Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 287 of 295
Found at i:91118606 original size:26 final size:26
Alignment explanation
Indices: 91118554--91118613 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
91118544 CTACCCCTAA
** *
91118554 TAAAATTTTGACAATTTTATTCTTGG
1 TAAAATTTTGACAATTTTACCCATGG
* *
91118580 TAAAATTTTGACGATTTTGCCCATGG
1 TAAAATTTTGACAATTTTACCCATGG
91118606 TAAAATTT
1 TAAAATTT
91118614 CAAGAAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.45
Consensus pattern (26 bp):
TAAAATTTTGACAATTTTACCCATGG
Found at i:91118777 original size:6 final size:6
Alignment explanation
Indices: 91118763--91118796 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
91118753 CCAATGAATT
*
91118763 ATTTCC ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
91118797 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:91121629 original size:47 final size:47
Alignment explanation
Indices: 91121560--91121656 Score: 185
Period size: 47 Copynumber: 2.1 Consensus size: 47
91121550 TAGCTGTACC
91121560 ATTAAAAACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTG
1 ATTAAAAACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTG
*
91121607 ATTAAATACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTG
1 ATTAAAAACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTG
91121654 ATT
1 ATT
91121657 GAGTCTTTGA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (47 bp):
ATTAAAAACTTTCTTTAAAGATGCATTCTCATCAAAGTTCAAGCTTG
Found at i:91125088 original size:46 final size:46
Alignment explanation
Indices: 91125030--91125121 Score: 121
Period size: 46 Copynumber: 2.0 Consensus size: 46
91125020 ATTTCAATTG
* ** *
91125030 GTTTGCTCATTTTTTATTAGACTAAAGACATGTTTAAGTTCTTCTA
1 GTTTACTCATTTTCAATTAGACTAAAGACATGTTTAAGTTCGTCTA
* * *
91125076 GTTTACTCATTTTCAATTAGACTAAGGGCATGTTTAGGTTCGTCTA
1 GTTTACTCATTTTCAATTAGACTAAAGACATGTTTAAGTTCGTCTA
91125122 CTAAAATAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (46 bp):
GTTTACTCATTTTCAATTAGACTAAAGACATGTTTAAGTTCGTCTA
Found at i:91127031 original size:30 final size:30
Alignment explanation
Indices: 91126995--91127052 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
91126985 TGTTGATCAT
91126995 ATAGATTGCAAGTGTTTACTGACTTAACAC
1 ATAGATTGCAAGTGTTTACTGACTTAACAC
*
91127025 ATAGATTGCAAGTGTTTACTGAGTTAAC
1 ATAGATTGCAAGTGTTTACTGACTTAAC
91127053 CTAAAATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (30 bp):
ATAGATTGCAAGTGTTTACTGACTTAACAC
Found at i:91129939 original size:40 final size:40
Alignment explanation
Indices: 91129881--91129957 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
91129871 ACACACCATG
* * * *
91129881 TGGGGATAAGATCGACCCACCCAGCCCTACATACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
*
91129921 TGGGGATAAAATCAACCCATCCAACCCTACACACCAA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAA
91129958 AAGGTACCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.36, C:0.34, G:0.16, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:91141849 original size:42 final size:41
Alignment explanation
Indices: 91141695--91141850 Score: 138
Period size: 42 Copynumber: 3.7 Consensus size: 41
91141685 GGAGTTGTCG
* *
91141695 TGTAAGACCACGTCTGGGACGTTGGCGTCGATCTGAGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-T-TGA-TTACA
* * * * *
91141739 TGTAAGACCATGTCTGGGACATAGGCATTAC-ATTTGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCA-T-CGATTTGATTACA
* *
91141781 TGTAAGACC-CTGTCCGAGACAG-TGGCATCGATATTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT-TTGATTACA
91141823 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
91141851 TGTACAAGCT
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
40 1 0.01
41 4 0.05
42 52 0.59
43 3 0.03
44 24 0.27
45 3 0.03
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGATTACA
Found at i:91149967 original size:15 final size:16
Alignment explanation
Indices: 91149926--91149967 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
91149916 TTTTGAAAGG
91149926 TAATTTATA-ATATAT
1 TAATTTATATATATAT
*
91149941 TATTTTAT-TATATAT
1 TAATTTATATATATAT
91149956 ATAATTTATATA
1 -TAATTTATATA
91149968 AAAATAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 13 0.59
16 7 0.32
17 2 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (16 bp):
TAATTTATATATATAT
Found at i:91150284 original size:17 final size:16
Alignment explanation
Indices: 91150252--91150301 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
91150242 ATTTTTAGTC
* *
91150252 TATTTTTAAAAAAAAA
1 TATTTTCAATAAAAAA
91150268 TATTATTCAATAAAAAA
1 TATT-TTCAATAAAAAA
* *
91150285 TATTTTCCATAATAAA
1 TATTTTCAATAAAAAA
91150301 T
1 T
91150302 TGGATTAAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (16 bp):
TATTTTCAATAAAAAA
Found at i:91153283 original size:54 final size:53
Alignment explanation
Indices: 91153149--91153308 Score: 180
Period size: 54 Copynumber: 3.0 Consensus size: 53
91153139 ATTACATTTC
* *
91153149 TCTGATGCCATAGCCCAGCTATGGTCTTATACGG-ATCACTTGTATTACTT-TAA
1 TCTGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-T-TATCACTTGTTA
* * * * * *
91153202 TCCGAAGCCATAGCCTAGTTATAGTCTTATACGGAAATCACTTATCACTTGTTT
1 TCTGATGCCATAGCCCAGCTATGGTCTTATACGG-AATCACTTATCACTTGTTA
* *
91153256 TTTGATGTCATAGCCCAGCTATGGTCTTATACGGATATCACTTATCACTTGTT
1 TCTGATGCCATAGCCCAGCTATGGTCTTATACGGA-ATCACTTATCACTTGTT
91153309 GCCATGGTCC
Statistics
Matches: 88, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
53 37 0.42
54 46 0.52
55 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.37
Consensus pattern (53 bp):
TCTGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACTTATCACTTGTTA
Found at i:91156322 original size:21 final size:21
Alignment explanation
Indices: 91156282--91156322 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
91156272 AAACATATAC
*
91156282 TGAAATAAAAAAATACTCAAT
1 TGAAATAAAAAAATAATCAAT
91156303 TGAAATAAAAATAA-AATCAA
1 TGAAATAAAAA-AATAATCAA
91156323 AAGGACAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 16 0.89
22 2 0.11
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.22
Consensus pattern (21 bp):
TGAAATAAAAAAATAATCAAT
Found at i:91156961 original size:22 final size:21
Alignment explanation
Indices: 91156919--91156958 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91156909 AAAACAGACT
*
91156919 TTTAGCGGCCTTTTTTAGGCC
1 TTTAGCGGCCTTTTTAAGGCC
91156940 TTTAGCGGCGC-TTTTAAGG
1 TTTAGCGGC-CTTTTTAAGG
91156959 GCCACTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.12, C:0.20, G:0.28, T:0.40
Consensus pattern (21 bp):
TTTAGCGGCCTTTTTAAGGCC
Found at i:91157100 original size:43 final size:43
Alignment explanation
Indices: 91157048--91157152 Score: 183
Period size: 43 Copynumber: 2.4 Consensus size: 43
91157038 TTTATTTGAA
*
91157048 AAAATGCCGCTAAAGGTCAGGACCTTTAGCGACGCTTTTCCCG
1 AAAACGCCGCTAAAGGTCAGGACCTTTAGCGACGCTTTTCCCG
*
91157091 AAAACGCCGCTAAAGGTCAGGACCTTTAGCGGCGCTTTTCCCG
1 AAAACGCCGCTAAAGGTCAGGACCTTTAGCGACGCTTTTCCCG
*
91157134 CAAACGCCGCTAAAGGTCA
1 AAAACGCCGCTAAAGGTCA
91157153 TAAAAATTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (43 bp):
AAAACGCCGCTAAAGGTCAGGACCTTTAGCGACGCTTTTCCCG
Found at i:91159828 original size:16 final size:15
Alignment explanation
Indices: 91159803--91159832 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
91159793 GAGATTAAGT
91159803 TAATCATATTAATTG
1 TAATCATATTAATTG
91159818 TAATACATATTAATT
1 TAAT-CATATTAATT
91159833 ACATTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (15 bp):
TAATCATATTAATTG
Found at i:91159840 original size:10 final size:10
Alignment explanation
Indices: 91159821--91159867 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
91159811 TTAATTGTAA
91159821 TACATATTAAT
1 TACAT-TTAAT
91159832 TACATTTAAT
1 TACATTTAAT
91159842 TACATTT-A-
1 TACATTTAAT
91159850 -ACATTTAAT
1 TACATTTAAT
91159859 TACATTTAA
1 TACATTTAA
91159868 CAGAGGATCA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
7 6 0.18
8 1 0.03
9 1 0.03
10 20 0.61
11 5 0.15
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.47
Consensus pattern (10 bp):
TACATTTAAT
Found at i:91159855 original size:17 final size:17
Alignment explanation
Indices: 91159833--91159869 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
91159823 CATATTAATT
91159833 ACATTTAATTACATTTA
1 ACATTTAATTACATTTA
91159850 ACATTTAATTACATTTA
1 ACATTTAATTACATTTA
91159867 ACA
1 ACA
91159870 GAGGATCAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (17 bp):
ACATTTAATTACATTTA
Found at i:91162570 original size:16 final size:15
Alignment explanation
Indices: 91162551--91162599 Score: 82
Period size: 14 Copynumber: 3.3 Consensus size: 15
91162541 AATATTAAAA
91162551 TTTTAAGTTTTTAAAT
1 TTTTAAGTTTTT-AAT
91162567 TTTTAAGTTTTTAAT
1 TTTTAAGTTTTTAAT
91162582 TTTTAA-TTTTTAAT
1 TTTTAAGTTTTTAAT
91162596 TTTT
1 TTTT
91162600 CAATTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.36
15 9 0.27
16 12 0.36
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (15 bp):
TTTTAAGTTTTTAAT
Found at i:91162591 original size:6 final size:7
Alignment explanation
Indices: 91162551--91162607 Score: 78
Period size: 8 Copynumber: 7.6 Consensus size: 7
91162541 AATATTAAAA
91162551 TTTTAAGT
1 TTTTAA-T
91162559 TTTTAAAT
1 TTTT-AAT
91162567 TTTTAAGT
1 TTTTAA-T
91162575 TTTTAAT
1 TTTTAAT
91162582 TTTTAAT
1 TTTTAAT
91162589 TTTTAAT
1 TTTTAAT
91162596 TTTTCAAT
1 TTTT-AAT
91162604 TTTT
1 TTTT
91162608 TTGAAGAATT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
7 21 0.46
8 23 0.50
9 2 0.04
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (7 bp):
TTTTAAT
Found at i:91162599 original size:15 final size:15
Alignment explanation
Indices: 91162551--91162608 Score: 73
Period size: 15 Copynumber: 3.8 Consensus size: 15
91162541 AATATTAAAA
*
91162551 TTTTAAGTTTTTAAAT
1 TTTTAA-TTTTTTAAT
*
91162567 TTTTAAGTTTTTAAT
1 TTTTAATTTTTTAAT
91162582 TTTTAA-TTTTTAAT
1 TTTTAATTTTTTAAT
91162596 TTTTCAATTTTTT
1 TTTT-AATTTTTT
91162609 TGAAGAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
14 12 0.32
15 15 0.39
16 11 0.29
ACGTcount: A:0.26, C:0.02, G:0.03, T:0.69
Consensus pattern (15 bp):
TTTTAATTTTTTAAT
Found at i:91163206 original size:14 final size:14
Alignment explanation
Indices: 91163170--91163222 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 14
91163160 CTAACTAATC
*
91163170 TAAACCCTAAACTCT
1 TAAACCCTAAAC-AT
*
91163185 TAATCCCTAAACAT
1 TAAACCCTAAACAT
91163199 TAAACCCTAAAACA-
1 TAAACCCT-AAACAT
*
91163213 TAAATCCTAA
1 TAAACCCTAA
91163223 CCCATAAACC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 2 0.06
14 15 0.45
15 16 0.48
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACAT
Found at i:91163255 original size:21 final size:21
Alignment explanation
Indices: 91163220--91163285 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
91163210 ACATAAATCC
* *
91163220 TAACCCATAAACCCCTCACCCT
1 TAACCC-TTAACCCCTAACCCT
91163242 TAACCCTTAACCCCTAACACC-
1 TAACCCTTAACCCCTAAC-CCT
91163263 TAA-CCTTAAACCCC-AACCCT
1 TAACCCTT-AACCCCTAACCCT
91163283 TAA
1 TAA
91163286 ACCACCTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
19 2 0.05
20 10 0.26
21 19 0.49
22 8 0.21
ACGTcount: A:0.35, C:0.45, G:0.00, T:0.20
Consensus pattern (21 bp):
TAACCCTTAACCCCTAACCCT
Found at i:91163288 original size:21 final size:22
Alignment explanation
Indices: 91163227--91163288 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
91163217 TCCTAACCCA
* *
91163227 TAAACCCCTCACCCTTAACCCT
1 TAAACCCCTAACCCTTAAACCT
91163249 T-AACCCCTAACACC-T-AACCT
1 TAAACCCCTAAC-CCTTAAACCT
91163269 TAAACCCC-AACCCTTAAACC
1 TAAACCCCTAACCCTTAAACC
91163289 ACCTTTAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 2 0.06
20 9 0.26
21 20 0.59
22 3 0.09
ACGTcount: A:0.34, C:0.47, G:0.00, T:0.19
Consensus pattern (22 bp):
TAAACCCCTAACCCTTAAACCT
Found at i:91163335 original size:15 final size:15
Alignment explanation
Indices: 91163310--91163352 Score: 61
Period size: 14 Copynumber: 2.9 Consensus size: 15
91163300 ATAGTTAACT
91163310 CATAAACCTTAAACC
1 CATAAACCTTAAACC
* *
91163325 CATATAGCTTAAA-C
1 CATAAACCTTAAACC
91163339 CATAAACCTTAAAC
1 CATAAACCTTAAAC
91163353 TATAATGATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.47, C:0.28, G:0.02, T:0.23
Consensus pattern (15 bp):
CATAAACCTTAAACC
Found at i:91163349 original size:14 final size:14
Alignment explanation
Indices: 91163310--91163357 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
91163300 ATAGTTAACT
91163310 CATAAACCTTAAACC
1 CATAAACCTTAAA-C
* *
91163325 CATATAGCTTAAAC
1 CATAAACCTTAAAC
91163339 CATAAACCTTAAAC
1 CATAAACCTTAAAC
*
91163353 TATAA
1 CATAA
91163358 TGATAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.48, C:0.25, G:0.02, T:0.25
Consensus pattern (14 bp):
CATAAACCTTAAAC
Found at i:91163925 original size:124 final size:122
Alignment explanation
Indices: 91163769--91164133 Score: 446
Period size: 124 Copynumber: 3.0 Consensus size: 122
91163759 GTTATATGAC
* *
91163769 TTTTAGCGGCATTTTACCAAAAGCGCCACTAATGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGC
*
91163834 GCCGCTAATGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCCTAATGCTCTGG
66 GCCGCTATTGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGCGCCG-CTAATGCTCTGG
* * * * *
91163892 TTTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCACCGGTTTCTAGCGGTGTTTTACCAAAAG
1 -TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCCGTTTTTAGCGGCGTTTTACCAAAAG
* ** * * *
91163957 CGCTGCTATTGCTCTGGTTTCTAGAGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
65 CGCCGCTATTGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
* * * * * * * * *
91164015 CTTTAGCAGCGTTTTACCAAAAACGCCGCTATTG-TTCTGTTTTTAGCGGCATTTTAACAAAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCCGTTTTTAGCGGCGTTTT-ACCAAAAG
* * * *
91164079 CGCCGCTATTGCT-CTGTTTTTAGCGGCGTTTTACCAAAAACGCCGTTATTGCTCT
65 CGCCGCTATTGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT
91164134 ATGTTTTATA
Statistics
Matches: 206, Mismatches: 34, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
121 51 0.25
122 47 0.23
123 11 0.05
124 97 0.47
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (122 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGC
GCCGCTATTGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGG
Found at i:91164083 original size:81 final size:81
Alignment explanation
Indices: 91163769--91164133 Score: 444
Period size: 81 Copynumber: 4.5 Consensus size: 81
91163759 GTTATATGAC
* * * **
91163769 TTTTAGCGGCATTTTACCAAAAGCGCCACTAATGCTCCCGTTTTTAGCGGCGTTTTACCAAAAGC
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
*
91163834 GCCGCTAATGCTCCCGT
66 GCCGCTAATGCT-CCGG
* *
91163851 TTTTAGCGGCGTTTTACCAAAAGCGCCGCCTAATGCTCTGGTTTTTAACGGCGTTTTACCAAAAG
1 TTTTAGCGGCGTTTTACCAAAAGCGCCG-CTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAG
*
91163916 CGCCGCTAATGCACCGG
65 CGCCGCTAATGCTCCGG
* * * *
91163933 TTTCTAGCGGTGTTTTACCAAAAGCGCTGCTATTGCTCTGGTTTCTAGAGGCGTTTTACCAAAAG
1 TTT-TAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAG
* *
91163998 CGCCGCTATTGCTCTGG
65 CGCCGCTAATGCTCCGG
* * * * * * *
91164015 CTTTAGCAGCGTTTTACCAAAAACGCCGCTATTGTTCT-GTTTTTAGCGGCATTTTAACAAAAAA
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTT-ACCAAAAG
* * *
91164079 CGCCGCTATTGCTCTGT
65 CGCCGCTAATGCTCCGG
* *
91164096 TTTTAGCGGCGTTTTACCAAAAACGCCGTTATTGCTCT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
91164134 ATGTTTTATA
Statistics
Matches: 248, Mismatches: 32, Indels: 7
0.86 0.11 0.02
Matches are distributed among these distances:
80 14 0.06
81 86 0.35
82 80 0.32
83 68 0.27
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (81 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGGTTTTTAGCGGCGTTTTACCAAAAGC
GCCGCTAATGCTCCGG
Found at i:91164141 original size:41 final size:40
Alignment explanation
Indices: 91163769--91164133 Score: 424
Period size: 41 Copynumber: 8.9 Consensus size: 40
91163759 GTTATATGAC
* * * * *
91163769 TTTTAGCGGCATTTTACCAAAAGCGCCACTAATGCTCCCGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCT-CTGG
* * *
91163810 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCCCGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCT-CTGG
*
91163851 TTTTAGCGGCGTTTTACCAAAAGCGCCGCCTAATGCTCTGG
1 TTTTAGCGGCGTTTTACCAAAAGCGCCG-CTATTGCTCTGG
* * * *
91163892 TTTTTAACGGCGTTTTACCAAAAGCGCCGCTAATGCACCGG
1 -TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
* *
91163933 TTTCTAGCGGTGTTTTACCAAAAGCGCTGCTATTGCTCTGG
1 TTT-TAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
*
91163974 TTTCTAGAGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
1 TTT-TAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
* * * * *
91164015 CTTTAGCAGCGTTTTACCAAAAACGCCGCTATTGTTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
* * * *
91164055 TTTTAGCGGCATTTTAACAAAAAACGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTT-ACCAAAAGCGCCGCTATTGCTCTGG
* *
91164096 TTTTAGCGGCGTTTTACCAAAAACGCCGTTATTGCTCT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCT
91164134 ATGTTTTATA
Statistics
Matches: 290, Mismatches: 30, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
40 68 0.23
41 187 0.64
42 35 0.12
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTATTGCTCTGG
Found at i:91164380 original size:50 final size:50
Alignment explanation
Indices: 91164305--91164405 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
91164295 TCATTGATGT
91164305 GTATTCAGTATATGAGTGT-AAAAAAAATCCCCATACATTGTTTACAATCG
1 GTATTCAGTATATGAGTGTAAAAAAAAATCCCCA-ACATTGTTTACAATCG
91164355 GTATTCAGTATATGAGTGTAAAAAAAAATCCCCAACATTGTTTACAATCG
1 GTATTCAGTATATGAGTGTAAAAAAAAATCCCCAACATTGTTTACAATCG
91164405 G
1 G
91164406 CTTTATATAG
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 36 0.72
51 14 0.28
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (50 bp):
GTATTCAGTATATGAGTGTAAAAAAAAATCCCCAACATTGTTTACAATCG
Found at i:91168249 original size:12 final size:13
Alignment explanation
Indices: 91168231--91168285 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
91168221 TAAAAATATG
91168231 ATATTTAATAATA
1 ATATTTAATAATA
91168244 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
91168255 GTATTTAATATACA
1 ATATTTAATA-ATA
*
91168269 ATATATAATATATA
1 ATATTTAATA-ATA
91168283 ATA
1 ATA
91168286 ACAAAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:91168589 original size:16 final size:16
Alignment explanation
Indices: 91168557--91168629 Score: 64
Period size: 16 Copynumber: 4.8 Consensus size: 16
91168547 CAATATAATG
*
91168557 AATAATATAAAACATA
1 AATAATATAATACATA
*
91168573 AATAATATAATAGATA
1 AATAATATAATACATA
*
91168589 ATATACTAT-ATACAT-
1 A-ATAATATAATACATA
* *
91168604 AAT-ATAGAATA-AAA
1 AATAATATAATACATA
91168618 AATAATATAATA
1 AATAATATAATA
91168630 AGTAATATAT
Statistics
Matches: 45, Mismatches: 8, Indels: 9
0.73 0.13 0.15
Matches are distributed among these distances:
13 3 0.07
14 8 0.18
15 8 0.18
16 20 0.44
17 6 0.13
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.30
Consensus pattern (16 bp):
AATAATATAATACATA
Found at i:91168639 original size:14 final size:14
Alignment explanation
Indices: 91168577--91168644 Score: 50
Period size: 14 Copynumber: 4.6 Consensus size: 14
91168567 AACATAAATA
91168577 ATATAAT-AGATAAT
1 ATATAATAAG-TAAT
91168591 ATACTATATACA-TAAT
1 ATA-TA-ATA-AGTAAT
* **
91168607 ATAGAATAAAAAAT
1 ATATAATAAGTAAT
91168621 AATATAATAAGTAAT
1 -ATATAATAAGTAAT
91168636 ATATAATAA
1 ATATAATAA
91168645 AAATAAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
13 1 0.02
14 18 0.42
15 14 0.33
16 9 0.21
18 1 0.02
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.32
Consensus pattern (14 bp):
ATATAATAAGTAAT
Found at i:91168659 original size:29 final size:28
Alignment explanation
Indices: 91168596--91168697 Score: 75
Period size: 27 Copynumber: 3.5 Consensus size: 28
91168586 ATAATATACT
* *
91168596 ATATACATAATATAGAATAAAAAATAATATA
1 ATATA-ATAATATATAAT-AAAAATAA-AAA
*
91168627 ATA-AGTAATATATAATAAAAATAAAAA
1 ATATAATAATATATAATAAAAATAAAAA
* * *
91168654 ATATAATAA-ATGTTATATAAATAAATATA
1 ATATAATAATATATAATAAAAATAAA-A-A
91168683 ATATAA-ATATATATA
1 ATATAATA-ATATATA
91168698 GGAAAGTAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
27 18 0.32
28 14 0.25
29 18 0.32
30 4 0.07
31 3 0.05
ACGTcount: A:0.64, C:0.01, G:0.03, T:0.32
Consensus pattern (28 bp):
ATATAATAATATATAATAAAAATAAAAA
Found at i:91168662 original size:32 final size:33
Alignment explanation
Indices: 91168616--91168693 Score: 88
Period size: 33 Copynumber: 2.3 Consensus size: 33
91168606 TATAGAATAA
91168616 AAAATAATATAAT-AA-GTAATATATAATAAAAAT
1 AAAA-AATATAATAAATGTAATATA-AATAAAAAT
* *
91168649 AAAAAATATAATAAATGTTATATAAATAAATAT
1 AAAAAATATAATAAATGTAATATAAATAAAAAT
91168682 AATATAAATATA
1 AA-A-AAATATA
91168694 TATAGGAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
32 8 0.21
33 16 0.41
34 8 0.21
35 7 0.18
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (33 bp):
AAAAAATATAATAAATGTAATATAAATAAAAAT
Found at i:91168676 original size:15 final size:15
Alignment explanation
Indices: 91168602--91168697 Score: 72
Period size: 15 Copynumber: 6.2 Consensus size: 15
91168592 TACTATATAC
*
91168602 ATAATATAGAATAAAAA
1 ATAATATA-AAT-AAAT
91168619 ATAATATAATAAGTAATAT
1 ATAATAT-A-AA-TAA-AT
*
91168638 ATAATAAAAATAAA-
1 ATAATATAAATAAAT
91168652 A-AATAT-AATAAAT
1 ATAATATAAATAAAT
* *
91168665 GTTATATAAATAAAT
1 ATAATATAAATAAAT
*
91168680 ATAATATAAATATAT
1 ATAATATAAATAAAT
91168695 ATA
1 ATA
91168698 GGAAAGTAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
12 6 0.09
13 4 0.06
14 5 0.08
15 23 0.36
16 3 0.05
17 9 0.14
18 6 0.09
19 8 0.12
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
ATAATATAAATAAAT
Found at i:91168765 original size:24 final size:23
Alignment explanation
Indices: 91168734--91168791 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 23
91168724 ATTTTAATAT
91168734 AAAT-ATATAAATAGTA-TTTTTA
1 AAATAATATAAATA-TACTTTTTA
**
91168756 ATAATAATATATGTATACTTTTTA
1 A-AATAATATAAATATACTTTTTA
91168780 AAATAA-ATAAAT
1 AAATAATATAAAT
91168792 TATATAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
22 5 0.17
23 10 0.34
24 14 0.48
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.43
Consensus pattern (23 bp):
AAATAATATAAATATACTTTTTA
Found at i:91170354 original size:87 final size:87
Alignment explanation
Indices: 91170232--91170535 Score: 246
Period size: 87 Copynumber: 3.5 Consensus size: 87
91170222 ACAATACAGA
* * ** *
91170232 GATGCCAAATCATCTTAGATTTGCTTCAGCGTAAACA-CGTGAAAGCCAAATCTGCTATGTCTTC
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATC-TGAAAGTCAAATCTGCTATGTCTTC
91170296 GATTTGTTCCTTATAAACACAAG
65 GATTTGTTCCTTATAAACACAAG
* * * *
91170319 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGT-GTC-
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTCG
* * ** ***
91170382 -TGCT-TTCCGTCGAAA-TGGA-
66 AT-TTGTTCCTTATAAACACAAG
* ** * *
91170401 GATGCCAGATCTGTTATCTTGGATCTGCTTTGGTGTGAGAACATCCGAAAGTCAAATCTGCTATG
1 GATGCCAAATC----ATCTTGGATCTGCTTCAGTAT-A-AACATCTGAAAGTCAAATCTGCTATG
* * *
91170466 TCTTTGATTTGCTCCTTGTAAACACAAG
60 TCTTCGATTTGTTCCTTATAAACACAAG
* *
91170494 AATGCCAAATCATCTTGGATCTACTTCAGTAT-AACATCTGAA
1 GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAA
91170536 GGTTAGACCT
Statistics
Matches: 162, Mismatches: 41, Indels: 29
0.70 0.18 0.12
Matches are distributed among these distances:
82 10 0.06
83 1 0.01
84 9 0.06
85 1 0.01
86 29 0.18
87 51 0.31
88 24 0.15
89 18 0.11
90 1 0.01
91 8 0.05
92 1 0.01
93 9 0.06
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (87 bp):
GATGCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAAGTCAAATCTGCTATGTCTTCG
ATTTGTTCCTTATAAACACAAG
Found at i:91178641 original size:16 final size:14
Alignment explanation
Indices: 91178600--91178652 Score: 56
Period size: 14 Copynumber: 3.7 Consensus size: 14
91178590 TCTATAACTT
*
91178600 TGAATGCAAACG-A
1 TGAATGCAAATGCA
91178613 TGCAATG-AAATGCTA
1 TG-AATGCAAATGC-A
91178628 TGAGATGCAAATGCA
1 TGA-ATGCAAATGCA
91178643 TGAATGCAAA
1 TGAATGCAAA
91178653 AAGTACATCG
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
13 6 0.18
14 12 0.35
15 10 0.29
16 6 0.18
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (14 bp):
TGAATGCAAATGCA
Found at i:91182446 original size:12 final size:13
Alignment explanation
Indices: 91182428--91182482 Score: 51
Period size: 14 Copynumber: 4.2 Consensus size: 13
91182418 TAAAAATATG
91182428 ATATTTAATAATA
1 ATATTTAATAATA
91182441 AT-TTTAA-AATA
1 ATATTTAATAATA
* *
91182452 GTATTTAATATACA
1 ATATTTAATA-ATA
*
91182466 ATATATAATATATA
1 ATATTTAATA-ATA
91182480 ATA
1 ATA
91182483 ACAAAAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
11 5 0.15
12 10 0.29
13 3 0.09
14 16 0.47
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATTTAATAATA
Found at i:91182826 original size:14 final size:13
Alignment explanation
Indices: 91182737--91182836 Score: 60
Period size: 14 Copynumber: 7.1 Consensus size: 13
91182727 ATTATAAACA
91182737 ATATAATGAATAAT
1 ATATAAT-AATAAT
91182751 ATA-AA-ACATAAAT
1 ATATAATA-AT-AAT
91182764 AATATAATAGATAAT
1 -ATATAATA-ATAAT
*
91182779 ATACGATATACATAAT
1 ATA-TA-ATA-ATAAT
* *
91182795 ATAGAATAAAAAT
1 ATATAATAATAAT
91182808 AATATAATAAGTAAT
1 -ATATAATAA-TAAT
*
91182823 ATATAATAAAAAT
1 ATATAATAATAAT
91182836 A
1 A
91182837 AAAAATATAA
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
11 1 0.01
12 2 0.03
13 13 0.19
14 29 0.41
15 11 0.16
16 14 0.20
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (13 bp):
ATATAATAATAAT
Found at i:91182912 original size:26 final size:26
Alignment explanation
Indices: 91182876--91182936 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
91182866 TATAGGAAAG
91182876 TAATATGATAAATAAAATTTTTAAT-A
1 TAATAT-ATAAATAAAATTTTTAATAA
**
91182902 TAAATATATAAATAGTATTTTTAATAA
1 T-AATATATAAATAAAATTTTTAATAA
91182929 TAATATAT
1 TAATATAT
91182937 GTATAGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 24 0.77
27 7 0.23
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (26 bp):
TAATATATAAATAAAATTTTTAATAA
Found at i:91182957 original size:24 final size:25
Alignment explanation
Indices: 91182877--91182957 Score: 76
Period size: 26 Copynumber: 3.2 Consensus size: 25
91182867 ATAGGAAAGT
* *
91182877 AATATGATAAATAAAATTTTTAATATA
1 AATAT-ATAAAT-AGATTTTTAAAATA
91182904 AATATATAAATAGTATTTTTAATAAT-
1 AATATATAAATAG-ATTTTTAA-AATA
**
91182930 AATATATGTATAG-TTTTTAAAATA
1 AATATATAAATAGATTTTTAAAATA
91182954 AATA
1 AATA
91182958 AGTTATATAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
23 3 0.06
24 11 0.23
25 1 0.02
26 25 0.53
27 7 0.15
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (25 bp):
AATATATAAATAGATTTTTAAAATA
Found at i:91182964 original size:23 final size:24
Alignment explanation
Indices: 91182893--91182960 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
91182883 ATAAATAAAA
* *
91182893 TTTTTAATATAAATATATAAATAGTA-
1 TTTTTAATA-ATA-ATATAAGTA-TAG
*
91182919 TTTTTAATAATAATATATGTATAG
1 TTTTTAATAATAATATAAGTATAG
91182943 TTTTTAA-AATAA-ATAAGT
1 TTTTTAATAATAATATAAGT
91182961 TATATAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
22 5 0.14
23 7 0.19
24 14 0.38
25 2 0.05
26 9 0.24
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (24 bp):
TTTTTAATAATAATATAAGTATAG
Found at i:91216180 original size:39 final size:40
Alignment explanation
Indices: 91216108--91216183 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 40
91216098 AATGGTTTTC
* *
91216108 TATATTGTAGGAAGTTAGAGGACGAATAAGAGTAGTAGTT
1 TATATTATAGGAAGTTAGAGGACAAATAAGAGTAGTAGTT
* *
91216148 TATATTATAGGAAG-TAGAGGGCAAATAGGAGTAGTA
1 TATATTATAGGAAGTTAGAGGACAAATAAGAGTAGTA
91216184 CCACAAACCA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
39 19 0.59
40 13 0.41
ACGTcount: A:0.39, C:0.03, G:0.30, T:0.28
Consensus pattern (40 bp):
TATATTATAGGAAGTTAGAGGACAAATAAGAGTAGTAGTT
Found at i:91217750 original size:46 final size:46
Alignment explanation
Indices: 91217683--91217854 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
91217673 AACCCGCTCC
* *
91217683 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCG
1 TAAGTAAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCG
*
91217729 TAAGTAAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTAAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCG
* * * **
91217777 TCA-CAAACTCGGACTCAACCCAACGAGTTCGAACATTCGCATCCG
1 TAAGTAAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCG
*
91217822 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTAAACTCGGACTCAACTCAACGAGTTCGG
91217855 ATGCTCAACC
Statistics
Matches: 103, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 56 0.54
47 26 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTAAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCATCCG
Found at i:91217801 original size:93 final size:93
Alignment explanation
Indices: 91217689--91217858 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
91217679 CTCCTAAGTG
* **
91217689 AACTCGGACTCAACTCAACGAGCTCGGGCATTCGCATCCGTAAGTAAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACCCAACGAGCTCGAACATTCGCATCCGTAAGTAAACTCGGACTCAACTCAAC
91217754 GAGTTCGGATGCCTAGTTACATCTCACA
66 GAGTTCGGATGCCTAGTTACATCTCACA
* *
91217782 AACTCGGACTCAACCCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACCCAACGAGCTCGAACATTCGCATCCGTAAGTAAACTCGGACTCAACTCAAC
91217847 GAGTTCGGATGC
66 GAGTTCGGATGC
91217859 TCAACCATCC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
AACTCGGACTCAACCCAACGAGCTCGAACATTCGCATCCGTAAGTAAACTCGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCACA
Found at i:91224123 original size:26 final size:26
Alignment explanation
Indices: 91224053--91224129 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
91224043 ACATATTTTC
**
91224053 TCAAAATTTTACTAAGAATAAAATCA
1 TCAAAATTTTACTAAGGGTAAAATCA
* * *
91224079 TCAAAAAATTTA-TCGAGGGTAAAATCG
1 TC-AAAATTTTACT-AAGGGTAAAATCA
*
91224106 TCAAAATTTTACTAAGGGCAAAAT
1 TCAAAATTTTACTAAGGGTAAAAT
91224130 AGAGATGAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
26 20 0.50
27 20 0.50
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.29
Consensus pattern (26 bp):
TCAAAATTTTACTAAGGGTAAAATCA
Found at i:91224182 original size:20 final size:20
Alignment explanation
Indices: 91224138--91224182 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
91224128 ATAGAGATGA
*
91224138 AAAAATTTAGTGTAGAATAT
1 AAAAATTTAGTGTAGAAAAT
* * *
91224158 TAAAATTTATTTTAGAAAAT
1 AAAAATTTAGTGTAGAAAAT
91224178 AAAAA
1 AAAAA
91224183 AATCAAATCG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (20 bp):
AAAAATTTAGTGTAGAAAAT
Found at i:91230358 original size:25 final size:25
Alignment explanation
Indices: 91230324--91230375 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
91230314 CTTGAATAAA
91230324 CACTTCTCCATTTCCAGCAATTTAT
1 CACTTCTCCATTTCCAGCAATTTAT
91230349 CACTTCTCCATTTCCAGCAATTTAT
1 CACTTCTCCATTTCCAGCAATTTAT
91230374 CA
1 CA
91230376 TTCACACTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.25, C:0.33, G:0.04, T:0.38
Consensus pattern (25 bp):
CACTTCTCCATTTCCAGCAATTTAT
Found at i:91249686 original size:38 final size:38
Alignment explanation
Indices: 91249578--91249743 Score: 154
Period size: 38 Copynumber: 4.3 Consensus size: 38
91249568 ATTTGATGTG
* **
91249578 TATCCGGGCTTAAAGACCCGCAGGCTTTA-TGCTGAAATTA
1 TATCCGGG-TTAAA-TCCCGCAGGC-TTAGTGCTGGTATTA
* *
91249618 TATCCGTGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
*
91249656 TATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
* * * * * *
91249694 TATCTGAGTTTAAAGTCCTGTAGGCTTCGTGCTGGTGTTA
1 TATCCG-GGTTAAA-TCCCGCAGGCTTAGTGCTGGTATTA
* *
91249734 TGTTCGGGTT
1 TATCCGGGTT
91249744 TTATACCTCG
Statistics
Matches: 104, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
37 2 0.02
38 58 0.56
39 14 0.13
40 30 0.29
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
Found at i:91251597 original size:28 final size:27
Alignment explanation
Indices: 91251496--91251596 Score: 85
Period size: 29 Copynumber: 3.6 Consensus size: 27
91251486 ATGATTAGAG
* *
91251496 GCACTGTGTGTGCAAATTCTTTTAACCGA
1 GCACTATGTGTGCGAATTC--TTAACCGA
** **
91251525 GCACTATGTGTGCGAAATTGGTAATTGA
1 GCACTATGTGTGCG-AATTCTTAACCGA
* *
91251553 GGCACTGTGTGTGCGAGTTCTTCAACCGA
1 -GCACTATGTGTGCGAATTCTT-AACCGA
91251582 GCACTATGTGTGCGA
1 GCACTATGTGTGCGA
91251597 GATCGGTCAG
Statistics
Matches: 56, Mismatches: 13, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
28 23 0.41
29 29 0.52
30 4 0.07
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTATGTGTGCGAATTCTTAACCGA
Found at i:91256030 original size:40 final size:37
Alignment explanation
Indices: 91255902--91256038 Score: 157
Period size: 38 Copynumber: 3.6 Consensus size: 37
91255892 TAAAGACCCA
** *
91255902 CAGGCTTTATGCTGGAATTATATCCGTGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATCCG-GTTAAATCCCG
91255940 CAGGCTTCGTGCTGGTATTATATCCGGGTTAAATCCCG
1 CAGGCTTCGTGCTGGTATTATATCC-GGTTAAATCCCG
* * *
91255978 CAGGCCTAGTGCTGGTATTATATCTGAGTTTAAAGTCCCG
1 CAGGCTTCGTGCTGGTATTATATCCG-G-TTAAA-TCCCG
* *
91256018 TAGGCTTCGTGCTGGTGTTAT
1 CAGGCTTCGTGCTGGTATTAT
91256039 GTTCGGGTTT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 56 0.66
39 6 0.07
40 22 0.26
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (37 bp):
CAGGCTTCGTGCTGGTATTATATCCGGTTAAATCCCG
Found at i:91266766 original size:68 final size:71
Alignment explanation
Indices: 91266670--91266807 Score: 196
Period size: 68 Copynumber: 2.0 Consensus size: 71
91266660 TTTAATAATT
* *
91266670 TTAATATTAAATTTAATTTAATTCTTATCTTGATAG-T-AT-TT-TATTAATTTAATATTAAATT
1 TTAATATTAAATTTAATTTAATTCTTATCTT-ATAGATAATATTCTATTAATTTAATACTAAAAT
91266731 GATTATC
65 GATTATC
91266738 TTAATATTAAATTTAATTTAATAT-TTATCTTATAGATAAATATTCTATTAATTTAATACTAAAA
1 TTAATATTAAATTTAATTTAAT-TCTTATCTTATAGAT-AATATTCTATTAATTTAATACTAAAA
91266802 TGATTA
64 TGATTA
91266808 AGTTTAACAA
Statistics
Matches: 62, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
67 4 0.06
68 30 0.48
69 1 0.02
70 2 0.03
71 2 0.03
72 23 0.37
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (71 bp):
TTAATATTAAATTTAATTTAATTCTTATCTTATAGATAATATTCTATTAATTTAATACTAAAATG
ATTATC
Found at i:91274013 original size:40 final size:39
Alignment explanation
Indices: 91273969--91274087 Score: 104
Period size: 40 Copynumber: 3.1 Consensus size: 39
91273959 AGACGCAATA
*
91273969 TTAAGTCAAGTGAACTGTTAAAATATCGAAGGTTGCGATC
1 TTAAGTCAA-TGAACTGTTAAAATATCGAAGGTCGCGATC
* * *
91274009 TTAAGTCGAACGAACCG-TAAAA-AT-GACA-GTCGCGATA
1 TTAAGTC-AATGAACTGTTAAAATATCGA-AGGTCGCGATC
* *
91274046 TT-AGATCAATTGAACTATTAAAATATCGAAGGTCGCAATC
1 TTAAG-TCAA-TGAACTGTTAAAATATCGAAGGTCGCGATC
91274086 TT
1 TT
91274088 TAATCGAGCG
Statistics
Matches: 62, Mismatches: 9, Indels: 16
0.71 0.10 0.18
Matches are distributed among these distances:
36 4 0.06
37 17 0.27
38 8 0.13
39 8 0.13
40 23 0.37
41 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (39 bp):
TTAAGTCAATGAACTGTTAAAATATCGAAGGTCGCGATC
Found at i:91274067 original size:77 final size:76
Alignment explanation
Indices: 91273904--91274307 Score: 330
Period size: 77 Copynumber: 5.2 Consensus size: 76
91273894 AGAAATTAGC
* * * * * * *
91273904 GAACTGTTAGAATATCGAAAGTTGCGATCTTAAATC-AGCGAAGCGTAAAAATTATAGACGCAAT
1 GAACTGTTAAAATATCGAAGGTTGCGATCTTTAATCGAGCGAACCGTAAAAATCATAGTCGCGAT
91273968 ATTAAGTCAAGT
66 ATTAA-TCAAGT
* * *
91273980 GAACTGTTAAAATATCGAAGGTTGCGATC-TTAAGTCGAACGAACCGTAAAAATGACAGTCGCGA
1 GAACTGTTAAAATATCGAAGGTTGCGATCTTTAA-TCGAGCGAACCGTAAAAATCATAGTCGCGA
*
91274044 TATTAGATCAATT
65 TATTA-ATCAAGT
* * * * *
91274057 GAACTATTAAAATATCGAAGGTCGCAATCTTTAATCGAGCGAACTGTAAAAACCATA-TC-CGTA
1 GAACTGTTAAAATATCGAAGGTTGCGATCTTTAATCGAGCGAACCGTAAAAATCATAGTCGCG--
* * *
91274120 ACATTAAATCGAGC
64 ATATT-AATCAAGT
* * * ** *
91274134 AAACTGTTAGAATATCGAAGGTTGCGATCTTTAATCGAGCGAACCGTAAAAATCATAGCCGTAAC
1 GAACTGTTAAAATATCGAAGGTTGCGATCTTTAATCGAGCGAACCGTAAAAATCATAGTCGCGAT
* *
91274199 ATTAAATCGAGC
66 ATT-AATCAAGT
* * * * * ** * * * **
91274211 AAACTGTTAGAATATCGAAGGTCGAGATCTTAAAATTAAGCGAACCGTAAATATGACAACCGCGA
1 GAACTGTTAAAATATCGAAGGTTGCGATCTT-TAATCGAGCGAACCGTAAAAATCATAGTCGCGA
*
91274276 TATTAAATCAAGC
65 TATT-AATCAAGT
*
91274289 GAACTGTTAGAATATCGAA
1 GAACTGTTAAAATATCGAA
91274308 TATCGTGATA
Statistics
Matches: 272, Mismatches: 46, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
75 5 0.02
76 31 0.11
77 176 0.65
78 60 0.22
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (76 bp):
GAACTGTTAAAATATCGAAGGTTGCGATCTTTAATCGAGCGAACCGTAAAAATCATAGTCGCGAT
ATTAATCAAGT
Found at i:91274101 original size:40 final size:39
Alignment explanation
Indices: 91274057--91274177 Score: 90
Period size: 40 Copynumber: 3.1 Consensus size: 39
91274047 TAGATCAATT
91274057 GAACTATTAAAATATCGAAGGTCGCAATCTTTAATCGAGC
1 GAACT-TTAAAATATCGAAGGTCGCAATCTTTAATCGAGC
* * * *
91274097 GAACTGTAAAA-A-CCATA--TCCGTAA-CATTAAATCGAGC
1 GAACTTTAAAATATCGA-AGGT-CGCAATC-TTTAATCGAGC
* * * *
91274134 AAACTGTTAGAATATCGAAGGTTGCGATCTTTAATCGAGC
1 GAACT-TTAAAATATCGAAGGTCGCAATCTTTAATCGAGC
91274174 GAAC
1 GAAC
91274178 CGTAAAAATC
Statistics
Matches: 59, Mismatches: 13, Indels: 18
0.66 0.14 0.20
Matches are distributed among these distances:
36 2 0.03
37 20 0.34
38 6 0.10
39 7 0.12
40 22 0.37
41 2 0.03
ACGTcount: A:0.38, C:0.18, G:0.18, T:0.26
Consensus pattern (39 bp):
GAACTTTAAAATATCGAAGGTCGCAATCTTTAATCGAGC
Found at i:91274225 original size:154 final size:153
Alignment explanation
Indices: 91273905--91274307 Score: 364
Period size: 154 Copynumber: 2.6 Consensus size: 153
91273895 GAAATTAGCG
* * * ** *
91273905 AACTGTTAGAATATCGAAAGTTGCGATCTTAAATCAGCGAAGCGTAAAAATTATAGACGCAATAT
1 AACTGTTAGAATATCGAAGGTCGCAATCTTAAATCAGCGAAGCGTAAAAACCATAGACGCAACAT
* ** *
91273970 TAAGTCAAGTGAACTGTTAAAATATCGAAGGTTGCGATCTTAAGTCGAACGAACCGTAAAAATGA
66 TAAATCAAGCAAACTGTTAAAATATCGAAGGTTGCGATCTTAAGTCGAACGAACCGTAAAAATCA
* * * * ***
91274035 CAGTCGCGATATTAGATCAATTG
131 CAGCCGCAACATTAAATCAAGCA
* * * ** *
91274058 AACTATTAAAATATCGAAGGTCGCAATCTTTAATCGAGCGAA-CTGTAAAAACCATATCCGTAAC
1 AACTGTTAGAATATCGAAGGTCGCAATCTTAAATC-AGCGAAGC-GTAAAAACCATAGACGCAAC
* * *
91274122 ATTAAATCGAGCAAACTGTTAGAATATCGAAGGTTGCGATCTTTAA-TCGAGCGAACCGTAAAAA
64 ATTAAATCAAGCAAACTGTTAAAATATCGAAGGTTGCGATC-TTAAGTCGAACGAACCGTAAAAA
* * *
91274186 TCATAGCCGTAACATTAAATCGAGCA
128 TCACAGCCGCAACATTAAATCAAGCA
* * * ** * *
91274212 AACTGTTAGAATATCGAAGGTCG-AGATCTTAAAATTAAGCGAACCGTAAATATGACA-ACCGCG
1 AACTGTTAGAATATCGAAGGTCGCA-ATCTT-AAA-TCAGCGAAGCGTAAAAACCATAGA-CGCA
* * *
91274275 ATATTAAATCAAGCGAACTGTTAGAATATCGAA
62 ACATTAAATCAAGCAAACTGTTAAAATATCGAA
91274308 TATCGTGATA
Statistics
Matches: 199, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
153 31 0.16
154 114 0.57
155 52 0.26
156 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (153 bp):
AACTGTTAGAATATCGAAGGTCGCAATCTTAAATCAGCGAAGCGTAAAAACCATAGACGCAACAT
TAAATCAAGCAAACTGTTAAAATATCGAAGGTTGCGATCTTAAGTCGAACGAACCGTAAAAATCA
CAGCCGCAACATTAAATCAAGCA
Found at i:91274326 original size:40 final size:39
Alignment explanation
Indices: 91274199--91274326 Score: 109
Period size: 40 Copynumber: 3.3 Consensus size: 39
91274189 TAGCCGTAAC
* * *
91274199 ATTAAATCGAGCAAACTGTTAGAATATCGAAGGTCGAGAT
1 ATTAAATCAAGCGAACTGTTAGAATATCGAA-ATCGAGAT
* * * * *
91274239 CTTAAAATTAAGCGAACCG-TA-AATAT-GACAACCGCGAT
1 ATT-AAATCAAGCGAACTGTTAGAATATCGA-AATCGAGAT
*
91274277 ATTAAATCAAGCGAACTGTTAGAATATCGAATATCGTGAT
1 ATTAAATCAAGCGAACTGTTAGAATATCGAA-ATCGAGAT
*
91274317 AGTAAATCAA
1 ATTAAATCAA
91274327 CAAACCCACC
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
37 13 0.19
38 11 0.16
39 12 0.18
40 21 0.31
41 11 0.16
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (39 bp):
ATTAAATCAAGCGAACTGTTAGAATATCGAAATCGAGAT
Found at i:91276812 original size:23 final size:23
Alignment explanation
Indices: 91276786--91276834 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
91276776 AATTATGCTT
* *
91276786 CATATA-CATGTATCATCCATTTC
1 CATATACCATGTAACA-ACATTTC
91276809 CATATACCATGTAACAACATTTC
1 CATATACCATGTAACAACATTTC
91276832 CAT
1 CAT
91276835 GTAATTCTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 15 0.65
24 8 0.35
ACGTcount: A:0.35, C:0.27, G:0.04, T:0.35
Consensus pattern (23 bp):
CATATACCATGTAACAACATTTC
Found at i:91280028 original size:20 final size:20
Alignment explanation
Indices: 91280000--91280060 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
91279990 TTTGATAAAT
91280000 ATGATATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
*
91280020 ATGACATGTATGATATGCAC
1 ATGATATGTATGATATGCAC
*
91280040 ATGATAGGTATGATATGCAC
1 ATGATATGTATGATATGCAC
91280060 A
1 A
91280061 CGAGATGTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGATATGTATGATATGCAC
Found at i:91280168 original size:23 final size:24
Alignment explanation
Indices: 91280113--91280231 Score: 172
Period size: 24 Copynumber: 5.0 Consensus size: 24
91280103 GAGGAAGTGC
91280113 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91280137 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91280161 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
91280184 AAAAAGGGCTT-TGCCCTAGTTATT
1 -AAAAGGGCTTATGCCCCAGTTATT
*
91280208 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
91280232 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
23 29 0.33
24 42 0.48
25 16 0.18
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:91280183 original size:47 final size:47
Alignment explanation
Indices: 91280114--91280210 Score: 169
Period size: 47 Copynumber: 2.1 Consensus size: 47
91280104 AGGAAGTGCA
91280114 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
*
91280161 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
91280208 AAA
1 AAA
91280211 AGAGGCTAGG
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 38 0.79
48 10 0.21
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.30
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:91288011 original size:24 final size:26
Alignment explanation
Indices: 91287969--91288016 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
91287959 TTATAATATG
* *
91287969 AAAATGACCGTTTTGA-CCCTAGGTA
1 AAAATGACCATTATGACCCCTAGGTA
91287994 AAAATGACCATTAT-ACCCCTAGG
1 AAAATGACCATTATGACCCCTAGG
91288017 GTTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (26 bp):
AAAATGACCATTATGACCCCTAGGTA
Found at i:91288067 original size:9 final size:9
Alignment explanation
Indices: 91288055--91288111 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
91288045 TTTGATAAAC
91288055 ATGATATGT
1 ATGATATGT
91288064 ATGATATGCAT
1 ATGATATG--T
*
91288075 ATGACATGT
1 ATGATATGT
91288084 ATGATATGCAT
1 ATGATATG--T
*
91288095 ATGATAGGT
1 ATGATATGT
91288104 ATGATATG
1 ATGATATG
91288112 CACACGAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
9 24 0.60
11 16 0.40
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (9 bp):
ATGATATGT
Found at i:91288083 original size:20 final size:20
Alignment explanation
Indices: 91288055--91288113 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
91288045 TTTGATAAAC
91288055 ATGATATGTATGATATGCAT
1 ATGATATGTATGATATGCAT
*
91288075 ATGACATGTATGATATGCAT
1 ATGATATGTATGATATGCAT
*
91288095 ATGATAGGTATGATATGCA
1 ATGATATGTATGATATGCA
91288114 CACGAGATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.36
Consensus pattern (20 bp):
ATGATATGTATGATATGCAT
Found at i:91288239 original size:47 final size:47
Alignment explanation
Indices: 91288170--91288267 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
91288160 AGGAAGTGCA
91288170 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
91288217 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
91288265 AAA
1 AAA
91288268 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:91288284 original size:25 final size:24
Alignment explanation
Indices: 91288169--91288288 Score: 174
Period size: 24 Copynumber: 5.0 Consensus size: 24
91288159 GAGGAAGTGC
91288169 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91288193 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91288217 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
91288240 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
91288265 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
91288289 ATGATAAAGC
Statistics
Matches: 89, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
23 29 0.33
24 30 0.34
25 21 0.24
26 9 0.10
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:91291848 original size:16 final size:17
Alignment explanation
Indices: 91291820--91291851 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
91291810 ATAAATTTTT
91291820 AAAATGTATAAATATAA
1 AAAATGTATAAATATAA
91291837 AAAATGTA-AAATATA
1 AAAATGTATAAATATA
91291852 TACATATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (17 bp):
AAAATGTATAAATATAA
Found at i:91294110 original size:57 final size:59
Alignment explanation
Indices: 91294047--91294177 Score: 167
Period size: 57 Copynumber: 2.2 Consensus size: 59
91294037 AAGTGTCGCC
* * * * *
91294047 TTACTGTTACTGTTTCGGATTCGTTCTGAAGAGGTACTC-CGTACC-TTACTATTATTG
1 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTCACGTACCACTACTATTACTG
* * *
91294104 TTACTGTTACTGTTCCAGATTTGTTCCGATGAGGTACTCTATGTACCACTACTATTACTG
1 TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTC-ACGTACCACTACTATTACTG
91294164 TTACTGTTACTGTT
1 TTACTGTTACTGTT
91294178 ACTATTACTG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
57 34 0.54
59 5 0.08
60 24 0.38
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.43
Consensus pattern (59 bp):
TTACTGTTACTGTTCCAGATTCGTTCCGAAGAGGTACTCACGTACCACTACTATTACTG
Found at i:91294167 original size:6 final size:6
Alignment explanation
Indices: 91294153--91294191 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
91294143 TATGTACCAC
* *
91294153 TACTAT TACTGT TACTGT TACTGT TACTAT TACTGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
91294192 CATTACGGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.23, C:0.18, G:0.10, T:0.49
Consensus pattern (6 bp):
TACTGT
Found at i:91294173 original size:12 final size:12
Alignment explanation
Indices: 91294153--91294197 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
91294143 TATGTACCAC
91294153 TACTATTACTGT
1 TACTATTACTGT
*
91294165 TACTGTTACTGT
1 TACTATTACTGT
91294177 TACTATTACTGT
1 TACTATTACTGT
*
91294189 TACCATTAC
1 TACTATTAC
91294198 GGTGTATTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.47
Consensus pattern (12 bp):
TACTATTACTGT
Found at i:91294179 original size:18 final size:18
Alignment explanation
Indices: 91294153--91294197 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
91294143 TATGTACCAC
*
91294153 TACTATTACTGTTACTGT
1 TACTATTACTATTACTGT
*
91294171 TACTGTTACTATTACTGT
1 TACTATTACTATTACTGT
*
91294189 TACCATTAC
1 TACTATTAC
91294198 GGTGTATTCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.09, T:0.47
Consensus pattern (18 bp):
TACTATTACTATTACTGT
Found at i:91294342 original size:18 final size:17
Alignment explanation
Indices: 91294305--91294343 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
91294295 TAAATAAAGG
* *
91294305 TACTGAATAATTATTGC
1 TACTGAATAATGACTGC
91294322 TACTGAATAACTGACTGC
1 TACTGAATAA-TGACTGC
91294340 TACT
1 TACT
91294344 CTGTAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (17 bp):
TACTGAATAATGACTGC
Found at i:91294386 original size:18 final size:18
Alignment explanation
Indices: 91294359--91294393 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91294349 AAAAAAATTG
*
91294359 TTACTGAATAATTGATTA
1 TTACTAAATAATTGATTA
91294377 TTACTAAATAATTGATT
1 TTACTAAATAATTGATT
91294394 GTTAAAGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.09, T:0.46
Consensus pattern (18 bp):
TTACTAAATAATTGATTA
Found at i:91295816 original size:12 final size:12
Alignment explanation
Indices: 91295799--91295837 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
91295789 GCTGTAGTTA
91295799 ATTCTCTTTCTT
1 ATTCTCTTTCTT
*
91295811 ATTCTCTTGT-TA
1 ATTCTCTT-TCTT
91295823 ATTCTCTTTCTT
1 ATTCTCTTTCTT
91295835 ATT
1 ATT
91295838 TTTGCTCTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 1 0.04
12 21 0.91
13 1 0.04
ACGTcount: A:0.13, C:0.21, G:0.03, T:0.64
Consensus pattern (12 bp):
ATTCTCTTTCTT
Found at i:91296617 original size:105 final size:107
Alignment explanation
Indices: 91296385--91296705 Score: 477
Period size: 105 Copynumber: 3.0 Consensus size: 107
91296375 GGCCAGGCCG
* * ** *
91296385 TGTGACACACATGGCCAATTGACACACCCGTGTCGTAA-CTCGTGTAAGCATTGGATGTGAGGCA
1 TGTGGCACACATGGCCAAGTGACATGCCCGTGTCGTAAGC-CGTGTGAGCATTGGATGTGAGG-A
* * *
91296449 CACAGCTATGTCCCAGCCCGTGCTCATGCCAATCAAAGTGTGAT
64 CACAGCTGTGTCCTAGCCCGTGCTCATGCCAGTCAAAGTGTGAT
* *
91296493 TGTTGCACACATGGCCAAGTGACATGCCTGTGTCGTAAGCCGTGTGAGCATTGGATGTGAGG-CA
1 TGTGGCACACATGGCCAAGTGACATGCCCGTGTCGTAAGCCGTGTGAGCATTGGATGTGAGGACA
91296557 CA-CTGTGTCCTAGCCCGTGCTCATGCCAGTCAAAGTGTGAT
66 CAGCTGTGTCCTAGCCCGTGCTCATGCCAGTCAAAGTGTGAT
* *
91296598 TGTGGCACACATGGCCAAGTGACATGCCCGTGTCGTAAGCTGTGTGGGCATTGGATGTGAGGCAC
1 TGTGGCACACATGGCCAAGTGACATGCCCGTGTCGTAAGCCGTGTGAGCATTGGATGTGAGG-AC
*
91296663 ACAGCTGTGTCCTAGCCCGTACTCATGCCAGTCAAAGTGTGAT
65 ACAGCTGTGTCCTAGCCCGTGCTCATGCCAGTCAAAGTGTGAT
91296706 GGAATTACTA
Statistics
Matches: 194, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
105 94 0.48
106 4 0.02
107 4 0.02
108 91 0.47
109 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.24
Consensus pattern (107 bp):
TGTGGCACACATGGCCAAGTGACATGCCCGTGTCGTAAGCCGTGTGAGCATTGGATGTGAGGACA
CAGCTGTGTCCTAGCCCGTGCTCATGCCAGTCAAAGTGTGAT
Found at i:91297656 original size:24 final size:24
Alignment explanation
Indices: 91297610--91297670 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
91297600 TTATTTGTTT
91297610 CTATTTGTTTATCAGATTCTGTATTA
1 CTATTTG-TT-TCAGATTCTGTATTA
*
91297636 CTATTTGTTTCCGATTCTGTATTA
1 CTATTTGTTTCAGATTCTGTATTA
*
91297660 CTATTCGTTTC
1 CTATTTGTTTC
91297671 TATTTCTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
24 24 0.73
25 2 0.06
26 7 0.21
ACGTcount: A:0.18, C:0.16, G:0.11, T:0.54
Consensus pattern (24 bp):
CTATTTGTTTCAGATTCTGTATTA
Found at i:91298122 original size:275 final size:275
Alignment explanation
Indices: 91297631--91298180 Score: 1100
Period size: 275 Copynumber: 2.0 Consensus size: 275
91297621 TCAGATTCTG
91297631 TATTACTATTTGTTTCCGATTCTGTATTACTATTCGTTTCTATTTCTATTTTTTTAGATAATAAA
1 TATTACTATTTGTTTCCGATTCTGTATTACTATTCGTTTCTATTTCTATTTTTTTAGATAATAAA
91297696 GACATTTTAATGTATTTTTTTGGTGAAAAAAGAGAAATACATCAACTACGTACGTAAACCATCCA
66 GACATTTTAATGTATTTTTTTGGTGAAAAAAGAGAAATACATCAACTACGTACGTAAACCATCCA
91297761 TTGTCTTTTTCTTCTTGTAGCAAAACACTTATTTTGTCTGGAGCCTAATTTGAAGGCTTGTTTTT
131 TTGTCTTTTTCTTCTTGTAGCAAAACACTTATTTTGTCTGGAGCCTAATTTGAAGGCTTGTTTTT
91297826 CAGCTCAAACTGAGTTTGGCTAACCTATCTGCAACCAAGTTTTGGGTTCTTGGAATGTGTTTAAT
196 CAGCTCAAACTGAGTTTGGCTAACCTATCTGCAACCAAGTTTTGGGTTCTTGGAATGTGTTTAAT
91297891 GTATTATTAAACTTT
261 GTATTATTAAACTTT
91297906 TATTACTATTTGTTTCCGATTCTGTATTACTATTCGTTTCTATTTCTATTTTTTTAGATAATAAA
1 TATTACTATTTGTTTCCGATTCTGTATTACTATTCGTTTCTATTTCTATTTTTTTAGATAATAAA
91297971 GACATTTTAATGTATTTTTTTGGTGAAAAAAGAGAAATACATCAACTACGTACGTAAACCATCCA
66 GACATTTTAATGTATTTTTTTGGTGAAAAAAGAGAAATACATCAACTACGTACGTAAACCATCCA
91298036 TTGTCTTTTTCTTCTTGTAGCAAAACACTTATTTTGTCTGGAGCCTAATTTGAAGGCTTGTTTTT
131 TTGTCTTTTTCTTCTTGTAGCAAAACACTTATTTTGTCTGGAGCCTAATTTGAAGGCTTGTTTTT
91298101 CAGCTCAAACTGAGTTTGGCTAACCTATCTGCAACCAAGTTTTGGGTTCTTGGAATGTGTTTAAT
196 CAGCTCAAACTGAGTTTGGCTAACCTATCTGCAACCAAGTTTTGGGTTCTTGGAATGTGTTTAAT
91298166 GTATTATTAAACTTT
261 GTATTATTAAACTTT
91298181 CATAATCATC
Statistics
Matches: 275, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
275 275 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (275 bp):
TATTACTATTTGTTTCCGATTCTGTATTACTATTCGTTTCTATTTCTATTTTTTTAGATAATAAA
GACATTTTAATGTATTTTTTTGGTGAAAAAAGAGAAATACATCAACTACGTACGTAAACCATCCA
TTGTCTTTTTCTTCTTGTAGCAAAACACTTATTTTGTCTGGAGCCTAATTTGAAGGCTTGTTTTT
CAGCTCAAACTGAGTTTGGCTAACCTATCTGCAACCAAGTTTTGGGTTCTTGGAATGTGTTTAAT
GTATTATTAAACTTT
Found at i:91300917 original size:5 final size:5
Alignment explanation
Indices: 91300909--91300950 Score: 59
Period size: 5 Copynumber: 8.6 Consensus size: 5
91300899 AACCTAAATT
* *
91300909 AATAA AATAA AATAA AATAA AACAA AATAA AA-AA AATGA AAT
1 AATAA AATAA AATAA AATAA AATAA AATAA AATAA AATAA AAT
91300951 CTTTTTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
4 4 0.12
5 29 0.88
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:91303232 original size:10 final size:9
Alignment explanation
Indices: 91303216--91303278 Score: 51
Period size: 10 Copynumber: 6.8 Consensus size: 9
91303206 AAGTATTTAG
91303216 AAAAATATT
1 AAAAATATT
91303225 ATAAAATAATGT
1 A-AAAAT-AT-T
*
91303237 AAAAATAGT
1 AAAAATATT
91303246 ATAAAAT-TT
1 A-AAAATATT
91303255 AAAAATTATT
1 AAAAA-TATT
91303265 -AAAA-ATT
1 AAAAATATT
91303272 AAAAATA
1 AAAAATA
91303279 AGCTATATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
7 3 0.07
8 8 0.18
9 11 0.25
10 13 0.30
11 7 0.16
12 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (9 bp):
AAAAATATT
Found at i:91303259 original size:18 final size:17
Alignment explanation
Indices: 91303216--91303278 Score: 56
Period size: 21 Copynumber: 3.4 Consensus size: 17
91303206 AAGTATTTAG
91303216 AAAAATATTATAAAATAATGT
1 AAAAATA-TATAAAAT--T-T
91303237 AAAAATAGTATAAAATTT
1 AAAAATA-TATAAAATTT
*
91303255 AAAAAT-TATTAAAAATT
1 AAAAATATA-TAAAATTT
91303272 AAAAATA
1 AAAAATA
91303279 AGCTATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.05
17 13 0.34
18 7 0.18
19 1 0.03
21 15 0.39
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (17 bp):
AAAAATATATAAAATTT
Found at i:91303922 original size:28 final size:30
Alignment explanation
Indices: 91303857--91304007 Score: 98
Period size: 30 Copynumber: 4.9 Consensus size: 30
91303847 TTTAAAAAAA
* *
91303857 ATTTAATATATTATTCTAAATTTTTTTATAAC
1 ATTTAATACATT-TTCTATA-TTTTTTATAAC
91303889 ATTT-A-ACATTTTCTATATTTTTTATAA-
1 ATTTAATACATTTTCTATATTTTTTATAAC
* *
91303916 TTATTAATAGATTTTCTATATTTTTCTATAA-
1 AT-TTAATACATTTTCTATATTTTT-TATAAC
* * *
91303947 AGTTGTGTAATA-TTTTTCTAAAATTTCTTATAAC
1 A--T-T-TAATACATTTTCT-ATATTTTTTATAAC
* *
91303981 ATTTAA-AAATTTTCTATAATTTTTATA
1 ATTTAATACATTTTCTATATTTTTTATA
91304008 TTTTCAATCA
Statistics
Matches: 96, Mismatches: 13, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
27 1 0.01
28 12 0.12
29 17 0.18
30 29 0.30
31 7 0.07
32 5 0.05
33 13 0.14
34 12 0.12
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.56
Consensus pattern (30 bp):
ATTTAATACATTTTCTATATTTTTTATAAC
Found at i:91304010 original size:18 final size:18
Alignment explanation
Indices: 91303989--91304025 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
91303979 ACATTTAAAA
*
91303989 ATTTTCTATAATTTTTAT
1 ATTTTCAATAATTTTTAT
*
91304007 ATTTTCAATCATTTTTAT
1 ATTTTCAATAATTTTTAT
91304025 A
1 A
91304026 ATTATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTTCAATAATTTTTAT
Found at i:91304380 original size:15 final size:14
Alignment explanation
Indices: 91304356--91304398 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
91304346 TGTTTGTGGA
91304356 TTTTTAAAAAATAT
1 TTTTTAAAAAATAT
*
91304370 TTTTTATAAAAGTAT
1 TTTTTA-AAAAATAT
*
91304385 TATTTTAAGAAATA
1 T-TTTTAAAAAATA
91304399 AATTTCATGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 6 0.25
15 13 0.54
16 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (14 bp):
TTTTTAAAAAATAT
Found at i:91305727 original size:20 final size:20
Alignment explanation
Indices: 91305702--91305751 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
91305692 TGGCTTAAAA
91305702 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
91305722 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
91305739 GTGGTAGTGGATT
1 TTGGTAGTGGATT
91305752 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:91310366 original size:20 final size:20
Alignment explanation
Indices: 91310341--91310390 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
91310331 TGGCTTAAAA
91310341 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
91310361 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
91310378 GTGGTAGTGGATT
1 TTGGTAGTGGATT
91310391 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:91312196 original size:14 final size:14
Alignment explanation
Indices: 91312177--91312210 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
91312167 TCTATTACAA
91312177 TTACTTAGATTATT
1 TTACTTAGATTATT
91312191 TTACTTAGATTATT
1 TTACTTAGATTATT
91312205 TT-CTTA
1 TTACTTA
91312211 AATCCATAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.26, C:0.09, G:0.06, T:0.59
Consensus pattern (14 bp):
TTACTTAGATTATT
Found at i:91315572 original size:20 final size:20
Alignment explanation
Indices: 91315530--91315572 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
91315520 CAATTAAACC
* *
91315530 TAATTTTTTTATATTGATAA
1 TAATTTTTTAATATTAATAA
* *
91315550 TAATTTTTTAATTTTAATTA
1 TAATTTTTTAATATTAATAA
91315570 TAA
1 TAA
91315573 AAATTAAACA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
TAATTTTTTAATATTAATAA
Found at i:91316222 original size:19 final size:19
Alignment explanation
Indices: 91316184--91316223 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
91316174 CTTTCCTACT
*
91316184 TTAATGCGTCAATATATAC
1 TTAATGCGTCAATAGATAC
*
91316203 TTAATGCGTCAATAGGTAC
1 TTAATGCGTCAATAGATAC
91316222 TT
1 TT
91316224 TCATATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (19 bp):
TTAATGCGTCAATAGATAC
Found at i:91320426 original size:9 final size:9
Alignment explanation
Indices: 91320403--91320468 Score: 57
Period size: 11 Copynumber: 7.1 Consensus size: 9
91320393 TGCCACACTA
91320403 ATAAATAATT
1 ATAAA-AATT
*
91320413 TTAAAAATT
1 ATAAAAATT
91320422 ATAAAAAAATT
1 AT--AAAAATT
91320433 ATAAAAA-T
1 ATAAAAATT
91320441 -T-AAAATT
1 ATAAAAATT
91320448 ATAAAAATTT
1 ATAAAAA-TT
91320458 CATAAAAATT
1 -ATAAAAATT
91320468 A
1 A
91320469 ACATGAAGCT
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
6 4 0.09
7 2 0.04
8 2 0.04
9 15 0.32
10 8 0.17
11 16 0.34
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
ATAAAAATT
Found at i:91320447 original size:15 final size:15
Alignment explanation
Indices: 91320427--91320456 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
91320417 AAATTATAAA
91320427 AAAATTATAAAAATT
1 AAAATTATAAAAATT
91320442 AAAATTATAAAAATT
1 AAAATTATAAAAATT
91320457 TCATAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AAAATTATAAAAATT
Found at i:91320462 original size:26 final size:26
Alignment explanation
Indices: 91320416--91320469 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
91320406 AATAATTTTA
91320416 AAAATTATAAAAAAATTATAAAAATT
1 AAAATTATAAAAAAATTATAAAAATT
*
91320442 AAAATTAT-AAAAATTTCATAAAAATT
1 AAAATTATAAAAAAATT-ATAAAAATT
91320468 AA
1 AA
91320470 CATGAAGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (26 bp):
AAAATTATAAAAAAATTATAAAAATT
Found at i:91323711 original size:20 final size:20
Alignment explanation
Indices: 91323670--91323714 Score: 67
Period size: 19 Copynumber: 2.3 Consensus size: 20
91323660 GTTCGTCGAC
91323670 AAATAATTTAAAAATTATAA
1 AAATAATTTAAAAATTATAA
91323690 AAAT-ATTTAAAATATT-TAA
1 AAATAATTTAAAA-ATTATAA
91323709 AAATAA
1 AAATAA
91323715 AATTAGCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAATTTAAAAATTATAA
Found at i:91324935 original size:22 final size:22
Alignment explanation
Indices: 91324904--91324945 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
91324894 AAAAAAAGAC
*
91324904 TAATATTAAAATAGTAGCAACA
1 TAATAGTAAAATAGTAGCAACA
91324926 TAATAGTAAAATAGTAGCAA
1 TAATAGTAAAATAGTAGCAA
91324946 AATAGGGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.55, C:0.07, G:0.12, T:0.26
Consensus pattern (22 bp):
TAATAGTAAAATAGTAGCAACA
Found at i:91324949 original size:11 final size:11
Alignment explanation
Indices: 91324911--91324950 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
91324901 GACTAATATT
91324911 AAAATAGTAGC
1 AAAATAGTAGC
* * *
91324922 AACATAATAGT
1 AAAATAGTAGC
91324933 AAAATAGTAGC
1 AAAATAGTAGC
91324944 AAAATAG
1 AAAATAG
91324951 GGAGAAAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.57, C:0.07, G:0.15, T:0.20
Consensus pattern (11 bp):
AAAATAGTAGC
Found at i:91325252 original size:6 final size:6
Alignment explanation
Indices: 91325241--91325273 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
91325231 TTAGTAATTT
91325241 AATATA AATATA AATATA AATAT- -ATATA AATAT
1 AATATA AATATA AATATA AATATA AATATA AATAT
91325274 TATTTAACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 4 0.16
6 21 0.84
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
AATATA
Found at i:91325258 original size:12 final size:11
Alignment explanation
Indices: 91325240--91325301 Score: 56
Period size: 12 Copynumber: 5.5 Consensus size: 11
91325230 ATTAGTAATT
91325240 TAATATAAATA
1 TAATATAAATA
91325251 TAAATATAAATA
1 T-AATATAAATA
91325263 T-ATATAAATA
1 TAATATAAATA
* *
91325273 TTATTTAACATA
1 TAATATAA-ATA
*
91325285 T-ATAATTAATA
1 TAAT-ATAAATA
91325296 TAATAT
1 TAATAT
91325302 TATTTTATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
10 10 0.23
11 14 0.33
12 19 0.44
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (11 bp):
TAATATAAATA
Found at i:91325314 original size:29 final size:30
Alignment explanation
Indices: 91325249--91325320 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
91325239 TTAATATAAA
*
91325249 TATAA-ATATAAATATATATAAATATTATT
1 TATAATATATAATTATATATAAATATTATT
91325278 TA-ACATATATAATTA-ATAT-AATATTATTT
1 TATA-ATATATAATTATATATAAATATTA-TT
*
91325307 TATAATATAAAATT
1 TATAATATATAATT
91325321 TTGGTCTGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
28 8 0.22
29 20 0.54
30 9 0.24
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
TATAATATATAATTATATATAAATATTATT
Found at i:91326084 original size:15 final size:15
Alignment explanation
Indices: 91326064--91326095 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
91326054 AGTTTATGAT
91326064 TTTTAAAAAATAAAA
1 TTTTAAAAAATAAAA
*
91326079 TTTTAAAAAGTAAAA
1 TTTTAAAAAATAAAA
91326094 TT
1 TT
91326096 GGGTATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
TTTTAAAAAATAAAA
Found at i:91331418 original size:16 final size:17
Alignment explanation
Indices: 91331382--91331418 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
91331372 TTAAGAATTT
*
91331382 TTTATTTTTTTTGAAAA
1 TTTAATTTTTTTGAAAA
91331399 -TTAATTTTTTT-AAAA
1 TTTAATTTTTTTGAAAA
91331414 TTTAA
1 TTTAA
91331419 ATTATTTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTTAATTTTTTTGAAAA
Found at i:91339446 original size:10 final size:10
Alignment explanation
Indices: 91339431--91339479 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
91339421 AATTTTAGTT
*
91339431 TTTATCTTTG
1 TTTATCTTTA
91339441 TTTATCTTTA
1 TTTATCTTTA
*
91339451 ATTATCTTTA
1 TTTATCTTTA
91339461 TTTAT-TTGTA
1 TTTATCTT-TA
91339471 TTTATCTTT
1 TTTATCTTT
91339480 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.18, C:0.08, G:0.04, T:0.69
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:91341935 original size:3 final size:3
Alignment explanation
Indices: 91341927--91342057 Score: 72
Period size: 3 Copynumber: 44.0 Consensus size: 3
91341917 TAAATTAATA
* * * * *
91341927 TAT TAT TAT TACT TAT TAT T-T TAC TAC TAT TAT TAT TGT CAT GAT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
91341972 TAT CAC TAT TAT TAT TAC T-T TAC TAT TAT AAT T-T AAT GTAT TGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT
** *
91342016 CGT TAT TAT TAT TAT TAT TAC TAT T-T TCAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT
91342058 CTTCATACTA
Statistics
Matches: 96, Mismatches: 25, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
2 6 0.06
3 83 0.86
4 7 0.07
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:91341996 original size:41 final size:41
Alignment explanation
Indices: 91341930--91342040 Score: 104
Period size: 41 Copynumber: 2.7 Consensus size: 41
91341920 ATTAATATAT
* * *
91341930 TATTATTACTTATTATT-TTAC--TACTATTATTATTGTCATG
1 TATTATCAC-TATTATTATTACTTTACTATTATAATT-TAATG
91341970 -ATTATCACTATTATTATTACTTTACTATTATAATTTAATG
1 TATTATCACTATTATTATTACTTTACTATTATAATTTAATG
* ** *
91342010 TATTGTCGTTATTATTATTATTATTACTATT
1 TATTATCACTATTATTATTACT-TTACTATT
91342041 TTCATTATTA
Statistics
Matches: 59, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
38 7 0.12
39 11 0.19
40 4 0.07
41 29 0.49
42 8 0.14
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.57
Consensus pattern (41 bp):
TATTATCACTATTATTATTACTTTACTATTATAATTTAATG
Found at i:91342062 original size:18 final size:18
Alignment explanation
Indices: 91342026--91342063 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
91342016 CGTTATTATT
*
91342026 ATTATTATTACTATTTTC
1 ATTATTATTACTATCTTC
*
91342044 ATTATTATTATTATCTTC
1 ATTATTATTACTATCTTC
91342062 AT
1 AT
91342064 ACTAAACTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTATTATTACTATCTTC
Found at i:91342167 original size:7 final size:7
Alignment explanation
Indices: 91342119--91342178 Score: 59
Period size: 7 Copynumber: 8.3 Consensus size: 7
91342109 TCTTTTTGTG
91342119 TTTATTTA
1 TTTA-TTA
*
91342127 TTTATTGT
1 TTTATT-A
91342135 TTTATTA
1 TTTATTA
*
91342142 TTAATTAA
1 TTTATT-A
*
91342150 TTTAGTA
1 TTTATTA
91342157 -TTATTA
1 TTTATTA
91342163 TTTATTA
1 TTTATTA
91342170 TTTATTA
1 TTTATTA
91342177 TT
1 TT
91342179 GTCCTTATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
6 5 0.12
7 23 0.53
8 15 0.35
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (7 bp):
TTTATTA
Found at i:91342384 original size:3 final size:3
Alignment explanation
Indices: 91342378--91342424 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
91342368 ATTGTCAATA
91342378 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
91342425 CTACTGTCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:91342975 original size:33 final size:33
Alignment explanation
Indices: 91342930--91342996 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
91342920 GGCAATGATC
91342930 CGTATTTAGAATTTCGAGAAAATCGTGCCCTAA
1 CGTATTTAGAATTTCGAGAAAATCGTGCCCTAA
*
91342963 CGTATTTGGAATTTCGAGAAAATCGTGCCCTAA
1 CGTATTTAGAATTTCGAGAAAATCGTGCCCTAA
91342996 C
1 C
91342997 TTACTGGGTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.30
Consensus pattern (33 bp):
CGTATTTAGAATTTCGAGAAAATCGTGCCCTAA
Found at i:91343793 original size:20 final size:21
Alignment explanation
Indices: 91343756--91343797 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
91343746 GATTCATGCA
91343756 TAAGTTTAGAAGAAACACATG
1 TAAGTTTAGAAGAAACACATG
*
91343777 TAAGTTTAG-ATAAACACATG
1 TAAGTTTAGAAGAAACACATG
91343797 T
1 T
91343798 TAAAATGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (21 bp):
TAAGTTTAGAAGAAACACATG
Found at i:91346835 original size:23 final size:24
Alignment explanation
Indices: 91346800--91346844 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
91346790 TCTTTACCCC
*
91346800 TTTTGTTACTTTT-GTCTTTAACTT
1 TTTTATTACTTTTAG-CTTTAACTT
91346824 TTTTATTA-TTTTAGCTTTAAC
1 TTTTATTACTTTTAGCTTTAAC
91346845 CATTAAATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.18, C:0.11, G:0.07, T:0.64
Consensus pattern (24 bp):
TTTTATTACTTTTAGCTTTAACTT
Found at i:91349599 original size:30 final size:32
Alignment explanation
Indices: 91349527--91349599 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 32
91349517 ATAAATAATG
91349527 AAACAATTTT-AAATAAGTAATTCATAAAAAA
1 AAACAATTTTAAAATAAGTAATTCATAAAAAA
* **
91349558 AAAGAGCTTTAAAAT-AG-ATATT-ATAAAAAA
1 AAACAATTTTAAAATAAGTA-ATTCATAAAAAA
91349588 AAACAATTTTAA
1 AAACAATTTTAA
91349600 GGGAATAGTA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
30 18 0.53
31 12 0.35
32 4 0.12
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.29
Consensus pattern (32 bp):
AAACAATTTTAAAATAAGTAATTCATAAAAAA
Found at i:91350116 original size:7 final size:7
Alignment explanation
Indices: 91350106--91350134 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
91350096 GTACAAATTG
91350106 AAAATAA
1 AAAATAA
91350113 AAAATAA
1 AAAATAA
91350120 AAAATAA
1 AAAATAA
91350127 AAAA-AA
1 AAAATAA
91350133 AA
1 AA
91350135 CTAAAGAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAATAA
Found at i:91350799 original size:19 final size:19
Alignment explanation
Indices: 91350767--91350805 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
91350757 AAATAGAAAT
* * *
91350767 AAGAAAATAGGAAATCGAA
1 AAGAAAAAAAGAAAGCGAA
91350786 AAGAAAAAAAGAAAGCGAA
1 AAGAAAAAAAGAAAGCGAA
91350805 A
1 A
91350806 TCAACCTCTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.05, G:0.21, T:0.05
Consensus pattern (19 bp):
AAGAAAAAAAGAAAGCGAA
Found at i:91351556 original size:43 final size:44
Alignment explanation
Indices: 91351509--91351591 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
91351499 TAGACTTGTA
*
91351509 GCTTCAA-CTTGCTCCACTGC-ACTTCAGAGAGACAAGATTTGCG
1 GCTTCAATC-TGCTCCACTACAACTTCAGAGAGACAAGATTTGCG
* *
91351552 GCTTCAATCTGCTCCACTACAACTTCAGGGAGATAAGATT
1 GCTTCAATCTGCTCCACTACAACTTCAGAGAGACAAGATT
91351592 CACCATGATA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
43 17 0.49
44 18 0.51
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (44 bp):
GCTTCAATCTGCTCCACTACAACTTCAGAGAGACAAGATTTGCG
Found at i:91351870 original size:86 final size:86
Alignment explanation
Indices: 91351643--91352154 Score: 412
Period size: 86 Copynumber: 5.9 Consensus size: 86
91351633 TATAAGACTT
* * ** * *
91351643 GTGGCTTTAATCTG-TCCACTATTGCTTAGGGAGACAAGATTTGCCATGGTC-AGCCTACTCCAC
1 GTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGA-TCTGCTCCAC
* *
91351706 TACTACTAAGGGAGATAGGATG
65 TACTGCTTAGGGAGATAGGATG
* * *
91351728 GTGGCTTAAATCTGTTCCACTACTGCTTAAGGG-GACAAGATTTGCCGTCTTGGATCTGCTCCAC
1 GTGGCTTAAATCTGCTCCACTACTGCTT-AGGGAGACAAGATTTGCCATCTTCGATCTGCTCCAC
*
91351792 TACTGCTTAGGAAGATAGGATG
65 TACTGCTTAGGGAGATAGGATG
* *
91351814 GTGGCTTAAATCTGCTCCACTATTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCTACT
1 GTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACT
*
91351879 ACTGCTTAGGGAGATAAGAT-
66 ACTGCTTAGGGAGATAGGATG
* ** * ** * * * * * * ** *
91351899 CTACAATCTTCAGCCTACTCCGCTACTGCTTAGGGAGATAGGATGGTG---GCTTAAATTTGCTC
1 GT---GGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGAT-TTGCCATCTTCGATCTGCTC
* **
91351961 CACTACTGCTTAGGGAGACAAAAT-
62 CACTACTGCTTAGGGAGATAGGATG
* * ** * * * * * * * *
91351985 TTGCCATCTTCGATCTGCTCCACTATTTCTTAGGGAGATAAGATCTACAATCTTC-AGCCTACTC
1 GTG---GCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGA-TCTGCTC
91352049 CACTACTGCTTAGGGAGATAGGATG
62 CACTACTGCTTAGGGAGATAGGATG
* * * * * *
91352074 GTGCCTTAAATCTACTCCATTACTGCTTGGGGAGACAAGATTTGCCGTCTTTGATCTGCTCCACT
1 GTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACT
91352139 ACTGCTTAGGGAGATA
66 ACTGCTTAGGGAGATA
91352155 AGATCTACAA
Statistics
Matches: 336, Mismatches: 74, Indels: 33
0.76 0.17 0.07
Matches are distributed among these distances:
85 19 0.06
86 249 0.74
87 7 0.02
88 57 0.17
89 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (86 bp):
GTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGCTCCACT
ACTGCTTAGGGAGATAGGATG
Found at i:91351871 original size:130 final size:130
Alignment explanation
Indices: 91351786--91352314 Score: 860
Period size: 130 Copynumber: 4.1 Consensus size: 130
91351776 CTTGGATCTG
* * *
91351786 CTCCACTACTGCTTAGGAAGATAGGATGGTGGCTTAAATCTGCTCCACTATTGCTTAGGGAGACA
1 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
*
91351851 AGATTTGCCATCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
66 AGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
* * *
91351916 CTCCGCTACTGCTTAGGGAGATAGGATGGTGGCTTAAATTTGCTCCACTACTGCTTAGGGAGACA
1 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
* * *
91351981 AAATTTGCCATCTTCGATCTGCTCCACTATTTCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
66 AGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
* * *
91352046 CTCCACTACTGCTTAGGGAGATAGGATGGTGCCTTAAATCTACTCCATTACTGCTTGGGGAGACA
1 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
* *
91352111 AGATTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
66 AGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
*
91352176 CTCCACTACTACTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
1 CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
* * * * * *
91352241 CGATTTGTCTTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACAATCTCCAACCTA
66 AGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
91352306 CTCCACTAC
1 CTCCACTAC
91352315 CGCTGATACG
Statistics
Matches: 369, Mismatches: 30, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 369 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (130 bp):
CTCCACTACTGCTTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACA
AGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTA
Found at i:91352100 original size:216 final size:215
Alignment explanation
Indices: 91351657--91352114 Score: 510
Period size: 216 Copynumber: 2.1 Consensus size: 215
91351647 CTTTAATCTG
* * * * *
91351657 TCCACTATTGCTTAGGGAGACAAGATTTGCCATGGTCAGCCTACTCCACTACTACTAAGGGAGAT
1 TCCACTACTGCTTAGGGAGACAAGATCTACAATCGTCAGCCTACTCCACTACTACTAAGGGAGAT
* * * *
91351722 AGGATGGTGGCTTAAATCTGTTCCACTACTGCTTAAGGGGACAAGATTTGCCGTCTTGGATCTGC
66 AGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAAGGGGACAAAATTTGCCATCTTCGATCTGC
* * * * * *
91351787 TCCACTACTGCTTAGGAAGATAGGATGGTGGCTTAAATCTGCTCCACTATTGCTTAGGGAGACAA
131 TCCACTACTGCTTAGGAAGATAAGATGCTAGCTTAAACCTACTCCACTACTGCTTAGGGAGACAA
* ** *
91351852 GATTTGCCATCTTCGATCTGC
196 GATGTGCCA-CTTAAATCTAC
* * * * * *
91351873 TCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCGCTACTGCTTAGGGAGAT
1 TCCACTACTGCTTAGGGAGACAAGATCTACAATCGTCAGCCTACTCCACTACTACTAAGGGAGAT
*
91351938 AGGATGGTGGCTTAAATTTGCTCCACTACTGCTT-AGGGAGACAAAATTTGCCATCTTCGATCTG
66 AGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAAGGG-GACAAAATTTGCCATCTTCGATCTG
* * * * * *
91352002 CTCCACTATTTCTTAGGGAGATAAGAT-CTACAATCTTCAGCCTACTCCACTACTGCTTAGGGAG
130 CTCCACTACTGCTTAGGAAGATAAGATGCT---AGCTTAAACCTACTCCACTACTGCTTAGGGAG
* *
91352066 ATAGGATGGTG-C-CTTAAATCTAC
192 ACAAGAT-GTGCCACTTAAATCTAC
* *
91352089 TCCATTACTGCTTGGGGAGACAAGAT
1 TCCACTACTGCTTAGGGAGACAAGAT
91352115 TTGCCGTCTT
Statistics
Matches: 199, Mismatches: 38, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
215 5 0.03
216 161 0.81
218 31 0.16
219 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (215 bp):
TCCACTACTGCTTAGGGAGACAAGATCTACAATCGTCAGCCTACTCCACTACTACTAAGGGAGAT
AGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAAGGGGACAAAATTTGCCATCTTCGATCTGC
TCCACTACTGCTTAGGAAGATAAGATGCTAGCTTAAACCTACTCCACTACTGCTTAGGGAGACAA
GATGTGCCACTTAAATCTAC
Found at i:91352222 original size:86 final size:85
Alignment explanation
Indices: 91351867--91352288 Score: 325
Period size: 86 Copynumber: 4.9 Consensus size: 85
91351857 GCCATCTTCG
* *
91351867 ATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCGCTACTGCTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
*
91351932 GGAGATAGGATGGTGGCTTAA
66 GGAGATAAGAT-GTGGCTTAA
* * * * * * * * * *
91351953 ATTTGCTCCACTACTGCTTAGGGAGACAAAATTTGCCATCTTC-GATCTGCTCCACTATTTCTTA
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAG-CCTACTCCACTACTGCTTA
* ** *
91352017 GGGAGATAAGATCTACAATCTTCA
65 GGGAGATAAGATGT---GGCTTAA
** * * * * * ** * *
91352041 GCCTACTCCACTACTGCTTAGGGAGATAGGATGGTGC---CTTAAATCTACTCCATTACTGCTTG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGAT-CTACAATCTTCAGCCTACTCCACTACTGCTTA
* * **
91352103 GGGAGACAAGATTTGCCGTCTTTG
65 GGGAGATAAGATGTG--G-CTTAA
*
91352127 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTACTTAG
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
*
91352192 GGAGATAGGATGGTGGCTTAA
66 GGAGATAAGAT-GTGGCTTAA
* * * * * * *
91352213 ATCTACTCCACTACTGCTTAGGGAGACACGATTTGTC-TTCTTC-GATCTACTCCACTACTGCTT
1 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCT-ACAATCTTCAG-CCTACTCCACTACTGCTT
91352276 AGGGAGATAAGAT
64 AGGGAGATAAGAT
91352289 CTACAATCTC
Statistics
Matches: 257, Mismatches: 64, Indels: 30
0.73 0.18 0.09
Matches are distributed among these distances:
85 5 0.02
86 187 0.73
87 2 0.01
88 58 0.23
89 5 0.02
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (85 bp):
ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTACTCCACTACTGCTTAG
GGAGATAAGATGTGGCTTAA
Found at i:91352307 original size:44 final size:43
Alignment explanation
Indices: 91351657--91352314 Score: 375
Period size: 44 Copynumber: 15.2 Consensus size: 43
91351647 CTTTAATCTG
* * * ** **
91351657 TCCACTATTGCTTAGGGAGACAAGATTTGCCATGGTCAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGATCTG-CATCTTCAATCTAC
* * * * * * **
91351701 TCCACTACTACTAAGGGAGATAGGATGGTG--GCTTAAATCTGT
1 TCCACTACTGCTTAGGGAGATAAGAT-CTGCATCTTCAATCTAC
* * * ** *
91351743 TCCACTACTGCTTAAGGG-GACAAGATTTGCCGTCTTGGATCTGC
1 TCCACTACTGCTT-AGGGAGATAAGATCTG-CATCTTCAATCTAC
* * * * * *
91351787 TCCACTACTGCTTAGGAAGATAGGATGGTG--GCTTAAATCTGC
1 TCCACTACTGCTTAGGGAGATAAGAT-CTGCATCTTCAATCTAC
* * * * *
91351829 TCCACTATTGCTTAGGGAGACAAGATTTGCCATCTTCGATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATCTG-CATCTTCAATCTAC
* * **
91351873 TCTACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGATCTGC-ATCTTCAATCTAC
* * * * * * *
91351917 TCCGCTACTGCTTAGGGAGATAGGATGGTG--GCTTAAATTTGC
1 TCCACTACTGCTTAGGGAGATAAGAT-CTGCATCTTCAATCTAC
* * * * *
91351959 TCCACTACTGCTTAGGGAGACAAAATTTGCCATCTTCGATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATCTG-CATCTTCAATCTAC
* * * **
91352003 TCCACTATTTCTTAGGGAGATAAGATCTACAATCTTCAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGATCTGC-ATCTTCAATCTAC
* * *
91352047 TCCACTACTGCTTAGGGAGATAGGATGGTGC--CTTAAATCTAC
1 TCCACTACTGCTTAGGGAGATAAGAT-CTGCATCTTCAATCTAC
* * * * * ** *
91352089 TCCATTACTGCTTGGGGAGACAAGATTTGCCGTCTTTGATCTGC
1 TCCACTACTGCTTAGGGAGATAAGATCTG-CATCTTCAATCTAC
* **
91352133 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTAC
1 TCCACTACTGCTTAGGGAGATAAGATCTGC-ATCTTCAATCTAC
* * * * *
91352177 TCCACTACTACTTAGGGAGATAGGATGGTG--GCTTAAATCTAC
1 TCCACTACTGCTTAGGGAGATAAGAT-CTGCATCTTCAATCTAC
* * * * *
91352219 TCCACTACTGCTTAGGGAGACACGATTTGTCTTCTTCGATCTAC
1 TCCACTACTGCTTAGGGAGATAAGATCTG-CATCTTCAATCTAC
* * *
91352263 TCCACTACTGCTTAGGGAGATAAGATCTACAATCTCCAACCTAC
1 TCCACTACTGCTTAGGGAGATAAGATCTGC-ATCTTCAATCTAC
91352307 TCCACTAC
1 TCCACTAC
91352315 CGCTGATACG
Statistics
Matches: 461, Mismatches: 127, Indels: 52
0.72 0.20 0.08
Matches are distributed among these distances:
41 10 0.02
42 142 0.31
43 11 0.02
44 290 0.63
45 8 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (43 bp):
TCCACTACTGCTTAGGGAGATAAGATCTGCATCTTCAATCTAC
Found at i:91354026 original size:44 final size:44
Alignment explanation
Indices: 91353837--91354306 Score: 246
Period size: 44 Copynumber: 10.7 Consensus size: 44
91353827 GGTGGCTTAA
* * * * *
91353837 ATCTACTCCACTACTGCTTAGGGAGACAAGATTCGCCATTTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
* * ** * * * *
91353881 ATCTGCTCTACTGCAACTTCAGGGGGACAAGATCT-ACAATCTTC-
1 ATCTGCTCCACTACTGCTT-AGGGAGACAAGATTTGTC-GTCTTCG
* * * * * * **
91353925 AGCCTACTCCACTACTGCTTTAGGGAGATAGGA-TGGT-GGCTTAA
1 A-TCTGCTCCACTACTGC-TTAGGGAGACAAGATTTGTCGTCTTCG
*
91353969 ATCTGCTCCACTACTGCTTAGGGAGACAAAATTTGTCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
* * * * *
91354013 ATCTGCTCCACTACTGCTTAGGAAGATAAGATCT-ACAATCTTC-
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTC-GTCTTCG
* * * * * * * **
91354056 AGCCTACTCCACTACTGTTTAGGGAGATAGGA-TGGT-GGCTTAA
1 A-TCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
* * * * *
91354099 ATCTGCTCCACTGCTGCTTAGGAAGACAAGATTCGCCGTCTTTG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
* * * * *
91354143 ATCTGCTCCACT-GTAACTTCAGGGAGACAAGATCT-ACAATCTTC-
1 ATCTGCTCCACTACT-GCTT-AGGGAGACAAGATTTGTC-GTCTTCG
* * * * * * **
91354187 AGCCTACTCCACTACTGCTTTAGGGAGATAGGA-TGGT-GGCTTAA
1 A-TCTGCTCCACTACTGC-TTAGGGAGACAAGATTTGTCGTCTTCG
91354231 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
* *
91354275 ATCTGCTCCACTACTGCTTAGGAAGATAAGAT
1 ATCTGCTCCACTACTGCTTAGGGAGACAAGAT
91354307 CTGTGAATTT
Statistics
Matches: 309, Mismatches: 93, Indels: 48
0.69 0.21 0.11
Matches are distributed among these distances:
42 49 0.16
43 46 0.15
44 137 0.44
45 72 0.23
46 5 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
ATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTCTTCG
Found at i:91354240 original size:132 final size:132
Alignment explanation
Indices: 91353812--91354286 Score: 758
Period size: 132 Copynumber: 3.6 Consensus size: 132
91353802 TATCAACCGC
* * *
91353812 TTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACAAGATTCGCCATT
1 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCGTC
* * *
91353877 TTCGATCTGCTCTACTGCAACTTCAGGGGGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
66 TTCGATCTGCTCCACTGTAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
91353942 CT
131 CT
* * *
91353944 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAAATTTGTCGTC
1 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCGTC
* * * *
91354009 TTCGATCTGCTCCACTACT-GCTT-AGGAAGATAAGATCTACAATCTTCAGCCTACTCCACTACT
66 TTCGATCTGCTCCACT-GTAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACT
91354072 G-T
130 GCT
* *
91354074 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCTGCTTAGGAAGACAAGATTCGCCGTC
1 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCGTC
*
91354139 TTTGATCTGCTCCACTGTAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
66 TTCGATCTGCTCCACTGTAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
91354204 CT
131 CT
* *
91354206 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTCGTC
1 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCGTC
91354271 TTCGATCTGCTCCACT
66 TTCGATCTGCTCCACT
91354287 ACTGCTTAGG
Statistics
Matches: 311, Mismatches: 28, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
129 1 0.00
130 79 0.25
131 77 0.25
132 154 0.50
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (132 bp):
TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTCGCCGTC
TTCGATCTGCTCCACTGTAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
CT
Found at i:91354277 original size:262 final size:262
Alignment explanation
Indices: 91353812--91354308 Score: 906
Period size: 262 Copynumber: 1.9 Consensus size: 262
91353802 TATCAACCGC
*
91353812 TTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGGAGACAAGATTCGCCATT
1 TTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGAAGACAAGATTCGCCATT
* *
91353877 TTCGATCTGCTCTACTGCAACTTCAGGGGGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
66 TTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
91353942 CTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAAATTTGTCG
131 CTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAAATTTGTCG
91354007 TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAGCCTACTCCACTACT
196 TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAGCCTACTCCACTACT
91354072 GT
261 GT
* * *
91354074 TTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTGCTGCTTAGGAAGACAAGATTCGCCGTC
1 TTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGAAGACAAGATTCGCCAT-
*
91354139 TTT-GATCTGCTCCACTGTAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACT
65 TTTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACT
*
91354203 GCTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAGATTTGTC
130 GCTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAAATTTGTC
91354268 GTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCT
195 GTCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCT
91354309 GTGAATTTAC
Statistics
Matches: 226, Mismatches: 8, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
262 223 0.99
263 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (262 bp):
TTAGGGAGATAGGATGGTGGCTTAAATCTACTCCACTACTGCTTAGGAAGACAAGATTCGCCATT
TTCGATCTGCTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACTG
CTTTAGGGAGATAGGATGGTGGCTTAAATCTGCTCCACTACTGCTTAGGGAGACAAAATTTGTCG
TCTTCGATCTGCTCCACTACTGCTTAGGAAGATAAGATCTACAATCTTCAGCCTACTCCACTACT
GT
Done.