Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 284 of 295
Found at i:90090086 original size:17 final size:18
Alignment explanation
Indices: 90090033--90090158 Score: 170
Period size: 19 Copynumber: 6.9 Consensus size: 18
90090023 AATCATATCT
90090033 TCTAAGATTGTATATCATA
1 TCTAAGATTG-ATATCATA
90090052 TCTAAGATTGCA-ATCATA
1 TCTAAGATTG-ATATCATA
90090070 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
90090087 TCTAAGATTG-TAATCATA
1 TCTAAGATTGAT-ATCATA
90090105 TCTAAGATTG-TATCATA
1 TCTAAGATTGATATCATA
*
90090122 TCTAAGATTGCATATCACA
1 TCTAAGATTG-ATATCATA
90090141 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
90090159 TGAAGATTAT
Statistics
Matches: 100, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
17 33 0.33
18 33 0.33
19 34 0.34
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGATATCATA
Found at i:90090091 original size:35 final size:35
Alignment explanation
Indices: 90090033--90090150 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
90090023 AATCATATCT
90090033 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
90090070 TCTAAGATTGTATCATATCTAAGATTGTAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
90090105 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
90090141 TCTAAGATTG
1 TCTAAGATTG
90090151 CATATCATTG
Statistics
Matches: 77, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
35 52 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:90090166 original size:17 final size:18
Alignment explanation
Indices: 90090033--90090155 Score: 87
Period size: 17 Copynumber: 6.8 Consensus size: 18
90090023 AATCATATCT
* *
90090033 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
90090052 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
90090070 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
* *
90090087 TCTAAGATTGTA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
90090105 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
90090122 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
90090141 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
90090156 CATTGAAGAT
Statistics
Matches: 96, Mismatches: 2, Indels: 12
0.87 0.02 0.11
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 32 0.33
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.38
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:90090703 original size:11 final size:11
Alignment explanation
Indices: 90090684--90090731 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
90090674 ATATTTCTAC
* *
90090684 TATTTTTTTGT
1 TATTGTTTTAT
*
90090695 TATTGTTTTAA
1 TATTGTTTTAT
* *
90090706 TATTGTATAAT
1 TATTGTTTTAT
90090717 TATTGTTTTAT
1 TATTGTTTTAT
90090728 TATT
1 TATT
90090732 AATTCTATTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (11 bp):
TATTGTTTTAT
Found at i:90092756 original size:32 final size:30
Alignment explanation
Indices: 90092687--90092756 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 30
90092677 TATAGTTTAG
90092687 GATAAAAAATTATTAAAATTATATATTAAT
1 GATAAAAAATTATTAAAATTATATATTAAT
* *
90092717 GATATAAAAAATATTAAAATTTTATTATATAATT
1 GATA-AAAAATTATTAAAATTATA-TAT-TAA-T
90092751 GATAAA
1 GATAAA
90092757 GGACTATAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 4 0.12
31 17 0.50
32 3 0.09
33 5 0.15
34 5 0.15
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (30 bp):
GATAAAAAATTATTAAAATTATATATTAAT
Found at i:90094473 original size:17 final size:17
Alignment explanation
Indices: 90094438--90094493 Score: 78
Period size: 18 Copynumber: 3.2 Consensus size: 17
90094428 TTAAAATTTT
*
90094438 AAATTTTAAAAATAAAA
1 AAATTTTAAAAATATAA
90094455 AATATTTTAAAAAT-TAA
1 AA-ATTTTAAAAATATAA
90094472 AAATTATTAAAAATATAA
1 AAATT-TTAAAAATATAA
90094490 AAAT
1 AAAT
90094494 AAATGTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
16 3 0.09
17 14 0.40
18 18 0.51
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
AAATTTTAAAAATATAA
Found at i:90097640 original size:13 final size:13
Alignment explanation
Indices: 90097622--90097649 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
90097612 AATCAGGGCA
90097622 TAGAGGAAAAAGG
1 TAGAGGAAAAAGG
90097635 TAGAGGAAAAAGG
1 TAGAGGAAAAAGG
90097648 TA
1 TA
90097650 AAGAGTTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.36, T:0.11
Consensus pattern (13 bp):
TAGAGGAAAAAGG
Found at i:90100366 original size:17 final size:17
Alignment explanation
Indices: 90100344--90100377 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
90100334 CATTCATGCT
90100344 TGTTTAATGGAGAATTA
1 TGTTTAATGGAGAATTA
90100361 TGTTTAATGGAGAATTA
1 TGTTTAATGGAGAATTA
90100378 ATAATCAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.24, T:0.41
Consensus pattern (17 bp):
TGTTTAATGGAGAATTA
Found at i:90105758 original size:17 final size:19
Alignment explanation
Indices: 90105724--90105759 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
90105714 GAATTTAAGG
*
90105724 TTAGTATATATGATTTTTT
1 TTAGCATATATGATTTTTT
90105743 TTAGCATATAT-ATTTTT
1 TTAGCATATATGATTTTT
90105760 GAAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.61
Consensus pattern (19 bp):
TTAGCATATATGATTTTTT
Found at i:90109329 original size:70 final size:70
Alignment explanation
Indices: 90109216--90109353 Score: 204
Period size: 70 Copynumber: 2.0 Consensus size: 70
90109206 ACTAATTTTG
* *
90109216 TAATTTTGTAATCAGAAAACTCGATACTATATATATATTAATTAAAAGAGAAATGAATGTATGAA
1 TAATTTTGTAATCAGAAAACTCGATACTAGATATATATTAATTAAAAGAGAAAGGAATGTATGAA
90109281 ACTGT
66 ACTGT
* * * * * *
90109286 TAATTTTGTAATTAGAGAATTCGATAGTAGATATCTATTAATTAAAAGAGAAAGGATTGTATGAA
1 TAATTTTGTAATCAGAAAACTCGATACTAGATATATATTAATTAAAAGAGAAAGGAATGTATGAA
90109351 ACT
66 ACT
90109354 ATGATTCCAC
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
70 60 1.00
ACGTcount: A:0.44, C:0.06, G:0.15, T:0.35
Consensus pattern (70 bp):
TAATTTTGTAATCAGAAAACTCGATACTAGATATATATTAATTAAAAGAGAAAGGAATGTATGAA
ACTGT
Found at i:90118136 original size:15 final size:15
Alignment explanation
Indices: 90118101--90118143 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
90118091 TCTATATATC
*
90118101 ATTATATTAAATTATT
1 ATTATATT-ATTTATT
* *
90118117 TTTATCTTATTTATT
1 ATTATATTATTTATT
90118132 ATTATATTATTT
1 ATTATATTATTT
90118144 TTAAAATATT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTATATTATTTATT
Found at i:90118153 original size:26 final size:26
Alignment explanation
Indices: 90118105--90118154 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
90118095 TATATCATTA
***
90118105 TATTAAATTATTTTTATCTTATTTAT
1 TATTAAATTATTTTTAAAATATTTAT
*
90118131 TATTATATTATTTTTAAAATATTT
1 TATTAAATTATTTTTAAAATATTT
90118155 TATATATCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (26 bp):
TATTAAATTATTTTTAAAATATTTAT
Found at i:90119897 original size:11 final size:12
Alignment explanation
Indices: 90119871--90119903 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
90119861 ATAGTATAAT
*
90119871 AAAAAGGAAAAG
1 AAAAAAGAAAAG
90119883 AAAAAAGAAAA-
1 AAAAAAGAAAAG
90119894 AAAAAAGAAA
1 AAAAAAGAAA
90119904 TTTTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:90120509 original size:21 final size:22
Alignment explanation
Indices: 90120463--90120525 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 22
90120453 ATTTTCATTA
*
90120463 CTTTATTAT-TATTTATATATG
1 CTTTATTATATATGTATATATG
*
90120484 TTTTATTATATATGTATATAT-
1 CTTTATTATATATGTATATATG
* *
90120505 CTTTAATATATATGTACATAT
1 CTTTATTATATATGTATATAT
90120526 TTATGTAGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
21 26 0.72
22 10 0.28
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.57
Consensus pattern (22 bp):
CTTTATTATATATGTATATATG
Found at i:90120623 original size:26 final size:28
Alignment explanation
Indices: 90120582--90120642 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 28
90120572 TATTATGTAA
*
90120582 ATATTTTAATACTATGTTATGA-ATATAT
1 ATATTTTAATACTATGTTAT-ATACATAT
90120610 ATATTTT-ATA-TATGTTATATACATAT
1 ATATTTTAATACTATGTTATATACATAT
90120636 ATATTTT
1 ATATTTT
90120643 TTTAATATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
25 1 0.03
26 20 0.65
27 3 0.10
28 7 0.23
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (28 bp):
ATATTTTAATACTATGTTATATACATAT
Found at i:90120653 original size:26 final size:28
Alignment explanation
Indices: 90120604--90120655 Score: 72
Period size: 26 Copynumber: 1.9 Consensus size: 28
90120594 TATGTTATGA
*
90120604 ATATATATATTTTATATATGTTATATAC
1 ATATATATATTTTATATATATTATATAC
*
90120632 ATATATAT-TTTTTTA-ATATTATAT
1 ATATATATATTTTATATATATTATAT
90120656 TTTTTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.36
27 6 0.27
28 8 0.36
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (28 bp):
ATATATATATTTTATATATATTATATAC
Found at i:90120656 original size:16 final size:17
Alignment explanation
Indices: 90120635--90120670 Score: 65
Period size: 16 Copynumber: 2.2 Consensus size: 17
90120625 TATATACATA
90120635 TATATTTTTTTA-ATAT
1 TATATTTTTTTATATAT
90120651 TATATTTTTTTATATAT
1 TATATTTTTTTATATAT
90120668 TAT
1 TAT
90120671 TATGTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTTTTTATATAT
Found at i:90120694 original size:22 final size:22
Alignment explanation
Indices: 90120658--90120774 Score: 80
Period size: 23 Copynumber: 5.1 Consensus size: 22
90120648 TATTATATTT
*
90120658 TTTTATATATTATTATGTATATA
1 TTTTA-ATATCATTATGTATATA
90120681 TTTTAATATCATTA-GTTATATA
1 TTTTAATATCATTATG-TATATA
*
90120703 TTTTTATACTAT-TTTATGTATATA
1 -TTTTA-A-TATCATTATGTATATA
* *
90120727 TTTCTAATATTATATAT-TAAATA
1 TTT-TAATATCAT-TATGTATATA
* *
90120750 TTTCTAATACCATTAT-TATTTA
1 TTT-TAATATCATTATGTATATA
90120772 TTT
1 TTT
90120775 ATATATATAC
Statistics
Matches: 78, Mismatches: 8, Indels: 17
0.76 0.08 0.17
Matches are distributed among these distances:
21 1 0.01
22 27 0.35
23 31 0.40
24 15 0.19
25 4 0.05
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (22 bp):
TTTTAATATCATTATGTATATA
Found at i:90120901 original size:26 final size:24
Alignment explanation
Indices: 90120854--90120942 Score: 85
Period size: 24 Copynumber: 3.7 Consensus size: 24
90120844 TATATATATC
*
90120854 ATATATGTTTTATA-TATATTATGT
1 ATATAT-TTTTATATTATTTTATGT
* *
90120878 ATTTATTTTAATATTATTAGTTA--T
1 ATATATTTTTATATTATT--TTATGT
* *
90120902 ATATATTTTTATACTATTTCATGT
1 ATATATTTTTATATTATTTTATGT
90120926 ATATATTTTTATATTAT
1 ATATATTTTTATATTAT
90120943 CCTTATTATT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
22 2 0.04
23 6 0.12
24 41 0.79
26 3 0.06
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (24 bp):
ATATATTTTTATATTATTTTATGT
Found at i:90121114 original size:26 final size:25
Alignment explanation
Indices: 90121070--90121147 Score: 77
Period size: 26 Copynumber: 3.1 Consensus size: 25
90121060 CTAATATGTA
* *
90121070 TATACTATGTAAATA-TTTTAATAC
1 TATATTATGTACATATTTTTAATAC
** **
90121094 TATATTATGTATGTATTTTTTAACGC
1 TATATTATGTACATA-TTTTTAATAC
*
90121120 CATATTATGTACATATTTTTAATAC
1 TATATTATGTACATATTTTTAATAC
90121145 TAT
1 TAT
90121148 GTATATACTT
Statistics
Matches: 41, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
24 12 0.29
25 10 0.24
26 19 0.46
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (25 bp):
TATATTATGTACATATTTTTAATAC
Found at i:90121126 original size:70 final size:73
Alignment explanation
Indices: 90121055--90121185 Score: 166
Period size: 73 Copynumber: 1.9 Consensus size: 73
90121045 ACATTATTAT
*
90121055 TATT-TCTA-ATATGTAT-ATACTATGTAAATA-TTT-TAATACTA-TATTATGTATGTATTTTT
1 TATTATCTACATATGTATAATACTATGTAAATACTTTGTAATACTATTATTATGTATATATTTTT
90121114 TAACGCCA
66 TAACGCCA
* * * * *
90121122 TATTATGTACATATTTTTAATACTATGTATATACTTTGTAATACTATTATTATGTTTATATTTT
1 TATTATCTACATATGTATAATACTATGTAAATACTTTGTAATACTATTATTATGTATATATTTT
90121186 AATATATGCA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
67 4 0.08
68 3 0.06
69 6 0.12
70 13 0.25
71 3 0.06
72 8 0.15
73 15 0.29
ACGTcount: A:0.33, C:0.08, G:0.07, T:0.53
Consensus pattern (73 bp):
TATTATCTACATATGTATAATACTATGTAAATACTTTGTAATACTATTATTATGTATATATTTTT
TAACGCCA
Found at i:90121150 original size:20 final size:21
Alignment explanation
Indices: 90121125--90121168 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
90121115 AACGCCATAT
*
90121125 TATGTACATA-TTTTTAATAC
1 TATGTACATACTTTGTAATAC
*
90121145 TATGTATATACTTTGTAATAC
1 TATGTACATACTTTGTAATAC
90121166 TAT
1 TAT
90121169 TATTATGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (21 bp):
TATGTACATACTTTGTAATAC
Found at i:90123242 original size:16 final size:18
Alignment explanation
Indices: 90123215--90123248 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
90123205 TTAAAATTGG
90123215 ATTGAGAAAATT-ATTTA
1 ATTGAGAAAATTAATTTA
90123232 ATTGA-AAAATTAATTTA
1 ATTGAGAAAATTAATTTA
90123249 TCTAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
ATTGAGAAAATTAATTTA
Found at i:90123254 original size:21 final size:21
Alignment explanation
Indices: 90123225--90123268 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
90123215 ATTGAGAAAA
*
90123225 TTATTTAATTGAAA-AATTAAT
1 TTATCTAATT-AAACAATTAAT
90123246 TTATCTAATTAAATCAATTAAT
1 TTATCTAATTAAA-CAATTAAT
90123268 T
1 T
90123269 AAATAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 9 0.45
22 8 0.40
ACGTcount: A:0.45, C:0.05, G:0.02, T:0.48
Consensus pattern (21 bp):
TTATCTAATTAAACAATTAAT
Found at i:90135024 original size:38 final size:38
Alignment explanation
Indices: 90134973--90135050 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
90134963 AAAACTCCAC
90134973 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
1 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
90135011 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
1 TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
90135049 TT
1 TT
90135051 AATTGAGTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.54
Consensus pattern (38 bp):
TTTATCAGTTTTCACCCACATTCTTAGTATTTTTATTG
Found at i:90143171 original size:14 final size:15
Alignment explanation
Indices: 90143144--90143172 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
90143134 TTGCGTAACC
90143144 TAATTTATATTTTAA
1 TAATTTATATTTTAA
90143159 TAATTTA-ATTTTAA
1 TAATTTATATTTTAA
90143173 AAAATTACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TAATTTATATTTTAA
Found at i:90148479 original size:13 final size:14
Alignment explanation
Indices: 90148463--90148498 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
90148453 CAATCTCATA
90148463 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
90148476 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
90148489 TCTC-ATTTCA
1 TCTCAATTTCA
90148499 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:90148488 original size:18 final size:19
Alignment explanation
Indices: 90148450--90148490 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
90148440 TGGTTCATGT
90148450 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
90148469 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
90148487 TTTC
1 TTTC
90148491 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:90148639 original size:24 final size:24
Alignment explanation
Indices: 90148593--90148659 Score: 109
Period size: 24 Copynumber: 2.8 Consensus size: 24
90148583 GTGGATTCCT
* *
90148593 CCCAAACACA-CCAGAATACCCAA
1 CCCAAACACACCCGGAATATCCAA
90148616 CCCAAACACACCCGGAATATCCAA
1 CCCAAACACACCCGGAATATCCAA
90148640 CCCAAACACACCCGGAATAT
1 CCCAAACACACCCGGAATAT
90148660 TATAAATCCT
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 10 0.24
24 31 0.76
ACGTcount: A:0.43, C:0.42, G:0.07, T:0.07
Consensus pattern (24 bp):
CCCAAACACACCCGGAATATCCAA
Found at i:90149172 original size:15 final size:15
Alignment explanation
Indices: 90149152--90149198 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
90149142 TAATATATAT
90149152 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
90149167 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
90149182 TTCAATCAATATAAA
1 TTCAATCAATATAAA
90149197 TT
1 TT
90149199 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:90151328 original size:15 final size:16
Alignment explanation
Indices: 90151273--90151332 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 16
90151263 TGGTTGGTAC
90151273 AAAATTTTGATATTTT
1 AAAATTTTGATATTTT
*
90151289 AAAA---T-AGA-TTT
1 AAAATTTTGATATTTT
90151300 AAAATTTTGATATTTT
1 AAAATTTTGATATTTT
*
90151316 AAAATTTT-TTATTTT
1 AAAATTTTGATATTTT
90151331 AA
1 AA
90151333 CCATTTTAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
11 7 0.19
12 2 0.06
13 1 0.03
14 1 0.03
15 10 0.28
16 15 0.42
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
AAAATTTTGATATTTT
Found at i:90161218 original size:47 final size:47
Alignment explanation
Indices: 90161108--90161219 Score: 129
Period size: 47 Copynumber: 2.4 Consensus size: 47
90161098 TCCGGGATAA
* * *
90161108 GCACATAGTGCTTCATCGGAATAAATCCGGAACTTTAACATTATAGT
1 GCACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGT
* * * *
90161155 ACACAAAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTAGTCG-
1 GCACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGT
90161202 GCACATAGTG-TCTCATCG
1 GCACATAGTGCT-TCATCG
90161220 ACTCAATGTC
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
46 1 0.02
47 50 0.94
48 2 0.04
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (47 bp):
GCACATAGTGCTTCATCGGAACAAATCCGAAACTTTAACAGTATAGT
Found at i:90164054 original size:21 final size:19
Alignment explanation
Indices: 90164038--90164076 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
90164028 ACTTTAATTG
90164038 TTTTATATATATTTTTATAAT
1 TTTTATATAT-TTTTTA-AAT
90164059 TTTTATATATTTTTTAAA
1 TTTTATATATTTTTTAAA
90164077 AATATATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 6 0.33
21 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTATATATTTTTTAAAT
Found at i:90178893 original size:81 final size:81
Alignment explanation
Indices: 90178755--90178903 Score: 262
Period size: 81 Copynumber: 1.8 Consensus size: 81
90178745 TCTACTGGTG
* *
90178755 CCATCTATTTAGAGACAGAGAAGATAGAACCCTTATAGAGTTGTAGAGGCTTGTTTCAAATAGAA
1 CCATCTATTTAGAGACAGAGAAGATAGAACCCTTATAAAGTTGTAGAGGCTTATTTCAAATAGAA
90178820 AAAAAAAACATTCTAC
66 AAAAAAAACATTCTAC
* *
90178836 CCATCTATTTAGAGATAGAGAAGATAGAACCCTTATAAAGTTGTAGAGGTTTATTTCAAATAGAA
1 CCATCTATTTAGAGACAGAGAAGATAGAACCCTTATAAAGTTGTAGAGGCTTATTTCAAATAGAA
90178901 AAA
66 AAA
90178904 GAACATCCTA
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 64 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (81 bp):
CCATCTATTTAGAGACAGAGAAGATAGAACCCTTATAAAGTTGTAGAGGCTTATTTCAAATAGAA
AAAAAAAACATTCTAC
Found at i:90184273 original size:18 final size:19
Alignment explanation
Indices: 90184250--90184287 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
90184240 AAAACTAAAA
*
90184250 TATATTTTTAAAT-TTATT
1 TATATTATTAAATATTATT
90184268 TATATTATTAAATATTATT
1 TATATTATTAAATATTATT
90184287 T
1 T
90184288 CATCAATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
TATATTATTAAATATTATT
Found at i:90191204 original size:165 final size:166
Alignment explanation
Indices: 90190945--90191272 Score: 543
Period size: 165 Copynumber: 2.0 Consensus size: 166
90190935 GAGAAATTCT
** * *
90190945 ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCCTAAATCGTATTTCTGGATCTATCACA
1 ATTTTTATTATCATAAAAATATATAATTTAATT-CCCCCTAAATCGTATTTCTCAATCCACCACA
*
90191010 GAAAAATGCCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
65 GAAAAAAGCCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
90191075 ACTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
130 ACTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
*
90191112 ATTTTTATTATCATAAAAATATATAATTTAATT-CCCCTAAATCGTATTTCTCAATCCGCCACA-
1 ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCTAAATCGTATTTCTCAATCCACCACAG
*
90191175 AAAAAAGACCCTTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
66 AAAAAAG-CCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAAT
* *
90191240 GCTTTTTTTGGTGCGATAATTTTTATATTTTTT
130 ACTTCTTTTGGTGCGATAATTTTTATATTTTTT
90191273 TTATAAAATT
Statistics
Matches: 151, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
164 6 0.04
165 112 0.74
167 33 0.22
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.40
Consensus pattern (166 bp):
ATTTTTATTATCATAAAAATATATAATTTAATTCCCCCTAAATCGTATTTCTCAATCCACCACAG
AAAAAAGCCATTTCACTATTAACTTTAACGGTCAACCATTAAAGCTATAGAAAAATTATAAAATA
CTTCTTTTGGTGCGATAATTTTTATATTTTTTAATA
Found at i:90191383 original size:20 final size:22
Alignment explanation
Indices: 90191347--90191387 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
90191337 TTTTTTCTAT
90191347 ATTTATGTATATTTTATAAAAA
1 ATTTATGTATATTTTATAAAAA
90191369 ATTTATG-AT-TTTTATAAAA
1 ATTTATGTATATTTTATAAAA
90191388 TTTTACATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (22 bp):
ATTTATGTATATTTTATAAAAA
Found at i:90191392 original size:19 final size:19
Alignment explanation
Indices: 90191319--90191424 Score: 72
Period size: 19 Copynumber: 5.4 Consensus size: 19
90191309 TTCTCACGAC
*
90191319 TTTATAAAATTTTATAATT
1 TTTATAAAATTTTATGATT
***
90191338 TTT-TTCTATATTTATGTATAT
1 TTTATAAAAT-TTTATG-AT-T
*
90191359 TTTATAAAAAATTTATGATT
1 TTTAT-AAAATTTTATGATT
*
90191379 TTTATAAAATTTTACAT-TTT
1 TTTATAAAATTTT--ATGATT
**
90191399 TTTATAATTTTTTATGATT
1 TTTATAAAATTTTATGATT
90191418 TTTATAA
1 TTTATAA
90191425 GTTTTTCTAT
Statistics
Matches: 66, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
18 5 0.08
19 24 0.36
20 21 0.32
21 8 0.12
22 7 0.11
23 1 0.02
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTATAAAATTTTATGATT
Found at i:90191409 original size:9 final size:9
Alignment explanation
Indices: 90191397--90191491 Score: 55
Period size: 10 Copynumber: 9.8 Consensus size: 9
90191387 ATTTTACATT
90191397 TTTTTATAA
1 TTTTTATAA
*
90191406 TTTTTTATGA
1 -TTTTTATAA
90191416 TTTTTATAA
1 TTTTTATAA
*
90191425 GTTTTTCTATA
1 -TTTTTATA-A
* *
90191436 TTTTAATATT
1 TTTTTATA-A
90191446 TTTTTATTAAA
1 TTTTTA-T-AA
* *
90191457 ATTTAATAA
1 TTTTTATAA
90191466 TTTTTATAA
1 TTTTTATAA
* *
90191475 CTTTTATGTA
1 TTTTTAT-AA
90191485 TTTTTAT
1 TTTTTAT
90191492 TTTTATCATT
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
9 23 0.35
10 35 0.54
11 6 0.09
12 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (9 bp):
TTTTTATAA
Found at i:90191413 original size:10 final size:10
Alignment explanation
Indices: 90191377--90191479 Score: 52
Period size: 10 Copynumber: 10.3 Consensus size: 10
90191367 AAATTTATGA
*
90191377 TTTTTATAAA
1 TTTTTATAAT
* * *
90191387 ATTTTACATT
1 TTTTTATAAT
90191397 TTTTTATAAT
1 TTTTTATAAT
*
90191407 TTTTTATGA-
1 TTTTTATAAT
90191416 TTTTTATAAGT
1 TTTTTATAA-T
90191427 TTTTCTAT-A-
1 TTTT-TATAAT
* *
90191436 TTTTAATATT
1 TTTTTATAAT
*
90191446 TTTTTATTAAA
1 TTTTTA-TAAT
* *
90191457 ATTTAATAA-
1 TTTTTATAAT
90191466 TTTTTATAACT
1 TTTTTATAA-T
90191477 TTT
1 TTT
90191480 ATGTATTTTT
Statistics
Matches: 67, Mismatches: 18, Indels: 15
0.67 0.18 0.15
Matches are distributed among these distances:
8 2 0.03
9 19 0.28
10 29 0.43
11 14 0.21
12 3 0.04
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:90191439 original size:19 final size:19
Alignment explanation
Indices: 90191370--90191452 Score: 71
Period size: 20 Copynumber: 4.3 Consensus size: 19
90191360 TTATAAAAAA
90191370 TTTATGATTTTTATAAAATTT
1 TTTATGATTTTTAT--AATTT
** *
90191391 TACAT-TTTTTTATAATTT
1 TTTATGATTTTTATAATTT
90191409 TTTATGATTTTTATAAGTTT
1 TTTATGATTTTTATAA-TTT
* *
90191429 TTCTAT-ATTTTAATATTTT
1 TT-TATGATTTTTATAATTT
90191448 TTTAT
1 TTTAT
90191453 TAAAATTTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
18 11 0.22
19 14 0.27
20 20 0.39
21 6 0.12
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (19 bp):
TTTATGATTTTTATAATTT
Found at i:90191449 original size:39 final size:39
Alignment explanation
Indices: 90191370--90191452 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
90191360 TTATAAAAAA
* *
90191370 TTTATGATTTTTATAAAATTTTACATTTTTTTATAATTT
1 TTTATGATTTTTATAAAATTTTACATATTTTAATAATTT
* * *
90191409 TTTATGATTTTTAT-AAGTTTTTCTATATTTTAATATTTT
1 TTTATGATTTTTATAAAATTTTAC-ATATTTTAATAATTT
90191448 TTTAT
1 TTTAT
90191453 TAAAATTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
38 7 0.18
39 31 0.82
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (39 bp):
TTTATGATTTTTATAAAATTTTACATATTTTAATAATTT
Found at i:90200420 original size:30 final size:30
Alignment explanation
Indices: 90200338--90200429 Score: 114
Period size: 30 Copynumber: 3.1 Consensus size: 30
90200328 AACTATGTTG
* *
90200338 CTCACATAAGCAGAATTTATATCAAGGTTA
1 CTCACAAAAGCAGAATTTATATTAAGGTTA
*
90200368 CTCACAAAAGCAGAATTTATATTAAGGTTT
1 CTCACAAAAGCAGAATTTATATTAAGGTTA
* ** *
90200398 CTCACACAAGCTTAATTTATATT-AGATTA
1 CTCACAAAAGCAGAATTTATATTAAGGTTA
90200427 CTC
1 CTC
90200430 GTCTGGGCTA
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
29 7 0.13
30 47 0.87
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (30 bp):
CTCACAAAAGCAGAATTTATATTAAGGTTA
Found at i:90209804 original size:12 final size:12
Alignment explanation
Indices: 90209789--90209814 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90209779 AATTTTATGC
90209789 AATTTTTTTATA
1 AATTTTTTTATA
90209801 AATTTTTTTATA
1 AATTTTTTTATA
90209813 AA
1 AA
90209815 GAAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTTTTTTATA
Found at i:90214152 original size:21 final size:20
Alignment explanation
Indices: 90214126--90214164 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
90214116 TTCACGAATA
90214126 TTTTAAGAATTTAAATTTTTT
1 TTTTAA-AATTTAAATTTTTT
90214147 TTTTAAAATTTAAATTTT
1 TTTTAAAATTTAAATTTT
90214165 AATTCTTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTTAAAATTTAAATTTTTT
Found at i:90214819 original size:6 final size:6
Alignment explanation
Indices: 90214808--90214844 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
90214798 GCATAGACAG
*
90214808 GGCAGA GGCAGA GGCAGA GGCAGA GGCAGA GGTAGA G
1 GGCAGA GGCAGA GGCAGA GGCAGA GGCAGA GGCAGA G
90214845 CCCCCTTCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.51, T:0.03
Consensus pattern (6 bp):
GGCAGA
Found at i:90221603 original size:16 final size:14
Alignment explanation
Indices: 90221539--90221603 Score: 51
Period size: 17 Copynumber: 4.2 Consensus size: 14
90221529 ATTTATCATG
90221539 AAATTAACTAAATTAT
1 AAATTAA-TAAA-TAT
*
90221555 ACAATAAATCAAATA-
1 A-AATTAAT-AAATAT
90221570 AAATTAATAAATATT
1 AAATTAATAAATA-T
90221585 AAATTATATAAAATAT
1 AAATTA-AT-AAATAT
90221601 AAA
1 AAA
90221604 CTAAATACGA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
13 5 0.12
14 6 0.15
15 7 0.17
16 10 0.24
17 13 0.32
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (14 bp):
AAATTAATAAATAT
Found at i:90222931 original size:17 final size:16
Alignment explanation
Indices: 90222905--90222938 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
90222895 ACATTTGGCA
90222905 AAAAATAATAAAAATT
1 AAAAATAATAAAAATT
90222921 AAAAATCAATAAAAATT
1 AAAAAT-AATAAAAATT
90222938 A
1 A
90222939 TAGAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAATAATAAAAATT
Found at i:90223064 original size:9 final size:9
Alignment explanation
Indices: 90223046--90223088 Score: 70
Period size: 9 Copynumber: 4.9 Consensus size: 9
90223036 ATTCTATATA
90223046 TTTTAT-AT
1 TTTTATAAT
90223054 TTTTATAAT
1 TTTTATAAT
90223063 TTTTATAAT
1 TTTTATAAT
90223072 TTTTATAAT
1 TTTTATAAT
*
90223081 TTTAATAA
1 TTTTATAA
90223089 AATTCAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
8 6 0.18
9 27 0.82
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
TTTTATAAT
Found at i:90223084 original size:17 final size:16
Alignment explanation
Indices: 90223040--90223084 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 16
90223030 TCTGTAATTC
90223040 TATATATTTTATATTTT
1 TATA-ATTTTATATTTT
90223057 TATAATTTTTATAATTTT
1 TATAA-TTTTAT-ATTTT
90223075 TATAATTTTA
1 TATAATTTTA
90223085 ATAAAATTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.04
17 15 0.58
18 10 0.38
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
TATAATTTTATATTTT
Found at i:90223359 original size:44 final size:42
Alignment explanation
Indices: 90223296--90223622 Score: 344
Period size: 44 Copynumber: 8.0 Consensus size: 42
90223286 CTTTATTAAC
*
90223296 TTTTTTTGTTAGAGGAAAACCCCTCTATTTAAAAAATATATTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTT-AAAAATATATTA
*
90223339 TTTCTTTTGTTAGAAAAAAACCCCTCTATTT-AAAA-ATATTA
1 TTT-TTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
* *
90223380 --TTTTT-TTAGAGAAAAACCCTTTTATTTAAAAAAAATATATTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTT---AAAAATATATTA
* *
90223422 -TCTTTTGTTAGAGGAAAACCCCTCTATTTAAAAATA-A-TA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
90223461 TTTTTTTGTTAGAGAAAAA-CCCTCTATTTAAAAATA-A-TA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
* ** *
90223500 --TTATT-TTAGAGAAAAACCATTCTATTT-AAAAGATATTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
* *
90223538 -TTTTTTGTTAGAGAAAAGCCCCTCTATTTCAAAATATATTTTA
1 TTTTTTTGTTAGAGAAAAACCCCTCTATTT-AAAA-ATATATTA
*
90223581 TTTTTTTATTAGAGAAAAACCCCTCTATTTTAAAAAATATAT
1 TTTTTTTGTTAGAGAAAAACCCCTCTA-TTT-AAAAATATAT
90223623 ATTATTATGA
Statistics
Matches: 240, Mismatches: 25, Indels: 37
0.79 0.08 0.12
Matches are distributed among these distances:
36 16 0.07
37 32 0.13
38 6 0.03
39 27 0.11
40 36 0.15
41 17 0.07
42 13 0.05
43 13 0.05
44 73 0.30
45 7 0.03
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (42 bp):
TTTTTTTGTTAGAGAAAAACCCCTCTATTTAAAAATATATTA
Found at i:90223429 original size:81 final size:82
Alignment explanation
Indices: 90223298--90223625 Score: 363
Period size: 81 Copynumber: 4.0 Consensus size: 82
90223288 TTATTAACTT
* *
90223298 TTTTTGTTAGAGGAAAACCCCTCTATTT-AAAAAATATATTATTTCTTTTGTTAGAAAAAAACCC
1 TTTTTGTTAGAGAAAAACCCCTCTATTTAAAAAAATATATTA--TCTTTTGTTAGAGAAAAACCC
90223362 CTCTATTTAAAAATAT-TA
64 CTCTATTTAAAAATATATA
* * *
90223380 TTTTT-TTAGAGAAAAACCCTTTTATTTAAAAAAAATATATTATCTTTTGTTAGAGGAAAACCCC
1 TTTTTGTTAGAGAAAAACCCCTCTATTT-AAAAAAATATATTATCTTTTGTTAGAGAAAAACCCC
*
90223444 TCTATTTAAAAATAATATT
65 TCTATTTAAAAAT-ATATA
* **
90223463 TTTTTGTTAGAGAAAAA-CCCTCTATTT--AAAAATA-A-TAT-TATT-TTAGAGAAAAACCATT
1 TTTTTGTTAGAGAAAAACCCCTCTATTTAAAAAAATATATTATCTTTTGTTAGAGAAAAACCCCT
90223521 CTATTTAAAAGATAT-TA
66 CTATTTAAAA-ATATATA
* * * * * *
90223538 TTTTTTGTTAGAGAAAAGCCCCTCTATTTCAAAATATATTTTATTTTTTTATTAGAGAAAAACCC
1 -TTTTTGTTAGAGAAAAACCCCTCTATTTAAAAAAATATATTA-TCTTTTGTTAGAGAAAAACCC
90223603 CTCTATTTTAAAAAATATATA
64 CTCTA-TTT-AAAAATATATA
90223624 TT
1 TT
90223626 ATTATGAGTT
Statistics
Matches: 209, Mismatches: 19, Indels: 33
0.80 0.07 0.13
Matches are distributed among these distances:
75 1 0.00
76 41 0.20
77 15 0.07
78 3 0.01
79 7 0.03
80 7 0.03
81 54 0.26
82 8 0.04
83 30 0.14
84 28 0.13
85 9 0.04
86 6 0.03
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (82 bp):
TTTTTGTTAGAGAAAAACCCCTCTATTTAAAAAAATATATTATCTTTTGTTAGAGAAAAACCCCT
CTATTTAAAAATATATA
Found at i:90226357 original size:30 final size:28
Alignment explanation
Indices: 90226323--90226383 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 28
90226313 ATAATTTACA
90226323 AAAATTAGATC-AAATAAAAACTTCATATAT
1 AAAATTAGA-CAAAATAAAAA-TTCATAT-T
* *
90226353 AAAATTATACAAAATTAAAATTCATATT
1 AAAATTAGACAAAATAAAAATTCATATT
90226381 AAA
1 AAA
90226384 CCATAATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 4 0.14
29 8 0.29
30 16 0.57
ACGTcount: A:0.59, C:0.08, G:0.02, T:0.31
Consensus pattern (28 bp):
AAAATTAGACAAAATAAAAATTCATATT
Found at i:90226599 original size:16 final size:15
Alignment explanation
Indices: 90226561--90226602 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
90226551 TAGGCTTCTT
*
90226561 TATAAAAATAA-TAT
1 TATAAAAATAATTAC
*
90226575 TAAAAAAATAATTAAC
1 TATAAAAATAATT-AC
90226591 TATAAAAATAAT
1 TATAAAAATAAT
90226603 GAGAAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 10 0.43
15 1 0.04
16 12 0.52
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (15 bp):
TATAAAAATAATTAC
Found at i:90226610 original size:30 final size:30
Alignment explanation
Indices: 90226561--90226618 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
90226551 TAGGCTTCTT
*
90226561 TATAAAAATAATATTAAAAAAATAATTAAC
1 TATAAAAATAATATGAAAAAAATAATTAAC
*
90226591 TATAAAAATAATGA-GAAAAAATTAATTA
1 TATAAAAATAAT-ATGAAAAAAATAATTA
90226619 TGAAAACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (30 bp):
TATAAAAATAATATGAAAAAAATAATTAAC
Found at i:90227136 original size:8 final size:9
Alignment explanation
Indices: 90227120--90227162 Score: 56
Period size: 8 Copynumber: 5.1 Consensus size: 9
90227110 TAATTTTAAG
90227120 ATATATTTT
1 ATATATTTT
90227129 AT-TATTTT
1 ATATATTTT
90227137 -TATATTTT
1 ATATATTTT
*
90227145 ATATATGTT
1 ATATATTTT
90227154 -TATATTTT
1 ATATATTTT
90227162 A
1 A
90227163 AATTATTGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
7 1 0.03
8 19 0.66
9 9 0.31
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
ATATATTTT
Found at i:90227157 original size:17 final size:16
Alignment explanation
Indices: 90227121--90227162 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
90227111 AATTTTAAGA
*
90227121 TATATTTTATTATTTT
1 TATATTTTATTATGTT
90227137 TATATTTTATATATGTT
1 TATATTTTAT-TATGTT
90227154 TATATTTTA
1 TATATTTTA
90227163 AATTATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.42
17 14 0.58
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (16 bp):
TATATTTTATTATGTT
Found at i:90230305 original size:14 final size:14
Alignment explanation
Indices: 90230286--90230312 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90230276 TTAATTACGG
90230286 AAAGATATTCTCGA
1 AAAGATATTCTCGA
90230300 AAAGATATTCTCG
1 AAAGATATTCTCG
90230313 TAACTTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (14 bp):
AAAGATATTCTCGA
Found at i:90233159 original size:46 final size:46
Alignment explanation
Indices: 90233095--90233322 Score: 314
Period size: 46 Copynumber: 5.0 Consensus size: 46
90233085 TTTGACATGA
* * * * * *
90233095 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* * ***
90233141 TGTCATGGTATTTTTCAACCATGGTCTTGTTCATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
90233187 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
90233233 TGCCACGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
90233279 TGCCATGGTATCTTTCAACCACGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
90233323 AGAGCACACT
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 4 0.02
46 159 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:90236524 original size:25 final size:26
Alignment explanation
Indices: 90236459--90236547 Score: 76
Period size: 25 Copynumber: 3.4 Consensus size: 26
90236449 TATTACAAAG
*
90236459 TATATACATAGTATAAAAAATATATACA
1 TATATATATAGT-T-AAAAATATATACA
* *
90236487 TAGTGTA-AT-GTTAAAAATACATACA
1 TA-TATATATAGTTAAAAATATATACA
* *
90236512 TAT-TATATAGTTATTAAATATATATA
1 TATATATATAGTTA-AAAATATATACA
90236538 TATATATATA
1 TATATATATA
90236548 AAAGATAATA
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
23 2 0.04
24 3 0.06
25 18 0.35
26 13 0.25
27 8 0.16
28 4 0.08
29 3 0.06
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (26 bp):
TATATATATAGTTAAAAATATATACA
Found at i:90236669 original size:24 final size:23
Alignment explanation
Indices: 90236633--90236698 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 23
90236623 AAAAAGGTAT
*
90236633 ATATATACGTAATATATA-AAAA
1 ATATATACATAATATATATAAAA
*
90236655 ATGCATATACATAATATAATATTAAA
1 AT--ATATACATAATAT-ATATAAAA
*
90236681 ATATCTACATAATATATA
1 ATATATACATAATATATA
90236699 CATATTAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
22 2 0.05
23 3 0.08
24 24 0.65
25 3 0.08
26 5 0.14
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.35
Consensus pattern (23 bp):
ATATATACATAATATATATAAAA
Found at i:90236700 original size:11 final size:11
Alignment explanation
Indices: 90236633--90236702 Score: 50
Period size: 11 Copynumber: 6.0 Consensus size: 11
90236623 AAAAAGGTAT
*
90236633 ATATATACGTA
1 ATATATACATA
* *
90236644 ATATATAAAAA
1 ATATATACATA
90236655 ATGCATATACATA
1 AT--ATATACATA
* *
90236668 ATATAATATTAAA
1 ATAT-ATA-CATA
*
90236681 ATATCTACATA
1 ATATATACATA
90236692 ATATATACATA
1 ATATATACATA
90236703 TTAGAAATAA
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
11 24 0.55
12 5 0.11
13 15 0.34
ACGTcount: A:0.54, C:0.09, G:0.03, T:0.34
Consensus pattern (11 bp):
ATATATACATA
Found at i:90236942 original size:45 final size:43
Alignment explanation
Indices: 90236831--90236946 Score: 115
Period size: 45 Copynumber: 2.5 Consensus size: 43
90236821 ATAATATAAA
90236831 AATACATACATGAAACAGTATAAAAATATATATAACTAATAACATTAG
1 AATACATACAT--AACA-TAT-AAAA-ATATATAACTAATAACATTAG
* * * *
90236879 AATATATACATAACATATATAAAATATATAATTGATAATATTAAG
1 AATACATACATAACATATA-AAAATATATAACTAATAACATT-AG
* *
90236924 AATACATGCATAATATATAAAAA
1 AATACATACATAACATATAAAAA
90236947 CGTGTACAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
44 21 0.36
45 24 0.41
46 4 0.07
48 10 0.17
ACGTcount: A:0.57, C:0.08, G:0.05, T:0.30
Consensus pattern (43 bp):
AATACATACATAACATATAAAAATATATAACTAATAACATTAG
Found at i:90237134 original size:20 final size:20
Alignment explanation
Indices: 90237109--90237149 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
90237099 TATAATAATG
90237109 ATATT-AATAAAATATAAATA
1 ATATTAAATAAAATA-AAATA
90237129 ATATTAAAATAAAATAAAATA
1 ATATT-AAATAAAATAAAATA
90237150 CGTAAAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 5 0.26
22 9 0.47
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
ATATTAAATAAAATAAAATA
Found at i:90239136 original size:24 final size:22
Alignment explanation
Indices: 90239082--90239141 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 22
90239072 AAAAATGTAT
* *
90239082 AAAATTATTAAATATTAAAATA
1 AAAATTATAAAATATTAAAAGA
* *
90239104 AAAAATATAAATATATTTTAAAGA
1 AAAATTATAAA-ATA-TTAAAAGA
90239128 AAAATTATAAAATA
1 AAAATTATAAAATA
90239142 ATACGGGCGG
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
22 9 0.29
23 6 0.19
24 16 0.52
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATTATAAAATATTAAAAGA
Found at i:90245559 original size:10 final size:11
Alignment explanation
Indices: 90245534--90245559 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
90245524 TATTTATATG
90245534 TTTTTTAGAAA
1 TTTTTTAGAAA
90245545 TTTTTTAGAAA
1 TTTTTTAGAAA
90245556 TTTT
1 TTTT
90245560 ATAATTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (11 bp):
TTTTTTAGAAA
Found at i:90245598 original size:18 final size:19
Alignment explanation
Indices: 90245577--90245613 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
90245567 TTCTTAAAAA
90245577 TATAAA-TTTTGAAATTTT
1 TATAAAGTTTTGAAATTTT
90245595 TATAAATGTTTTGAAATTT
1 TATAAA-GTTTTGAAATTT
90245614 AAATGTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TATAAAGTTTTGAAATTTT
Found at i:90245645 original size:12 final size:13
Alignment explanation
Indices: 90245622--90245647 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
90245612 TTAAATGTTA
90245622 TTTTGAATTTTTT
1 TTTTGAATTTTTT
90245635 TTTTGAATTTTTT
1 TTTTGAATTTTTT
90245648 GTTAAGAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (13 bp):
TTTTGAATTTTTT
Found at i:90245730 original size:9 final size:9
Alignment explanation
Indices: 90245716--90245754 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
90245706 ACACTAATCT
90245716 ATTATTCGA
1 ATTATTCGA
*
90245725 ATTATTAGA
1 ATTATTCGA
90245734 ATTATTCGA
1 ATTATTCGA
* *
90245743 GTTATTCAA
1 ATTATTCGA
90245752 ATT
1 ATT
90245755 GTGAAATTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (9 bp):
ATTATTCGA
Found at i:90254101 original size:10 final size:10
Alignment explanation
Indices: 90254086--90254114 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
90254076 AATCCGTTCC
90254086 TTTATTTTTT
1 TTTATTTTTT
90254096 TTTA-TTTTT
1 TTTATTTTTT
90254105 TTTATTTTTT
1 TTTATTTTTT
90254115 GCACTTGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:90258630 original size:32 final size:32
Alignment explanation
Indices: 90258589--90258652 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
90258579 ACACCAACCG
90258589 AAAGGCTAAGTTGGGTTAGCAATAGGCAAAAT
1 AAAGGCTAAGTTGGGTTAGCAATAGGCAAAAT
90258621 AAAGGCTAAGTTGGGTTAGCAATAGGCAAAAT
1 AAAGGCTAAGTTGGGTTAGCAATAGGCAAAAT
90258653 CCCAATTAGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.41, C:0.09, G:0.28, T:0.22
Consensus pattern (32 bp):
AAAGGCTAAGTTGGGTTAGCAATAGGCAAAAT
Found at i:90260712 original size:14 final size:14
Alignment explanation
Indices: 90260695--90260721 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90260685 AGTGGATTGA
90260695 TTAAAGATTAAAGG
1 TTAAAGATTAAAGG
90260709 TTAAAGATTAAAG
1 TTAAAGATTAAAG
90260722 CAACTAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.30
Consensus pattern (14 bp):
TTAAAGATTAAAGG
Found at i:90263294 original size:15 final size:16
Alignment explanation
Indices: 90263261--90263309 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
90263251 GTTTAATAAA
*
90263261 TAAAAAATATAAAATTAT
1 TAAATAATAT-AAA-TAT
*
90263279 TAAATTAT-TAAATAT
1 TAAATAATATAAATAT
90263294 TAAATAATATAAATAT
1 TAAATAATATAAATAT
90263310 ATGTTTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 10 0.37
16 10 0.37
17 1 0.04
18 6 0.22
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAATAATATAAATAT
Found at i:90263975 original size:16 final size:18
Alignment explanation
Indices: 90263936--90263969 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
90263926 TAAGTTTATA
90263936 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
90263953 ATTTTTATATATTATGT
1 ATATTTATATATTATGT
90263970 AATTTAGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:90266260 original size:38 final size:40
Alignment explanation
Indices: 90266199--90266285 Score: 115
Period size: 38 Copynumber: 2.2 Consensus size: 40
90266189 TAAAAAGTAT
* *
90266199 TTATATTAAAAAAACTATCATAAATATAATAAATGTTTTA
1 TTATATTAAAAAAACTATAATAAATATAATAAATATTTTA
* *
90266239 TTATATTAAAAACAC-A-AATAAATATAATAAATATTTTG
1 TTATATTAAAAAAACTATAATAAATATAATAAATATTTTA
*
90266277 TTGTATTAA
1 TTATATTAA
90266286 TATAAATGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
38 27 0.64
39 1 0.02
40 14 0.33
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (40 bp):
TTATATTAAAAAAACTATAATAAATATAATAAATATTTTA
Found at i:90267206 original size:19 final size:20
Alignment explanation
Indices: 90267163--90267199 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
90267153 TTTATTTTAT
90267163 TTATTTTAATATCAATATAA
1 TTATTTTAATATCAATATAA
*
90267183 TTATTTTTAT-TCAATAT
1 TTATTTTAATATCAATAT
90267200 TAATATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATTTTAATATCAATATAA
Found at i:90269142 original size:15 final size:16
Alignment explanation
Indices: 90269122--90269158 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
90269112 TAATATTTTA
90269122 AAAATTA-TAAAAATT
1 AAAATTATTAAAAATT
90269137 AAAATTATTAAAAATT
1 AAAATTATTAAAAATT
90269153 AAAATT
1 AAAATT
90269159 TAATTTTAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AAAATTATTAAAAATT
Found at i:90273463 original size:21 final size:21
Alignment explanation
Indices: 90273437--90273477 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
90273427 ACTTTTTTAA
90273437 AAGTTAAAAGT-CAAAACCATT
1 AAGTTAAAA-TACAAAACCATT
90273458 AAGTTAAAATACAAAACCAT
1 AAGTTAAAATACAAAACCAT
90273478 AATATTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (21 bp):
AAGTTAAAATACAAAACCATT
Found at i:90283356 original size:3 final size:3
Alignment explanation
Indices: 90283348--90283380 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
90283338 CTTCGAGGCT
90283348 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
90283381 GAACCCCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:90289762 original size:32 final size:32
Alignment explanation
Indices: 90289726--90289789 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
90289716 ACTTTTTCTC
90289726 TTGTTTTTCCACATGTAAATTTTTAATTGGTT
1 TTGTTTTTCCACATGTAAATTTTTAATTGGTT
*
90289758 TTGTTTTTCCACATGTAAGTTTTTAATTGGTT
1 TTGTTTTTCCACATGTAAATTTTTAATTGGTT
90289790 ATATATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.20, C:0.09, G:0.14, T:0.56
Consensus pattern (32 bp):
TTGTTTTTCCACATGTAAATTTTTAATTGGTT
Found at i:90294317 original size:8 final size:8
Alignment explanation
Indices: 90294287--90294341 Score: 58
Period size: 8 Copynumber: 6.6 Consensus size: 8
90294277 TAACTAGGGT
90294287 AAGAAAAA
1 AAGAAAAA
*
90294295 GCAAGAAGAA
1 --AAGAAAAA
90294305 AAGAAAAA
1 AAGAAAAA
*
90294313 TAGAAAAA
1 AAGAAAAA
90294321 AAGAAAAA
1 AAGAAAAA
90294329 AA-AAGAAA
1 AAGAA-AAA
90294337 AAGAA
1 AAGAA
90294342 CAAGAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
7 2 0.05
8 28 0.72
9 2 0.05
10 7 0.18
ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02
Consensus pattern (8 bp):
AAGAAAAA
Found at i:90294322 original size:16 final size:15
Alignment explanation
Indices: 90294297--90294350 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
90294287 AAGAAAAAGC
*
90294297 AAGAAGAAAAGAAAA
1 AAGAAAAAAAGAAAA
90294312 ATAGAAAAAAAGAAAA
1 A-AGAAAAAAAGAAAA
* *
90294328 AAAAAGAAAAAG-AAC
1 AAGAA-AAAAAGAAAA
90294343 AAGAAAAA
1 AAGAAAAA
90294351 TGGGACATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 3 0.09
15 10 0.30
16 20 0.61
ACGTcount: A:0.81, C:0.02, G:0.15, T:0.02
Consensus pattern (15 bp):
AAGAAAAAAAGAAAA
Found at i:90294349 original size:18 final size:18
Alignment explanation
Indices: 90294287--90294350 Score: 60
Period size: 18 Copynumber: 3.4 Consensus size: 18
90294277 TAACTAGGGT
* *
90294287 AAGAAAAAGCAAGAAGAA
1 AAGAAAAAGAAAAAAGAA
90294305 AAGAAAAATAGAAAAAAAGAA
1 AAG-AAAA-AG-AAAAAAGAA
90294326 AA-AAAAAG-AAAAAGAA
1 AAGAAAAAGAAAAAAGAA
90294342 CAAGAAAAA
1 -AAGAAAAA
90294351 TGGGACATGC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
16 8 0.21
17 2 0.05
18 10 0.26
19 8 0.21
20 2 0.05
21 9 0.23
ACGTcount: A:0.80, C:0.03, G:0.16, T:0.02
Consensus pattern (18 bp):
AAGAAAAAGAAAAAAGAA
Found at i:90300870 original size:49 final size:48
Alignment explanation
Indices: 90300770--90300870 Score: 116
Period size: 49 Copynumber: 2.1 Consensus size: 48
90300760 CCACATGCCT
* * *
90300770 GTGTCTATTTAACAGATTGTAACATAGCCTAAGCCACACCACACGATC
1 GTGTCTATTTAACAGATTCTAACAGAGCCTAAGCCACACCACACGAGC
* *
90300818 GTGTCTATTTAGCAGATTCTAAACACGA-CCTAAGCCAC-CTCACACGGGC
1 GTGTCTATTTAACAGATTCT-AACA-GAGCCTAAGCCACAC-CACACGAGC
90300867 GTGT
1 GTGT
90300871 TCCTGTCGAG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
48 19 0.42
49 25 0.56
50 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (48 bp):
GTGTCTATTTAACAGATTCTAACAGAGCCTAAGCCACACCACACGAGC
Found at i:90307474 original size:20 final size:21
Alignment explanation
Indices: 90307427--90307474 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
90307417 CCCTTATTTG
*
90307427 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
90307447 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
90307466 TTATTATTA
1 TTATTATTA
90307475 CTATTATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:90309914 original size:61 final size:62
Alignment explanation
Indices: 90309812--90309935 Score: 196
Period size: 61 Copynumber: 2.0 Consensus size: 62
90309802 ATCTTTTTTT
*
90309812 GCATTCATGCATCAACATTACATTTCATCGCATGCAATAAATTTCCTAAAATCCAAAA-TAC
1 GCATTCATGCATCAACATTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAGTAC
* * * *
90309873 GCATTCATGCATCAACATTACGTTTCATTGCATATAGTAAATTTCCTAAAATCCAAAAGTAC
1 GCATTCATGCATCAACATTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAGTAC
90309935 G
1 G
90309936 TCGAGTTTAG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
61 53 0.93
62 4 0.07
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.31
Consensus pattern (62 bp):
GCATTCATGCATCAACATTACATTTCATCGCATACAATAAATTTCCTAAAATCCAAAAGTAC
Found at i:90311282 original size:11 final size:10
Alignment explanation
Indices: 90311218--90311298 Score: 54
Period size: 11 Copynumber: 7.5 Consensus size: 10
90311208 CAGTGGAGGC
*
90311218 AAAAAAAAGG
1 AAAAAAAAAG
90311228 ACAAAAAAAAG
1 A-AAAAAAAAG
* *
90311239 ACAAAAAAGG
1 AAAAAAAAAG
90311249 TAAAAAAAACGAG
1 -AAAAAAAA--AG
90311262 AAAATAAAAAG
1 AAAA-AAAAAG
*
90311273 CAAAAAAAAAC
1 -AAAAAAAAAG
* *
90311284 CAAATAAAAG
1 AAAAAAAAAG
90311294 AAAAA
1 AAAAA
90311299 CCTCTACTGG
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
10 18 0.33
11 23 0.43
12 8 0.15
13 5 0.09
ACGTcount: A:0.78, C:0.07, G:0.11, T:0.04
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:90311733 original size:7 final size:6
Alignment explanation
Indices: 90311719--90311770 Score: 50
Period size: 6 Copynumber: 7.8 Consensus size: 6
90311709 AAAAAAAACG
*
90311719 AAAAGA AAAATGAA AAAATGAA AAAAGA AAAGAAA AAAAGA AAAAGA AAAAG
1 AAAAGA AAAA-G-A AAAA-G-A AAAAGA AAA-AGA AAAAGA AAAAGA AAAAG
90311771 GAGAGGCCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
6 21 0.51
7 7 0.17
8 13 0.32
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.04
Consensus pattern (6 bp):
AAAAGA
Found at i:90311741 original size:15 final size:14
Alignment explanation
Indices: 90311719--90311769 Score: 61
Period size: 13 Copynumber: 3.7 Consensus size: 14
90311709 AAAAAAAACG
*
90311719 AAAAGAAAAATGAA
1 AAAAGAAAAAAGAA
90311733 AAAATGAAAAAAGAA
1 AAAA-GAAAAAAGAA
*
90311748 AAGA-AAAAAAG-A
1 AAAAGAAAAAAGAA
90311760 AAAAGAAAAA
1 AAAAGAAAAA
90311770 GGAGAGGCCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 4 0.12
13 12 0.38
14 4 0.12
15 12 0.38
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (14 bp):
AAAAGAAAAAAGAA
Found at i:90311757 original size:8 final size:7
Alignment explanation
Indices: 90311719--90311769 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
90311709 AAAAAAAACG
90311719 AAAAGAA
1 AAAAGAA
*
90311726 AAATGAA
1 AAAAGAA
90311733 AAAATGAA
1 AAAA-GAA
90311741 AAAAGAA
1 AAAAGAA
*
90311748 AAGA-AA
1 AAAAGAA
90311754 AAAAG-A
1 AAAAGAA
90311760 AAAAGAA
1 AAAAGAA
90311767 AAA
1 AAA
90311770 GGAGAGGCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
6 11 0.30
7 19 0.51
8 7 0.19
ACGTcount: A:0.82, C:0.00, G:0.14, T:0.04
Consensus pattern (7 bp):
AAAAGAA
Found at i:90311770 original size:20 final size:20
Alignment explanation
Indices: 90311710--90311770 Score: 72
Period size: 20 Copynumber: 3.0 Consensus size: 20
90311700 CTTCACTTGA
90311710 AAAAAAACG-AAAAGAAAAATG
1 AAAAAAA-GAAAAAGAAAAA-G
*
90311731 AAAAAATGAAAAA-AGAAAAG
1 AAAAAAAGAAAAAGA-AAAAG
90311751 AAAAAAAGAAAAAGAAAAAG
1 AAAAAAAGAAAAAGAAAAAG
90311771 GAGAGGCCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.80, C:0.02, G:0.15, T:0.03
Consensus pattern (20 bp):
AAAAAAAGAAAAAGAAAAAG
Found at i:90312911 original size:97 final size:95
Alignment explanation
Indices: 90312747--90312942 Score: 338
Period size: 97 Copynumber: 2.0 Consensus size: 95
90312737 GCAGCGAAGC
90312747 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
90312812 CTCCCTGCATCTGGCAGTGGAATAGATTGA
66 CTCCCAGCATCTGGCAGTGGAATAGATTGA
*
90312842 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
* *
90312907 ATCTCCCAGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCAGCATCTGGCAGTGGAATAGATTGA
90312939 AGAT
1 AGAT
90312943 TGCAGATCTT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 27 0.28
97 68 0.72
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCAGCATCTGGCAGTGGAATAGATTGA
Found at i:90313037 original size:134 final size:134
Alignment explanation
Indices: 90312842--90313180 Score: 534
Period size: 134 Copynumber: 2.5 Consensus size: 134
90312832 AATAGATTGA
*
90312842 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
90312907 ATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
64 ATCTCCCAGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
*
90312972 CGAAGC
129 CAAAGC
*
90312978 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
90313043 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCAGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
90313108 AAGC
131 AAGC
* ** * * * * **
90313112 AGGTTGAAGACGGCGGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
90313177 CTCC
66 CTCC
90313181 TGGGGCAAGA
Statistics
Matches: 188, Mismatches: 15, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
134 161 0.86
136 27 0.14
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCAGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
AAGC
Found at i:90313098 original size:46 final size:46
Alignment explanation
Indices: 90312909--90313105 Score: 136
Period size: 46 Copynumber: 4.4 Consensus size: 46
90312899 ATAACTCTAT
* * *
90312909 CTCCCAGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTAC
* * * * * *
90312955 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTAAAGATTGCAGATCTTAC
*** * * * ** * * *
90313001 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCT-TAC
*
90313043 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTAC
*
90313089 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
90313106 CAAAGCAGGT
Statistics
Matches: 105, Mismatches: 38, Indels: 16
0.66 0.24 0.10
Matches are distributed among these distances:
41 3 0.03
42 10 0.10
43 10 0.10
44 2 0.02
45 19 0.18
46 57 0.54
47 4 0.04
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTAAAGATTGCAGATCTTAC
Found at i:90313425 original size:132 final size:132
Alignment explanation
Indices: 90313189--90313832 Score: 1128
Period size: 132 Copynumber: 4.9 Consensus size: 132
90313179 CCTGGGGCAA
* *
90313189 GAAGTAGATCGAAGATAGCTGATCCTATCTT-CTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
90313253 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
90313318 GT
131 GT
* * *
90313320 GAAGTAGATCGAAGATAACTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * *
90313385 TCTTATCTTCCTATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTATTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
90313450 GT
131 GT
*
90313452 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
90313517 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
90313582 GT
131 GT
*
90313584 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
90313649 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
90313714 GT
131 GT
* * *
90313716 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
* * *
90313781 TCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTC
90313833 CCTGTATTTG
Statistics
Matches: 493, Mismatches: 19, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
131 30 0.06
132 463 0.94
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:90315441 original size:20 final size:21
Alignment explanation
Indices: 90315394--90315441 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
90315384 CCCTTATTTG
*
90315394 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
90315414 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
90315433 TTATTATTA
1 TTATTATTA
90315442 CTATTATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:90317982 original size:17 final size:17
Alignment explanation
Indices: 90317960--90317993 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
90317950 AAAAAGTTGA
90317960 AAAAAGAAATAGATTAG
1 AAAAAGAAATAGATTAG
90317977 AAAAAGAAATAGATTAG
1 AAAAAGAAATAGATTAG
90317994 GGTGGTTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (17 bp):
AAAAAGAAATAGATTAG
Found at i:90318715 original size:14 final size:14
Alignment explanation
Indices: 90318696--90318767 Score: 65
Period size: 14 Copynumber: 4.9 Consensus size: 14
90318686 CCATCTTCTG
90318696 AATATTATTTATAA
1 AATATTATTTATAA
90318710 AATATTATTTATATTA
1 AATATTATTTATA--A
* * *
90318726 ACTTATGATTCA-AA
1 A-ATATTATTTATAA
*
90318740 AATTTTTATTTATAA
1 AA-TATTATTTATAA
90318755 AATATTATTTATA
1 AATATTATTTATA
90318768 TTATATGTTA
Statistics
Matches: 45, Mismatches: 8, Indels: 10
0.71 0.13 0.16
Matches are distributed among these distances:
14 31 0.69
15 4 0.09
16 3 0.07
17 7 0.16
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (14 bp):
AATATTATTTATAA
Found at i:90327481 original size:14 final size:14
Alignment explanation
Indices: 90327462--90327501 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
90327452 TTGATTGCCA
90327462 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
90327476 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
90327490 GGAAAATGTTTT
1 GTAAAATGTTTT
90327502 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:90327510 original size:20 final size:20
Alignment explanation
Indices: 90327485--90327524 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
90327475 CGTAAAATGA
*
90327485 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
90327505 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
90327525 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:90327514 original size:34 final size:35
Alignment explanation
Indices: 90327470--90327536 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
90327460 CAGTAAAATG
*
90327470 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
90327504 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
90327537 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:90327540 original size:14 final size:15
Alignment explanation
Indices: 90327464--90327540 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
90327454 GATTGCCAGT
* *
90327464 AAAATG-TTTTCCGT
1 AAAATGATTTTCTGG
90327478 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
90327492 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
90327512 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
90327527 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
90327541 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:90327878 original size:27 final size:26
Alignment explanation
Indices: 90327848--90327909 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
90327838 AGTTATAATT
90327848 TTTAATATCAAAATTTATAGAGACCAA
1 TTTAATATCAAAA-TTATAGAGACCAA
* * * *
90327875 TTTAAAATCTAGATTATAGAGACCAG
1 TTTAATATCAAAATTATAGAGACCAA
90327901 TTTAATATC
1 TTTAATATC
90327910 TAGATTATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 20 0.67
27 10 0.33
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (26 bp):
TTTAATATCAAAATTATAGAGACCAA
Found at i:90327895 original size:26 final size:26
Alignment explanation
Indices: 90327862--90327917 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
90327852 ATATCAAAAT
90327862 TTATAGAGACCAATTTAAAATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
* *
90327888 TTATAGAGACCAGTTTAATATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
90327914 TTAT
1 TTAT
90327918 TGATTATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:90330035 original size:27 final size:27
Alignment explanation
Indices: 90329997--90330095 Score: 96
Period size: 27 Copynumber: 3.6 Consensus size: 27
90329987 AAATCTTTCT
90329997 AACTATGGACAAGAAACCGATTCACAA
1 AACTATGGACAAGAAACCGATTCACAA
* * *
90330024 AACTATGGACAAGAAACCAATAACATAAA
1 AACTATGGACAAGAAACCGAT-TCA-CAA
*
90330053 GGAACTA---ACCCAGAAACCGATTCACAA
1 --AACTATGGA-CAAGAAACCGATTCACAA
90330080 AACTATGGACAAGAAA
1 AACTATGGACAAGAAA
90330096 ATATACCTTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
25 5 0.09
27 28 0.50
28 6 0.11
29 12 0.21
31 5 0.09
ACGTcount: A:0.52, C:0.21, G:0.14, T:0.13
Consensus pattern (27 bp):
AACTATGGACAAGAAACCGATTCACAA
Found at i:90330528 original size:14 final size:14
Alignment explanation
Indices: 90330506--90330536 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
90330496 CACTGGAAAA
*
90330506 TCCGTAAAATATTT
1 TCCGGAAAATATTT
90330520 TCCGGAAAATATTT
1 TCCGGAAAATATTT
90330534 TCC
1 TCC
90330537 ACCAATCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (14 bp):
TCCGGAAAATATTT
Found at i:90335625 original size:14 final size:14
Alignment explanation
Indices: 90335600--90335639 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
90335590 GTAAACGGTA
*
90335600 AAAAAATAATAAAT
1 AAAATATAATAAAT
*
90335614 AAAATATGATAAAT
1 AAAATATAATAAAT
90335628 AAAATATAATAA
1 AAAATATAATAA
90335640 GTAATAAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (14 bp):
AAAATATAATAAAT
Found at i:90337451 original size:43 final size:43
Alignment explanation
Indices: 90337395--90337866 Score: 209
Period size: 43 Copynumber: 10.7 Consensus size: 43
90337385 CAAAATTTGA
* * *
90337395 TCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAG
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGATATTTAG
* * * *
90337438 CCTGCTCCACTCCTGCTCAGTGAAGATAAG-GCTGATGATTGGAA
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGAT-ATT-TAG
* * * ** *
90337482 TCTGCTCCA-TCGCCGGT-ACGTGGAGATAAGATTCACCAAAATTT-G
1 TCTGCTCCACTC-CTGCTCA-GTGAAGATAAGA--C-CTGATATTTAG
* *
90337527 ATCTGCTCCGCTCCTGCTCAGTGAAGATAAGACCTGGTATTTAG
1 -TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGATATTTAG
* * * * *
90337571 CCTGCTCCACTCCTACTCAGTGAAGATAAG-GCTGATGATTGGAA
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGAT-ATT-TAG
* ** *
90337615 TCTGCTCCA-TCACTGAT-ACGT-AGAGATAAGATTCACCAAAATTT-G
1 TCTGCTCCACTC-CTGCTCA-GTGA-AGATAAGA--C-CTGATATTTAG
* * * *
90337660 ATCTGCTCCGCTCTTGCTCAGCGAAGATAAGACCTGGTATTTAG
1 -TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGATATTTAG
* * * * *
90337704 CCTGCTCCACTCCTGCTTAGTGAAGATAAG-GCTGATGATTGGAA
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGAT-ATT-TAG
* * * ** *
90337748 TCTGCTCCA-TCGCCGAT-ACGT-AGAGATAATATTCACCAAAATTT-G
1 TCTGCTCCACTC-CTGCTCA-GTGA-AGATAAGA--C-CTGATATTTAG
* *
90337793 ATCTGCTCCGCTCCTGCTCAGCT-AAGATAAGACCTGGTATTTAG
1 -TCTGCTCCACTCCTGCTCAG-TGAAGATAAGACCTGATATTTAG
* *
90337837 CCTGCTCCACTCCTACTCAGTGAAGATAAG
1 TCTGCTCCACTCCTGCTCAGTGAAGATAAG
90337867 GCTGATGATA
Statistics
Matches: 309, Mismatches: 79, Indels: 82
0.66 0.17 0.17
Matches are distributed among these distances:
42 13 0.04
43 139 0.45
44 69 0.22
46 61 0.20
47 21 0.07
48 6 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (43 bp):
TCTGCTCCACTCCTGCTCAGTGAAGATAAGACCTGATATTTAG
Found at i:90337499 original size:133 final size:133
Alignment explanation
Indices: 90337262--90337875 Score: 1050
Period size: 133 Copynumber: 4.6 Consensus size: 133
90337252 TTGGAACTTT
* * * ** *
90337262 ATCTGCTCCGCTCTTGCTCAACGAAGATAAGATCTGCAATTTAGCCTGCT-CAATCCTGCTCAGT
1 ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
* *
90337326 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCACCAAAAT
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACGTAGAGATAAGATTCACCAAAAT
90337391 TTG
131 TTG
90337394 ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
1 ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
* *
90337459 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGGTACGTGGAGATAAGATTCACCAAAAT
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACGTAGAGATAAGATTCACCAAAAT
90337524 TTG
131 TTG
* *
90337527 ATCTGCTCCGCTCCTGCTCAGTGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTACTCAGT
1 ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
* *
90337592 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCACTGATACGTAGAGATAAGATTCACCAAAAT
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACGTAGAGATAAGATTCACCAAAAT
90337657 TTG
131 TTG
* *
90337660 ATCTGCTCCGCTCTTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTTAGT
1 ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
*
90337725 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACGTAGAGATAATATTCACCAAAAT
66 GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACGTAGAGATAAGATTCACCAAAAT
90337790 TTG
131 TTG
* *
90337793 ATCTGCTCCGCTCCTGCTCAGCTAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTACTCAGT
1 ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
90337858 GAAGATAAGGCTGATGAT
66 GAAGATAAGGCTGATGAT
90337876 ATCTGTAATC
Statistics
Matches: 458, Mismatches: 23, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
132 45 0.10
133 413 0.90
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (133 bp):
ATCTGCTCCGCTCCTGCTCAGCGAAGATAAGACCTGGTATTTAGCCTGCTCCACTCCTGCTCAGT
GAAGATAAGGCTGATGATTGGAATCTGCTCCATCGCCGATACGTAGAGATAAGATTCACCAAAAT
TTG
Found at i:90354032 original size:23 final size:21
Alignment explanation
Indices: 90354006--90354053 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
90353996 AGGCACTTTA
90354006 TGTGGCCTATTTCAGGCACCTCG
1 TGTGGCCTA--TCAGGCACCTCG
* *
90354029 TGTGTCGTATCAGGCACCTCG
1 TGTGGCCTATCAGGCACCTCG
90354050 TGTG
1 TGTG
90354054 TCGTTTTAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 16 0.70
23 7 0.30
ACGTcount: A:0.12, C:0.27, G:0.29, T:0.31
Consensus pattern (21 bp):
TGTGGCCTATCAGGCACCTCG
Found at i:90354043 original size:21 final size:21
Alignment explanation
Indices: 90354017--90354080 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
90354007 GTGGCCTATT
90354017 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
*
90354038 TCAGGCACCTCGTGTGTCGTT
1 TCAGGCACCTCGTGTGTCGTA
* * **
90354059 TTAGGCACTTTATGTGTCGTA
1 TCAGGCACCTCGTGTGTCGTA
90354080 T
1 T
90354081 ACTGATCAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.14, C:0.23, G:0.27, T:0.36
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCGTA
Found at i:90359505 original size:21 final size:21
Alignment explanation
Indices: 90359479--90359523 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
90359469 GCTGGCTCAT
*
90359479 CATGTTGTTCTGTGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
*
90359500 CATGTTTTTCTGGGACTCCAG
1 CATGTTGTTCTGGGACTCCAG
90359521 CAT
1 CAT
90359524 TTGATCCCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (21 bp):
CATGTTGTTCTGGGACTCCAG
Found at i:90361587 original size:14 final size:14
Alignment explanation
Indices: 90361553--90361579 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
90361543 ATCGACTTGT
90361553 ATATTTTATTTATC
1 ATATTTTATTTATC
90361567 ATATTTTATTTAT
1 ATATTTTATTTAT
90361580 TATTTTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (14 bp):
ATATTTTATTTATC
Found at i:90363157 original size:8 final size:8
Alignment explanation
Indices: 90363144--90363172 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
90363134 TTATGTTTAG
90363144 TATATTAT
1 TATATTAT
90363152 TATATTAT
1 TATATTAT
90363160 TATATTAT
1 TATATTAT
90363168 TATAT
1 TATAT
90363173 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:90363205 original size:5 final size:5
Alignment explanation
Indices: 90363195--90363245 Score: 95
Period size: 5 Copynumber: 10.4 Consensus size: 5
90363185 TTATGTTTTA
90363195 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT
90363244 AT
1 AT
90363246 AAACTAAAGA
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.09
5 41 0.91
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:90363281 original size:20 final size:20
Alignment explanation
Indices: 90363253--90363291 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
90363243 TATAAACTAA
* *
90363253 AGAAGCAAATGAAAGGAAAT
1 AGAAACAAATGAAACGAAAT
90363273 AGAAACAAATGAAACGAAA
1 AGAAACAAATGAAACGAAA
90363292 CAGAGAGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.64, C:0.08, G:0.21, T:0.08
Consensus pattern (20 bp):
AGAAACAAATGAAACGAAAT
Found at i:90364668 original size:29 final size:31
Alignment explanation
Indices: 90364635--90364722 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 31
90364625 TTGATTTAAT
* *
90364635 GTGCAATTGTATACAT-TAACTTTAATT-TG
1 GTGCAATTGTATACATGAAACTCTAATTGTG
*
90364664 GTGCAATTATATACATGAAACTCTAATTGTG
1 GTGCAATTGTATACATGAAACTCTAATTGTG
* * ** *
90364695 CTTCAATTGTATATTTGAAACTTTAATT
1 GTGCAATTGTATACATGAAACTCTAATT
90364723 TTGATTTAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
29 15 0.31
30 9 0.19
31 24 0.50
ACGTcount: A:0.33, C:0.11, G:0.12, T:0.43
Consensus pattern (31 bp):
GTGCAATTGTATACATGAAACTCTAATTGTG
Found at i:90364794 original size:27 final size:28
Alignment explanation
Indices: 90364750--90364802 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
90364740 ATTTAAAGAA
*
90364750 ATAAATATATCAATTTATTTTATATTGG
1 ATAAATATATCAATTTATGTTATATTGG
**
90364778 ATAAATATATTTA-TTATGTTATATT
1 ATAAATATATCAATTTATGTTATATT
90364803 AATAATTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 11 0.50
28 11 0.50
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (28 bp):
ATAAATATATCAATTTATGTTATATTGG
Found at i:90366015 original size:16 final size:15
Alignment explanation
Indices: 90365994--90366044 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 15
90365984 TTCAAAAATA
90365994 ATAATTATTATATATT
1 ATAA-TATTATATATT
90366010 ATAAT-TTATATATAT
1 ATAATATTATATAT-T
*
90366025 ATAACAATTTATATATT
1 ATAA-TA-TTATATATT
90366042 ATA
1 ATA
90366045 TGTCTTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
14 8 0.27
15 6 0.20
16 4 0.13
17 4 0.13
18 8 0.27
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAATATTATATATT
Found at i:90366025 original size:18 final size:18
Alignment explanation
Indices: 90365991--90366044 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
90365981 AGTTTCAAAA
90365991 ATAATAA-TTAT-TATAT
1 ATAATAATTTATATATAT
*
90366007 ATTATAATTTATATATAT
1 ATAATAATTTATATATAT
*
90366025 ATAACAATTTATATAT-T
1 ATAATAATTTATATATAT
90366042 ATA
1 ATA
90366045 TGTCTTTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
18 19 0.58
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
ATAATAATTTATATATAT
Done.