Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 28 of 295
Found at i:8424348 original size:40 final size:40
Alignment explanation
Indices: 8424293--8424662 Score: 238
Period size: 40 Copynumber: 9.4 Consensus size: 40
8424283 AATTTTTTGT
* *
8424293 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8424333 GGCGTTTTTCAAAAAGCACCTCTAATACTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * * * * *
8424373 GACATTTTTCAAAAAGCACCGCTAATACTTGATCTATAAC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * * *
8424413 GGCATTTTTCAAAAAGTGACACTAATTCTCGATCTACAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8424453 GACGTTTTTC-AAAAGCGTCACTAATGC-C-A-CTAAAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* **** * * * * * * * * *
8424489 -TC-AACAT-AAAACGACGGC-GT--TGTCCCTAATTTTTTTGT
1 GGCGTTTTTCAAAAAG-CGCCACTAATG-CTC-GA-TCTATAGC
* * * *
8424527 GGCGTTTTTCAAAAAGAGCCCCTAATGGTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8424567 GGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* *
8424607 GGCGTTTTTCAGAAAGCGTCACTAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
*
8424647 GGTGTTTTTCAAAAAG
1 GGCGTTTTTCAAAAAG
8424663 TGCCGCAAGT
Statistics
Matches: 250, Mismatches: 66, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
32 2 0.01
33 1 0.00
34 7 0.03
35 4 0.02
36 7 0.03
37 1 0.00
38 3 0.01
39 15 0.06
40 200 0.80
41 7 0.03
42 1 0.00
43 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
Found at i:8424366 original size:192 final size:193
Alignment explanation
Indices: 8424025--8424428 Score: 546
Period size: 192 Copynumber: 2.1 Consensus size: 193
8424015 AATGTTTTTT
* *
8424025 ACGGCGTTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACGACGGCGTCTTACT
1 ACGGCATTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGTCTTACT
* * * *
8424090 GAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGGTCAACTTATAGCTGCGATTTTTAGAA
66 GAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGCTCAACCTATAGCGGCGATTTTTAAAA
* * * * * *
8424155 AGCACCGCTAATGCTCGATCTATAGCGGA-GTTTTTCAAGAAGCGCTGCTAATGCTCGATC-TA
131 AGCACCGCTAATACTCGATCTATAGC-GACATTTTTCAAAAAGCACCGCTAATACTCGATCATA
* * *
8424217 GCGGCATTTTTCAAAAAGCGTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGT-TGTGC
1 ACGGCATTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGTCT-TAC
* * * * *
8424281 TTAATTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCG-TTTTTCAA
65 TGAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGCTCAACCTATAGCGGCGATTTTT-AA
* *
8424345 AAAGCACCTCTAATACTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTTGATCTAT
129 AAAGCACCGCTAATACTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTCGATC-AT
8424410 A
193 A
8424411 ACGGCATTTTTCAAAAAG
1 ACGGCATTTTTCAAAAAG
8424429 TGACACTAAT
Statistics
Matches: 184, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
191 8 0.04
192 157 0.85
194 19 0.10
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (193 bp):
ACGGCATTTTTCAAAAAGCCTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGCGTCTTACT
GAATTTTTTGCGGCATTTTTCAAAAAGCGCCGCTAACGCTCAACCTATAGCGGCGATTTTTAAAA
AGCACCGCTAATACTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTAATACTCGATCATA
Found at i:8424539 original size:194 final size:198
Alignment explanation
Indices: 8424333--8424740 Score: 484
Period size: 194 Copynumber: 2.1 Consensus size: 198
8424323 GACCTATAGC
* * *
8424333 GGCGTTTTTCAAAAAGCA-CCTCTAATACTCGATCTATAGCGACATTTTTCAAAAAGCACCGCTA
1 GGCGTTTTTCAAAAAG-AGCCCCTAATACTCGACCTATAGCGACATTTTTCAAAAAGCACCACTA
** * *
8424397 ATACTTGATCTATAACGGCATTTTTCAAAAAGTGACACTAATTCTCGATCTACAGCGACGTTTTT
65 ATACTCAATCTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTT
8424462 C-AAAA-GC-GT-CACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTT
130 CAAAAACGCAGTCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTT
8424523 TTGT
195 TTGT
** * * * *
8424527 GGCGTTTTTCAAAAAGAGCCCCTAATGGTCGACCTATAGCGGCGTTTTTCAGAAAGCGCCACTAA
1 GGCGTTTTTCAAAAAGAGCCCCTAATACTCGACCTATAGCGACATTTTTCAAAAAGCACCACTAA
* * * * * **
8424592 TACTCAATCTATAGCGGCGTTTTTCAGAAAGCGTCACTAATGCTCGATCTATAGCGGTGTTTTTC
66 TACTCAATCTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTC
* * * * *
8424657 AAAAAGTGCCGCAAGTGCCGCTAATGCCACTAATGCTCAACATAAAACGACGGTGTTGTGCTTAA
131 AAAAA----CGC-AGT-CCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAA
8424722 TTTTTTTGT
190 TTTTTTTGT
*
8424731 GGCGCTTTTC
1 GGCGTTTTTC
8424741 CGCTAATGCT
Statistics
Matches: 177, Mismatches: 26, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
193 1 0.01
194 108 0.61
195 4 0.02
200 2 0.01
202 2 0.01
204 60 0.34
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (198 bp):
GGCGTTTTTCAAAAAGAGCCCCTAATACTCGACCTATAGCGACATTTTTCAAAAAGCACCACTAA
TACTCAATCTATAACGGCATTTTTCAAAAAGCGACACTAATGCTCGATCTACAGCGACGTTTTTC
AAAAACGCAGTCCACTAATGCCACTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTT
TGT
Found at i:8424576 original size:234 final size:231
Alignment explanation
Indices: 8424145--8424665 Score: 715
Period size: 234 Copynumber: 2.2 Consensus size: 231
8424135 TATAGCTGCG
* * *
8424145 ATTTTT-AGAAAGCACCGCTAATGCTCGATCTATAGCGGAGTTTTTCAAGAAGCGCTGCTAATGC
1 ATTTTTCAGAAAGCACCGCTAATGCTCGATCTATAGCGGA-TTTTTCAAAAAGTGCTACTAATGC
* *
8424209 TCGATCTAGCGGCATTTTTCAAAAAGCGTCGCTAATGCCACTAAAGCTCAACATAAAACAACGGC
65 TCGATCTAGCGACATTTTTCAAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACAACGGC
* * * *
8424274 GTTGTGCTTAATTTTTTGTGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGCGTT
130 GTTGTCCCTAATTTTTTGTGGCGTTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGGCGTT
* *
8424339 TTTCAAAAAGCACCTCTAATACTCGATCTATAGCGAC
195 TTTCAAAAAGCACCACTAATACTCAATCTATAGCGAC
* * * * *
8424376 ATTTTTCAAAAAGCACCGCTAATACTTGATCTATAACGGCATTTTTCAAAAAGTGAC-ACTAATT
1 ATTTTTCAGAAAGCACCGCTAATGCTCGATCTATAGCGG-ATTTTTCAAAAAGTG-CTACTAATG
* *
8424440 CTCGATCTACAGCGACGTTTTTC-AAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACGAC
64 CTCGATCT--AGCGACATTTTTCAAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACAAC
*
8424504 GGCGTTGTCCCTAATTTTTTTGTGGCGTTTTTCAAAAAGAGCCCCTAATGGTCGACCTATAGCGG
127 GGCGTTGTCCCTAA-TTTTTTGTGGCGTTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGG
* * *
8424569 CGTTTTTCAGAAAGCGCCACTAATACTCAATCTATAGCGGC
191 CGTTTTTCAAAAAGCACCACTAATACTCAATCTATAGCGAC
* ** * *
8424610 GTTTTTCAGAAAGCGTCACTAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTGC
1 ATTTTTCAGAAAGCACCGCTAATGCTCGATCTATAGCGG-ATTTTTCAAAAAGTGC
8424666 CGCAAGTGCC
Statistics
Matches: 252, Mismatches: 32, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
231 6 0.02
232 53 0.21
233 54 0.21
234 139 0.55
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (231 bp):
ATTTTTCAGAAAGCACCGCTAATGCTCGATCTATAGCGGATTTTTCAAAAAGTGCTACTAATGCT
CGATCTAGCGACATTTTTCAAAAAGCGTCACTAATGCCACTAAAGCTCAACATAAAACAACGGCG
TTGTCCCTAATTTTTTGTGGCGTTTTTCAAAAAGAGCCCCTAATGCTCGACCTATAGCGGCGTTT
TTCAAAAAGCACCACTAATACTCAATCTATAGCGAC
Found at i:8424880 original size:40 final size:40
Alignment explanation
Indices: 8424836--8425353 Score: 235
Period size: 40 Copynumber: 13.2 Consensus size: 40
8424826 AATTTTTTGT
* * *
8424836 GGCGTTTTTCAAAAAGCGCCATTAATGCTTGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * *
8424876 GGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8424916 TGCATTTTTCAAAAAGTGCCACTAATGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* *
8424956 GGCGTTTTTCAAAAAGCGCCACCAATGC-C-A-CTAAAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* **** * ** ** * * * *
8424993 -TC-AAAAT--AAAA-CGACGACGTTGTGCTTAATTTTTTTGT
1 GGCGTTTTTCAAAAAGCG-CCAC-TAATGCTCGA-TCTATAGC
* * * *
8425031 GGCGTTTTTCAAAAAGTGCCCCTAATAG-TCGACCTATAAC
1 GGCGTTTTTCAAAAAGCGCCACTAAT-GCTCGATCTATAGC
* * *
8425071 GGCGTTTTTCAGAAAGCGCCGCTAGTGCTCGATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * * *
8425111 TGCGTTTTTCAAAAAGCGTCGCTAATGC-C-A-CTAAAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* ** * * ** ** * * * *
8425148 -TC-AATAT--AAAA-CGACGACGTTGTGCTTAATTTTTTTGT
1 GGCGTTTTTCAAAAAGCG-CCAC-TAATGCTCGA-TCTATAGC
* * * * *
8425186 GGCATTTTTCAAAAAGCACCGCTAATGGTCGACCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
** * * *
8425226 GGCGTTTTTCAAAAAATGCCGCTAGTGCTCAATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
** * *
8425266 GGCGTTTTTCAAAAAGCGCCGTTAGTGCTCAATCTATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
* * *
8425306 GGCGTTTTTCAAAAAGCG-CGCTAATGCTCAATATATAGC
1 GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
*
8425345 TGCGTTTTT
1 GGCGTTTTT
8425354 TCCCCAAATG
Statistics
Matches: 346, Mismatches: 108, Indels: 49
0.69 0.21 0.10
Matches are distributed among these distances:
32 4 0.01
33 12 0.03
34 7 0.02
35 3 0.01
36 4 0.01
37 12 0.03
38 6 0.02
39 31 0.09
40 243 0.70
41 9 0.03
42 13 0.04
43 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGC
Found at i:8425081 original size:309 final size:313
Alignment explanation
Indices: 8424417--8425098 Score: 827
Period size: 309 Copynumber: 2.2 Consensus size: 313
8424407 TATAACGGCA
* * * * * * *
8424417 TTTTTCAAAAAGTGACACTAATTCTCGATCTACAGCGACGTTTTTCAAAAGCGTCACTAATGCCA
1 TTTTTCAAAAAGTGCCACTAA-TGTCGATCTATAGCGGCGTTTTTCAAAAGCGCCGCTAGTGCCA
*
8424482 CTAAAGCTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCGTTTTTCAAAAAGAGCC
65 CTAAAACTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCGTTTTTCAAAAAGAGCC
* * * *
8424547 CCTAATGGTCGACCTATAGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTATAGCGGCGT
130 ACTAATGCTCGACCTATAGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTAAAGCGGCAT
* * *
8424612 TTTTCAGAAAGCGTCACTAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTGCCGCAAGTGCCG
195 TTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAG-GCCGCAA--G-CG
* * **
8424677 CTAATGCCACTAATGCTCAACATAAAACGACGGTGTTGTGCTTAATTTTTTTGTGGCG
256 CTAATGCCACTAAAGCTCAAAATAAAACGACGACGTTGTGCTTAATTTTTTTGTGGCG
* * * *
8424735 -CTTT-------T-CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAATGCACCGCTAGTGCC
1 TTTTTCAAAAAGTGCCACTAATG-TCGATCTATAGCGGCGTTTTTCAAAA-GCGCCGCTAGTGCC
* * * *
8424791 ACTAAAACTCAACATAAAACGACGGTGTTGTGCTTAA-TTTTTTGTGGCGTTTTTCAAAAAGCGC
64 ACTAAAACTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCGTTTTTCAAAAAGAGC
* * * * * * *
8424855 CATTAATGCTTGACCTATAGCGGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGCTGCA
129 CACTAATGCTCGACCTATAGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTAAAGCGGCA
* *
8424920 TTTTTCAAAAAGTGCCACTAATGCTCGATCTATAGCGGCGTTTTTCAAAAA-G-CGCCA-C-C-A
194 TTTTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGGCCGCAAGCGCTA
8424980 ATGCCACTAAAGCTCAAAATAAAACGACGACGTTGTGCTTAATTTTTTTGTGGCG
259 ATGCCACTAAAGCTCAAAATAAAACGACGACGTTGTGCTTAATTTTTTTGTGGCG
* * *
8425035 TTTTTCAAAAAGTGCCCCTAATAGTCGACCTATAACGGCGTTTTTCAGAAAGCGCCGCTAGTGC
1 TTTTTCAAAAAGTGCCACTAAT-GTCGATCTATAGCGGCGTTTTTCA-AAAGCGCCGCTAGTGC
8425099 TCGATCTATA
Statistics
Matches: 309, Mismatches: 42, Indels: 35
0.80 0.11 0.09
Matches are distributed among these distances:
300 52 0.17
301 4 0.01
302 1 0.00
306 4 0.01
307 1 0.00
308 2 0.01
309 194 0.63
310 48 0.16
317 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (313 bp):
TTTTTCAAAAAGTGCCACTAATGTCGATCTATAGCGGCGTTTTTCAAAAGCGCCGCTAGTGCCAC
TAAAACTCAACATAAAACGACGGCGTTGTCCCTAATTTTTTTGTGGCGTTTTTCAAAAAGAGCCA
CTAATGCTCGACCTATAGCGGCGTTTTTCAGAAAGCGCCACTAATACTCAATCTAAAGCGGCATT
TTTCAAAAAGCGCCACTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGGCCGCAAGCGCTAAT
GCCACTAAAGCTCAAAATAAAACGACGACGTTGTGCTTAATTTTTTTGTGGCG
Found at i:8425138 original size:195 final size:194
Alignment explanation
Indices: 8424740--8425138 Score: 575
Period size: 195 Copynumber: 2.1 Consensus size: 194
8424730 TGGCGCTTTT
* * * * *
8424740 CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAATGCACCGCTAGTGCCACTAAAACTCAACA
1 CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCACCAATGCCACTAAAACTCAAAA
** * *
8424805 TAAAACGACGGTGTTGTGCTTAATTTTTTGTGGCGTTTTTCAAAAAGCGCCATTAATGCTTGACC
66 TAAAACGACGACGTTGTGCTTAATTTTTTGTGGCGTTTTTCAAAAAGCGCCACTAATGCTCGACC
* * *
8424870 TATAGCGGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGTG
131 TATAACGGCGTTTTTCAGAAAGCGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGCG
* * * *
8424934 CCACTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAA
1 CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCACCAATGCCACTAAAACTCAAAA
* *
8424999 TAAAACGACGACGTTGTGCTTAATTTTTTTGTGGCGTTTTTCAAAAAGTGCCCCTAATAG-TCGA
66 TAAAACGACGACGTTGTGCTTAA-TTTTTTGTGGCGTTTTTCAAAAAGCGCCACTAAT-GCTCGA
* * *
8425063 CCTATAACGGCGTTTTTCAGAAAGCGCCGCTAGTGCTCGATCTATAGCTGCGTTTTTCAAAAAGC
129 CCTATAACGGCGTTTTTCAGAAAGCGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGC
8425128 G
194 G
*
8425129 TCGCTAATGC
1 CCGCTAATGC
8425139 CACTAAAGCT
Statistics
Matches: 180, Mismatches: 23, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
194 77 0.43
195 102 0.57
196 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (194 bp):
CCGCTAATGCTCGATCTATAGCGGCATTTTTCAAAAAGCACCACCAATGCCACTAAAACTCAAAA
TAAAACGACGACGTTGTGCTTAATTTTTTGTGGCGTTTTTCAAAAAGCGCCACTAATGCTCGACC
TATAACGGCGTTTTTCAGAAAGCGCCGCTAATGCTCGATCTAAAGCTGCATTTTTCAAAAAGCG
Found at i:8425158 original size:155 final size:154
Alignment explanation
Indices: 8424876--8425285 Score: 597
Period size: 155 Copynumber: 2.6 Consensus size: 154
8424866 GACCTATAGC
* * * * *
8424876 GGCGTTTTTCAGAAAGTGCCGCTAATGCTCGATCTA-AAGCTGCATTTTTCAAAAAGTGCCACTA
1 GGCGTTTTTCAAAAAGTGCCGCTAATG-TCGACCTATAA-CGGCGTTTTTCAAAAAGTGCCGCTA
*
8424940 ATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAAAC
64 GTGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAAAC
8425005 GACGACGTTGTGCTTAATTTTTTTGT
129 GACGACGTTGTGCTTAATTTTTTTGT
* * *
8425031 GGCGTTTTTCAAAAAGTGCCCCTAATAGTCGACCTATAACGGCGTTTTTCAGAAAGCGCCGCTAG
1 GGCGTTTTTCAAAAAGTGCCGCTAAT-GTCGACCTATAACGGCGTTTTTCAAAAAGTGCCGCTAG
* * * * *
8425096 TGCTCGATCTATAGCTGCGTTTTTCAAAAAGCGTCGCTAATGCCACTAAAGCTCAATATAAAACG
65 TGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAAACG
8425161 ACGACGTTGTGCTTAATTTTTTTGT
130 ACGACGTTGTGCTTAATTTTTTTGT
* ** * *
8425186 GGCATTTTTCAAAAAGCACCGCTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAATGCCGCTAG
1 GGCGTTTTTCAAAAAGTGCCGCTAAT-GTCGACCTATAACGGCGTTTTTCAAAAAGTGCCGCTAG
*
8425251 TGCTCAATCTATAGCGGCGTTTTTCAAAAAGCGCC
65 TGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCC
8425286 GTTAGTGCTC
Statistics
Matches: 227, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
155 224 0.99
156 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (154 bp):
GGCGTTTTTCAAAAAGTGCCGCTAATGTCGACCTATAACGGCGTTTTTCAAAAAGTGCCGCTAGT
GCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCACCAATGCCACTAAAGCTCAAAATAAAACGA
CGACGTTGTGCTTAATTTTTTTGT
Found at i:8430339 original size:16 final size:16
Alignment explanation
Indices: 8430306--8430339 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8430296 CCGCCGTGTT
* *
8430306 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
8430322 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
8430338 AA
1 AA
8430340 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:8433116 original size:21 final size:21
Alignment explanation
Indices: 8433090--8433130 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8433080 AGACGAGCAA
* *
8433090 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
8433111 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
8433131 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:8435069 original size:16 final size:16
Alignment explanation
Indices: 8435036--8435069 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8435026 GGAGATTGTT
* *
8435036 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
8435052 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
8435068 AA
1 AA
8435070 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:8439549 original size:14 final size:14
Alignment explanation
Indices: 8439530--8439560 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8439520 TGCTACCATT
8439530 TTACTATTATATTG
1 TTACTATTATATTG
*
8439544 TTACTATTTTATTG
1 TTACTATTATATTG
8439558 TTA
1 TTA
8439561 TCGTTTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.61
Consensus pattern (14 bp):
TTACTATTATATTG
Found at i:8439628 original size:30 final size:31
Alignment explanation
Indices: 8439594--8439653 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
8439584 TATTTTATTG
8439594 TTAAA-TTTGTTATTATTTTAAAGACATTTT
1 TTAAATTTTGTTATTATTTTAAAGACATTTT
* *
8439624 TTAAATTTTTTTATTATTTTAGAGACATTT
1 TTAAATTTTGTTATTATTTTAAAGACATTT
8439654 GCTTGTTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.32, C:0.03, G:0.07, T:0.58
Consensus pattern (31 bp):
TTAAATTTTGTTATTATTTTAAAGACATTTT
Found at i:8440853 original size:27 final size:27
Alignment explanation
Indices: 8440814--8440868 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
8440804 AAAGAGTTTT
*
8440814 TTATTATTATTAT-TTATTTGTTAAAAA
1 TTATAATTATTATGTT-TTTGTTAAAAA
* *
8440841 TTATAATTTTTATGTTTTTTTTAAAAA
1 TTATAATTATTATGTTTTTGTTAAAAA
8440868 T
1 T
8440869 AAGAAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (27 bp):
TTATAATTATTATGTTTTTGTTAAAAA
Found at i:8441092 original size:9 final size:9
Alignment explanation
Indices: 8441055--8441095 Score: 55
Period size: 9 Copynumber: 4.3 Consensus size: 9
8441045 TTGACAATTG
8441055 AATTTATTTT
1 AATTT-TTTT
*
8441065 TATATTTTTT
1 AAT-TTTTTT
8441075 AATTTTTTT
1 AATTTTTTT
8441084 AATTTTTTT
1 AATTTTTTT
8441093 AAT
1 AAT
8441096 AATATATTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 18 0.64
10 8 0.29
11 2 0.07
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
AATTTTTTT
Found at i:8451263 original size:25 final size:25
Alignment explanation
Indices: 8451204--8451252 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
8451194 GGATTAGACA
*
8451204 TAAAAC-TAGAATTAGACTTAAGTT
1 TAAAACTTAGGATTAGACTTAAGTT
8451228 TAAAACTTAGGATTAGACTTAAGTT
1 TAAAACTTAGGATTAGACTTAAGTT
8451253 AAGAGCTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (25 bp):
TAAAACTTAGGATTAGACTTAAGTT
Found at i:8455826 original size:20 final size:20
Alignment explanation
Indices: 8455803--8455852 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8455793 ATTGACTATT
* *
8455803 TATAAAATTTATTTTGAATA
1 TATAAAATATATTTTAAATA
*
8455823 TATAAACTATATTTTAAATA
1 TATAAAATATATTTTAAATA
*
8455843 T-TAAAGTATA
1 TATAAAATATA
8455853 ACCATTACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (20 bp):
TATAAAATATATTTTAAATA
Found at i:8473046 original size:23 final size:22
Alignment explanation
Indices: 8473012--8473054 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
8473002 ATTTTCTCTA
*
8473012 ATTTTTTAAATATTTCTATTTTT
1 ATTTTTTAAATAATT-TATTTTT
*
8473035 ATTTTTTTAATAATTTATTT
1 ATTTTTTAAATAATTTATTT
8473055 GATCGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (22 bp):
ATTTTTTAAATAATTTATTTTT
Found at i:8473347 original size:26 final size:26
Alignment explanation
Indices: 8473318--8473382 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
8473308 AGAAATAACT
8473318 GTGCTTTTGAAAATTAATTTTGAGAA
1 GTGCTTTTGAAAATTAATTTTGAGAA
* * **
8473344 GTGCTGTGGAAAATTGCTTTTGAGAA
1 GTGCTTTTGAAAATTAATTTTGAGAA
8473370 GTGCTTTTGAAAA
1 GTGCTTTTGAAAA
8473383 ATTTAAGTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (26 bp):
GTGCTTTTGAAAATTAATTTTGAGAA
Found at i:8473374 original size:13 final size:13
Alignment explanation
Indices: 8473335--8473379 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
8473325 TGAAAATTAA
8473335 TTTTGAGAAGTGC
1 TTTTGAGAAGTGC
* * * *
8473348 TGTGGAAAATTGC
1 TTTTGAGAAGTGC
8473361 TTTTGAGAAGTGC
1 TTTTGAGAAGTGC
8473374 TTTTGA
1 TTTTGA
8473380 AAAATTTAAG
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.24, C:0.07, G:0.29, T:0.40
Consensus pattern (13 bp):
TTTTGAGAAGTGC
Found at i:8479369 original size:46 final size:47
Alignment explanation
Indices: 8479232--8479450 Score: 164
Period size: 46 Copynumber: 4.7 Consensus size: 47
8479222 GAGTAAGGTA
* * * *
8479232 CCGATGACGTGTCCCAGACACGGTCTTACACTGGCTTATATCTCAAGTG
1 CCGATGCCATGTCCCAGACA-TGTCTTACACTGGCTTACATCTCAAG-G
* * * * * *
8479281 --GAAGTCATATCCCAGACATGGACTTACACTGAC-TATCATCTCGTA-G
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTC-AAGG
* *
8479327 CCGACG-CATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGG
* * * * * *
8479373 CCGATG-CATGTTCCAGAAATGTCTTACACTAGCACT-CGTCTCAATG
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGC-TTACATCTCAAGG
8479419 CCGATGCCATGTCCCAGACATGATCTTACACT
1 CCGATGCCATGTCCCAGACATG-TCTTACACT
8479451 AGCTCACACA
Statistics
Matches: 136, Mismatches: 24, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
45 1 0.01
46 63 0.46
47 59 0.43
48 13 0.10
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCTTACATCTCAAGG
Found at i:8481548 original size:37 final size:37
Alignment explanation
Indices: 8481487--8481632 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
8481477 TACGTATGAT
* *
8481487 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8481522 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8481559 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8481596 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8481633 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8481649 original size:46 final size:46
Alignment explanation
Indices: 8481596--8481798 Score: 289
Period size: 46 Copynumber: 4.3 Consensus size: 46
8481586 TAAGTGTAGC
* * **
8481596 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8481642 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8481688 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
8481740 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8481786 TACTTATCACTTT
1 CACTTATCACTTT
8481799 CCCAAAATTT
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 99 0.69
49 2 0.01
52 43 0.30
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:8481761 original size:98 final size:99
Alignment explanation
Indices: 8481596--8481798 Score: 345
Period size: 98 Copynumber: 2.1 Consensus size: 99
8481586 TAAGTGTAGC
* * * *
8481596 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
8481661 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
8481695 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACT
1 CACTTTTCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
*
8481759 TGATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
8481793 CACTTT
1 CACTTT
8481799 CCCAAAATTT
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 89 0.91
99 9 0.09
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (99 bp):
CACTTTTCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8483373 original size:49 final size:50
Alignment explanation
Indices: 8483318--8483521 Score: 241
Period size: 49 Copynumber: 4.0 Consensus size: 50
8483308 TTCGTTTTCT
*
8483318 CGATGCCATAGTCCAACTATGGTCTTACACGTAATCACA-AATCACATAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* * *
8483367 CGATGCCATAGCCCAACTATGGTCTTACACGAAATCACA-TATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
* *
8483416 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATATCACACATATCACTTAC
1 CGATGCCATAGCCCAACTATGGTCTTACAC-G--T---A-ATCACACA-ATCACATAC
* * *
8483474 CGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCACAT
1 CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACAT
8483522 GTTCACATGT
Statistics
Matches: 136, Mismatches: 10, Indels: 17
0.83 0.06 0.10
Matches are distributed among these distances:
49 74 0.54
50 7 0.05
51 7 0.05
52 1 0.01
55 1 0.01
56 6 0.04
57 1 0.01
58 39 0.29
ACGTcount: A:0.32, C:0.30, G:0.14, T:0.24
Consensus pattern (50 bp):
CGATGCCATAGCCCAACTATGGTCTTACACGTAATCACACAATCACATAC
Found at i:8483488 original size:58 final size:59
Alignment explanation
Indices: 8483402--8483520 Score: 231
Period size: 58 Copynumber: 2.0 Consensus size: 59
8483392 TACACGAAAT
8483402 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACAT-ATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
8483460 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
1 CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
8483519 CA
1 CA
8483521 TGTTCACATG
Statistics
Matches: 60, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 54 0.90
59 6 0.10
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (59 bp):
CACATATCACTTACCGATGCCATAGCCCAGCTATGGTCTTACACGGAATCACATAATCA
Found at i:8483501 original size:28 final size:28
Alignment explanation
Indices: 8483411--8483501 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
8483401 TCACATATCA
8483411 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
* * **
8483439 CTTACACGGAAT-CACATATCACA-CATAT-CA
1 CTTAC-C-G-ATGC-CATAGCCCAGC-TATGGT
8483469 CTTACCGATGCCATAGCCCAGCTATGGT
1 CTTACCGATGCCATAGCCCAGCTATGGT
8483497 CTTAC
1 CTTAC
8483502 ACGGAATCAC
Statistics
Matches: 47, Mismatches: 8, Indels: 16
0.66 0.11 0.23
Matches are distributed among these distances:
27 12 0.26
28 13 0.28
29 2 0.04
30 8 0.17
31 12 0.26
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (28 bp):
CTTACCGATGCCATAGCCCAGCTATGGT
Found at i:8484835 original size:37 final size:37
Alignment explanation
Indices: 8484774--8484919 Score: 242
Period size: 37 Copynumber: 4.0 Consensus size: 37
8484764 TACGTATGAT
* *
8484774 CACTTATCAC-TTG-TCCCTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8484809 CACCTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8484846 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
*
8484883 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGC
1 CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
8484920 TAAAGCTATC
Statistics
Matches: 104, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
35 9 0.09
36 3 0.03
37 92 0.88
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (37 bp):
CACTTATCACTTTGTTTCTTGATCAGATAAGTGTAGC
Found at i:8484936 original size:46 final size:46
Alignment explanation
Indices: 8484883--8485085 Score: 289
Period size: 46 Copynumber: 4.3 Consensus size: 46
8484873 TAAGTGTAGC
* * **
8484883 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8484929 CACTTATCACTTTGTCTCTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8484975 CACTTATCACTTTTCACTTGTCACTTGATCAGATAAGTGTAGCCGAAGCTAT
1 CACTTATCAC---T---TTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
8485027 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
*
8485073 TACTTATCACTTT
1 CACTTATCACTTT
8485086 CCCAAAATTT
Statistics
Matches: 144, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
46 99 0.69
49 2 0.01
52 43 0.30
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTATAGCCGAAGCTAT
Found at i:8485048 original size:98 final size:99
Alignment explanation
Indices: 8484883--8485085 Score: 345
Period size: 98 Copynumber: 2.1 Consensus size: 99
8484873 TAAGTGTAGC
* * * *
8484883 CACTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCTCT
1 CACTTTTCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
8484948 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
*
8484982 CACTTTTCAC-TTGTCACTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTTGTCACT
1 CACTTTTCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
*
8485046 TGATCAGATAAGTATAGCCGAAGCTATTACTTAT
66 TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
8485080 CACTTT
1 CACTTT
8485086 CCCAAAATTT
Statistics
Matches: 98, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
98 89 0.91
99 9 0.09
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (99 bp):
CACTTTTCACTTTGTCACTTGATCAGATAAGTGTAGCCAAAGCTATCACTTATCACTTTGTCACT
TGATCAGATAAGTATAGCCGAAGCTATCACTTAT
Found at i:8504174 original size:46 final size:46
Alignment explanation
Indices: 8504122--8504438 Score: 426
Period size: 46 Copynumber: 7.0 Consensus size: 46
8504112 GCTCTCTGAA
** *
8504122 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * *
8504168 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
8504214 ATGAAA-AAATAAGACCATGG-TGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
8504258 -GGAAATGAATAAGACCATGGTTGAAAAATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
8504303 ATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
8504349 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
8504395 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
8504439 TCAAAGATAA
Statistics
Matches: 243, Mismatches: 24, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
43 4 0.02
44 35 0.14
45 33 0.14
46 171 0.70
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.20
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:8505068 original size:10 final size:9
Alignment explanation
Indices: 8505053--8505079 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8505043 AAGATTTTGG
8505053 AAAAAAAAT
1 AAAAAAAAT
8505062 AAAAAAAAT
1 AAAAAAAAT
8505071 AAAAAAAAT
1 AAAAAAAAT
8505080 TCTATGATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8506924 original size:13 final size:14
Alignment explanation
Indices: 8506893--8506925 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8506883 TTATTTACTT
8506893 AAAAATAATTTTTA
1 AAAAATAATTTTTA
*
8506907 TAAAATAA-TTTTA
1 AAAAATAATTTTTA
8506920 AAAAAT
1 AAAAAT
8506926 CTACTAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
13 10 0.59
14 7 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAAAATAATTTTTA
Found at i:8510196 original size:17 final size:18
Alignment explanation
Indices: 8510176--8510211 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8510166 TTGAATAATT
*
8510176 TGGAT-ATTTTATTTAAA
1 TGGATCATTTTATTGAAA
8510193 TGGATCATTTTATTGAAA
1 TGGATCATTTTATTGAAA
8510211 T
1 T
8510212 TTTTTTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.50
Consensus pattern (18 bp):
TGGATCATTTTATTGAAA
Found at i:8517713 original size:26 final size:24
Alignment explanation
Indices: 8517666--8517713 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
8517656 TACAAAAATA
* *
8517666 ATTTTTTTTTTGGGTTTTTGCTTC
1 ATTTTTTTTTTGCGTTTATGCTTC
8517690 ATTTTTTTTTGTGCGTGTTATGCT
1 ATTTTTTTTT-TGCGT-TTATGCT
8517714 AACTTTAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 10 0.50
25 4 0.20
26 6 0.30
ACGTcount: A:0.06, C:0.08, G:0.19, T:0.67
Consensus pattern (24 bp):
ATTTTTTTTTTGCGTTTATGCTTC
Found at i:8518981 original size:19 final size:19
Alignment explanation
Indices: 8518950--8518991 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8518940 TAAAATTATT
* *
8518950 AAAACAAATAAAATATGTA
1 AAAACAAATAAAAAATATA
8518969 AAAACTAAA-AAAAAATATA
1 AAAAC-AAATAAAAAATATA
8518988 AAAA
1 AAAA
8518992 AATTTATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (19 bp):
AAAACAAATAAAAAATATA
Found at i:8521711 original size:27 final size:26
Alignment explanation
Indices: 8521650--8521714 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 26
8521640 AGATGCTTAC
*
8521650 ATATAAAATGTTAATTTACATAAAAAA
1 ATATAAAATGTTAA-TTAAATAAAAAA
8521677 ATGAATAAAATGTTAA-TAAATAAAAAAGA
1 AT--ATAAAATGTTAATTAAAT-AAAAA-A
8521706 ATATAAAAT
1 ATATAAAAT
8521715 TAGTAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
27 13 0.39
28 5 0.15
29 15 0.45
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.29
Consensus pattern (26 bp):
ATATAAAATGTTAATTAAATAAAAAA
Found at i:8525757 original size:2 final size:2
Alignment explanation
Indices: 8525752--8525786 Score: 61
Period size: 2 Copynumber: 17.0 Consensus size: 2
8525742 ATATATATAT
8525752 AG AG AG AG AG AG AG AG AG AG AG AG AG AG TAG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG -AG AG AG
8525787 CATAACAAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 30 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.03
Consensus pattern (2 bp):
AG
Found at i:8528146 original size:3 final size:3
Alignment explanation
Indices: 8528138--8528167 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8528128 CAGTTCTCTA
8528138 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
8528168 AATTGCTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:8532223 original size:31 final size:31
Alignment explanation
Indices: 8532182--8532242 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
8532172 AAAATAAATG
8532182 TAAAATTTAAAAAATCTTTGAATCAATGAGT
1 TAAAATTTAAAAAATCTTTGAATCAATGAGT
*
8532213 TAAATTTTAAAAAATCTTTGAATCAATGAG
1 TAAAATTTAAAAAATCTTTGAATCAATGAG
8532243 AATATTCTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.36
Consensus pattern (31 bp):
TAAAATTTAAAAAATCTTTGAATCAATGAGT
Found at i:8533218 original size:20 final size:19
Alignment explanation
Indices: 8533180--8533218 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
8533170 TAAGAAATTG
*
8533180 AATTTTTTAATATTTTTTT
1 AATTTTTTAATATTATTTT
*
8533199 AATTTATTTCATATTATTTT
1 AATTT-TTTAATATTATTTT
8533219 TATAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (19 bp):
AATTTTTTAATATTATTTT
Found at i:8533546 original size:23 final size:23
Alignment explanation
Indices: 8533520--8533565 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8533510 ATAGAAAACT
8533520 GAAATAAAAACTACAATTGAAAG
1 GAAATAAAAACTACAATTGAAAG
** *
8533543 GAAATCTAAATTACAATTGAAAG
1 GAAATAAAAACTACAATTGAAAG
8533566 TAAAATTAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.22
Consensus pattern (23 bp):
GAAATAAAAACTACAATTGAAAG
Found at i:8534203 original size:21 final size:20
Alignment explanation
Indices: 8534175--8534213 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
8534165 TTTGGGATTA
8534175 AAATATGAAAATGATAATCC
1 AAATATGAAAATGATAATCC
8534195 AAATGATGAAAATGATAAT
1 AAAT-ATGAAAATGATAAT
8534214 TATTTTTTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.56, C:0.05, G:0.13, T:0.26
Consensus pattern (20 bp):
AAATATGAAAATGATAATCC
Found at i:8538363 original size:19 final size:19
Alignment explanation
Indices: 8538341--8538386 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
8538331 ATAAAGCATA
8538341 TGAATTGGTATTCAAGATG
1 TGAATTGGTATTCAAGATG
8538360 TGAATTGGTATTCAAGATG
1 TGAATTGGTATTCAAGATG
8538379 TGAATTGG
1 TGAATTGG
8538387 ATTGGTATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.28, T:0.37
Consensus pattern (19 bp):
TGAATTGGTATTCAAGATG
Found at i:8538745 original size:40 final size:40
Alignment explanation
Indices: 8538663--8538746 Score: 107
Period size: 41 Copynumber: 2.1 Consensus size: 40
8538653 TTAGCATTTT
**
8538663 AATTGATTTTTTAAAATTTTAAAAATTCAAAAAAATTTCAA
1 AATTGATTTTTTAAAA-TTTAAAAATTCAAAAAAATGACAA
* *
8538704 AATTTATTTTTTAAAA-TTAAAAATTATAAAAAAATGACAA
1 AATTGATTTTTTAAAATTTAAAAATT-CAAAAAAATGACAA
8538744 AAT
1 AAT
8538747 AATTAAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
39 9 0.24
40 14 0.37
41 15 0.39
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (40 bp):
AATTGATTTTTTAAAATTTAAAAATTCAAAAAAATGACAA
Found at i:8543256 original size:24 final size:24
Alignment explanation
Indices: 8543224--8543269 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
8543214 TAGCATAGAG
8543224 ATCCCCCAAATACCACAAAACCAT
1 ATCCCCCAAATACCACAAAACCAT
*
8543248 ATCCCCCAAATACTACAAAACC
1 ATCCCCCAAATACCACAAAACC
8543270 CAATTCGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.13
Consensus pattern (24 bp):
ATCCCCCAAATACCACAAAACCAT
Found at i:8545354 original size:390 final size:389
Alignment explanation
Indices: 8544659--8546209 Score: 2652
Period size: 389 Copynumber: 4.0 Consensus size: 389
8544649 GTAAACATAG
* *
8544659 CCACGGGTCGTCTGTCTTTATGATGAATGACTTGATCACTATTTAGTAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
8544724 AAGGAAGATGTAATGGTTACCATGAGATAAAATAGGATCATATTGGGAGAACTGATATTATCCCA
66 AAGGAAGATGTAATGGTTACCATGAGAT-AAATAGGATCATATTGGGAGAACTGATATTATCCCA
*
8544789 AAAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGACGAACTCTGAGT
130 AAAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACGAACTCTGAGT
* * *
8544854 AGTTGCTTACGTAATGGTATGCCATTGGGGAGAGCTCAGTCACGATACTACAGTGGAGTGACTTT
195 AGTTGCTTTCGTAATGGTATGTCATTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTT
* *
8544919 GTGACTAAATGAGTTTATTATTAATAGGCGAAAAGCTGGAACTTAATTACAAACCATTTGAGCCT
260 GTGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCT
* * * * * *
8544984 CAACTACATATATCCAATCGGTCCCTCCGCTAACTCATTAAAACCATAAATGAATTGCAAAGTAG
325 CAACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
* *
8545049 CCACCGGTCGTCCGTCTTTTTGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
* * * *
8545114 AAGAAAGATGTAATGGTTACCATAAGATAAAATAGTATCACATTGGGAGAACTGATATTATCCCA
66 AAGGAAGATGTAATGGTTACCATGAGAT-AAATAGGATCATATTGGGAGAACTGATATTATCCCA
* *
8545179 AAAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTAGATGAACTCTGAGT
130 AAAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACGAACTCTGAGT
* * * *
8545244 AGTTACTTTCGTAATGGTATGTCGTTGGGGAGAGTTCAGTCACGATACTACAGTGGAATTACTTT
195 AGTTGCTTTCGTAATGGTATGTCATTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTT
* *
8545309 GTGACTAAATGTGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCTT
260 GTGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCT
*
8545374 CAACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATCAATGAATTGTAACGTAA
325 CAACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
8545439 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
* *
8545504 AAGGAAGATGTAATGGTTACCATGAGATAAATAAGATCATATTGGGAGAACTGAAATTATCCCAA
66 AAGGAAGATGTAATGGTTACCATGAGATAAATAGGATCATATTGGGAGAACTGATATTATCCCAA
* *
8545569 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAGGTCATTGGATGAACTCTGAGTA
131 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACGAACTCTGAGTA
* * * *
8545634 GTTTCTTTCGTAATGGTATGTCGTTGGGGAGAGTTCAGTCACGATACTACAGTGAAATGACTTTG
196 GTTGCTTTCGTAATGGTATGTCATTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
8545699 TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
261 TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
*
8545764 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATCAATGAATTGTAACGTAA
326 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
8545828 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
1 CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
*
8545893 AAGGAAGATGTAATGGTGACCATGAGATAAATAGGATCATATTGGGAGAACTGATATTATCCCAA
66 AAGGAAGATGTAATGGTTACCATGAGATAAATAGGATCATATTGGGAGAACTGATATTATCCCAA
*
8545958 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACAAACTCTGAGTA
131 AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACGAACTCTGAGTA
* *
8546023 GTTGCTTTCGTAATGGTATATCATTGGGGAGAGCTCAATCACGATACTACAGTGGAATGACTTTG
196 GTTGCTTTCGTAATGGTATGTCATTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
* * *
8546088 TGACTAAATGAGTTTATTATTAATAGGCAAAAAGCTGGAACTTAATTACAAACCATTTGAGCCTC
261 TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
** *
8546153 AACTACATATATCCAATCGGTCCCTCAACTAGCTCATTGAAACTAAAAATGAATTGT
326 AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGT
8546210 GTGTTTAAAT
Statistics
Matches: 1098, Mismatches: 63, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
389 648 0.59
390 450 0.41
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (389 bp):
CCACGGGTCGTCCGTCTTTATGATGAATGACTTGATCACTATTTAATAGTGATTGATTTTTAATG
AAGGAAGATGTAATGGTTACCATGAGATAAATAGGATCATATTGGGAGAACTGATATTATCCCAA
AAAGATCAATGATACCTTATGAGGGTAACACACTTATGACAAAGTCATTGGACGAACTCTGAGTA
GTTGCTTTCGTAATGGTATGTCATTGGGGAGAGCTCAGTCACGATACTACAGTGGAATGACTTTG
TGACTAAATGAGTTTATTATTAATAGACGAAAAGCTGAAACTTAATTACAAACCATTTGAGCCTC
AACTACATATATCCAATCGGTCCCTCCGCTAGCTCATTGAAACTATAAATGAATTGTAACGTAA
Found at i:8548810 original size:24 final size:24
Alignment explanation
Indices: 8548772--8548826 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
8548762 TACATGTTAT
* *
8548772 CAACATCATCTTTCAATTTAGCAC
1 CAACATCATCATTCAATCTAGCAC
* *
8548796 CAACATTATCATTCAATCTATCAC
1 CAACATCATCATTCAATCTAGCAC
8548820 CAACATC
1 CAACATC
8548827 CCAATTTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.31, G:0.02, T:0.31
Consensus pattern (24 bp):
CAACATCATCATTCAATCTAGCAC
Found at i:8553606 original size:19 final size:19
Alignment explanation
Indices: 8553574--8553629 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
8553564 ATACAAATTT
8553574 TAAAAAA-TAAAAAATATA
1 TAAAAAATTAAAAAATATA
* *
8553592 T-CAATATTGAAAAAAT-TA
1 TAAAAAATT-AAAAAATATA
8553610 TAAAAAATTAAAAAATATA
1 TAAAAAATTAAAAAATATA
8553629 T
1 T
8553630 TAACTTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
17 3 0.10
18 12 0.40
19 15 0.50
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
TAAAAAATTAAAAAATATA
Found at i:8553616 original size:37 final size:36
Alignment explanation
Indices: 8553575--8553654 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 36
8553565 TACAAATTTT
* *
8553575 AAAAAATAAAAAATATATCAA-TATTGAAAAAATTATA
1 AAAAAATAAAAAATATATCAACT-TT-AAAAAAATACA
* *
8553612 AAAAATTAAAAAATATATTAACTTTAAAAAAATACA
1 AAAAAATAAAAAATATATCAACTTTAAAAAAATACA
8553648 AAAAAAT
1 AAAAAAT
8553655 CTTTTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
36 15 0.41
37 21 0.57
38 1 0.03
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (36 bp):
AAAAAATAAAAAATATATCAACTTTAAAAAAATACA
Found at i:8553651 original size:36 final size:36
Alignment explanation
Indices: 8553575--8553652 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
8553565 TACAAATTTT
* *
8553575 AAAAAATAAAAAATATATCAATATTGAAAAAATTAT
1 AAAAAATAAAAAATATATCAATATTGAAAAAAATAC
*
8553611 AAAAAATTAAAAAATATATTAACT-TT-AAAAAAATAC
1 AAAAAA-TAAAAAATATATCAA-TATTGAAAAAAATAC
8553647 AAAAAA
1 AAAAAA
8553653 ATCTTTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 20 0.54
37 16 0.43
38 1 0.03
ACGTcount: A:0.69, C:0.04, G:0.01, T:0.26
Consensus pattern (36 bp):
AAAAAATAAAAAATATATCAATATTGAAAAAAATAC
Found at i:8568899 original size:6 final size:6
Alignment explanation
Indices: 8568888--8568922 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
8568878 ATTGATATAA
* *
8568888 GAGTAG GAGTAG TAGTAG GAGTAG GAGTAG AAGTA
1 GAGTAG GAGTAG GAGTAG GAGTAG GAGTAG GAGTA
8568923 AAAGTAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (6 bp):
GAGTAG
Found at i:8568911 original size:18 final size:18
Alignment explanation
Indices: 8568888--8568922 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8568878 ATTGATATAA
*
8568888 GAGTAGGAGTAGTAGTAG
1 GAGTAGGAGTAGAAGTAG
8568906 GAGTAGGAGTAGAAGTA
1 GAGTAGGAGTAGAAGTA
8568923 AAAGTAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (18 bp):
GAGTAGGAGTAGAAGTAG
Found at i:8568928 original size:18 final size:18
Alignment explanation
Indices: 8568889--8568928 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8568879 TTGATATAAG
* **
8568889 AGTAGGAGTAGTAGTAGG
1 AGTAGGAGTAGAAGTAAA
8568907 AGTAGGAGTAGAAGTAAA
1 AGTAGGAGTAGAAGTAAA
8568925 AGTA
1 AGTA
8568929 AAATTAGTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.38, T:0.20
Consensus pattern (18 bp):
AGTAGGAGTAGAAGTAAA
Found at i:8569174 original size:41 final size:41
Alignment explanation
Indices: 8569117--8569199 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
8569107 TTAACAAAAG
*
8569117 TAACAACTTACTCATTACTCTAATGCACAAAAATTAATTTA
1 TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
*
8569158 TAACAACTTACTCATTAATCTAATGTACAAAAATTAATTTA
1 TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
8569199 T
1 T
8569200 CTACTTTTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.45, C:0.17, G:0.02, T:0.36
Consensus pattern (41 bp):
TAACAACTTACTCATTAATCTAATGCACAAAAATTAATTTA
Found at i:8573498 original size:12 final size:12
Alignment explanation
Indices: 8573481--8573528 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
8573471 ACAGGGAAAA
*
8573481 GATGATGACGAG
1 GATGATGACGAT
*
8573493 GATGATGATGAT
1 GATGATGACGAT
*
8573505 GATGAAGACGAT
1 GATGATGACGAT
*
8573517 GACGATGACGAT
1 GATGATGACGAT
8573529 AACTAAATTC
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.21
Consensus pattern (12 bp):
GATGATGACGAT
Found at i:8576666 original size:18 final size:19
Alignment explanation
Indices: 8576635--8576681 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
8576625 ATAAATTGCC
8576635 AAATAATTTA-AAAAA-TCA
1 AAAT-ATTTATAAAAATTCA
*
8576653 AAATATTTATAAAAATTCT
1 AAATATTTATAAAAATTCA
8576672 AAA-ATTTATA
1 AAATATTTATA
8576682 TTTTTAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATATTTATAAAAATTCA
Found at i:8576667 original size:19 final size:18
Alignment explanation
Indices: 8576643--8576681 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
8576633 CCAAATAATT
8576643 TAAAAAATCAAAATATTTA
1 TAAAAAATCAAAA-ATTTA
* *
8576662 TAAAAATTCTAAAATTTA
1 TAAAAAATCAAAAATTTA
8576680 TA
1 TA
8576682 TTTTTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAAAATCAAAAATTTA
Found at i:8578328 original size:25 final size:25
Alignment explanation
Indices: 8578299--8578410 Score: 172
Period size: 25 Copynumber: 4.5 Consensus size: 25
8578289 CAAATAACAA
8578299 GCCACAAAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
8578324 GCCACAAAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
*
8578349 GCCACATAGGCTTTCTAGAGAATTC
1 GCCACAAAGGCTTTCTAGAGAATTC
* *
8578374 GCCACAAAGGCTTT-TCAAAGGATTC
1 GCCACAAAGGCTTTCT-AGAGAATTC
*
8578399 GCTACAAAGGCT
1 GCCACAAAGGCT
8578411 CTCCATGAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
24 1 0.01
25 80 0.99
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (25 bp):
GCCACAAAGGCTTTCTAGAGAATTC
Found at i:8582072 original size:40 final size:40
Alignment explanation
Indices: 8582007--8582112 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
8581997 ATCCAATGTT
* *
8582007 CCATTTCATATATC-TATTTCCATATAACAAATTCATATAA
1 CCATTTCATATATCAT-TTTTCATATAACAAAGTCATATAA
** * ** *
8582047 TTATTTCATATATCATTTTTTATATAACCGAGTCATATGA
1 CCATTTCATATATCATTTTTCATATAACAAAGTCATATAA
8582087 CCATTTCATATATCATTTTTCATATA
1 CCATTTCATATATCATTTTTCATATA
8582113 TTATTTTTTC
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 53 0.98
41 1 0.02
ACGTcount: A:0.35, C:0.17, G:0.03, T:0.45
Consensus pattern (40 bp):
CCATTTCATATATCATTTTTCATATAACAAAGTCATATAA
Found at i:8582123 original size:15 final size:14
Alignment explanation
Indices: 8582090--8582120 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8582080 CATATGACCA
8582090 TTTCATATATCATT
1 TTTCATATATCATT
*
8582104 TTTCATATATTATT
1 TTTCATATATCATT
8582118 TTT
1 TTT
8582121 TCACCTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.65
Consensus pattern (14 bp):
TTTCATATATCATT
Found at i:8591079 original size:24 final size:25
Alignment explanation
Indices: 8591020--8591090 Score: 108
Period size: 24 Copynumber: 2.9 Consensus size: 25
8591010 AAGCAGGCCC
*
8591020 ATATTCATAGCTCATGTGAGCACTT
1 ATATTCACAGCTCATGTGAGCACTT
* *
8591045 ACATTCACAGCTCGTGTGAGCA-TT
1 ATATTCACAGCTCATGTGAGCACTT
8591069 ATATTCACAGCTCATGTGAGCA
1 ATATTCACAGCTCATGTGAGCA
8591091 AATTTTATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
24 22 0.54
25 19 0.46
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (25 bp):
ATATTCACAGCTCATGTGAGCACTT
Found at i:8593550 original size:19 final size:20
Alignment explanation
Indices: 8593518--8593555 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8593508 TCATCATGTT
8593518 TATGTTGATAATTACGATTG
1 TATGTTGATAATTACGATTG
* *
8593538 TATG-TGATTATTATGATT
1 TATGTTGATAATTACGATT
8593556 TAATGTCAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.50
Consensus pattern (20 bp):
TATGTTGATAATTACGATTG
Found at i:8595044 original size:18 final size:19
Alignment explanation
Indices: 8595017--8595065 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 19
8595007 GTATGAACAA
8595017 ATTAATTAATCTAATAATATAT
1 ATTAATTAAT-TAAT-AT-TAT
8595039 ATTAATTAATTAATATTAT
1 ATTAATTAATTAATATTAT
*
8595058 ATTTATTA
1 ATTAATTA
8595066 TCATCATATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 10 0.38
20 2 0.08
21 4 0.15
22 10 0.38
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTAATTAATTAATATTAT
Found at i:8595093 original size:36 final size:32
Alignment explanation
Indices: 8595035--8595118 Score: 80
Period size: 36 Copynumber: 2.5 Consensus size: 32
8595025 ATCTAATAAT
* *
8595035 ATATATTAAT-TAATTAATATTATATTTATTATCA
1 ATATAATAATATAA-TAA-ATTAT-TTTAATATCA
8595069 TCATATAATAATACTAATAAATTATTTTAATATCA
1 --ATATAATAATA-TAATAAATTATTTTAATATCA
*
8595104 ATTTAATAATATAAT
1 ATATAATAATATAAT
8595119 TAACAATAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
32 4 0.09
33 10 0.23
35 9 0.21
36 14 0.33
37 3 0.07
38 3 0.07
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (32 bp):
ATATAATAATATAATAAATTATTTTAATATCA
Found at i:8595240 original size:12 final size:13
Alignment explanation
Indices: 8595221--8595265 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 13
8595211 TAAGTTTCAA
*
8595221 TACTTTTTTGCTT
1 TACTTTTTTACTT
8595234 T-C-TTTTTACTT
1 TACTTTTTTACTT
8595245 TACTTTTTT--TT
1 TACTTTTTTACTT
8595256 TACTTTTTTA
1 TACTTTTTTA
8595266 AAATTTTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
11 20 0.71
12 2 0.07
13 6 0.21
ACGTcount: A:0.11, C:0.13, G:0.02, T:0.73
Consensus pattern (13 bp):
TACTTTTTTACTT
Found at i:8595255 original size:16 final size:16
Alignment explanation
Indices: 8595231--8595261 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8595221 TACTTTTTTG
8595231 CTTTCTTTTTACTTTA
1 CTTTCTTTTTACTTTA
*
8595247 CTTTTTTTTTACTTT
1 CTTTCTTTTTACTTT
8595262 TTTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.16, G:0.00, T:0.74
Consensus pattern (16 bp):
CTTTCTTTTTACTTTA
Found at i:8595413 original size:25 final size:25
Alignment explanation
Indices: 8595349--8595413 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
8595339 TTTTCTTGAA
*
8595349 TTTTTAT-ATATTTTTAAAATCTATT
1 TTTTTATGA-ATTTTTAAAATATATT
* *
8595374 TTTTTCTGAAATTTT-AAATATATT
1 TTTTTATGAATTTTTAAAATATATT
*
8595398 ATTTTTATGAGTTTTT
1 -TTTTTATGAATTTTT
8595414 TAAAGTTTTA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
24 8 0.25
25 23 0.72
26 1 0.03
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (25 bp):
TTTTTATGAATTTTTAAAATATATT
Found at i:8597078 original size:22 final size:23
Alignment explanation
Indices: 8597040--8597086 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
8597030 GTTCTTGTAC
8597040 TTTTATTTTATAAA-TTTAAAAT
1 TTTTATTTTATAAATTTTAAAAT
*
8597062 TTTTATTTT-TCATATTTTAAAAT
1 TTTTATTTTAT-AAATTTTAAAAT
8597085 TT
1 TT
8597087 AGGTCCAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 11 0.50
23 10 0.45
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (23 bp):
TTTTATTTTATAAATTTTAAAAT
Found at i:8598421 original size:30 final size:30
Alignment explanation
Indices: 8598380--8598437 Score: 75
Period size: 28 Copynumber: 1.9 Consensus size: 30
8598370 AAAGTAATGG
*
8598380 GGTTAAAAGTGTGAATATTTAAAA-GTTGAGA
1 GGTTAAAAGTGT-AA-ATTCAAAAGGTTGAGA
8598411 GGTT-AAAGTGTAAATTCAAAAGGTTGA
1 GGTTAAAAGTGTAAATTCAAAAGGTTGA
8598438 AAGACTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 7 0.28
29 7 0.28
30 7 0.28
31 4 0.16
ACGTcount: A:0.41, C:0.02, G:0.26, T:0.31
Consensus pattern (30 bp):
GGTTAAAAGTGTAAATTCAAAAGGTTGAGA
Found at i:8599999 original size:132 final size:132
Alignment explanation
Indices: 8599626--8600034 Score: 447
Period size: 132 Copynumber: 3.1 Consensus size: 132
8599616 CTTATTTTTT
* * * *
8599626 AGAGTTTTTAAGAAACATGAGG-GAAATTCCAAAGGGGATGTTCGATTATTTGGAACCAACAGGA
1 AGAGTTTTTAA-AAACATG-GGTGAAATT-CAAAAGGGATATTCGATTATTTTGAACAAAC-GGA
* * * * * **
8599690 AATTGCAACCCAACATGATAGGGCACGATTCCCCAAATTGCCAAACATCGAATATTACCTTCGTT
62 AATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCGTT
8599755 TT--GG
127 TTAAGG
** * **
8599759 AGAGTTTTTAGAAAACATAAGTGAAATTCAAAAAGGACCTTCGATTATTTTGAACAAACGAGAAA
1 AGAGTTTTTA-AAAACATGGGTGAAATTCAAAAGGGATATTCGATTATTTTGAACAAACG-GAAA
* * *
8599824 TTGCCACCCAACACGTTAGGGCAC-AATCCAGCGAATTGCCAAATATCGAATATCGCCTCCGTTT
64 TTGCAACCCAACACGTTAGGGCACGATTCC-GCGAATTGCCAAATATCGAATATCGCCTTCGTTT
8599888 TAAGG
128 TAAGG
* * *
8599893 -G-GTTTTTAAAAGACATGGGTGAAATTCTAAAGGGATATTCGATCATTTTGAGCAAACGCGAAA
1 AGAGTTTTTAAAA-ACATGGGTGAAATTCAAAAGGGATATTCGATTATTTTGAACAAACG-GAAA
* * *
8599956 TTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAATCTCGTCTTCGTTTT
64 TTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCGTTTT
8600021 AA--
129 AAGG
*
8600023 AGAATTTTTAAA
1 AGAGTTTTTAAA
8600035 TGAATAATTA
Statistics
Matches: 232, Mismatches: 34, Indels: 21
0.81 0.12 0.07
Matches are distributed among these distances:
131 9 0.04
132 193 0.83
133 27 0.12
134 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (132 bp):
AGAGTTTTTAAAAACATGGGTGAAATTCAAAAGGGATATTCGATTATTTTGAACAAACGGAAATT
GCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAATATCGAATATCGCCTTCGTTTTAA
GG
Found at i:8602966 original size:45 final size:45
Alignment explanation
Indices: 8602888--8603232 Score: 199
Period size: 45 Copynumber: 7.8 Consensus size: 45
8602878 GGCTTGCTTA
* *
8602888 AATCTGCTTCACTGCAACTTCA-GGAAACCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGA-CAAGATTCGTCGTCTTC
* * *
8602933 AATTTGCTCCACTACAACTTCAGGGAGACAAGA-TC-TACAATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTCGT-C-GTCTTC
** * * * * ** * * *
8602978 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGGTGGT-GGCTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTCGTCGTCTTC
* * * *
8603021 AATCTGCTTCACTGCAACTTCAGGAAG-CTAAGATTCGTCTTCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGAC-AAGATTCGTCGTCTTC
* * * *
8603066 GATTTGCCCCACTGCAACTTCAGGGAGACAAGA-TC-TACAATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTCGT-C-GTCTTC
** * * * * * * *
8603111 AGCCTACTCCACTACAACTTTAGGGAG-CTAGGA-TGGT-GGCTTA
1 AATCTGCTCCACTGCAACTTCAGGGAGAC-AAGATTCGTCGTCTTC
* * *
8603154 AATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTCGTCGTCTTC
* * *
8603199 AATTTTCCCCACTGCAACTTCAGGGAGACAAGAT
1 AATCTGCTCCACTGCAACTTCAGGGAGACAAGAT
8603233 CTACAATCTT
Statistics
Matches: 218, Mismatches: 67, Indels: 30
0.69 0.21 0.10
Matches are distributed among these distances:
43 52 0.24
44 19 0.09
45 140 0.64
46 7 0.03
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGACAAGATTCGTCGTCTTC
Found at i:8603078 original size:133 final size:133
Alignment explanation
Indices: 8602811--8603251 Score: 685
Period size: 133 Copynumber: 3.3 Consensus size: 133
8602801 TCGGTCTGCT
* ** * *
8602811 CCACTGCAACTTCGGGGAGACAAGATCTACAATCTTCAGCCTGTTACC-CTACGAC-TTGGGGAG
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT-CCACTACAACTTTAGGGAG
* * *
8602874 TTA--A-GGCTTGCTTAAATCTGCTTCACTGCAACTTCAGGAAACCAAGATTCGTCGTCTTCAAT
65 CTAGGATGG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAAT
*
8602936 TTGCT
129 TTGCC
*
8602941 CCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
* * * **
8603006 TAGGGTGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCTAAGATTCGTCTTCTTTGATTT
66 TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
8603071 GCC
131 GCC
8603074 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
8603139 TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
66 TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
*
8603204 TCC
131 GCC
8603207 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT
1 CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT
8603252 TGTAATGGCC
Statistics
Matches: 284, Mismatches: 22, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
129 2 0.01
130 47 0.17
131 9 0.03
133 224 0.79
134 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (133 bp):
CCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGAGC
TAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAATTT
GCC
Found at i:8606474 original size:133 final size:133
Alignment explanation
Indices: 8606236--8606489 Score: 436
Period size: 133 Copynumber: 1.9 Consensus size: 133
8606226 ACACTATTCC
* *
8606236 AATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTGCTTCGCTGCAACTTCAGGAATCCAAG
1 AATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTGCTTCGCTGCAACTTCAAGAAGCCAAG
* * *
8606301 ATTTGTCGTTTTCGATTTGCCCCACTGCCACTTCAGGGAGACAAGATCTACAATCTTCAGCCTAC
66 ATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTAC
8606366 TCT
131 TCT
* *
8606369 AATACAACTTTAGGGAGTTAGGATGGTGGCTTAAATCTGCTTCGCTGCAACTTCAAGAAGCCAAG
1 AATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTGCTTCGCTGCAACTTCAAGAAGCCAAG
*
8606434 ATTCGTTGTCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCT
66 ATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCT
8606490 GTTTCATAGG
Statistics
Matches: 113, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
133 113 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (133 bp):
AATACAACTTTAGGGAGCTAGGACGGTGGCTTAAATCTGCTTCGCTGCAACTTCAAGAAGCCAAG
ATTCGTCGTCTTCGATTTGCCCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTAC
TCT
Found at i:8607727 original size:8 final size:8
Alignment explanation
Indices: 8607714--8607762 Score: 57
Period size: 8 Copynumber: 6.1 Consensus size: 8
8607704 TCTCCTTTTC
8607714 TTTTCTTT
1 TTTTCTTT
8607722 TTTTCTTT
1 TTTTCTTT
8607730 TTTT-TTCT
1 TTTTCTT-T
8607738 TCTTTCTTT
1 T-TTTCTTT
*
8607747 CTTTCTTT
1 TTTTCTTT
8607755 TTTT-TTT
1 TTTTCTTT
8607762 T
1 T
8607763 GAAGGTCTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
7 6 0.17
8 24 0.67
9 4 0.11
10 2 0.06
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTCTTT
Found at i:8607744 original size:4 final size:4
Alignment explanation
Indices: 8607710--8607754 Score: 51
Period size: 4 Copynumber: 11.8 Consensus size: 4
8607700 GACCTCTCCT
*
8607710 TTTC TTTTC TTTT TTTC TTT- TTT- TTTC -TTC TTTC TTTC TTTC TTT
1 TTTC -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTT
8607755 TTTTTTTTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
3 9 0.25
4 23 0.64
5 4 0.11
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (4 bp):
TTTC
Found at i:8610325 original size:19 final size:19
Alignment explanation
Indices: 8610303--8610340 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8610293 AAGTAAAACA
*
8610303 ATGCAATGCAATGCAAATG
1 ATGCAATACAATGCAAATG
8610322 ATGCAATACAATGCAAATG
1 ATGCAATACAATGCAAATG
8610341 CATGGGATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (19 bp):
ATGCAATACAATGCAAATG
Found at i:8612107 original size:132 final size:132
Alignment explanation
Indices: 8611898--8612178 Score: 320
Period size: 132 Copynumber: 2.1 Consensus size: 132
8611888 CGGTTCTTCA
* * * ** *
8611898 AATTTCTAAACATCGAGCATTGCCTTATTTTTTAGAGTTTTTAAGAAACATGAGGGAAATTCCAA
1 AATTGCTAAACATCGAACATTACCTTATTTTAGAGAGTTTTTAAGAAACATAAGGGAAATTCCAA
* ** *
8611963 AGGGGATGTTCGATTATTTGGAACCAACA-G-GAAATTGCAACCCAACACGATAGGGCACGATTC
66 AAGGGACCTTCGATTATTTGGAA-CAA-ATGAGAAATTGCAACCCAACACGATAGGGCAC-AATC
8612026 CC-CG
128 CCGCG
* *
8612030 AATTGCTAAACATCGAACATTACCTTCGTTTTAGAGAGTTTTT-AGAAAACATAAGTGAAATT-C
1 AATTGCTAAACATCGAACATTACCTT-ATTTTAGAGAGTTTTTAAG-AAACATAAGGGAAATTCC
* * * *
8612093 AAAAGGGACCTTCGATTATTTTGAACAAATGAGAAATTGCCACCTAACACGTTAGGGCACAATCC
64 AAAAGGGACCTTCGATTATTTGGAACAAATGAGAAATTGCAACCCAACACGATAGGGCACAATCC
8612158 CGCG
129 CGCG
* *
8612162 AATTGCCAAATATCGAA
1 AATTGCTAAACATCGAA
8612179 TATCGCTTCC
Statistics
Matches: 126, Mismatches: 18, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
130 1 0.01
131 9 0.07
132 89 0.71
133 27 0.21
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (132 bp):
AATTGCTAAACATCGAACATTACCTTATTTTAGAGAGTTTTTAAGAAACATAAGGGAAATTCCAA
AAGGGACCTTCGATTATTTGGAACAAATGAGAAATTGCAACCCAACACGATAGGGCACAATCCCG
CG
Found at i:8612192 original size:132 final size:131
Alignment explanation
Indices: 8611905--8612224 Score: 319
Period size: 132 Copynumber: 2.4 Consensus size: 131
8611895 TCAAATTTCT
* * * ** * * *
8611905 AAACATCGAGCATTGCCTT-ATTTTTTAGAGTTTTTAAGAAACATGAGGGAAATTCCAAAGGGGA
1 AAACATCGAACATTACCTTCGTTTTAAAGAGTTTTTAA-AAACATAAGTGAAATT-CAAAAGGGA
** *
8611969 TGTTCGATTATTTGGAACCAACAGGAAATTGCAACCCAACACGATAGGGCACGATTCCCCGAATT
64 CCTTCGATTATTTGGAACCAACAGGAAATTGCAACCCAACACGATAGGGCACGAATCCCCGAATT
*
8612034 GCT
129 GCC
*
8612037 AAACATCGAACATTACCTTCGTTTTAGAGAGTTTTTAGAAAACATAAGTGAAATTCAAAAGGGAC
1 AAACATCGAACATTACCTTCGTTTTAAAGAGTTTTTA-AAAACATAAGTGAAATTCAAAAGGGAC
* * * *
8612102 CTTCGATTATTTTGAA-CAA-ATGAGAAATTGCCACCTAACACGTTAGGGCAC-AATCCCGCGAA
65 CTTCGATTATTTGGAACCAACA-G-GAAATTGCAACCCAACACGATAGGGCACGAATCCC-CGAA
8612164 TTGCC
127 TTGCC
* * * **
8612169 AAATATCGAATA-T-CGCTTCCGTTTTAAAGGGTTTTTAAAAGACATTGGTGAAATTC
1 AAACATCGAACATTAC-CTT-CGTTTTAAAGAGTTTTTAAAA-ACATAAGTGAAATTC
8612225 TAAATATGTA
Statistics
Matches: 158, Mismatches: 22, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
130 2 0.01
131 16 0.10
132 111 0.70
133 28 0.18
134 1 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (131 bp):
AAACATCGAACATTACCTTCGTTTTAAAGAGTTTTTAAAAACATAAGTGAAATTCAAAAGGGACC
TTCGATTATTTGGAACCAACAGGAAATTGCAACCCAACACGATAGGGCACGAATCCCCGAATTGC
C
Found at i:8613222 original size:24 final size:24
Alignment explanation
Indices: 8613171--8613413 Score: 335
Period size: 24 Copynumber: 10.0 Consensus size: 24
8613161 ACTTTATCAT
* *
8613171 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTG
* * *
8613196 ATAACTAGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
* *
8613220 ATAACTGGGGCATAAGCTCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTG
8613244 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
8613268 ATAACTGGGGCATAAACCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
8613292 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
8613316 ATAACTGGGGCATAAGCCCTTTTTTA
1 ATAACTGGGGCATAAGCCC--TTTTG
8613342 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
* *
8613366 ATAACTAGGGCATAAGGCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
*
8613390 ATAACTGGGGCAGAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
8613414 CACTTCCTTC
Statistics
Matches: 198, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
24 164 0.83
25 11 0.06
26 23 0.12
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:8613387 original size:98 final size:96
Alignment explanation
Indices: 8613190--8613413 Score: 349
Period size: 98 Copynumber: 2.3 Consensus size: 96
8613180 GGCCTAGCCT
* * *
8613190 CTTTTAATAACTAGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCTCTTTTAATAACTGGGGC
1 CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTAATAACTGGGGC
*
8613255 ATAAGCCCTTTTGATAACTGGGGCATAAACC
66 ATAAGCCCTTTTGATAACTAGGGCATAAACC
* *
8613286 CTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTTTAATAACTGGG
1 CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAG--CTCTTTTAATAACTGGG
**
8613351 GCATAAGCCCTTTTGATAACTAGGGCATAAGGC
64 GCATAAGCCCTTTTGATAACTAGGGCATAAACC
*
8613384 CTTTTGATAACTGGGGCAGAAGCCCTTTTG
1 CTTTTGATAACTGGGGCAAAAGCCCTTTTG
8613414 CACTTCCTTC
Statistics
Matches: 117, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 42 0.36
98 75 0.64
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (96 bp):
CTTTTGATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCTCTTTTAATAACTGGGGC
ATAAGCCCTTTTGATAACTAGGGCATAAACC
Found at i:8613487 original size:20 final size:20
Alignment explanation
Indices: 8613462--8613508 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
8613452 TTATGAATAC
*
8613462 ATCATGTGCATATCATACAT
1 ATCATGTCCATATCATACAT
8613482 ATCATGTCCATATCATACAT
1 ATCATGTCCATATCATACAT
*
8613502 AACATGT
1 ATCATGT
8613509 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (20 bp):
ATCATGTCCATATCATACAT
Found at i:8613587 original size:25 final size:25
Alignment explanation
Indices: 8613545--8613594 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
8613535 ATTTATAAAC
* * *
8613545 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
8613570 CCTAGGGGCAAAACGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
8613595 TATTATAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:8615066 original size:34 final size:34
Alignment explanation
Indices: 8615023--8615099 Score: 145
Period size: 34 Copynumber: 2.3 Consensus size: 34
8615013 AAGCTCCACA
8615023 TGCCACCTTTTTAGGAGCTTAGTGGCGCCACCCT
1 TGCCACCTTTTTAGGAGCTTAGTGGCGCCACCCT
*
8615057 TGCCACCTTTTTAGGAGCTTAGTGGCGTCACCCT
1 TGCCACCTTTTTAGGAGCTTAGTGGCGCCACCCT
8615091 TGCCACCTT
1 TGCCACCTT
8615100 ACTAAAGCTC
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 42 1.00
ACGTcount: A:0.14, C:0.32, G:0.22, T:0.31
Consensus pattern (34 bp):
TGCCACCTTTTTAGGAGCTTAGTGGCGCCACCCT
Found at i:8623642 original size:16 final size:16
Alignment explanation
Indices: 8623621--8623677 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
8623611 TTCTTATAAC
8623621 TTTTATAATTTTGAAT
1 TTTTATAATTTTGAAT
**
8623637 TTTTATTTTTTTGAAT
1 TTTTATAATTTTGAAT
*
8623653 ATTTTATCAATTTTAAAT
1 -TTTTAT-AATTTTGAAT
8623671 TATTTAT
1 T-TTTAT
8623678 TGATATAACA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 14 0.42
17 7 0.21
18 12 0.36
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (16 bp):
TTTTATAATTTTGAAT
Found at i:8624600 original size:28 final size:28
Alignment explanation
Indices: 8624563--8624659 Score: 131
Period size: 28 Copynumber: 3.4 Consensus size: 28
8624553 TACAGTAGTT
8624563 TCTGAAAAAAATAAATTAGAGAAGACGTA
1 TCTG-AAAAAATAAATTAGAGAAGACGTA
*
8624592 TCTGAAAAAATATATTAGAGAAGACGTA
1 TCTGAAAAAATAAATTAGAGAAGACGTA
* * * *
8624620 TCTGAAAAAATAATTTTGAGAAGATGTT
1 TCTGAAAAAATAAATTAGAGAAGACGTA
*
8624648 TCTGAACAAATA
1 TCTGAAAAAATA
8624660 GTGTCAAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
28 57 0.93
29 4 0.07
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.27
Consensus pattern (28 bp):
TCTGAAAAAATAAATTAGAGAAGACGTA
Found at i:8624756 original size:126 final size:126
Alignment explanation
Indices: 8624620--8625123 Score: 855
Period size: 126 Copynumber: 4.0 Consensus size: 126
8624610 AGAAGACGTA
*
8624620 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
* * * *
8624685 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACATGGAAGCTTTTTTTCTACAATAGTT
66 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
* * *
8624746 TCTGAAAAAATAATTTTGAGAAGATATTTCTGAACAAATAGTGTTAAAAACGCTTCAAGTAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
* * *
8624811 GCATTGTCAGCAAAAGTACTCAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTT
66 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
* * *
8624872 TCTAAAAAAATAATTTTGAAAAGATGTTTCTGAACAAATAGTGTCAACAACGCTTCAAGCAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
8624937 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
66 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
*
8624998 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGAT
1 TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
* *
8625063 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTAGACGCTCATTTTCTACAGTAGTT
66 GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
8625124 CTTATTTTGT
Statistics
Matches: 354, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 354 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (126 bp):
TCTGAAAAAATAATTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGAT
GCACTGTCAGCAAAAGTACTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTACAGTAGTT
Found at i:8626936 original size:46 final size:46
Alignment explanation
Indices: 8626876--8627235 Score: 445
Period size: 46 Copynumber: 7.8 Consensus size: 46
8626866 TTTGACATGA
* * ** *
8626876 TGCCATAGTGTCTTTCAAATATGGTCTTACTCATTTTC-TGTCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGTCACGT
** * * *
8626922 TGCCATGGTATCTTTCAACCATGGTCTTGTTTATTTCATGTTACAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * ** *
8626968 TGCCATGGTATCTTTCAACCATGGTCTTATTTA-TTCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* *
8627013 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
8627059 TGCCATAGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * *
8627105 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
* * * *
8627151 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
*
8627197 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
8627236 TTCAGAAAGC
Statistics
Matches: 282, Mismatches: 30, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
45 42 0.15
46 240 0.85
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGTCACGT
Found at i:8627108 original size:137 final size:138
Alignment explanation
Indices: 8626871--8627225 Score: 482
Period size: 137 Copynumber: 2.6 Consensus size: 138
8626861 TTATCTTTGA
* * ** *
8626871 CATGATGCCATAGTGTCTTTCAAATATGGTCTTACTCATTTTC-TGTCAGGTTGCCATGGTATCT
1 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACTC-TTTTCATGTCACGTTGCCATGGTATCT
* * ***
8626935 TTCAACCATGGTCTTGTTTATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTATTT
65 TTCAACCATGGTCTTATTTATTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACAC
* *
8627000 A-TTCCCGT
130 ATTTCACAT
* * *
8627008 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATAGTATCTT
1 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACTCTTTTCATGTCACGTTGCCATGGTATCTT
*
8627073 TCAACCATGGTCTTATTCT-TTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACAC
66 TCAACCATGGTCTTATT-TATTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACAC
*
8627137 ATTTCATAT
130 ATTTCACAT
* * * *
8627146 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTT
1 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACTCTTTTCATGTCACGTTGCCATGGTATCTT
8627211 TCAACCATGGTCTTA
66 TCAACCATGGTCTTA
8627226 CACATTTCAT
Statistics
Matches: 191, Mismatches: 24, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
136 5 0.03
137 108 0.57
138 78 0.41
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (138 bp):
CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACTCTTTTCATGTCACGTTGCCATGGTATCTT
TCAACCATGGTCTTATTTATTTCATGTCACATTGCCATGGTATCTTTCAACCATGGTCTTACACA
TTTCACAT
Found at i:8627112 original size:183 final size:184
Alignment explanation
Indices: 8626876--8627225 Score: 497
Period size: 183 Copynumber: 1.9 Consensus size: 184
8626866 TTTGACATGA
* * *
8626876 TGCCATAGTGTCTTTCAAATATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAAACATGGTCTTACTCATTTTCTGTCACGTTGCCATGGTATCTTTCAAC
**** * * *** *
8626941 CATGGTCTTGTTTATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTATTTA-TTCC
66 CATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
8627005 CGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
131 CATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
* *
8627059 TGCCATAGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGTTGCCATGGTATCTTTCAA
1 TGCCATAGTATCTTTCAAACATGGTCTTACTCATTTTC-TGTCACGTTGCCATGGTATCTTTCAA
** *
8627123 CCATGGTCTTACACATTTCATATCATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
*
8627188 ATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
130 ACATCATGTTGCCATGGTATCTTTCAACCATGGTCTTA
8627226 CACATTTCAT
Statistics
Matches: 145, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
182 5 0.03
183 102 0.70
184 38 0.26
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (184 bp):
TGCCATAGTATCTTTCAAACATGGTCTTACTCATTTTCTGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
CATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
Found at i:8630509 original size:13 final size:13
Alignment explanation
Indices: 8630487--8630519 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8630477 TGCAAGCCAT
*
8630487 TGGTAGAAATTGA
1 TGGTACAAATTGA
8630500 TGGTACAAATTGA
1 TGGTACAAATTGA
8630513 TGGTACA
1 TGGTACA
8630520 TTTATATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.30
Consensus pattern (13 bp):
TGGTACAAATTGA
Found at i:8632491 original size:30 final size:30
Alignment explanation
Indices: 8632457--8632536 Score: 97
Period size: 30 Copynumber: 2.7 Consensus size: 30
8632447 GATGACTGTG
8632457 TGGGCGCTGTTGATGGGCCTAGTGATTGTA
1 TGGGCGCTGTTGATGGGCCTAGTGATTGTA
* * * *
8632487 TGGGCACTGTTGATGGGGCTGGTGATTGTG
1 TGGGCGCTGTTGATGGGCCTAGTGATTGTA
* * *
8632517 TGAGCGCTGTTAATGAGCCT
1 TGGGCGCTGTTGATGGGCCT
8632537 GTGTCGTCAT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.14, C:0.14, G:0.40, T:0.33
Consensus pattern (30 bp):
TGGGCGCTGTTGATGGGCCTAGTGATTGTA
Found at i:8633048 original size:7 final size:7
Alignment explanation
Indices: 8633036--8633065 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
8633026 TATACATAAC
8633036 ACTAAAT
1 ACTAAAT
8633043 ACTAAAT
1 ACTAAAT
8633050 ACTAAAT
1 ACTAAAT
8633057 ACTAAAT
1 ACTAAAT
8633064 AC
1 AC
8633066 GAATCAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (7 bp):
ACTAAAT
Found at i:8634041 original size:24 final size:23
Alignment explanation
Indices: 8633991--8634043 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
8633981 AACTTTTATA
*
8633991 AAAATTATAAAATAAAAATTAATT
1 AAAATTACAAAATAAAAA-TAATT
8634015 AAAATTACATAAATAAAAA-AATCT
1 AAAATTACA-AAATAAAAATAAT-T
8634039 AAAAT
1 AAAAT
8634044 AATATTGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 3 0.12
24 14 0.54
25 9 0.35
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (23 bp):
AAAATTACAAAATAAAAATAATT
Found at i:8639075 original size:6 final size:6
Alignment explanation
Indices: 8639051--8639098 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
8639041 TCAAAAGAGG
* *
8639051 AAAAT- AAAAT- AAAAGA AAAATA AAAATA AAAATA AACATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
8639097 AA
1 AA
8639099 TAGACTCAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
5 9 0.24
6 29 0.76
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:8650988 original size:32 final size:30
Alignment explanation
Indices: 8650948--8651010 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 30
8650938 AATCAATTAC
8650948 TTTTAAAAGATTGAT-AATAAAATTAAACTAT
1 TTTTAAAAG-TTGATGAATAAAATTAAA-TAT
* *
8650979 TTTTAAAAAGTTGATGATTAAATTTAAATAT
1 TTTT-AAAAGTTGATGAATAAAATTAAATAT
8651010 T
1 T
8651011 AAAAAATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.43
Consensus pattern (30 bp):
TTTTAAAAGTTGATGAATAAAATTAAATAT
Found at i:8650993 original size:31 final size:31
Alignment explanation
Indices: 8650948--8651010 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 31
8650938 AATCAATTAC
8650948 TTTTAAAAGATTGAT-AATAAAATTAAACTAT
1 TTTTAAAAGATTGATGAATAAAATTAAA-TAT
* *
8650979 TTTTAAAA-AGTTGATGATTAAATTTAAATAT
1 TTTTAAAAGA-TTGATGAATAAAATTAAATAT
8651010 T
1 T
8651011 AAAAAATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 1 0.04
31 17 0.61
32 10 0.36
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.43
Consensus pattern (31 bp):
TTTTAAAAGATTGATGAATAAAATTAAATAT
Found at i:8653574 original size:134 final size:132
Alignment explanation
Indices: 8653259--8653574 Score: 370
Period size: 134 Copynumber: 2.4 Consensus size: 132
8653249 GAGAAACACC
* * * * * * * * *
8653259 ACCCAGCACGATAGGGCATGATTCC-CGAATTATCAAACACCGAGTATTGCCTTCGTTTTAGAGG
1 ACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGCCTTCGTTTAAGAGG
* * ** * * *
8653323 ATTTTTTGAAGACATGAGTGAAATTTTGGAGGGATATTTGATTATTTGAAGCAATCGAGGAATTG
66 ATTTTTTAAAGACATGAGTGAAATTCTAAAGGGACATTCGATTATTTGAAGCAAACGAGGAATTG
8653388 CA
131 CA
* * *
8653390 ACCCAACACGTTAGGGCACGATT-CAGCGAATTGCCAAATATCGCACATCGCCTTCGTTTAAG-G
1 ACCCAACACGTTAGGGCACGATTCCA-CGAATTACCAAATATCGAATATCGCCTTCGTTTAAGAG
* *
8653453 GATTTTTTTTTAAAGACATGGGTGAAATTCTAAAGGGACCTTCGATTACTTTG-AGCAAACGAGG
65 GA---TTTTTTAAAGACATGAGTGAAATTCTAAAGGGACATTCGATTA-TTTGAAGCAAACGAGG
8653517 AATTGCA
126 AATTGCA
8653524 ACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGC
1 ACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGC
8653575 ATTTGTTTTA
Statistics
Matches: 154, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
130 1 0.01
131 23 0.15
132 27 0.18
134 97 0.63
135 6 0.04
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (132 bp):
ACCCAACACGTTAGGGCACGATTCCACGAATTACCAAATATCGAATATCGCCTTCGTTTAAGAGG
ATTTTTTAAAGACATGAGTGAAATTCTAAAGGGACATTCGATTATTTGAAGCAAACGAGGAATTG
CA
Found at i:8660089 original size:14 final size:15
Alignment explanation
Indices: 8660072--8660104 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8660062 TAGTAATATA
8660072 ATAATCTAAT-TAAT
1 ATAATCTAATGTAAT
8660086 ATAA-CTAATGTAAT
1 ATAATCTAATGTAAT
8660100 ATAAT
1 ATAAT
8660105 TAACTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (15 bp):
ATAATCTAATGTAAT
Found at i:8667142 original size:34 final size:35
Alignment explanation
Indices: 8667082--8667149 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 35
8667072 GACTATAAGT
8667082 AGTTTTAGGTATTGTGAAAAAAAAAAGATATGATC
1 AGTTTTAGGTATTGTGAAAAAAAAAAGATATGATC
8667117 AGTTTTAGGTATTGTG-AAAAAAAAAGATATGAT
1 AGTTTTAGGTATTGTGAAAAAAAAAAGATATGAT
8667150 TAGAACTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 17 0.52
35 16 0.48
ACGTcount: A:0.46, C:0.01, G:0.21, T:0.32
Consensus pattern (35 bp):
AGTTTTAGGTATTGTGAAAAAAAAAAGATATGATC
Found at i:8668385 original size:59 final size:58
Alignment explanation
Indices: 8668321--8668437 Score: 180
Period size: 59 Copynumber: 2.0 Consensus size: 58
8668311 TATGTACTAA
* * *
8668321 AAGTTAGATTATAATTTATCTCTTTTATTTAAAAAATAGATAAATTAATCCATATACAT
1 AAGTTAAATTATAATTTATCTCTTTCATTAAAAAAATAGAT-AATTAATCCATATACAT
* *
8668380 AAGTTAAATTATAATTTGTCTCTTTCATTAAAAAAATAGATAATTAATCTATATACAT
1 AAGTTAAATTATAATTTATCTCTTTCATTAAAAAAATAGATAATTAATCCATATACAT
8668438 TAGATCAAAA
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 16 0.30
59 37 0.70
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (58 bp):
AAGTTAAATTATAATTTATCTCTTTCATTAAAAAAATAGATAATTAATCCATATACAT
Found at i:8670797 original size:31 final size:30
Alignment explanation
Indices: 8670762--8670832 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 30
8670752 TTTAATTTAA
*
8670762 TTAATTTTAGTTTTTATATTTTTTGAATTAG
1 TTAATTTTAGTCTTTATATTTTTTGAATT-G
*
8670793 TTAATTTTAGTCTTTATATTTTTTGGATTG
1 TTAATTTTAGTCTTTATATTTTTTGAATTG
8670823 TTCAATTTTA
1 TT-AATTTTA
8670833 TTCATGATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 3 0.08
31 34 0.92
ACGTcount: A:0.24, C:0.03, G:0.10, T:0.63
Consensus pattern (30 bp):
TTAATTTTAGTCTTTATATTTTTTGAATTG
Found at i:8671898 original size:90 final size:90
Alignment explanation
Indices: 8671744--8671970 Score: 219
Period size: 90 Copynumber: 2.5 Consensus size: 90
8671734 GACTTGAATT
* * * * * * **
8671744 TTTTTATTCAAGTTAATCCCTAAATGTGACAACTGTTCTCACATT-GAGGCTTGAACTAGTCAAT
1 TTTTTGTTCAAGTTAAT-CCTTAATTTGGCAATTGTTCCCACATTGGAGGC-TGAACTAACCAAT
8671808 TGTTTC-CATATTAAAGTCTGAAC-TTC
64 TG-TTCACATATTAAAGTCTGAACTTTC
8671834 TTTTTGTTCAAGTTAATCTCTTAATTTGGCAATTGTTCCCACATTGGAGTGC-GAACTAACCAAT
1 TTTTTGTTCAAGTTAATC-CTTAATTTGGCAATTGTTCCCACATTGGAG-GCTGAACTAACCAAT
** *
8671898 TGTTCACATATTAGGGTTTGAACTTTC
64 TGTTCACATATTAAAGTCTGAACTTTC
* ** * * *
8671925 TTTTGGCCCAACTTAGTCCTTGAATTAGGCAATTGTTCCCACATTG
1 TTTTTGTTCAAGTTAATCCTT-AATTTGGCAATTGTTCCCACATTG
8671971 AGATTTGAGC
Statistics
Matches: 114, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
89 4 0.04
90 66 0.58
91 42 0.37
92 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.39
Consensus pattern (90 bp):
TTTTTGTTCAAGTTAATCCTTAATTTGGCAATTGTTCCCACATTGGAGGCTGAACTAACCAATTG
TTCACATATTAAAGTCTGAACTTTC
Found at i:8673286 original size:23 final size:23
Alignment explanation
Indices: 8673236--8673279 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8673226 TCTAATAAAT
* *
8673236 AAGAGAAAACTTGAGGTTTTTAC
1 AAGAAAAAACTTGAGATTTTTAC
8673259 AAGAAAAAACTTGA-ATTTTTA
1 AAGAAAAAACTTGAGATTTTTA
8673280 TAGAGAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.32
Consensus pattern (23 bp):
AAGAAAAAACTTGAGATTTTTAC
Found at i:8680188 original size:46 final size:46
Alignment explanation
Indices: 8680121--8680485 Score: 446
Period size: 46 Copynumber: 8.0 Consensus size: 46
8680111 GCTTTCTGAA
* *
8680121 ATGAAATGTATAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
8680167 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
8680213 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
8680259 ATGAAACATGTAAGACCATGGTTGAAAGATACCATGGCAATAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
8680305 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* ** ** * *
8680351 A-GGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**** *
8680396 ATGAAATAAACAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * *
8680442 A-GAAAATGAGTAAAACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
8680486 TCAAAGATAA
Statistics
Matches: 276, Mismatches: 41, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
45 39 0.14
46 237 0.86
ACGTcount: A:0.42, C:0.14, G:0.22, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:8680425 original size:137 final size:138
Alignment explanation
Indices: 8680132--8680503 Score: 460
Period size: 137 Copynumber: 2.7 Consensus size: 138
8680122 TGAAATGTAT
* *
8680132 AAGACCATGGTTGAAAGACACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* * * ** * *
8680197 ACCATGGCAATAGGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATG
66 ACCATGGCAACATGACATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACATG
***
8680262 AAACATGT
131 AAACAAAC
* *
8680270 AAGACCATGGTTGAAAGATACCATGGCAATAGGATATAAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
** **
8680335 ACCATGGCAACATGACA-GGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAACATG
66 ACCATGGCAACATGACATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACATG
*
8680399 AAATAAAC
131 AAACAAAC
* * * * * *
8680407 AAGACCATGGTTGAAAGATACCATGGCAACCTGATAGAAAATGAGTAAAACCATAGTTGAAAGAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
* * * * *
8680472 ACTATGGCATCATGTCA-AAGATAAATAAGACC
66 ACCATGGCAACATGACATAAAATGAATAAGACC
8680504 GTGGATGGGA
Statistics
Matches: 200, Mismatches: 34, Indels: 1
0.85 0.14 0.00
Matches are distributed among these distances:
137 125 0.62
138 75 0.38
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (138 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAT
ACCATGGCAACATGACATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATAACATG
AAACAAAC
Found at i:8680787 original size:16 final size:17
Alignment explanation
Indices: 8680766--8680798 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8680756 ATGATGGAGC
8680766 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
8680782 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
8680799 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:8684291 original size:16 final size:17
Alignment explanation
Indices: 8684271--8684321 Score: 61
Period size: 16 Copynumber: 3.1 Consensus size: 17
8684261 TATATGAATC
8684271 AATTTCTATATATA-TA
1 AATTTCTATATATATTA
* *
8684287 TATTTATATATATATTA
1 AATTTCTATATATATTA
*
8684304 AATTTC-ATATAGATTA
1 AATTTCTATATATATTA
8684320 AA
1 AA
8684322 ATAATAATAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
16 23 0.79
17 6 0.21
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (17 bp):
AATTTCTATATATATTA
Found at i:8684942 original size:17 final size:17
Alignment explanation
Indices: 8684920--8684953 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8684910 ATTAGTTCTA
8684920 ATCAAATTCTAATTAGC
1 ATCAAATTCTAATTAGC
8684937 ATCAAATTCTAATTAGC
1 ATCAAATTCTAATTAGC
8684954 CCATCATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (17 bp):
ATCAAATTCTAATTAGC
Found at i:8688344 original size:20 final size:20
Alignment explanation
Indices: 8688301--8688349 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
8688291 AGAAGCCAAT
* *
8688301 AAATCAATTTGATTAAAATT
1 AAATCAAATTGATTAAAATC
**
8688321 AAATCAAATTGATTGGAATC
1 AAATCAAATTGATTAAAATC
*
8688341 AAATAAAAT
1 AAATCAAAT
8688350 AAGATAAATA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.53, C:0.06, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATC
Found at i:8689133 original size:14 final size:15
Alignment explanation
Indices: 8689102--8689133 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8689092 TTTTTTTTCT
8689102 TTTTAATTTTAGTTA
1 TTTTAATTTTAGTTA
8689117 TTTTAATTTTA-TTA
1 TTTTAATTTTAGTTA
8689131 TTT
1 TTT
8689134 GATAAGAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (15 bp):
TTTTAATTTTAGTTA
Found at i:8694979 original size:34 final size:34
Alignment explanation
Indices: 8694953--8695021 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
8694943 ATATATATAG
8694953 AATAACATAGAATTAATATTGCTTATAAAATAAA
1 AATAACATAGAATTAATATTGCTTATAAAATAAA
**
8694987 AATAATTTAGAATTAATATTGCTTATAAAATAAA
1 AATAACATAGAATTAATATTGCTTATAAAATAAA
8695021 A
1 A
8695022 CTAATTTTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (34 bp):
AATAACATAGAATTAATATTGCTTATAAAATAAA
Found at i:8695027 original size:34 final size:34
Alignment explanation
Indices: 8694960--8695028 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
8694950 TAGAATAACA
8694960 TAGAATTAATATTGCTTATAAAATAAAAATAATT
1 TAGAATTAATATTGCTTATAAAATAAAAATAATT
*
8694994 TAGAATTAATATTGCTTATAAAATAAAACTAATT
1 TAGAATTAATATTGCTTATAAAATAAAAATAATT
8695028 T
1 T
8695029 TAATATAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (34 bp):
TAGAATTAATATTGCTTATAAAATAAAAATAATT
Found at i:8696074 original size:13 final size:13
Alignment explanation
Indices: 8696056--8696080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8696046 TTTATAGCCA
8696056 AAATAAATAAAAT
1 AAATAAATAAAAT
8696069 AAATAAATAAAA
1 AAATAAATAAAA
8696081 AGAAATCCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:8698443 original size:45 final size:45
Alignment explanation
Indices: 8698392--8698480 Score: 124
Period size: 45 Copynumber: 2.0 Consensus size: 45
8698382 TCTCGACTCA
** ** *
8698392 TCTTCTCAGTTGAGCTATTTACTGCCATTGCCATTTCTTTCTTCC
1 TCTTCTCAACTGAGCTATTTACTGCCAGCGCCATCTCTTTCTTCC
*
8698437 TCTTCTCAACTGAGCTATTTACTGTCAGCGCCATCTCTTTCTTC
1 TCTTCTCAACTGAGCTATTTACTGCCAGCGCCATCTCTTTCTTC
8698481 ATTTTATCAG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.15, C:0.30, G:0.11, T:0.44
Consensus pattern (45 bp):
TCTTCTCAACTGAGCTATTTACTGCCAGCGCCATCTCTTTCTTCC
Found at i:8706994 original size:13 final size:13
Alignment explanation
Indices: 8706957--8707021 Score: 62
Period size: 13 Copynumber: 5.1 Consensus size: 13
8706947 TTTAAATCAA
*
8706957 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
* *
8706970 -TTTTTAAAAAGC
1 ACTTTTCAAAAGC
*
8706982 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
8706995 ACTTTTTC-ACAGC
1 AC-TTTTCAAAAGC
8707008 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
8707021 A
1 A
8707022 TTGCCAAACT
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
12 15 0.37
13 22 0.54
14 4 0.10
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.34
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:8714548 original size:46 final size:46
Alignment explanation
Indices: 8714481--8714568 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
8714471 GACTGAGTCT
* *
8714481 TAGTTTAGATGGATGGTGTAGATTATGTATTTAGATTCAAAAGCAG
1 TAGTTTAGATGAATAGTGTAGATTATGTATTTAGATTCAAAAGCAG
*
8714527 TAGTTTAGATGAATAGTGTAGATTATGTATTTGGATTCAAAA
1 TAGTTTAGATGAATAGTGTAGATTATGTATTTAGATTCAAAA
8714569 ATAATTATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.39
Consensus pattern (46 bp):
TAGTTTAGATGAATAGTGTAGATTATGTATTTAGATTCAAAAGCAG
Found at i:8717288 original size:29 final size:29
Alignment explanation
Indices: 8717250--8717306 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
8717240 TTGTAATAAA
*
8717250 TATATATTTATTATGTAA-AAATAATTTTT
1 TATAGATTTATTATGTAATAAAT-ATTTTT
8717279 TATAGATTTATTATGTAATAAATATTTT
1 TATAGATTTATTATGTAATAAATATTTT
8717307 ATAATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.54
Consensus pattern (29 bp):
TATAGATTTATTATGTAATAAATATTTTT
Found at i:8717317 original size:29 final size:28
Alignment explanation
Indices: 8717251--8717319 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
8717241 TGTAATAAAT
*
8717251 ATATATTTATTATGTAAAAATAATTTTTT
1 ATAT-TTTATTATGTAAAAATAATTTTTA
*
8717280 ATAGATTTATTATGTAATAAAT-ATTTTATA
1 ATA-TTTTATTATGTAA-AAATAATTTT-TA
8717310 ATATTTTATT
1 ATATTTTATT
8717320 TACCAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
29 26 0.76
30 8 0.24
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.55
Consensus pattern (28 bp):
ATATTTTATTATGTAAAAATAATTTTTA
Found at i:8729358 original size:6 final size:6
Alignment explanation
Indices: 8729347--8729384 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
8729337 TTCGGGTGAA
8729347 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAG-G GAA
1 GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAAGAG GAA
8729385 CCAAAAGGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.12
6 28 0.88
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
GAAGAG
Done.