
49 1 0.00
50 1 0.00
51 34 0.16
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGT
Done.