Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 276 of 295
Found at i:87930896 original size:20 final size:21
Alignment explanation
Indices: 87930868--87930918 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
87930858 GTAAAATTTA
87930868 ATTAGAATATATAAACTAT-ATT
1 ATTA-AATATATAAA-TATAATT
*
87930890 -TTAAATATTTAAATATAATT
1 ATTAAATATATAAATATAATT
87930910 ATTAAATAT
1 ATTAAATAT
87930919 TTGTAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 3 0.12
20 12 0.46
21 11 0.42
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATTAAATATATAAATATAATT
Found at i:87930916 original size:21 final size:21
Alignment explanation
Indices: 87930868--87930920 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
87930858 GTAAAATTTA
*
87930868 ATTAGAATATATAAACTATATT
1 ATTA-AATATTTAAACTATATT
87930890 -TTAAATATTTAAA-TATAATT
1 ATTAAATATTTAAACTAT-ATT
87930910 ATTAAATATTT
1 ATTAAATATTT
87930921 GTAATTAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATTAAATATTTAAACTATATT
Found at i:87930927 original size:14 final size:13
Alignment explanation
Indices: 87930910--87930980 Score: 50
Period size: 11 Copynumber: 5.9 Consensus size: 13
87930900 AAATATAATT
87930910 ATTAAATATTTGTA
1 ATTAAATATTT-TA
*
87930924 ATT-AGTATTTTA
1 ATTAAATATTTTA
87930936 A--AAATATTTT-
1 ATTAAATATTTTA
87930946 -TTAAATATTTGTA
1 ATTAAATATTT-TA
*
87930959 ATT-AGTATTTTA
1 ATTAAATATTTTA
87930971 A--AAATATTTT
1 ATTAAATATTTT
87930981 TTTATTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 17
0.69 0.06 0.25
Matches are distributed among these distances:
11 22 0.48
12 7 0.15
13 12 0.26
14 5 0.11
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (13 bp):
ATTAAATATTTTA
Found at i:87930977 original size:35 final size:35
Alignment explanation
Indices: 87930897--87930982 Score: 145
Period size: 35 Copynumber: 2.5 Consensus size: 35
87930887 ATTTTAAATA
* * *
87930897 TTTAAATATAATTATTAAATATTTGTAATTAGTAT
1 TTTAAAAATATTTTTTAAATATTTGTAATTAGTAT
87930932 TTTAAAAATATTTTTTAAATATTTGTAATTAGTAT
1 TTTAAAAATATTTTTTAAATATTTGTAATTAGTAT
87930967 TTTAAAAATATTTTTT
1 TTTAAAAATATTTTTT
87930983 TATTTTTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 48 1.00
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (35 bp):
TTTAAAAATATTTTTTAAATATTTGTAATTAGTAT
Found at i:87931141 original size:13 final size:13
Alignment explanation
Indices: 87931125--87931152 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
87931115 TAGTTTCTCT
87931125 TTTTCAAAAGTAC
1 TTTTCAAAAGTAC
87931138 TTTTCAAAAGTAC
1 TTTTCAAAAGTAC
87931151 TT
1 TT
87931153 CTGAAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (13 bp):
TTTTCAAAAGTAC
Found at i:87931159 original size:13 final size:13
Alignment explanation
Indices: 87931128--87931161 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
87931118 TTTCTCTTTT
*
87931128 TCAAAAGTACTTT
1 TCAAAAGTACTTC
87931141 TCAAAAGTACTTC
1 TCAAAAGTACTTC
*
87931154 TGAAAAGT
1 TCAAAAGT
87931162 TAAAAATTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (13 bp):
TCAAAAGTACTTC
Found at i:87932665 original size:30 final size:28
Alignment explanation
Indices: 87932627--87932705 Score: 72
Period size: 30 Copynumber: 2.8 Consensus size: 28
87932617 AACATTTCGC
87932627 TATT-ATATTACTATTATTTTATTTTAT
1 TATTAATATTACTATTATTTTATTTTAT
* * *
87932654 TGGTTGAATATT-GTATAACTTTTATTTTAT
1 T-ATT-AATATTACTATTA-TTTTATTTTAT
* *
87932684 TATTAATTTTACTACTATTTTA
1 TATTAATATTACTATTATTTTA
87932706 GAGATATTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
27 1 0.03
28 12 0.31
29 9 0.23
30 17 0.44
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (28 bp):
TATTAATATTACTATTATTTTATTTTAT
Found at i:87938909 original size:37 final size:40
Alignment explanation
Indices: 87938813--87938952 Score: 133
Period size: 40 Copynumber: 3.5 Consensus size: 40
87938803 AACACACTAG
**
87938813 TTTGGCACCCAGTGTCTCATCGGATAATTCGAAGTAATAA
1 TTTGGCACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
* *
87938853 TTTGACACCCAGTGTCTCATCGGCTAAACCGAAGT-A-AA
1 TTTGGCACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
* * * ** *
87938891 -TTGGCACCCAGTGCCTCATCGAATTAATCTAAAGTAGTAA
1 TTTGGCACCCAGTGTCTCATCGGA-TAAACCGAAGTAATAA
* * *
87938931 ATTGACACACAGTGTCTCATCG
1 TTTGGCACCCAGTGTCTCATCG
87938953 ACTCGAAGTC
Statistics
Matches: 81, Mismatches: 15, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
37 19 0.23
38 10 0.12
39 1 0.01
40 33 0.41
41 18 0.22
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (40 bp):
TTTGGCACCCAGTGTCTCATCGGATAAACCGAAGTAATAA
Found at i:87943534 original size:43 final size:43
Alignment explanation
Indices: 87943487--87943609 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 43
87943477 TATCACATTT
* *
87943487 CGATGTCACTGTCCCACACAGGGTCTTACACG-AAGTCG-ATTAA
1 CGATGTCACTGTCCCATACAGGGTCTTACACGTAA-TCGCAAT-A
* * *
87943530 CGATGCCGA-TGTCCTATACAAGGTCTTACACGTAATCGCAATA
1 CGATGTC-ACTGTCCCATACAGGGTCTTACACGTAATCGCAATA
* *
87943573 CAATGTCACTGTCCCATACAGGGTCTTACATGTAATC
1 CGATGTCACTGTCCCATACAGGGTCTTACACGTAATC
87943610 ACATCTCGGT
Statistics
Matches: 66, Mismatches: 10, Indels: 8
0.79 0.12 0.10
Matches are distributed among these distances:
42 1 0.02
43 60 0.91
44 5 0.08
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (43 bp):
CGATGTCACTGTCCCATACAGGGTCTTACACGTAATCGCAATA
Found at i:87962836 original size:13 final size:13
Alignment explanation
Indices: 87962820--87962859 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
87962810 CATGCCTGTG
87962820 AAAATAAAATAAT-
1 AAAATAAAA-AATA
87962833 AAAATAAAAAATA
1 AAAATAAAAAATA
87962846 AAAAT-AAAAATA
1 AAAATAAAAAATA
87962858 AA
1 AA
87962860 GAACACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.46
13 14 0.54
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:87962847 original size:12 final size:12
Alignment explanation
Indices: 87962820--87962859 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
87962810 CATGCCTGTG
87962820 AAAATAAAATAAT
1 AAAATAAAA-AAT
87962833 AAAATAAAAAAT
1 AAAATAAAAAAT
87962845 AAAA-ATAAAAAT
1 AAAATA-AAAAAT
87962857 AAA
1 AAA
87962860 GAACACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 1 0.04
12 16 0.62
13 9 0.35
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
AAAATAAAAAAT
Found at i:87967933 original size:19 final size:19
Alignment explanation
Indices: 87967909--87967949 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
87967899 TCCCAAAATA
87967909 CATTATTTCAAAGGACAAG
1 CATTATTTCAAAGGACAAG
87967928 CATTATTTCAAAGGACAAG
1 CATTATTTCAAAGGACAAG
87967947 CAT
1 CAT
87967950 CATTCAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.17, G:0.15, T:0.27
Consensus pattern (19 bp):
CATTATTTCAAAGGACAAG
Found at i:87968450 original size:20 final size:20
Alignment explanation
Indices: 87968425--87968465 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
87968415 ATGGCAAGAT
*
87968425 TTGTCCCATCATAGACATCC
1 TTGTCCCATCATAAACATCC
*
87968445 TTGTCCCGTCATAAACATCC
1 TTGTCCCATCATAAACATCC
87968465 T
1 T
87968466 CACACATTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.24, C:0.34, G:0.10, T:0.32
Consensus pattern (20 bp):
TTGTCCCATCATAAACATCC
Found at i:87969151 original size:27 final size:31
Alignment explanation
Indices: 87969120--87969176 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 31
87969110 AAAATTGTAT
87969120 AATTTTAATTA-TA-T-TTAT-TTTATTAAA
1 AATTTTAATTATTAGTCTTATATTTATTAAA
*
87969147 AATTTTCATTATTAGTCTTATATTTATTAA
1 AATTTTAATTATTAGTCTTATATTTATTAA
87969177 CCCTTAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 10 0.40
28 2 0.08
29 1 0.04
30 4 0.16
31 8 0.32
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (31 bp):
AATTTTAATTATTAGTCTTATATTTATTAAA
Found at i:87970877 original size:26 final size:27
Alignment explanation
Indices: 87970848--87970898 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
87970838 AGGACTTGAG
*
87970848 TTTTTAAATTTATATT-T-GTTTTTTGT
1 TTTTTAAACTTA-ATTATAGTTTTTTGT
87970874 TTTTTAAACTTAATTATAGTTTTTT
1 TTTTTAAACTTAATTATAGTTTTTT
87970899 TATCAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 3 0.14
26 12 0.55
27 7 0.32
ACGTcount: A:0.24, C:0.02, G:0.06, T:0.69
Consensus pattern (27 bp):
TTTTTAAACTTAATTATAGTTTTTTGT
Found at i:87981782 original size:18 final size:19
Alignment explanation
Indices: 87981759--87981794 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
87981749 GAGAATAGAA
87981759 GAGAAGAAAG-AAAGAAAG
1 GAGAAGAAAGAAAAGAAAG
87981777 GAGAAGAAAGAAAAGAAA
1 GAGAAGAAAGAAAAGAAA
87981795 AGATAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (19 bp):
GAGAAGAAAGAAAAGAAAG
Found at i:87985076 original size:131 final size:129
Alignment explanation
Indices: 87984776--87985083 Score: 321
Period size: 129 Copynumber: 2.4 Consensus size: 129
87984766 TATTCAATTG
* * * * *
87984776 TTTTGGACAAATGAAAAAGCGCAACCCAGCACGATAGGGCTCGATTCTCAAATCGCCAAATATCA
1 TTTTGAACAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCA
** * * *
87984841 AACATCGCCTTCATTTTGAAAGATCTTAGAAAATGTGAGTGAAATTCGAAGGGATCTTCAATTA
66 AACATCGCCTTCATTTTGAAAGATCTTAGAAAACATGAGTGAAATTCAAAGGAATCTTCAATCA
* * * **
87984905 TTTTGAACCAATGAAAAAGCGCAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATTG
1 TTTTGAACAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCA
* * * * * ** * *
87984970 AACATCGTCTTCGTTTTTAAATATTTTTTATAAACATGAGTGAGAATAT-AAAGGAATGTTCGAT
66 AACATCGCCTTCATTTTGAAAGATCTTAGA-AAACATGAGTGA-AAT-TCAAAGGAATCTTCAAT
*
87985034 CG
128 CA
* * * *
87985036 TTTTGAGCAAACGAGAAATCACAACCCAGCACGATAGGGCATGATTCT
1 TTTTGAACAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCT
87985084 TGAATTGTCA
Statistics
Matches: 148, Mismatches: 28, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
129 82 0.55
130 10 0.07
131 55 0.37
132 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (129 bp):
TTTTGAACAAACGAAAAAGCACAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATCA
AACATCGCCTTCATTTTGAAAGATCTTAGAAAACATGAGTGAAATTCAAAGGAATCTTCAATCA
Found at i:87986189 original size:22 final size:23
Alignment explanation
Indices: 87986164--87986230 Score: 64
Period size: 27 Copynumber: 2.7 Consensus size: 23
87986154 AAGAAAAGAA
87986164 AATTTAAAGTAAATAAT-AAAAC
1 AATTTAAAGTAAATAATAAAAAC
*
87986186 AATTTAAAATGAATAATACATAAAAAC
1 AATTT-AAA-GTA-AATA-ATAAAAAC
*
87986213 AAGTTTAAAATAAATAAT
1 AA-TTTAAAGTAAATAAT
87986231 GTATAAAGCA
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
22 5 0.14
23 3 0.08
24 4 0.11
25 8 0.22
26 3 0.08
27 10 0.28
28 3 0.08
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.28
Consensus pattern (23 bp):
AATTTAAAGTAAATAATAAAAAC
Found at i:87986236 original size:28 final size:27
Alignment explanation
Indices: 87986181--87986348 Score: 84
Period size: 26 Copynumber: 6.5 Consensus size: 27
87986171 AGTAAATAAT
*
87986181 AAAACAATTTAAAATGAATAATACATA
1 AAAACAATTTAAAATAAATAATACATA
**
87986208 AAAACAAGTTTAAAATAAATAATGTAT-
1 AAAACAA-TTTAAAATAAATAATACATA
* ** * * *
87986235 AAAGCAACCTAAACTAAAAAAAACATA
1 AAAACAATTTAAAATAAATAATACATA
** * * **
87986262 AAAA-GGTTTCAAATAAAGAATGTATA
1 AAAACAATTTAAAATAAATAATACATA
87986288 AAAAC---TTAAAATAAATAATAC-TA
1 AAAACAATTTAAAATAAATAATACATA
* **
87986311 AAGA-AGCTTAAAATAAATAAATACA-A
1 AAAACAATTTAAAATAAAT-AATACATA
*
87986337 AAGA-AATTTAAA
1 AAAACAATTTAAA
87986349 GGTGAATAAC
Statistics
Matches: 104, Mismatches: 29, Indels: 17
0.69 0.19 0.11
Matches are distributed among these distances:
23 5 0.05
24 12 0.12
25 11 0.11
26 44 0.42
27 16 0.15
28 16 0.15
ACGTcount: A:0.62, C:0.08, G:0.07, T:0.23
Consensus pattern (27 bp):
AAAACAATTTAAAATAAATAATACATA
Found at i:87986323 original size:25 final size:26
Alignment explanation
Indices: 87986292--87986341 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
87986282 TGTATAAAAA
*
87986292 CTTAAAATAAAT-AATACTAAAGAAG
1 CTTAAAATAAATAAATACAAAAGAAG
87986317 CTTAAAATAAATAAATACAAAAGAA
1 CTTAAAATAAATAAATACAAAAGAA
87986342 ATTTAAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.64, C:0.08, G:0.06, T:0.22
Consensus pattern (26 bp):
CTTAAAATAAATAAATACAAAAGAAG
Found at i:87986693 original size:42 final size:42
Alignment explanation
Indices: 87986635--87986721 Score: 165
Period size: 42 Copynumber: 2.1 Consensus size: 42
87986625 CATAATATAA
*
87986635 AAAAAACAAGCTTTGAATAAATGAATAATAAAATAGTTTCCT
1 AAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
87986677 AAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
1 AAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
87986719 AAA
1 AAA
87986722 GAATGAAATA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (42 bp):
AAAAAACAAGCTTTGAATAAATAAATAATAAAATAGTTTCCT
Found at i:87987656 original size:19 final size:19
Alignment explanation
Indices: 87987621--87987658 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
87987611 GCCGAAAGTA
*
87987621 AAAATAAAAAAGGAAAAAT
1 AAAATAAAAAAGAAAAAAT
87987640 AAAATAAAAATA-AAAAAAT
1 AAAATAAAAA-AGAAAAAAT
87987659 GCTCTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 16 0.94
20 1 0.06
ACGTcount: A:0.82, C:0.00, G:0.05, T:0.13
Consensus pattern (19 bp):
AAAATAAAAAAGAAAAAAT
Found at i:87987936 original size:7 final size:7
Alignment explanation
Indices: 87987924--87987953 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
87987914 GGGCTTGTTG
87987924 TTTGGGT
1 TTTGGGT
87987931 TTTGGGT
1 TTTGGGT
87987938 TTTGGGT
1 TTTGGGT
*
87987945 TATGGGT
1 TTTGGGT
87987952 TT
1 TT
87987954 GCTTAGGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.03, C:0.00, G:0.40, T:0.57
Consensus pattern (7 bp):
TTTGGGT
Found at i:87990979 original size:8 final size:8
Alignment explanation
Indices: 87990966--87990994 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
87990956 TTATGTTTAG
87990966 TATATTAT
1 TATATTAT
87990974 TATATTAT
1 TATATTAT
87990982 TATATTAT
1 TATATTAT
87990990 TATAT
1 TATAT
87990995 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:87991027 original size:5 final size:5
Alignment explanation
Indices: 87991017--87991072 Score: 105
Period size: 5 Copynumber: 11.4 Consensus size: 5
87991007 TTATGTTTTA
87991017 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
87991067 A-TAT AT
1 ATTAT AT
87991073 AAACTAAAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.08
5 46 0.92
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:87992268 original size:15 final size:15
Alignment explanation
Indices: 87992248--87992304 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
87992238 CGATGAATTT
87992248 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
87992263 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
87992278 ATTGAATTTATATTG
1 ATTGAATTTATATTG
87992293 ATTGAA-TTATAT
1 ATTGAATTTATAT
87992305 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:87992724 original size:21 final size:23
Alignment explanation
Indices: 87992678--87992726 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
87992668 TTTATCGATC
87992678 GGCACCTCGTGTGTCGTATTTCA
1 GGCACCTCGTGTGTCGTATTTCA
87992701 GGCACCTCGTGTGTCGT-TTT-A
1 GGCACCTCGTGTGTCGTATTTCA
87992722 GGCAC
1 GGCAC
87992727 TTTATGTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 6 0.23
22 3 0.12
23 17 0.65
ACGTcount: A:0.12, C:0.27, G:0.29, T:0.33
Consensus pattern (23 bp):
GGCACCTCGTGTGTCGTATTTCA
Found at i:87996467 original size:8 final size:8
Alignment explanation
Indices: 87996454--87996482 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
87996444 TTATGTTTAG
87996454 TATATTAT
1 TATATTAT
87996462 TATATTAT
1 TATATTAT
87996470 TATATTAT
1 TATATTAT
87996478 TATAT
1 TATAT
87996483 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:87996515 original size:5 final size:5
Alignment explanation
Indices: 87996505--87996545 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
87996495 TTATGTTTTA
87996505 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
87996546 AAACTAAAGA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:87997743 original size:15 final size:15
Alignment explanation
Indices: 87997723--87997779 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
87997713 CGATGAATTT
87997723 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
87997738 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
87997753 ATTGAATTTATATTG
1 ATTGAATTTATATTG
87997768 ATTGAA-TTATAT
1 ATTGAATTTATAT
87997780 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:87998189 original size:23 final size:22
Alignment explanation
Indices: 87998162--87998216 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
87998152 CAGGTACTTT
87998162 ATGTGTCGTATTTCAGGCACCTC
1 ATGTGTCGTATTT-AGGCACCTC
* * *
87998185 GTGTGTCGT-TTTAGGCACTTT
1 ATGTGTCGTATTTAGGCACCTC
87998206 ATGTGTCGTAT
1 ATGTGTCGTAT
87998217 ACTGATCAGG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 15 0.56
22 4 0.15
23 8 0.30
ACGTcount: A:0.15, C:0.18, G:0.25, T:0.42
Consensus pattern (22 bp):
ATGTGTCGTATTTAGGCACCTC
Found at i:87998210 original size:21 final size:23
Alignment explanation
Indices: 87998151--87998216 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
87998141 GCTTTATCGA
*
87998151 TCAGGTACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
87998174 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACTTTATGTGTCGTATT
87998196 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
87998217 ACTGATCAGG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
21 15 0.43
22 4 0.11
23 16 0.46
ACGTcount: A:0.15, C:0.18, G:0.24, T:0.42
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:87999535 original size:18 final size:18
Alignment explanation
Indices: 87999512--87999548 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
87999502 ATCAATTAAT
87999512 AACAAGTTAAATTTTATC
1 AACAAGTTAAATTTTATC
87999530 AACAAGTTAAATTTTATC
1 AACAAGTTAAATTTTATC
87999548 A
1 A
87999549 CCTATTAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.05, T:0.38
Consensus pattern (18 bp):
AACAAGTTAAATTTTATC
Found at i:88001193 original size:30 final size:30
Alignment explanation
Indices: 88001153--88001209 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
88001143 TTGTTTTTTT
*
88001153 TATTTTATTTTCGTATTTTATTTTTTAAAA
1 TATTCTATTTTCGTATTTTATTTTTTAAAA
88001183 TATTCTATTTTCGTATTTTATTTTTTA
1 TATTCTATTTTCGTATTTTATTTTTTA
88001210 TATTATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.68
Consensus pattern (30 bp):
TATTCTATTTTCGTATTTTATTTTTTAAAA
Found at i:88001193 original size:150 final size:149
Alignment explanation
Indices: 88000717--88001526 Score: 1118
Period size: 150 Copynumber: 5.5 Consensus size: 149
88000707 TATTTTGGTA
* * *
88000717 TTTATTTTATTTACGGATTTTATTTATTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
*
88000782 TTTAGTAC-TAATGTTTCAAATATATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
* *
88000846 GATTTTGGCC------CTT
131 GGTTTTGGCCTTTGTTTTT
* * * *
88000859 TTTATTTCATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTGTTTTTTTATAGTA
1 TTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTT-ATTTTTTATATTA
*
88000924 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAACTC
65 TTTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTC
*
88000989 TGGTTTTGGCC-TT-TTGTT
130 TGGTTTTGGCCTTTGTTTTT
**
88001007 TTTA--TTA--TT--TATTTTATTTTTTAAAATATGTTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
* *
88001066 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTACAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
88001131 GGTTTTGGCCATTTGTTTTT
131 GGTTTTGGCC-TTTGTTTTT
*
88001151 TTTATTTTATTTTCGTATTTTATTTTTTAAAATATTCTATTTTCGTATTTTATTTTTTATATTAT
1 TTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
*
88001216 TTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
66 TTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
*
88001281 GATTTTGGCCCTTTGTTTTTATT
131 GGTTTTGG-CCTTTG--TTT-TT
* * * * *
88001304 ATTTATTCTATTTTCGGATTTTATTTTTTAAAATATCCTATTTTCTTATTTTA-TTTGTATATTA
1 -TTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTA
** * *
88001368 TTTTAGTATGTAATGTTTTCAAATGTATAATTTTAGT-TTTTTTATATTAATTTAGTAAAGAACT
65 TTTTAGTACATAATG-TTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACT
88001432 CTGGTTTTGGCCCTTTGTTCTTAT
129 CTGGTTTTGG-CCTTTGTT-TT-T
*
88001456 TTT-TTTTATTTTCGTATTTTATTTTTTAAAAATAAACTATTTTCGTATTTTA-TTTTTATATTA
1 TTTATTTTATTTTCGTATTTTATTTTTT-AAAATATACTATTTTCGTATTTTATTTTTTATATTA
88001519 TTTTAGTA
65 TTTTAGTA
88001527 AAAAACCCGC
Statistics
Matches: 603, Mismatches: 41, Indels: 39
0.88 0.06 0.06
Matches are distributed among these distances:
141 86 0.14
142 80 0.13
143 22 0.04
144 73 0.12
146 5 0.01
148 8 0.01
150 143 0.24
151 47 0.08
152 5 0.01
153 66 0.11
154 68 0.11
ACGTcount: A:0.27, C:0.07, G:0.08, T:0.59
Consensus pattern (149 bp):
TTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTAT
TTTAGTACATAATGTTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCT
GGTTTTGGCCTTTGTTTTT
Found at i:88001274 original size:291 final size:294
Alignment explanation
Indices: 88000732--88001526 Score: 1109
Period size: 304 Copynumber: 2.7 Consensus size: 294
88000722 TTTATTTACG
*
88000732 GATTTTATTTATTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTACTAATGTT
1 GATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTACTAATGTT
* *
88000797 TCAAATATATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTCTGATTTTGGCC------
66 TCAAATGTATTATTTTAGT-TTTTTTATATTAATTTAGT-AAAAACTCTGGTTTTGGCCTTTGTT
* * * *
88000856 CTTTTTATTTCATTTTCGAATTTTATTTTTTAAAATATACTATTTTCGTATTTTGTTTTTTTATA
129 TTTTTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTT-ATTTTTTATA
* * *
88000921 GTATTTTAGTACATAATGTTTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTAAAAAA
193 TTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAA
* *
88000986 CTCTGGTTTTGG-CC-TTTTGTT-TTTA-T-TA-TTT
258 CTCTGATTTTGGCCCTTTTTATTATTTATTCTATTTT
**
88001017 -ATTTTATTTTTTAAAATATGTTATTTTCGTATTTTATTTTTTATATTATTTTAGTACATAATGT
1 GATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTAC-TAATGT
88001081 TTCAAATGTATTATTTTAGTGTTTTTTATATTAATTTAGTACAAAACTCTGGTTTTGGCCATTTG
65 TTCAAATGTATTATTTTAGT-TTTTTTATATTAATTTAGTA-AAAACTCTGGTTTTGGCC-TTTG
*
88001146 TTTTTTTTATTTTATTTTCGTATTTTATTTTTTAAAATATTCTATTTTCGTATTTTATTTTTTAT
127 TTTTTTTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTAT
88001211 ATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAA
192 ATTATTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAA
88001276 ACTCTGATTTTGGCCCTTTGTTTTTATTATTTATTCTATTTT
257 ACTCTGATTTTGGCCC----TTTTTATTATTTATTCTATTTT
* * * *
88001318 CGGATTTTATTTTTTAAAATATCCTATTTTCTTATTTTA-TTTGTATATTATTTTAGTATGTAAT
1 --GATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTA-CTAAT
*
88001382 GTTTTCAAATGTATAATTTTAGTTTTTTTATATTAATTTAGTAAAGAACTCTGGTTTTGGCCCTT
63 G-TTTCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAA-AACTCTGGTTTTGG-CCTT
*
88001447 TGTTCTTATTTT-TTTTATTTTCGTATTTTATTTTTTAAAAATAAACTATTTTCGTATTTTA-TT
125 TGTT-TT-TTTTATTTTATTTTCGTATTTTATTTTTT-AAAATATACTATTTTCGTATTTTATTT
88001510 TTTATATTATTTTAGTA
187 TTTATATTATTTTAGTA
88001527 AAAAACCCGC
Statistics
Matches: 457, Mismatches: 24, Indels: 39
0.88 0.05 0.08
Matches are distributed among these distances:
284 55 0.12
285 61 0.13
291 82 0.18
292 52 0.11
297 6 0.01
298 4 0.01
299 1 0.00
300 2 0.00
301 3 0.01
302 2 0.00
303 63 0.14
304 100 0.22
305 26 0.06
ACGTcount: A:0.27, C:0.07, G:0.08, T:0.59
Consensus pattern (294 bp):
GATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTATTTTAGTACTAATGTT
TCAAATGTATTATTTTAGTTTTTTTATATTAATTTAGTAAAAACTCTGGTTTTGGCCTTTGTTTT
TTTTATTTTATTTTCGTATTTTATTTTTTAAAATATACTATTTTCGTATTTTATTTTTTATATTA
TTTTAGTACATAATATTTCAAATGTATTATTTTAGTATTTTTTATATTAATTTAGTAAAAAACTC
TGATTTTGGCCCTTTTTATTATTTATTCTATTTT
Found at i:88001993 original size:27 final size:27
Alignment explanation
Indices: 88001963--88002018 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
88001953 TAATAATAAC
88001963 AATTAA-AA-TAAATAATTTATTTCCTTA
1 AATTAACAACTAAA-AA-TTATTTCCTTA
88001990 AATTAACAACTAAAAATTATTTCCTTA
1 AATTAACAACTAAAAATTATTTCCTTA
88002017 AA
1 AA
88002019 AAAATTACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 19 0.70
28 4 0.15
29 4 0.15
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (27 bp):
AATTAACAACTAAAAATTATTTCCTTA
Found at i:88002069 original size:20 final size:19
Alignment explanation
Indices: 88002046--88002089 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
88002036 CTTCCCTCCC
88002046 TCTTCTTCTCCTTCTCTTTT
1 TCTTCTTCTCCTTCT-TTTT
* **
88002066 TCTTTTTCTTTTTCTTTTT
1 TCTTCTTCTCCTTCTTTTT
88002085 TCTTC
1 TCTTC
88002090 CCTCACCGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (19 bp):
TCTTCTTCTCCTTCTTTTT
Found at i:88002077 original size:5 final size:6
Alignment explanation
Indices: 88002060--88002084 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
88002050 CTTCTCCTTC
88002060 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
88002085 TCTTCCCTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:88003005 original size:38 final size:39
Alignment explanation
Indices: 88002928--88003006 Score: 117
Period size: 38 Copynumber: 2.1 Consensus size: 39
88002918 TAAATTACAG
*
88002928 TTTAGAGTATTAGGGTTAATTGATTAAATTAGGGATTAA
1 TTTAGAGTATTAGGGTTAATTGATTAAATTAAGGATTAA
*
88002967 TTTAGGGT-TTAGGGTTAATTGATTAAATTTAAGG-TTAA
1 TTTAGAGTATTAGGGTTAATTGATTAAA-TTAAGGATTAA
88003005 TT
1 TT
88003007 GATACATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
38 25 0.68
39 12 0.32
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.44
Consensus pattern (39 bp):
TTTAGAGTATTAGGGTTAATTGATTAAATTAAGGATTAA
Found at i:88003779 original size:128 final size:127
Alignment explanation
Indices: 88003552--88003791 Score: 329
Period size: 128 Copynumber: 1.9 Consensus size: 127
88003542 CGAGCAGATG
* * * * **
88003552 TTTCTGAACAAATATTGTTGAATAACGCTTCAAGCAAGATGCATTGTCAACAAAATTTCTGGAAA
1 TTTCTGAACAAATAGTATTGAATAACGCTTCAAACAAGATGCACTGTCAACAAAATTTCTAAAAA
88003617 AAGCTCCCACATGGACACTCTTTTGCTACAGTAGTTCGTAGAAAAATAATTTTGAGTAGACA
66 AAGCTCCCACATGGACACTCTTTTGCTACAGTAGTTCGTAGAAAAATAATTTTGAGTAGACA
* * * *
88003679 TTTCTGAACAAATAGTATTGAA-AATGCTTCAAACAGGATGCACTGTCAGCAAAATTTTTTAAAA
1 TTTCTGAACAAATAGTATTGAATAACGCTTCAAACAAGATGCACTGTCAACAAAA-TTTCT-AAA
* * * *
88003743 AAAAGCTCTCACGTGGACGCTCTTTTGCTGCAGTAGTTCGTAGAAAAAT
64 AAAAGCTCCCACATGGACACTCTTTTGCTACAGTAGTTCGTAGAAAAAT
88003792 GAGGCTATAA
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
126 27 0.28
127 24 0.25
128 46 0.47
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.30
Consensus pattern (127 bp):
TTTCTGAACAAATAGTATTGAATAACGCTTCAAACAAGATGCACTGTCAACAAAATTTCTAAAAA
AAGCTCCCACATGGACACTCTTTTGCTACAGTAGTTCGTAGAAAAATAATTTTGAGTAGACA
Found at i:88008522 original size:48 final size:46
Alignment explanation
Indices: 88008447--88008580 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 46
88008437 ATGCAAACAT
* * * *
88008447 CATAAAGGAAAAAAAATAAAACAGTATTGAAATTGTAATTATAA-TTG
1 CATAAATGAAAAAATATCAAATAGTATTGAAATT-TAATTA-AATTTG
88008494 CATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTG
1 CATAAATGAA-AAAATATCAAATAGTATTG-AAATTTAATTAAATTTG
* *
88008542 CATAAATTAAAAAAATATCAAATAATATTGAAAATTTAA
1 CATAAA-TGAAAAAATATCAAATAGTATTG-AAATTTAA
88008581 AATTATCACT
Statistics
Matches: 76, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
47 11 0.14
48 57 0.75
49 8 0.11
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.31
Consensus pattern (46 bp):
CATAAATGAAAAAATATCAAATAGTATTGAAATTTAATTAAATTTG
Found at i:88010167 original size:69 final size:69
Alignment explanation
Indices: 88010049--88010256 Score: 265
Period size: 69 Copynumber: 3.0 Consensus size: 69
88010039 TGTATCATCT
* * * * * * *
88010049 TACAATTAAATACAAAAAGTTATATTACTCCACCACCACATCCAATTACACATATAAAAAGTGAC
1 TACAATTACATATAAAAAGTGATATTAGTCCACCACCACACCCATTTACACATAAAAAAAGTGAC
88010114 AACC
66 AACC
* * * * *
88010118 TATAATTACATATAAAAAGTGATATTAGTCCATCACCATACCCATTTACACATAGAAAAAGTGTC
1 TACAATTACATATAAAAAGTGATATTAGTCCACCACCACACCCATTTACACATAAAAAAAGTGAC
88010183 AACC
66 AACC
* *
88010187 TACAATTACATATAAAAAGTTG-TATTAGTTCACCACCACACGCATTTACACATAAAACAAAGTG
1 TACAATTACATATAAAAAG-TGATATTAGTCCACCACCACACCCATTTACACATAAAA-AAAGTG
88010251 ACAACC
64 ACAACC
88010257 CTTTATGGCA
Statistics
Matches: 119, Mismatches: 18, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
69 106 0.89
70 13 0.11
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (69 bp):
TACAATTACATATAAAAAGTGATATTAGTCCACCACCACACCCATTTACACATAAAAAAAGTGAC
AACC
Found at i:88027453 original size:58 final size:60
Alignment explanation
Indices: 88027350--88027465 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 60
88027340 TTGTTATTAA
*
88027350 ATTTTAATAATAATATTATTAAATATTATTTAATAAAAACAATAATACATAATTTAATCCT
1 ATTTTAATAATAATATTATTAAATATTAATT-ATAAAAACAATAATACATAATTTAATCCT
* * * *
88027411 ATTTTAATAA-ATTTATTATTAAATA-TAATT-TAACAATAATAATACATGATTTAAT
1 ATTTTAATAATA-ATATTATTAAATATTAATTATAAAAACAATAATACATAATTTAAT
88027466 AATATGAATT
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
58 22 0.45
60 5 0.10
61 22 0.45
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.44
Consensus pattern (60 bp):
ATTTTAATAATAATATTATTAAATATTAATTATAAAAACAATAATACATAATTTAATCCT
Found at i:88027477 original size:13 final size:13
Alignment explanation
Indices: 88027456--88027492 Score: 58
Period size: 12 Copynumber: 2.9 Consensus size: 13
88027446 ATAATAATAC
*
88027456 ATGATTTAATAAT
1 ATGAATTAATAAT
88027469 ATGAATTAAT-AT
1 ATGAATTAATAAT
88027481 ATGAATTAATAA
1 ATGAATTAATAA
88027493 AAATAATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 12 0.55
13 10 0.45
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (13 bp):
ATGAATTAATAAT
Found at i:88027482 original size:12 final size:12
Alignment explanation
Indices: 88027450--88027491 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
88027440 TTAACAATAA
* *
88027450 TAATACATGATT
1 TAATATATGAAT
88027462 TAATAATATGAAT
1 TAAT-ATATGAAT
88027475 TAATATATGAAT
1 TAATATATGAAT
88027487 TAATA
1 TAATA
88027492 AAAATAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.40
Consensus pattern (12 bp):
TAATATATGAAT
Found at i:88027500 original size:21 final size:21
Alignment explanation
Indices: 88027448--88027525 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 21
88027438 ATTTAACAAT
* *
88027448 AATAATACATGATTTAATAATA
1 AATAATATATGAATTAATAA-A
88027470 TGAATTAATATATGAATTAATAAA
1 --AA-TAATATATGAATTAATAAA
* *
88027494 AATAATATATAATATTACAAAAA
1 AATAATATATGA-ATTA-ATAAA
88027517 AATAATATA
1 AATAATATA
88027526 CAACCTACTT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
21 9 0.19
22 6 0.13
23 13 0.28
24 3 0.06
25 16 0.34
ACGTcount: A:0.59, C:0.03, G:0.04, T:0.35
Consensus pattern (21 bp):
AATAATATATGAATTAATAAA
Found at i:88027517 original size:23 final size:21
Alignment explanation
Indices: 88027475--88027525 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 21
88027465 TAATATGAAT
* *
88027475 TAATATATGAATTAATAAAAA
1 TAATATATAAATTAAAAAAAA
88027496 TAATATATAATATTACAAAAAAA
1 TAATATATAA-ATTA-AAAAAAA
88027519 TAATATA
1 TAATATA
88027526 CAACCTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
21 9 0.35
22 4 0.15
23 13 0.50
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
TAATATATAAATTAAAAAAAA
Found at i:88030525 original size:16 final size:16
Alignment explanation
Indices: 88030463--88030535 Score: 85
Period size: 16 Copynumber: 4.6 Consensus size: 16
88030453 CGTTTAGTTG
*
88030463 GCTGTAATGGAATA-A
1 GCTGTAATAGAATAGA
* * *
88030478 GGCTATAATTGAATAAA
1 -GCTGTAATAGAATAGA
88030495 GCTGTAATAGAATAGA
1 GCTGTAATAGAATAGA
88030511 GCTGTAATAGAATAGA
1 GCTGTAATAGAATAGA
*
88030527 GTTGTAATA
1 GCTGTAATA
88030536 AGTAATTCAA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
16 49 0.98
17 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.29
Consensus pattern (16 bp):
GCTGTAATAGAATAGA
Found at i:88030740 original size:14 final size:14
Alignment explanation
Indices: 88030704--88030744 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
88030694 GTTATTAAAT
*
88030704 TTTAAT-AAAATTA
1 TTTAATAAAAATAA
*
88030717 -TTATTAAAAATAA
1 TTTAATAAAAATAA
88030730 TTTAATAAAAATAA
1 TTTAATAAAAATAA
88030744 T
1 T
88030745 AAATAGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 4 0.17
13 6 0.26
14 13 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TTTAATAAAAATAA
Found at i:88030802 original size:17 final size:17
Alignment explanation
Indices: 88030780--88030812 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
88030770 AATTATTATT
88030780 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
88030797 AAATATAATTTAATAA
1 AAATATAATTTAATAA
88030813 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:88035594 original size:30 final size:31
Alignment explanation
Indices: 88035558--88035626 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 31
88035548 GGTTTCATTT
*
88035558 CAGTCACTCAAC-TTTTAAAAAA-TAACAAAA
1 CAGTCACT-AACATTATAAAAAAGTAACAAAA
**
88035588 CAGTCACTAACATTATAAAAAAGTGGCAAAA
1 CAGTCACTAACATTATAAAAAAGTAACAAAA
88035619 CAGTCACT
1 CAGTCACT
88035627 GATTAACAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 3 0.09
30 17 0.50
31 14 0.41
ACGTcount: A:0.49, C:0.20, G:0.09, T:0.22
Consensus pattern (31 bp):
CAGTCACTAACATTATAAAAAAGTAACAAAA
Found at i:88038022 original size:25 final size:27
Alignment explanation
Indices: 88037985--88038037 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
88037975 TCAAACATGC
88037985 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
* *
88038011 ATTTCAGT-AATTTATCTCCTAGGGGT
1 ATTTAAGTCAATTTAACTCCTAGGGGT
88038037 A
1 A
88038038 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (27 bp):
ATTTAAGTCAATTTAACTCCTAGGGGT
Found at i:88039373 original size:26 final size:26
Alignment explanation
Indices: 88039343--88039502 Score: 221
Period size: 26 Copynumber: 6.2 Consensus size: 26
88039333 TGAAATTCCC
* *
88039343 ATCATGGAACATCTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
88039369 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * * * *
88039395 ATCATGAAATATTTACTTAATCCGTT
1 ATCATGGAACATTTACCTAACCCATT
88039421 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
88039447 ATCATGGAATATTTACTTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
88039473 ATCATGGAACATTTACCCAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
88039499 ATCA
1 ATCA
88039503 ATTTGTACCA
Statistics
Matches: 115, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 115 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:88039423 original size:52 final size:52
Alignment explanation
Indices: 88039364--88039502 Score: 251
Period size: 52 Copynumber: 2.7 Consensus size: 52
88039354 TCTATCTAAC
88039364 CCATTATCATGGAACATTTACCTAACCCATTATCATGAAATATTTACTTAAT
1 CCATTATCATGGAACATTTACCTAACCCATTATCATGAAATATTTACTTAAT
* *
88039416 CCGTTATCATGGAACATTTACCTAACCCATTATCATGGAATATTTACTTAAT
1 CCATTATCATGGAACATTTACCTAACCCATTATCATGAAATATTTACTTAAT
*
88039468 CCATTATCATGGAACATTTACCCAACCCATTATCA
1 CCATTATCATGGAACATTTACCTAACCCATTATCA
88039503 ATTTGTACCA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 83 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.35
Consensus pattern (52 bp):
CCATTATCATGGAACATTTACCTAACCCATTATCATGAAATATTTACTTAAT
Found at i:88045060 original size:26 final size:26
Alignment explanation
Indices: 88045030--88045137 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
88045020 TGAAATTCCC
*
88045030 ATCATGGAACATCTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
88045056 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * * *
88045082 ATTATGGAATATTTACTTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
88045108 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
88045134 ATCA
1 ATCA
88045138 ATTTGTACCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:88049468 original size:19 final size:20
Alignment explanation
Indices: 88049446--88049485 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
88049436 ATTTTAATAT
*
88049446 ATGTATATCA-TTTTACCAC
1 ATGTATATCACTATTACCAC
*
88049465 ATGTATTTCACTATTACCAC
1 ATGTATATCACTATTACCAC
88049485 A
1 A
88049486 CACTTGTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.40
Consensus pattern (20 bp):
ATGTATATCACTATTACCAC
Found at i:88052571 original size:6 final size:6
Alignment explanation
Indices: 88052562--88052600 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
88052552 AAGGGGAATT
88052562 AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGG
1 AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGGGGA AGG
88052601 AGAAAGCGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
AGGGGA
Found at i:88056074 original size:11 final size:11
Alignment explanation
Indices: 88056058--88056082 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
88056048 GAATTACAGT
88056058 AAAAAAAAAAG
1 AAAAAAAAAAG
88056069 AAAAAAAAAAG
1 AAAAAAAAAAG
88056080 AAA
1 AAA
88056083 TACAGTTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:88058954 original size:20 final size:20
Alignment explanation
Indices: 88058929--88058969 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
88058919 AAGTTCACCA
88058929 TCATTTCATTCTCCAAAAGG
1 TCATTTCATTCTCCAAAAGG
88058949 TCATTTCATTCTCCAAAAGG
1 TCATTTCATTCTCCAAAAGG
88058969 T
1 T
88058970 TTATGATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATTTCATTCTCCAAAAGG
Found at i:88060328 original size:13 final size:13
Alignment explanation
Indices: 88060307--88060367 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
88060297 TTGGTAATGT
*
88060307 TTTTTAAAAGTAA
1 TTTTAAAAAGTAA
88060320 TTTTAAAAAGT-A
1 TTTTAAAAAGTAA
* *
88060332 TTGTGAAAAATTAA
1 TT-TTAAAAAGTAA
* * *
88060346 TTTTGAGAAGTAC
1 TTTTAAAAAGTAA
88060359 TTTTAAAAA
1 TTTTAAAAA
88060368 ATTTGGTTTA
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
12 3 0.08
13 30 0.83
14 3 0.08
ACGTcount: A:0.46, C:0.02, G:0.11, T:0.41
Consensus pattern (13 bp):
TTTTAAAAAGTAA
Found at i:88063698 original size:40 final size:39
Alignment explanation
Indices: 88063643--88063832 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
88063633 CAATCACCAC
* *
88063643 CACAAAGCATGCGGGACTTTAAGCCCGGATATAATACTC-G
1 CACAAAGCCTGCGGGACTTT-AGCCCGGATATAACA-TCAG
*
88063683 CACAAGGCCTGCGGGACTTTAGCCCGGATATAACATCAG
1 CACAAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
* * * * *
88063722 CACGAATGCCTTCGGGAC-TTGGCCTGGATATAACACCAG
1 CAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
* * * * *
88063761 CACGAATGCCTTCGGGAC-TTGGCCTGGATATAACACCAG
1 CAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
* * * *
88063800 CACGAATGCCTTCGGGAC-TTGGCCCGAATATAA
1 CAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
88063833 TTCTCCATTA
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 106 0.77
40 30 0.22
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (39 bp):
CACAAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
Found at i:88063751 original size:39 final size:39
Alignment explanation
Indices: 88063665--88063832 Score: 232
Period size: 39 Copynumber: 4.3 Consensus size: 39
88063655 GGGACTTTAA
* * * *
88063665 GCCCGGATATAATACTC-GCAC-AAGGCCTGCGGGACTTTA
1 GCCCGGATATAACAC-CAGCACGAATGCCTTCGGGAC-TTG
*
88063704 GCCCGGATATAACATCAGCACGAATGCCTTCGGGACTTG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
*
88063743 GCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
*
88063782 GCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
*
88063821 GCCCGAATATAA
1 GCCCGGATATAA
88063833 TTCTCCATTA
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 105 0.89
40 12 0.10
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (39 bp):
GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
Found at i:88066451 original size:2 final size:2
Alignment explanation
Indices: 88066444--88066547 Score: 208
Period size: 2 Copynumber: 52.0 Consensus size: 2
88066434 GTATTAGCAT
88066444 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
88066486 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
88066528 CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA
88066548 TATATATATA
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 102 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:88066732 original size:26 final size:26
Alignment explanation
Indices: 88066693--88066742 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
88066683 ACAAAAATTC
88066693 CTTCTGAAATTAAACCGT-CACATATA
1 CTTCTGAAATTAAA-CGTACACATATA
88066719 CTTCTGAAGA-TAAACGTACACATA
1 CTTCTGAA-ATTAAACGTACACATA
88066743 GAATGCCTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 3 0.14
26 18 0.82
27 1 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
CTTCTGAAATTAAACGTACACATATA
Found at i:88069239 original size:40 final size:39
Alignment explanation
Indices: 88069184--88069373 Score: 154
Period size: 39 Copynumber: 4.8 Consensus size: 39
88069174 CAATCACTAC
* *
88069184 CACAAAGCATGCGGGACTTTAAGCCCGGATATAATACTC-G
1 CACAAAGCCTGCGGGACTTT-AGCCCGGATATAACA-TCAG
*
88069224 CACAAGGCCTGCGGGACTTTAGCCCGGATATAACATCAG
1 CACAAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
* * * * *
88069263 CACGAATGCCTTCGGGAC-TTGGCCTGGATATAACACCAG
1 CAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
* * * * *
88069302 CACGAATGCCTTCGGGAC-TTGGCCTGGATATAACACCAG
1 CAC-AAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
* * * *
88069341 CACGAATGCCTTCGGGAC-TTGGCCCGAATATAA
1 CAC-AAAGCCTGCGGGACTTTAGCCCGGATATAA
88069374 TTCTCCATTA
Statistics
Matches: 138, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 2 0.01
39 106 0.77
40 30 0.22
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (39 bp):
CACAAAGCCTGCGGGACTTTAGCCCGGATATAACATCAG
Found at i:88069292 original size:39 final size:39
Alignment explanation
Indices: 88069206--88069373 Score: 232
Period size: 39 Copynumber: 4.3 Consensus size: 39
88069196 GGGACTTTAA
* * * *
88069206 GCCCGGATATAATACTC-GCAC-AAGGCCTGCGGGACTTTA
1 GCCCGGATATAACAC-CAGCACGAATGCCTTCGGGAC-TTG
*
88069245 GCCCGGATATAACATCAGCACGAATGCCTTCGGGACTTG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
*
88069284 GCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
*
88069323 GCCTGGATATAACACCAGCACGAATGCCTTCGGGACTTG
1 GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
*
88069362 GCCCGAATATAA
1 GCCCGGATATAA
88069374 TTCTCCATTA
Statistics
Matches: 118, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
38 1 0.01
39 105 0.89
40 12 0.10
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (39 bp):
GCCCGGATATAACACCAGCACGAATGCCTTCGGGACTTG
Found at i:88071959 original size:51 final size:50
Alignment explanation
Indices: 88071904--88072036 Score: 169
Period size: 51 Copynumber: 2.6 Consensus size: 50
88071894 CAAAACACCA
88071904 TTTGTGAACAAGCCACCACTGATTTGCAAATAAACTACCACTGATA-ACACT
1 TTTGTGAACAAGCCACCACTGATTTGCAAATAAACTACCACTGATATA-A-T
* * * *
88071955 TTTGTGAACAAGCCACCATTGAATTGCAGATATACTACCACTGATATAAT
1 TTTGTGAACAAGCCACCACTGATTTGCAAATAAACTACCACTGATATAAT
* * * *
88072005 TTTATGGACATGCCACCACTAATTTGCAAATA
1 TTTGTGAACAAGCCACCACTGATTTGCAAATA
88072037 TATTGCCACT
Statistics
Matches: 70, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
50 26 0.37
51 43 0.61
52 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.29
Consensus pattern (50 bp):
TTTGTGAACAAGCCACCACTGATTTGCAAATAAACTACCACTGATATAAT
Found at i:88081323 original size:12 final size:13
Alignment explanation
Indices: 88081288--88081316 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
88081278 ATAAAACAAT
88081288 TAAAATAAATAAC
1 TAAAATAAATAAC
88081301 TAAAATAAATAA-
1 TAAAATAAATAAC
88081313 TAAA
1 TAAA
88081317 TCAAATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 4 0.25
13 12 0.75
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAATAAATAAC
Found at i:88088633 original size:25 final size:25
Alignment explanation
Indices: 88088586--88088633 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
88088576 AAGCATAAAA
* * **
88088586 TTAATTATTTGTATTTTTTTTTGCT
1 TTAATTATTTGAATATTAGTTTGCT
88088611 TTAATTATTTGAATATTAGTTTG
1 TTAATTATTTGAATATTAGTTTG
88088634 ATTAATATCG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.23, C:0.02, G:0.10, T:0.65
Consensus pattern (25 bp):
TTAATTATTTGAATATTAGTTTGCT
Found at i:88091660 original size:8 final size:8
Alignment explanation
Indices: 88091647--88091702 Score: 51
Period size: 8 Copynumber: 6.6 Consensus size: 8
88091637 TAAATTAAAT
88091647 TTTTTATA
1 TTTTTATA
88091655 TTTTTATA
1 TTTTTATA
88091663 CTTTTTAAATA
1 -TTTTT--ATA
* *
88091674 ATTCTAT-
1 TTTTTATA
88091681 TTTTTAATA
1 TTTTT-ATA
88091690 TTTTTATA
1 TTTTTATA
88091698 TTTTT
1 TTTTT
88091703 TTGAATTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
7 3 0.08
8 20 0.51
9 10 0.26
10 3 0.08
11 3 0.08
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.70
Consensus pattern (8 bp):
TTTTTATA
Found at i:88091667 original size:17 final size:16
Alignment explanation
Indices: 88091647--88091702 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 16
88091637 TAAATTAAAT
88091647 TTTTTATATTTTTATA
1 TTTTTATATTTTTATA
* *
88091663 CTTTTTAAATAATTCTAT-
1 -TTTTT--ATATTTTTATA
88091681 TTTTTAATATTTTTATA
1 TTTTT-ATATTTTTATA
88091698 TTTTT
1 TTTTT
88091703 TTGAATTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 9 0.28
17 15 0.47
19 8 0.25
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTTATATTTTTATA
Found at i:88091718 original size:35 final size:34
Alignment explanation
Indices: 88091644--88091720 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 34
88091634 TTTTAAATTA
88091644 AATTTTTTATATTTTTATACTTTTTAAATAATTCT
1 AATTTTTTATATTTTTATACTTTTTAAAT-ATTCT
* * *
88091679 -ATTTTTTAATATTTTTATATTTTTTTGAAT-TTTT
1 AATTTTTT-ATATTTTTATA-CTTTTTAAATATTCT
88091713 AATTTTTT
1 AATTTTTT
88091721 TTAAAAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
34 10 0.28
35 18 0.50
36 8 0.22
ACGTcount: A:0.27, C:0.03, G:0.01, T:0.69
Consensus pattern (34 bp):
AATTTTTTATATTTTTATACTTTTTAAATATTCT
Found at i:88091721 original size:18 final size:19
Alignment explanation
Indices: 88091680--88091724 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
88091670 AATAATTCTA
*
88091680 TTTTTTAATATTTTTATAT
1 TTTTTTAATATTTTAATAT
88091699 TTTTTTGAAT-TTTTAAT-T
1 TTTTTT-AATATTTTAATAT
88091717 TTTTTTAA
1 TTTTTTAA
88091725 AAATTAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 2 0.08
18 7 0.29
19 12 0.50
20 3 0.12
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTTTAATATTTTAATAT
Found at i:88093784 original size:3 final size:3
Alignment explanation
Indices: 88093776--88093804 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
88093766 TCTTAATTAA
88093776 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
88093805 ACATCTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:88094393 original size:29 final size:29
Alignment explanation
Indices: 88094351--88094410 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
88094341 GACACCTCAC
88094351 CACGCCATCCATCCAATCCCAACATTAAT
1 CACGCCATCCATCCAATCCCAACATTAAT
88094380 CACGCCATCCATCCAATCCCAACATTAAT
1 CACGCCATCCATCCAATCCCAACATTAAT
88094409 CA
1 CA
88094411 GCAGCCTCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.42, G:0.03, T:0.20
Consensus pattern (29 bp):
CACGCCATCCATCCAATCCCAACATTAAT
Found at i:88106865 original size:47 final size:47
Alignment explanation
Indices: 88106796--88106891 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
88106786 AATACACCCA
88106796 TTAGAGATTAGAACTCATAACACATTTAGAGAATTTTGTGTTTTACG
1 TTAGAGATTAGAACTCATAACACATTTAGAGAATTTTGTGTTTTACG
88106843 TTAGAGATTAGAACTCATAACACATTTAGAGAATTTTGTGTTTTACG
1 TTAGAGATTAGAACTCATAACACATTTAGAGAATTTTGTGTTTTACG
88106890 TT
1 TT
88106892 TTGAGGGTTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (47 bp):
TTAGAGATTAGAACTCATAACACATTTAGAGAATTTTGTGTTTTACG
Found at i:88116592 original size:16 final size:17
Alignment explanation
Indices: 88116568--88116600 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
88116558 TTATTAAAAT
88116568 TTTATAATATTAATTAA
1 TTTATAATATTAATTAA
*
88116585 TTTA-AATATTATTTAA
1 TTTATAATATTAATTAA
88116601 ATGTATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTATAATATTAATTAA
Found at i:88117868 original size:27 final size:28
Alignment explanation
Indices: 88117815--88117874 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 28
88117805 TAATTTTATT
** *
88117815 TTTTTATTAAATTACCCTAAAATGCTGA
1 TTTTTATTAAATTACCAGAAAAGGCTGA
*
88117843 TTTTT-TTAAATTACCAGAATAGGCTGA
1 TTTTTATTAAATTACCAGAAAAGGCTGA
88117870 TTTTT
1 TTTTT
88117875 GGAATATTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
27 23 0.82
28 5 0.18
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.47
Consensus pattern (28 bp):
TTTTTATTAAATTACCAGAAAAGGCTGA
Found at i:88118572 original size:73 final size:73
Alignment explanation
Indices: 88118453--88118590 Score: 249
Period size: 73 Copynumber: 1.9 Consensus size: 73
88118443 ACTCGTAACT
* *
88118453 GTGTTGGTGGAGAGGTGGAGAATGGGATGCACACATTCTACCTTCCATGCGGTGAGTGTACTATC
1 GTGTTGGTGGAGAGGTGGAGAATGAGACGCACACATTCTACCTTCCATGCGGTGAGTGTACTATC
88118518 TCATAAGC
66 TCATAAGC
*
88118526 GTGTTGGTGGAGAGGTGGAGAATGAGACGCACACATTCTATCTTCCATGCGGTGAGTGTACTATC
1 GTGTTGGTGGAGAGGTGGAGAATGAGACGCACACATTCTACCTTCCATGCGGTGAGTGTACTATC
88118591 ACTCTGGATG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
73 62 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (73 bp):
GTGTTGGTGGAGAGGTGGAGAATGAGACGCACACATTCTACCTTCCATGCGGTGAGTGTACTATC
TCATAAGC
Found at i:88120647 original size:22 final size:23
Alignment explanation
Indices: 88120622--88120667 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
88120612 CAACCAAACC
88120622 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
88120644 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
88120667 A
1 A
88120668 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:88120673 original size:23 final size:23
Alignment explanation
Indices: 88120629--88120673 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
88120619 ACCAATTCAA
*
88120629 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
88120652 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
88120674 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:88124105 original size:3 final size:3
Alignment explanation
Indices: 88124097--88124125 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
88124087 GAATCATAGA
88124097 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
88124126 ATCATCTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:88130789 original size:24 final size:24
Alignment explanation
Indices: 88130762--88130809 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 24
88130752 TTTTATATTA
88130762 AAAT-ATATTATTTTTTTATTTTTT
1 AAATAATATTA-TTTTTTATTTTTT
88130786 AAATAAGATATTATTTTTTATTTT
1 AAAT-A-ATATTATTTTTTATTTT
88130810 CGGATCAGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 4 0.19
26 11 0.52
27 6 0.29
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (24 bp):
AAATAATATTATTTTTTATTTTTT
Found at i:88130879 original size:27 final size:27
Alignment explanation
Indices: 88130849--88130911 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
88130839 AATACGTTGC
* *
88130849 GCCTATCTCTGAGGCACGACTAGTCGA
1 GCCTATCTCAGAGGCACGACTAATCGA
* * * * *
88130876 GCCTTTCTCAGATGCGCGACTAATTGT
1 GCCTATCTCAGAGGCACGACTAATCGA
88130903 GCCTATCTC
1 GCCTATCTC
88130912 GGAGCCGCAA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.19, C:0.30, G:0.22, T:0.29
Consensus pattern (27 bp):
GCCTATCTCAGAGGCACGACTAATCGA
Found at i:88131313 original size:19 final size:20
Alignment explanation
Indices: 88131289--88131334 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
88131279 CATCCCAACA
*
88131289 CCAGAAAAGTAAATTA-TTT
1 CCAGAAAAGTAAATCATTTT
88131308 CCAGAAAAGTAAATCATTTT
1 CCAGAAAAGTAAATCATTTT
88131328 CCAGAAA
1 CCAGAAA
88131335 TTTTTTTTCG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 15 0.60
20 10 0.40
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.26
Consensus pattern (20 bp):
CCAGAAAAGTAAATCATTTT
Found at i:88131518 original size:60 final size:60
Alignment explanation
Indices: 88131425--88131543 Score: 175
Period size: 60 Copynumber: 2.0 Consensus size: 60
88131415 ATACTAAACT
* * * * *
88131425 AAACGCAACAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTAATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
* *
88131485 AAACACAAAAATTAATAACATAATTCTAAATTACTAACAAATTAATTTTAAAATTATTA
1 AAACACAAAAATTAATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
88131544 TAAAAAAACA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
60 52 1.00
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTAATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:88133480 original size:21 final size:20
Alignment explanation
Indices: 88133456--88133494 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
88133446 ATCTCACTCG
* *
88133456 ATTTGACTCGACTCGAATTTT
1 ATTTCACTCAACTC-AATTTT
88133477 ATTTCACTCAACTCAATT
1 ATTTCACTCAACTCAATT
88133495 CGAAAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (20 bp):
ATTTCACTCAACTCAATTTT
Found at i:88136218 original size:21 final size:21
Alignment explanation
Indices: 88136194--88136233 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
88136184 AAGGTTGAAA
*
88136194 CTAGCCTTGATGGGTTAGATG
1 CTAGCCTTAATGGGTTAGATG
**
88136215 CTAGGGTTAATGGGTTAGA
1 CTAGCCTTAATGGGTTAGA
88136234 GTCTGGGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.23, C:0.10, G:0.35, T:0.33
Consensus pattern (21 bp):
CTAGCCTTAATGGGTTAGATG
Found at i:88144981 original size:18 final size:17
Alignment explanation
Indices: 88144958--88144991 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
88144948 AGTAAGGTGG
88144958 GAAAAAAATTAGAAAGAT
1 GAAAAAAA-TAGAAAGAT
88144976 GAAAAAAATAGAAAGA
1 GAAAAAAATAGAAAGA
88144992 AAGATGCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (17 bp):
GAAAAAAATAGAAAGAT
Found at i:88146893 original size:19 final size:19
Alignment explanation
Indices: 88146869--88146906 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
88146859 AAGTCAATAA
88146869 CAAATTTGATTACGGTGGG
1 CAAATTTGATTACGGTGGG
*
88146888 CAAATTTGATTACGTTGGG
1 CAAATTTGATTACGGTGGG
88146907 TGACAGTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.11, G:0.29, T:0.34
Consensus pattern (19 bp):
CAAATTTGATTACGGTGGG
Found at i:88151763 original size:2 final size:2
Alignment explanation
Indices: 88151750--88151779 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
88151740 AATTAAAATT
*
88151750 AG AG AG AA AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
88151780 GTGGAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:88159493 original size:17 final size:17
Alignment explanation
Indices: 88159468--88159504 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
88159458 ACCACACGAC
*
88159468 TGTGCCACATGCCCATG
1 TGTGCCACATGACCATG
*
88159485 TGTGGCACATGACCATG
1 TGTGCCACATGACCATG
88159502 TGT
1 TGT
88159505 CAAACAGTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.19, C:0.27, G:0.27, T:0.27
Consensus pattern (17 bp):
TGTGCCACATGACCATG
Found at i:88160984 original size:16 final size:16
Alignment explanation
Indices: 88160963--88160993 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88160953 TCATTATTAT
*
88160963 GTCTTTTGTATTTTAG
1 GTCTTTTATATTTTAG
88160979 GTCTTTTATATTTTA
1 GTCTTTTATATTTTA
88160994 CATGCATAGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.13, T:0.65
Consensus pattern (16 bp):
GTCTTTTATATTTTAG
Found at i:88164277 original size:20 final size:20
Alignment explanation
Indices: 88164189--88164277 Score: 83
Period size: 20 Copynumber: 4.5 Consensus size: 20
88164179 GAGACACCGT
88164189 AGTGCAAAC-GTAGGCA-CAA
1 AGTGCAAACAG-AGGCACCAA
* * **
88164208 TTGTGCAATCAGAGGCTTCAA
1 -AGTGCAAACAGAGGCACCAA
* *
88164229 AGTGCAAATAGAGACACCAA
1 AGTGCAAACAGAGGCACCAA
*
88164249 AGTGTAAACAGAGGCACCAA
1 AGTGCAAACAGAGGCACCAA
88164269 AGTGCAAAC
1 AGTGCAAAC
88164278 CCGTACAAGC
Statistics
Matches: 54, Mismatches: 13, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
20 50 0.93
21 4 0.07
ACGTcount: A:0.42, C:0.20, G:0.24, T:0.15
Consensus pattern (20 bp):
AGTGCAAACAGAGGCACCAA
Found at i:88164761 original size:12 final size:12
Alignment explanation
Indices: 88164744--88164770 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
88164734 ATCTCATTTG
88164744 TATTTCCATGCA
1 TATTTCCATGCA
88164756 TATTTCCATGCA
1 TATTTCCATGCA
88164768 TAT
1 TAT
88164771 GACCCATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (12 bp):
TATTTCCATGCA
Found at i:88166248 original size:39 final size:39
Alignment explanation
Indices: 88166194--88166270 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
88166184 TATTAACTTC
88166194 AACAAATACAAGCTCCTGGTTTCATCAAAGTCAAAAGAA
1 AACAAATACAAGCTCCTGGTTTCATCAAAGTCAAAAGAA
88166233 AACAAATACAAGCTCCTGGTTTCATCAAAGTCAAAAGA
1 AACAAATACAAGCTCCTGGTTTCATCAAAGTCAAAAGA
88166271 GAAGATCATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.45, C:0.21, G:0.13, T:0.21
Consensus pattern (39 bp):
AACAAATACAAGCTCCTGGTTTCATCAAAGTCAAAAGAA
Found at i:88167701 original size:19 final size:19
Alignment explanation
Indices: 88167673--88167721 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
88167663 ATAAGAAAGA
*
88167673 AATAATACTAATA-TCAAAT
1 AATAAAACTAATACT-AAAT
*
88167692 AATAAAACTATTACTAAAT
1 AATAAAACTAATACTAAAT
88167711 -ATAAAA-TAATA
1 AATAAAACTAATA
88167722 ATATAATGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 4 0.15
18 6 0.23
19 15 0.58
20 1 0.04
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (19 bp):
AATAAAACTAATACTAAAT
Found at i:88169906 original size:30 final size:30
Alignment explanation
Indices: 88169861--88169934 Score: 85
Period size: 30 Copynumber: 2.5 Consensus size: 30
88169851 AAATTTTAAA
* ** **
88169861 TTAATAATTATAAAATTGTGCTTTAATTTT
1 TTAAAAATTATAAAATTGTAATTTAATCGT
* *
88169891 TTAAAAATAATAAAATTTTAATTTAATCGT
1 TTAAAAATTATAAAATTGTAATTTAATCGT
88169921 TTAAAAATTATAAA
1 TTAAAAATTATAAA
88169935 TATATAAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.47, C:0.03, G:0.04, T:0.46
Consensus pattern (30 bp):
TTAAAAATTATAAAATTGTAATTTAATCGT
Found at i:88171310 original size:16 final size:18
Alignment explanation
Indices: 88171277--88171310 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
88171267 TATTAATAGG
88171277 GTGAATTTTGTGTTAATT
1 GTGAATTTTGTGTTAATT
88171295 GTGAA-TTTGT-TTAATT
1 GTGAATTTTGTGTTAATT
88171311 TTACATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 5 0.31
18 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (18 bp):
GTGAATTTTGTGTTAATT
Found at i:88179539 original size:57 final size:57
Alignment explanation
Indices: 88179434--88179542 Score: 139
Period size: 57 Copynumber: 1.9 Consensus size: 57
88179424 CCCAAATCTG
* * * **
88179434 TTTTTTTTTGTCAACCAACTATGAAAAGTTACAAAATGGTCATTCAACTATTAGTAA
1 TTTTTTTTAGTCAACCAACTACGAAAAGTTACAAAATAGTCACCCAACTATTAGTAA
**
88179491 TTTTTTTTAGTC-ACTCAACTACGAAAAGTTACAAAATAGTTGCCCAACTATT
1 TTTTTTTTAGTCAAC-CAACTACGAAAAGTTACAAAATAGTCACCCAACTATT
88179543 CAATTTTGTC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
56 2 0.05
57 42 0.95
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.38
Consensus pattern (57 bp):
TTTTTTTTAGTCAACCAACTACGAAAAGTTACAAAATAGTCACCCAACTATTAGTAA
Found at i:88179738 original size:19 final size:19
Alignment explanation
Indices: 88179703--88179739 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
88179693 ACCAATCTGA
**
88179703 TTAAAAAATTATTAAAAAT
1 TTAAAAAATTAAAAAAAAT
88179722 TTAAAAAATTAAAAAAAA
1 TTAAAAAATTAAAAAAAA
88179740 ACTTCGGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TTAAAAAATTAAAAAAAAT
Found at i:88180952 original size:31 final size:32
Alignment explanation
Indices: 88180874--88180952 Score: 74
Period size: 31 Copynumber: 2.5 Consensus size: 32
88180864 ATGGTAAGGG
* * *
88180874 TTAATTTTAATTTTTTTTAATATTATTTAATAT
1 TTAATTAT-ATTTTTTGTAATATTAATTAATAT
*
88180907 TT--TTATTTCATTTTTGTAAT-TTAATTAATAT
1 TTAATTATAT--TTTTTGTAATATTAATTAATAT
88180938 TTAATTATATTTTTT
1 TTAATTATATTTTTT
88180953 ATAACAGTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
30 1 0.03
31 20 0.54
32 9 0.24
33 7 0.19
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.67
Consensus pattern (32 bp):
TTAATTATATTTTTTGTAATATTAATTAATAT
Found at i:88182948 original size:59 final size:59
Alignment explanation
Indices: 88182861--88183086 Score: 278
Period size: 59 Copynumber: 3.8 Consensus size: 59
88182851 ATTTATTTGT
* * * * * * *
88182861 TTTTTAATATATTTGTACAAATTATTTTTATATTTTTTCGTTTAATAAAAGAG-ATTTT
1 TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTC
* *
88182919 TTTTAAAATATTTTTGTACAAATTATTTTTATGTTGTTTCATTTAATAAAACAGAAGTTC
1 TTTT-GAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTC
* * *
88182979 TTTTGAATATTTTTGTA-AAACTTATATTTGTATTGTTTCATTTAATAAAACAGAAGGTC
1 TTTTGAATATTTTTGTACAAA-TTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTC
* *
88183038 TTTTGAATATTTTTGTACAAATTATTTTT-TCATTATTTTATTTAATAAA
1 TTTTGAATATTTTTGTACAAATTATTTTTAT-ATTGTTTCATTTAATAAA
88183087 TTAGGAGTTA
Statistics
Matches: 147, Mismatches: 16, Indels: 9
0.85 0.09 0.05
Matches are distributed among these distances:
58 8 0.05
59 129 0.88
60 10 0.07
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (59 bp):
TTTTGAATATTTTTGTACAAATTATTTTTATATTGTTTCATTTAATAAAACAGAAGTTC
Found at i:88188428 original size:4 final size:4
Alignment explanation
Indices: 88188414--88188452 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
88188404 GATTATTATA
* *
88188414 TATG AATG TATG TATG TATG TATG TATG TATG GATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
88188453 ATTTGAAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (4 bp):
TATG
Found at i:88189838 original size:22 final size:22
Alignment explanation
Indices: 88189813--88189856 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
88189803 TATACTAAAA
88189813 GTAAAAGAAAATTTAAGCATAT
1 GTAAAAGAAAATTTAAGCATAT
88189835 GTAAAAGAAAATTTAAGCATAT
1 GTAAAAGAAAATTTAAGCATAT
88189857 TCTAACTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (22 bp):
GTAAAAGAAAATTTAAGCATAT
Found at i:88197018 original size:26 final size:26
Alignment explanation
Indices: 88196988--88197057 Score: 86
Period size: 29 Copynumber: 2.5 Consensus size: 26
88196978 ATACATATTT
*
88196988 AATTATTTATATTTAGTAATATAATA
1 AATTATTTATATTTAGTAAAATAATA
*
88197014 AATTATTCATATAATTTATTAAAATAATA
1 AATTATT--TAT-ATTTAGTAAAATAATA
88197043 AATTATTTAATATTT
1 AATTATTT-ATATTT
88197058 TAATTTTATT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
26 7 0.18
27 5 0.13
28 5 0.13
29 21 0.55
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (26 bp):
AATTATTTATATTTAGTAAAATAATA
Found at i:88197027 original size:16 final size:16
Alignment explanation
Indices: 88197004--88197055 Score: 56
Period size: 13 Copynumber: 3.4 Consensus size: 16
88196994 TTATATTTAG
88197004 TAATATAATAAATTAT
1 TAATATAATAAATTAT
*
88197020 TCATATAAT---TTAT
1 TAATATAATAAATTAT
*
88197033 TAAAATAATAAATTATT
1 TAATATAATAAATTA-T
88197050 TAATAT
1 TAATAT
88197056 TTTAATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
13 11 0.39
16 11 0.39
17 6 0.21
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TAATATAATAAATTAT
Found at i:88197081 original size:13 final size:13
Alignment explanation
Indices: 88197064--88197106 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
88197054 ATTTTAATTT
88197064 TATTTTAATAATAA
1 TATTTTAA-AATAA
88197078 -ATTTTAAAATAA
1 TATTTTAAAATAA
*
88197090 TAATTTAAAATAA
1 TATTTTAAAATAA
88197103 TATT
1 TATT
88197107 CTTCACATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
12 5 0.19
13 21 0.81
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTTTAAAATAA
Found at i:88214129 original size:29 final size:29
Alignment explanation
Indices: 88214095--88214152 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
88214085 GACAGTTTTG
* *
88214095 TTCACTATTTTCATTTTTTTTTTTTAGAA
1 TTCACTATCTTCATTATTTTTTTTTAGAA
*
88214124 TTCACTGTCTTCATTATTTTTTTTTAGAA
1 TTCACTATCTTCATTATTTTTTTTTAGAA
88214153 AATGGAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.62
Consensus pattern (29 bp):
TTCACTATCTTCATTATTTTTTTTTAGAA
Found at i:88214913 original size:18 final size:18
Alignment explanation
Indices: 88214882--88214916 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
88214872 GAAACAATCC
*
88214882 ATTATATTATAATTTTAT
1 ATTATATTAAAATTTTAT
*
88214900 ATTATTTTAAAATTTTA
1 ATTATATTAAAATTTTA
88214917 GTCCCTAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTATATTAAAATTTTAT
Found at i:88217193 original size:11 final size:11
Alignment explanation
Indices: 88217170--88217202 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
88217160 AAAATTAAAT
88217170 ATAATA-ATAA
1 ATAATATATAA
*
88217180 ATAATATTTAA
1 ATAATATATAA
88217191 ATAATATATAA
1 ATAATATATAA
88217202 A
1 A
88217203 ATATAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
10 6 0.30
11 14 0.70
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATAATATATAA
Found at i:88217209 original size:18 final size:18
Alignment explanation
Indices: 88217161--88217210 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
88217151 ATATTTTAAA
*
88217161 AAATTAAATAT-AATAAT
1 AAATAAAATATAAATAAT
* *
88217178 AAATAATATTTAAATAAT
1 AAATAAAATATAAATAAT
*
88217196 ATATAAAATATAAAT
1 AAATAAAATATAAAT
88217211 TAATCTAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
17 8 0.31
18 18 0.69
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAATAAAATATAAATAAT
Found at i:88217213 original size:23 final size:21
Alignment explanation
Indices: 88217157--88217213 Score: 55
Period size: 23 Copynumber: 2.6 Consensus size: 21
88217147 TAAAATATTT
88217157 TAAA-AAATTAAATATAATAA
1 TAAATAAATTAAATATAATAA
88217177 TAAATAATATTTAAATAATATATAA
1 TAAATAA-A-TTAAAT-ATA-ATAA
88217202 -AATATAAATTAA
1 TAA-ATAAATTAA
88217214 TCTAATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
20 4 0.13
21 2 0.06
22 1 0.03
23 10 0.32
24 6 0.19
25 8 0.26
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAATAAATTAAATATAATAA
Found at i:88226592 original size:262 final size:262
Alignment explanation
Indices: 88226127--88226919 Score: 1570
Period size: 262 Copynumber: 3.0 Consensus size: 262
88226117 TTTAAGTCAA
*
88226127 AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTGGGTGAACATGGT
1 AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTAGGTGAACATGGT
88226192 GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
66 GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
88226257 CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
131 CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
88226322 TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
196 TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
88226387 AC
261 AC
88226389 AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTAGGTGAACATGGT
1 AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTAGGTGAACATGGT
88226454 GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
66 GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
88226519 CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
131 CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
88226584 TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
196 TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
88226649 AC
261 AC
88226651 AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTAGGTGAACATGGT
1 AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTAGGTGAACATGGT
88226716 GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
66 GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
88226781 CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
131 CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
88226846 TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
196 TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
88226911 AC
261 AC
88226913 AA-AATCT
1 AACAATCT
88226920 GCAATTGGAG
Statistics
Matches: 530, Mismatches: 1, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
261 5 0.01
262 525 0.99
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (262 bp):
AACAATCTTTCAATTCCAATTACAATGGGGTTTGGTGACTTGTAATTTGGTTAGGTGAACATGGT
GCGTATTGGTGTCTGTGCGAATACTAGAAACACACAAAATGATGGCTGAAATATTCAGTGGTATA
CTACAACTATATAACATGTACTAAGGATCGAGTGCTAAAAAAAACCAACATTTGGAACCAAGCAA
TTATACAAGACACTGAAAATAGGAAATAGAACATCCCAACAAGGATGAGAAAGCACAAGGGTGTT
AC
Found at i:88229028 original size:30 final size:31
Alignment explanation
Indices: 88228969--88229028 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
88228959 ATATTTATCA
* *
88228969 AATCAAAGTTTATGTATCAAATTTCATATTG
1 AATCAAAATTCATGTATCAAATTTCATATTG
*
88229000 AATCAAAATTCATGTAT-AAATTTGATATT
1 AATCAAAATTCATGTATCAAATTTCATATT
88229029 TATTCCTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.42
31 15 0.58
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (31 bp):
AATCAAAATTCATGTATCAAATTTCATATTG
Found at i:88230876 original size:24 final size:24
Alignment explanation
Indices: 88230848--88230897 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
88230838 TTTACAACAT
**
88230848 TATTTATTATTGTACCTGTAATTA
1 TATTTATTAAGGTACCTGTAATTA
* *
88230872 TATTTTTTAAGGTACTTGTAATTA
1 TATTTATTAAGGTACCTGTAATTA
88230896 TA
1 TA
88230898 CTAATAAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.06, G:0.10, T:0.54
Consensus pattern (24 bp):
TATTTATTAAGGTACCTGTAATTA
Found at i:88231793 original size:7 final size:7
Alignment explanation
Indices: 88231783--88231851 Score: 54
Period size: 7 Copynumber: 10.1 Consensus size: 7
88231773 AACCTTGAAT
88231783 CTCAAAC
1 CTCAAAC
88231790 CTCAAAC
1 CTCAAAC
*
88231797 CTCAAAA
1 CTCAAAC
*
88231804 CTTAAAC
1 CTCAAAC
*
88231811 GTCAAAC
1 CTCAAAC
88231818 C-CAAA-
1 CTCAAAC
**
88231823 CTGTGAAC
1 CT-CAAAC
88231831 C-CAAAC
1 CTCAAAC
*
88231837 CTCGAAC
1 CTCAAAC
88231844 CTCAAAC
1 CTCAAAC
88231851 C
1 C
88231852 CCAAGTTTAA
Statistics
Matches: 46, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
5 1 0.02
6 8 0.17
7 36 0.78
8 1 0.02
ACGTcount: A:0.42, C:0.38, G:0.06, T:0.14
Consensus pattern (7 bp):
CTCAAAC
Found at i:88236925 original size:13 final size:13
Alignment explanation
Indices: 88236907--88236932 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
88236897 TATGTTTACC
88236907 TGCGGTTAATATA
1 TGCGGTTAATATA
88236920 TGCGGTTAATATA
1 TGCGGTTAATATA
88236933 AAAATAGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TGCGGTTAATATA
Found at i:88239429 original size:16 final size:18
Alignment explanation
Indices: 88239402--88239437 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
88239392 TTTAATTTTC
88239402 AAAATTTCAAAAAA-AAA
1 AAAATTTCAAAAAATAAA
88239419 AAAATTT-AAAAAATAAA
1 AAAATTTCAAAAAATAAA
88239436 AA
1 AA
88239438 TTGCATTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAATTTCAAAAAATAAA
Done.