Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 93829987
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 4250000 characters in sequence are not A, C, G, or T
File 288 of 295
Found at i:91358269 original size:18 final size:19
Alignment explanation
Indices: 91358233--91358270 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
91358223 ATATGATAAA
*
91358233 ATGCAATGCAAATACAAAG
1 ATGCAATGCAAAAACAAAG
*
91358252 ATGC-ATGCAAAAAGAAAG
1 ATGCAATGCAAAAACAAAG
91358270 A
1 A
91358271 GAGGCGTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.55, C:0.13, G:0.18, T:0.13
Consensus pattern (19 bp):
ATGCAATGCAAAAACAAAG
Found at i:91361910 original size:34 final size:34
Alignment explanation
Indices: 91361871--91361945 Score: 91
Period size: 34 Copynumber: 2.3 Consensus size: 34
91361861 GCATATGTTT
* *
91361871 TATATAAATATTTTCTTTTAAATCCATTTATGTA
1 TATATAAATACTTTCTTCTAAATCCATTTATGTA
* **
91361905 TATATATATACTTTCTTCTAAATTTATTTATGTA
1 TATATAAATACTTTCTTCTAAATCCATTTATGTA
91361939 -A-ATAAAT
1 TATATAAAT
91361946 TTCTTTCTAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 5 0.14
33 1 0.03
34 29 0.83
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.52
Consensus pattern (34 bp):
TATATAAATACTTTCTTCTAAATCCATTTATGTA
Found at i:91376515 original size:16 final size:17
Alignment explanation
Indices: 91376484--91376517 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
91376474 AGATAAAAAT
*
91376484 GAATACTACGATATAAA
1 GAATAATACGATATAAA
91376501 GAATAATAC-ATATAAA
1 GAATAATACGATATAAA
91376517 G
1 G
91376518 CAAAAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.56, C:0.09, G:0.12, T:0.24
Consensus pattern (17 bp):
GAATAATACGATATAAA
Found at i:91377299 original size:10 final size:10
Alignment explanation
Indices: 91377268--91377300 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
91377258 ATTTAAGAAA
91377268 AATAATATAT
1 AATAATATAT
91377278 AATAAGTA-AT
1 AATAA-TATAT
91377288 AATAATATAT
1 AATAATATAT
91377298 AAT
1 AAT
91377301 TAAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 2 0.10
10 17 0.81
11 2 0.10
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (10 bp):
AATAATATAT
Found at i:91377299 original size:17 final size:18
Alignment explanation
Indices: 91377268--91377311 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
91377258 ATTTAAGAAA
91377268 AATAAT-ATATAATAAGT
1 AATAATAATATAATAAGT
*
91377285 AATAATAATAT-ATAATT
1 AATAATAATATAATAAGT
*
91377302 AAAAATAATA
1 AATAATAATA
91377312 CTTATAACAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 20 0.83
18 4 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AATAATAATATAATAAGT
Found at i:91377308 original size:20 final size:21
Alignment explanation
Indices: 91377226--91377311 Score: 78
Period size: 20 Copynumber: 4.3 Consensus size: 21
91377216 ATATGAAAAT
91377226 ATAATAATATATAA--AAGAGA
1 ATAATAATATATAATTAAGA-A
*
91377246 TGTAA-AATA-ATAATTTAAGAA
1 -ATAATAATATATAA-TTAAGAA
*
91377267 A-AATAATATATAA-TAAGTA
1 ATAATAATATATAATTAAGAA
91377286 ATAATAATATATAATTAA-AA
1 ATAATAATATATAATTAAGAA
91377306 ATAATA
1 ATAATA
91377312 CTTATAACAA
Statistics
Matches: 54, Mismatches: 4, Indels: 15
0.74 0.05 0.21
Matches are distributed among these distances:
19 12 0.22
20 27 0.50
21 11 0.20
22 4 0.07
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (21 bp):
ATAATAATATATAATTAAGAA
Found at i:91377326 original size:37 final size:32
Alignment explanation
Indices: 91377249--91377327 Score: 77
Period size: 37 Copynumber: 2.2 Consensus size: 32
91377239 AAAGAGATGT
*
91377249 AAAATAATAATTTAAGAAAAATAATATATAAT
1 AAAATAATAATTTAAGAAAAATAATATATAAC
*
91377281 AAGTAATAATAATATATAATTAAAAATAATACTTATAAC
1 AA--AATAATAAT-T-TAA-GAAAAATAATA--TATAAC
91377320 AAAATAAT
1 AAAATAAT
91377328 TTTATAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
32 2 0.05
34 9 0.24
35 1 0.03
36 3 0.08
37 16 0.42
39 7 0.18
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (32 bp):
AAAATAATAATTTAAGAAAAATAATATATAAC
Found at i:91388818 original size:17 final size:18
Alignment explanation
Indices: 91388786--91388820 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
91388776 CAAAAAATTA
*
91388786 TAAAATTTATTTAAAAAG
1 TAAAAATTATTTAAAAAG
91388804 TAAAAATTA-TTAAAAAG
1 TAAAAATTATTTAAAAAG
91388821 GTATAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (18 bp):
TAAAAATTATTTAAAAAG
Found at i:91390471 original size:20 final size:21
Alignment explanation
Indices: 91390429--91390473 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
91390419 GTGGAAGTCT
* *
91390429 ACACGCCCATGTGGAAGAGGC
1 ACACGCCCATCTGGAAGAAGC
91390450 ACACGCCCATCT-GAAGAAGC
1 ACACGCCCATCTGGAAGAAGC
91390470 ACAC
1 ACAC
91390474 ACCTGTGTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.33, C:0.33, G:0.24, T:0.09
Consensus pattern (21 bp):
ACACGCCCATCTGGAAGAAGC
Found at i:91392304 original size:103 final size:104
Alignment explanation
Indices: 91392125--91392389 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
91392115 AACCGTTATT
* * * *
91392125 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
91392190 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
91392228 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
91392292 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
91392332 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
91392390 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:91392751 original size:30 final size:29
Alignment explanation
Indices: 91392717--91392781 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
91392707 TAATCCACCA
91392717 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
91392747 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
91392777 CCCAA
1 CCCAA
91392782 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:91392755 original size:31 final size:30
Alignment explanation
Indices: 91392724--91392781 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91392714 CCACCCAACT
91392724 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
91392754 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
91392782 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:91399572 original size:103 final size:104
Alignment explanation
Indices: 91399393--91399657 Score: 417
Period size: 103 Copynumber: 2.6 Consensus size: 104
91399383 AACCGTTATT
* * * *
91399393 GGTGGATCTCGCACTTAGCACCACCACTTAATCGGGGAATCAGCACTTAGCAACCCCTTGGGGGA
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
** *
91399458 ATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATAC
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
91399496 GGTGGATATCGCACTTAGCACCACCAATGAA-CTGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 GGTGGATATCGCACTTAGCACCACCAATGAATC-GGGGAATCAGCACTTAGCAACCCCTCGGGGG
91399560 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
* **
91399600 GGTGGATATCGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
91399658 TTATGTACAA
Statistics
Matches: 149, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
102 1 0.01
103 82 0.55
104 65 0.44
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.20
Consensus pattern (104 bp):
GGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATAC
Found at i:91400019 original size:30 final size:29
Alignment explanation
Indices: 91399985--91400049 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
91399975 TAATCCACCA
91399985 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
91400015 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
91400045 CCCAA
1 CCCAA
91400050 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:91400023 original size:31 final size:30
Alignment explanation
Indices: 91399992--91400049 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
91399982 CCACCCAACT
91399992 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
91400022 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
91400050 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:91401823 original size:18 final size:18
Alignment explanation
Indices: 91401783--91401825 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
91401773 TTGGAAATTA
*
91401783 GTAAAAAATATTAGAAAT
1 GTAAAAAATATTACAAAT
*
91401801 ATAAAAAATA-TACAAAT
1 GTAAAAAATATTACAAAT
91401818 GGTAAAAA
1 -GTAAAAA
91401826 GAAATTATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.65, C:0.02, G:0.09, T:0.23
Consensus pattern (18 bp):
GTAAAAAATATTACAAAT
Found at i:91403863 original size:147 final size:140
Alignment explanation
Indices: 91403701--91403982 Score: 431
Period size: 140 Copynumber: 2.0 Consensus size: 140
91403691 AAAGGAAGGC
*
91403701 ATATAATATAATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAATATATATAT
1 ATATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATAT-AA-ATATATAT
* * * *
91403766 ACATACACATATAATAAAAACATACACTAATATTAATAATGATAATAATACTA-ACAATAGTAAT
64 ACAT----ATATAAT-AAAACATACACTAATAATAATAATAATAATAATAATAGA-AATAATAAT
91403830 GAAATACAAAAAAAGTAA
123 GAAATACAAAAAAAGTAA
91403848 ATATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATAC
1 ATATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATAC
*
91403913 ATATATAATAAAACATATACTAATAATAATAATAATAATAATAATAGAAATAATAATGAAATACA
66 ATATATAATAAAACATACACTAATAATAATAATAATAATAATAATAGAAATAATAATGAAATACA
91403978 AAAAA
131 AAAAA
91403983 TAAAATAATA
Statistics
Matches: 128, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
140 54 0.42
141 8 0.06
145 12 0.09
146 2 0.02
147 52 0.41
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (140 bp):
ATATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATATAC
ATATATAATAAAACATACACTAATAATAATAATAATAATAATAATAGAAATAATAATGAAATACA
AAAAAAGTAA
Found at i:91403866 original size:6 final size:6
Alignment explanation
Indices: 91403850--91404143 Score: 99
Period size: 6 Copynumber: 49.0 Consensus size: 6
91403840 AAAAGTAAAT
* *
91403850 ATAAT- ATAATA ATAATA TTAA-A ATAA-A GTAATA A-AA-A ATAATA
1 ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA ATAATA
* * *
91403893 CT-ATA TATAA-A TATATATA CATATATA ATAA-A ACATATA CTAATA
1 ATAATA -ATAATA -ATA-ATA -ATA-ATA ATAATA ATA-ATA ATAATA
* *
91403938 ATAATA ATAATA ATAATA ATAGA-A ATAATA ATGA-A ATACA-A AAAATA
1 ATAATA ATAATA ATAATA ATA-ATA ATAATA ATAATA ATA-ATA ATAATA
* *
91403985 A-AATA ATAAAA ATAA-A CATAAAA ATAA-A CATAA-A CATAAT- ATAATA
1 ATAATA ATAATA ATAATA -ATAATA ATAATA -ATAATA -ATAATA ATAATA
* * * *
91404031 ATAATA TTAA-A ATAA-A GTAATTA AAAATA ATACT- ATATATAA ATATATA
1 ATAATA ATAATA ATAATA ATAA-TA ATAATA ATAATA ATA-AT-A ATA-ATA
* *
91404080 TATACCTA TATAATA A-AA-A CATACACTA ATATTA ATAATA ATAATA
1 -ATA-ATA -ATAATA ATAATA -ATA-A-TA ATAATA ATAATA ATAATA
* *
91404126 ATACTA ATAGTA ATAATA
1 ATAATA ATAATA ATAATA
91404144 TTGAAATACA
Statistics
Matches: 227, Mismatches: 31, Indels: 61
0.71 0.10 0.19
Matches are distributed among these distances:
4 3 0.01
5 54 0.24
6 127 0.56
7 16 0.07
8 26 0.11
9 1 0.00
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (6 bp):
ATAATA
Found at i:91403930 original size:20 final size:19
Alignment explanation
Indices: 91403878--91403941 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
91403868 TAAAATAAAG
91403878 TAATAAAAAATAATACTATA
1 TAATAAAAAAT-ATACTATA
*
91403898 T-ATAAATATATATACATATA
1 TAATAAA-AAATATAC-TATA
*
91403918 TAATAAAACATATACTA-A
1 TAATAAAAAATATACTATA
91403936 TAATAA
1 TAATAA
91403942 TAATAATAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 7 0.18
19 11 0.28
20 16 0.41
21 5 0.13
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
TAATAAAAAATATACTATA
Found at i:91403948 original size:12 final size:12
Alignment explanation
Indices: 91403793--91404143 Score: 100
Period size: 12 Copynumber: 29.2 Consensus size: 12
91403783 AAACATACAC
*
91403793 TAATATTAATAA
1 TAATAATAATAA
* *
91403805 TGATAATAATAC
1 TAATAATAATAA
* *
91403817 TAACAATAGTAA
1 TAATAATAATAA
* *
91403829 TGA-AATACAAAA
1 TAATAATA-ATAA
*
91403841 AAAGTAA-ATATAA
1 TAA-TAATA-ATAA
91403854 T-ATAATAATAA
1 TAATAATAATAA
*
91403865 TATTAA-AATAA
1 TAATAATAATAA
*
91403876 -AGTAATAA-AA
1 TAATAATAATAA
*
91403886 -AATAATACT-A
1 TAATAATAATAA
91403896 TATATAA-ATATATA
1 TA-ATAATA-ATA-A
91403910 TACATATATAATAA
1 TA-ATA-ATAATAA
* *
91403924 -AACATATACTAA
1 TAATA-ATAATAA
91403936 TAATAATAATAA
1 TAATAATAATAA
91403948 TAATAATAATAGA
1 TAATAATAATA-A
*
91403961 -AATAATAATGA
1 TAATAATAATAA
*
91403972 -AATACA-AAAAA
1 TAATA-ATAATAA
91403983 TAA-AATAATAA
1 TAATAATAATAA
*
91403994 AAATAA-ACATAA
1 TAATAATA-ATAA
*
91404006 AAATAA-ACATAA
1 TAATAATA-ATAA
91404018 -ACATAAT-ATAA
1 TA-ATAATAATAA
*
91404029 TAATAATATTAA
1 TAATAATAATAA
*
91404041 -AATAA-AGTAA
1 TAATAATAATAA
* *
91404051 TTAAAAATAATAC
1 -TAATAATAATAA
91404064 T-ATATATAAATATA
1 TAATA-AT-AATA-A
*
91404078 TATATACCTATATAA
1 TA-ATA-ATA-ATAA
91404093 TAA-AA-ACATACA
1 TAATAATA-ATA-A
*
91404105 CTAATATTAATAA
1 -TAATAATAATAA
*
91404118 TAATAATAATAC
1 TAATAATAATAA
*
91404130 TAATAGTAATAA
1 TAATAATAATAA
91404142 TA
1 TA
91404144 TTGAAATACA
Statistics
Matches: 255, Mismatches: 46, Indels: 76
0.68 0.12 0.20
Matches are distributed among these distances:
10 18 0.07
11 58 0.23
12 126 0.49
13 21 0.08
14 15 0.06
15 9 0.04
16 8 0.03
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (12 bp):
TAATAATAATAA
Found at i:91404034 original size:170 final size:176
Alignment explanation
Indices: 91403845--91404156 Score: 519
Period size: 170 Copynumber: 1.8 Consensus size: 176
91403835 ACAAAAAAAG
*
91403845 TAAATATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATAT-AA-ATATA
1 TAAACATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATA
*
91403908 TATACATATATAAT-AAAACATATACT-A-A-TAATAATAATAATAATAATAATAGAAATAATAA
66 TATACATATATAATAAAAACATACACTAATATTAATAATAATAATAATAATAATAGAAATAATAA
91403969 TGAAATACAAAAAATAAAATAATAAAAATAAACATAAAAATAAACA
131 TGAAATACAAAAAATAAAATAATAAAAATAAACATAAAAATAAACA
*
91404015 TAAACATAATATAATAATAATATTAAAATAAAGTAATTAAAAATAATACTATATATAAATATATA
1 TAAACATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATA
* * * *
91404080 TATACCTATATAATAAAAACATACACTAATATTAATAATAATAATAATACTAATAGTAATAATAT
66 TATACATATATAATAAAAACATACACTAATATTAATAATAATAATAATAATAATAGAAATAATAA
91404145 TGAAATACAAAA
131 TGAAATACAAAA
91404157 GAAGCAAATG
Statistics
Matches: 129, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
170 54 0.42
171 2 0.02
172 18 0.14
173 11 0.09
174 1 0.01
175 1 0.01
176 42 0.33
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.30
Consensus pattern (176 bp):
TAAACATAATATAATAATAATATTAAAATAAAGTAATAAAAAATAATACTATATATAAATATATA
TATACATATATAATAAAAACATACACTAATATTAATAATAATAATAATAATAATAGAAATAATAA
TGAAATACAAAAAATAAAATAATAAAAATAAACATAAAAATAAACA
Found at i:91404062 original size:140 final size:139
Alignment explanation
Indices: 91403660--91404046 Score: 354
Period size: 140 Copynumber: 2.7 Consensus size: 139
91403650 CAAAATTAGT
* ** * * *
91403660 TAATAATAA-AACAATAAATAAAT-AAACACAAAAAGGAAGGCATATAATATAATAATAATATTA
1 TAATAATAATAACAAT-AAT-AATGAAATACAAAAA--AAGAAATATAAAATAATAATAAAAATA
* * *
91403723 AAATAAAGTAATTAAAAATAATACTATATATAAATATATATATACATACACATATAATAAAAACA
62 AAATAAAATAATAAAAAATAATACTATAAAT-AA-ATATATATACAT--A-A-ATAAT-AAAACA
* *
91403788 TACACTAATATTAATAATGA
120 TACACTAATAATAATAATAA
* * * * *
91403808 TAATAATACTAACAATAGTAATGAAATACAAAAAAAGTAAATATAATATAATAATAATATTAAAA
1 TAATAATAATAACAATAATAATGAAATACAAAAAAAG-AAATATAAAATAATAATAAAAATAAAA
* * * *
91403873 TAAAGTAATAAAAAATAATACTATATATAAATATATATACATATATAATAAAACATATACTAATA
65 TAAAATAATAAAAAATAATACTATAAATAAATATATATACATAAATAATAAAACATACACTAATA
91403938 ATAATAATAA
130 ATAATAATAA
91403948 TAATAATAATAGA-AATAATAATGAAATACAAAAAATA-AAATAATAAAAATAA-ACATAAAAAT
1 TAATAATAATA-ACAATAATAATGAAATACAAAAAA-AGAAAT-AT-AAAATAATA-ATAAAAAT
* *
91404010 AAACATAAACATAATATAATAATAATATTA-AAATAAA
61 AAA-ATAAA-ATAATA-AAAAATAATACTATAAATAAA
91404047 GTAATTAAAA
Statistics
Matches: 209, Mismatches: 19, Indels: 27
0.82 0.07 0.11
Matches are distributed among these distances:
139 4 0.02
140 57 0.27
141 22 0.11
142 5 0.02
143 12 0.06
144 11 0.05
145 12 0.06
146 5 0.02
147 55 0.26
148 20 0.10
149 6 0.03
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.28
Consensus pattern (139 bp):
TAATAATAATAACAATAATAATGAAATACAAAAAAAGAAATATAAAATAATAATAAAAATAAAAT
AAAATAATAAAAAATAATACTATAAATAAATATATATACATAAATAATAAAACATACACTAATAA
TAATAATAA
Found at i:91404191 original size:146 final size:148
Alignment explanation
Indices: 91404021--91404292 Score: 401
Period size: 152 Copynumber: 1.8 Consensus size: 148
91404011 AACATAAACA
91404021 TAATATAATAATAATATTAAAATAAAGTAATT-AAAAATAATACTATATATAAATAT-AT-ATAT
1 TAATATAATAATAATATTAAAATAAAGTAATTAAAAAATAATACTATATATAAATATAATAATAT
*
91404083 ACCTATATAAT-AAAAACATACACTAATATTAATAATAATAATAATACTAATAGTAATAATATTG
66 ACCTATATAATAAAAAACATACACTAATA-T-ATAATAATAATAATACTAATAATAATAATATTG
91404147 AAATACAAAAGAAGCAAATG
129 AAATACAAAAGAAGCAAATG
*
91404167 TAATATAATAGA-AATATTAAAATAAAGTAATTAAAAAAATAATACTATGTATAAATATAAATAC
1 TAATATAATA-ATAATATTAAAATAAAGTAATT-AAAAAATAATACTATATATAAATAT-AATA-
* * *
91404231 ATATACGTATATAATAAAAAAATATACACTAATATATAATAATAATAATAGTAATAATAATA
62 ATATACCTATATAAT-AAAAAACATACACTAATATATAATAATAATAATACTAATAATAATA
91404293 TAAAAAATAA
Statistics
Matches: 112, Mismatches: 5, Indels: 12
0.87 0.04 0.09
Matches are distributed among these distances:
146 30 0.27
147 1 0.01
148 23 0.21
150 2 0.02
152 39 0.35
153 1 0.01
154 16 0.14
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.32
Consensus pattern (148 bp):
TAATATAATAATAATATTAAAATAAAGTAATTAAAAAATAATACTATATATAAATATAATAATAT
ACCTATATAATAAAAAACATACACTAATATATAATAATAATAATACTAATAATAATAATATTGAA
ATACAAAAGAAGCAAATG
Found at i:91404274 original size:3 final size:3
Alignment explanation
Indices: 91404260--91404316 Score: 57
Period size: 3 Copynumber: 19.7 Consensus size: 3
91404250 AAATATACAC
*
91404260 TAA TATA TAA TAA TAA TAA TAG TAA TAA TAA T-A TAA -AA -AA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
91404303 AAA TAA AAA TAA TA
1 TAA TAA TAA TAA TA
91404317 GTGTTAGACA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 6 0.13
3 36 0.80
4 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:91406916 original size:88 final size:88
Alignment explanation
Indices: 91406804--91407235 Score: 598
Period size: 88 Copynumber: 4.9 Consensus size: 88
91406794 GCCATCATCC
* *
91406804 TAACCCCCTAAGCAATAGGGTAACAAGCTGAAGATTACAGATCTTATCTCCCTAAGCAGTAGCAG
1 TAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCAG
* *
91406869 AGCAGATTGAAGACGGTGAGCCT
66 AGTAGATCGAAGACGGTGAGCCT
* * *
91406892 TAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGATCTTATATCCCTATGCAGTAG-TG
1 TAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCAG
*
91406956 AAGCAGATCGAAGACGGTGAGCCT
66 -AGTAGATCGAAGACGGTGAGCCT
* * * * * * *
91406980 TAACACCTTAAGCAGTAGGGTAACAGGCTGAAAATTATAGATCTTATCTCCTTATGCAGTAGCGG
1 TAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCAG
*
91407045 AGTAGATAGAAGACGGTGAGCCT
66 AGTAGATCGAAGACGGTGAGCCT
* * * * *
91407068 TAACCCCCTAAACAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCTCCTTAAGCAGTAGCGG
1 TAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCAG
*
91407133 AGTAGATCGAAGACCGTGAGCCT
66 AGTAGATCGAAGACGGTGAGCCT
* * * *
91407156 TAATCCCCTAAGTAGTAGGGTAAC-AGACCGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTA
1 TAACCCCCTAAGCAGTAGGGTAACAAG-CTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCA
91407220 GAGTAGATCGAAGACG
65 GAGTAGATCGAAGACG
91407236 ACGAATCTTG
Statistics
Matches: 308, Mismatches: 33, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
87 2 0.01
88 305 0.99
89 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (88 bp):
TAACCCCCTAAGCAGTAGGGTAACAAGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGCAG
AGTAGATCGAAGACGGTGAGCCT
Found at i:91407033 original size:44 final size:44
Alignment explanation
Indices: 91406985--91407129 Score: 107
Period size: 44 Copynumber: 3.3 Consensus size: 44
91406975 AGCCTTAACA
91406985 CCTTAAGCAGTAGGGTAACAGGCTGAAAATTATAGATCTTATCT
1 CCTTAAGCAGTAGGGTAACAGGCTGAAAATTATAGATCTTATCT
* ** * * *** * * *
91407029 CCTTATGCAGTAGCGG-AGTA-GATAGAAGACGGT-GAGCCTTAACC
1 CCTTAAGCAGTAG-GGTAACAGGCT-GAAAATTATAGA-TCTTATCT
* * * *
91407073 CCCTAAACAGTAGGGTAACAGGCTGGAAATTACAGATCTTATCT
1 CCTTAAGCAGTAGGGTAACAGGCTGAAAATTATAGATCTTATCT
91407117 CCTTAAGCAGTAG
1 CCTTAAGCAGTAG
91407130 CGGAGTAGAT
Statistics
Matches: 67, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
43 6 0.09
44 55 0.82
45 6 0.09
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (44 bp):
CCTTAAGCAGTAGGGTAACAGGCTGAAAATTATAGATCTTATCT
Found at i:91407244 original size:44 final size:44
Alignment explanation
Indices: 91407108--91407526 Score: 236
Period size: 44 Copynumber: 9.6 Consensus size: 44
91407098 GAAATTACAG
* * *
91407108 ATCTTATCTCCTTAAGCAGTAGCGGAGTAGATCGAAGACCG-TGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGA-CGACGA
** * ** * * **
91407152 GCCTTAATC-CCCTAAGTAGTAG-GGTAACAGACCGAAAATTAC-A
1 ATCTT-ATCTCCCTAAGCAGTAGTGG-AGTAGATCGAAGACGACGA
*
91407195 GATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGACGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACGA
* ** * *
91407240 ATCTTGTCTCCCTAAGCAGTAGTGGAGTAGATTTAAG-CCAC-C
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACGA
* * *
91407282 ATCCTATCTCCCTAAGCAGTAGTGGAGTA-AGCTGAAGATTGTA-G-
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GAAGA-CG-ACGA
* * *
91407326 ATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACGA
** * * ** * *
91407370 ATCTTGCCTCCCTAAGTAGTAGTGGAGCAGATTTAAG-CCAC-T
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACGA
* * * * *
91407412 ATCCTATCTTCCTAAGCAGTAGTGGAGTA-AGCTAA-A-GATTGTA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGA-CG-A
* * ** *
91407455 GATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGATAACAA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACGA
* * * *
91407500 ATTTTGTTTTCCTAAGCAGTAGTGGAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAG
91407527 CATATTTAAG
Statistics
Matches: 278, Mismatches: 74, Indels: 46
0.70 0.19 0.12
Matches are distributed among these distances:
40 1 0.00
41 5 0.02
42 53 0.19
43 13 0.05
44 191 0.69
45 13 0.05
46 1 0.00
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGACGA
Found at i:91407319 original size:86 final size:86
Alignment explanation
Indices: 91407200--91407357 Score: 214
Period size: 86 Copynumber: 1.8 Consensus size: 86
91407190 TTACAGATCT
*
91407200 TATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGA-CG-ACGAATCTTGTCTCCCTAAGCAGTAGT
1 TATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGATCGTA-G-ATCTTATCTCCCTAAGCAGTAGT
*
91407263 GGAGTAGATTTAAGCCACCATCC
64 GGAGCAGATTTAAGCCACCATCC
* * * *
91407286 TATCTCCCTAAGCAGTAGTGGAGTA-AGCTGAAGATTGTAGATCTTATCTCCTTAAGCAGTAGTG
1 TATCTCCCTAAGCAGTAGTAGAGTAGATC-GAAGATCGTAGATCTTATCTCCCTAAGCAGTAGTG
91407350 GAGCAGAT
65 GAGCAGAT
91407358 CGAAGACGGC
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
85 2 0.03
86 58 0.92
87 2 0.03
88 1 0.02
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (86 bp):
TATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGATCGTAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATTTAAGCCACCATCC
Found at i:91407594 original size:130 final size:130
Alignment explanation
Indices: 91407194--91407568 Score: 570
Period size: 130 Copynumber: 2.9 Consensus size: 130
91407184 CGAAAATTAC
* *
91407194 AGATCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAG
*
91407259 TAGTGGAGTAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAAGCTGAAGATTGT
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAAGCTGAAGATTGT
* * * *
91407324 AGATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTGCCTCCCTAAGTAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAG
* * *
91407389 TAGTGGAGCAGATTTAAGCCACTATCCTATCTTCCTAAGCAGTAGTGGAGTAAGCTAAAGATTGT
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAAGCTGAAGATTGT
* ** * * * *
91407454 AGATCTTATCTCCCTCAGCAGTAGTGGAGCAGATCGAAGATAACAAATTTTGTTTTCCTAAGCAG
1 AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAG
* * *
91407519 TAGTGGAGCATATTTAAGCCACCATCCTATCTCCCTAAACAATAGTGGAG
66 TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAG
91407569 CAGGTTGAAA
Statistics
Matches: 219, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 219 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (130 bp):
AGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTGTCTCCCTAAGCAG
TAGTGGAGCAGATTTAAGCCACCATCCTATCTCCCTAAGCAGTAGTGGAGTAAGCTGAAGATTGT
Found at i:91407697 original size:88 final size:88
Alignment explanation
Indices: 91407582--91408482 Score: 1130
Period size: 88 Copynumber: 10.3 Consensus size: 88
91407572 GTTGAAATCA
** *
91407582 ACAATTCGTATCTAATTGAAGTTCCAGCGGAGTAGATTGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
91407647 TGACAATGAAGCGGCTCGAAGCC
66 TGGCATTGAAGCGGCTCGAAGCC
91407670 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTA-AAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
91407734 TGGCATTGGAGCGGCTCGAAGCC
66 TGGCATTGAAGCGGCTCGAAGCC
* * * * * * *
91407757 ACAGTTCGTATCTCTTTGAAGTTCCAGTGGAGTAGATCGAGGCTACAAATCCCTTCTCCTTAAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* **
91407822 TGGCATTGGAGCGATTCGAAGCC
66 TGGCATTGAAGCGGCTCGAAGCC
* * * * * *
91407845 ACAGTTGGTATCTCCTTGAAGTTTCATCGGAGTAGATCGAGGCTACAAATCTCTTCTCCCTGATA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * *
91407910 TTGTATTGAAACGGCTCGAAGCC
66 TGGCATTGAAGCGGCTCGAAGCC
* * * * *
91407933 ACAGTTCGTATCTCCTTGAAGTTTCAGCGGAGTAGATCAAAGCTACAAATCTATTCTCCTTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
91407998 TGGTATT-AGAGCGGCTCTAAGCC
66 TGGCATTGA-AGCGGCTCGAAGCC
** * * ** * * *
91408021 ACAATTTTTATCTCTTTGAAATTTTAGCGGAGTAGATTGAAACTATAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
91408086 TGGCATTGGAGCGGCTTGAAGCC
66 TGGCATTGAAGCGGCTCGAAGCC
* * *
91408109 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAGGCTACAAAACTGTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
*
91408174 TGGCATTGGAA-CAGCTCGAAGCC
66 TGGCATT-GAAGCGGCTCGAAGCC
* * * *
91408197 GCAATTCGTATCTCTTTGAAGTT-CATGCGGAGTAGATCGAGGCTACAAATCTTTTCTCCCTGAA
1 ACAATTCGTATCTCCTTGAAGTTCCA-GCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAA
* *
91408261 ATGGCATTGGAGCGACTCGAAGCC
65 ATGGCATTGAAGCGGCTCGAAGCC
* *
91408285 ACAATTTGTATCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* *
91408350 TGGTATTGGAA-CGGCTCAAAGCC
66 TGGCATT-GAAGCGGCTCGAAGCC
* *
91408373 ACAATTCTTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTGCCTGAAA
1 ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
* * *
91408438 TGGCATTGGAGC-GATTGAAGCC
66 TGGCATTGAAGCGGCTCGAAGCC
** * *
91408460 ACAAACCTTATCTCCCTGAAGTT
1 ACAATTCGTATCTCCTTGAAGTT
91408483 ACAGTGGGGC
Statistics
Matches: 704, Mismatches: 100, Indels: 19
0.86 0.12 0.02
Matches are distributed among these distances:
87 114 0.16
88 584 0.83
89 6 0.01
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (88 bp):
ACAATTCGTATCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGCTACAAATCTCTTCTCCCTGAAA
TGGCATTGAAGCGGCTCGAAGCC
Found at i:91407753 original size:43 final size:43
Alignment explanation
Indices: 91407620--91407755 Score: 112
Period size: 44 Copynumber: 3.1 Consensus size: 43
91407610 GGAGTAGATT
*
91407620 GAAGCTACAAATCTCTTCTCCCTGAAATGACAATGAAGCGGCTC
1 GAAGCTA-AAATCTCTTCTCCCTGAAATGACAATGGAGCGGCTC
* * * * ** ** ** *
91407664 GAAGCCACAAT-TCGTATCTCCTTGAAGTTCCAGCGGAGTAGATC
1 GAAGCTAAAATCTC-T-TCTCCCTGAAATGACAATGGAGCGGCTC
* *
91407708 GAAGCTAAAATCTCTTCTCCCTGAAATGGCATTGGAGCGGCTC
1 GAAGCTAAAATCTCTTCTCCCTGAAATGACAATGGAGCGGCTC
91407751 GAAGC
1 GAAGC
91407756 CACAGTTCGT
Statistics
Matches: 66, Mismatches: 23, Indels: 7
0.69 0.24 0.07
Matches are distributed among these distances:
42 2 0.03
43 28 0.42
44 34 0.52
45 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.24
Consensus pattern (43 bp):
GAAGCTAAAATCTCTTCTCCCTGAAATGACAATGGAGCGGCTC
Found at i:91408648 original size:45 final size:45
Alignment explanation
Indices: 91408599--91408705 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
91408589 AAGCTATAAA
* *
91408599 CCTTATCCCCCTGAAGTTGT-AATAGGGCAGGTTAAAGTTACGAGT
1 CCTTATCCCCCTGAAGTT-TCAATAGGGCAAGTTAAAGTTACAAGT
* * *
91408644 CCTTATCCCTCTGAAGTTTCAGTAGGGCAAGTTGAAGTTACAAGT
1 CCTTATCCCCCTGAAGTTTCAATAGGGCAAGTTAAAGTTACAAGT
*
91408689 -CTTATCTCCCTGAAGTT
1 CCTTATCCCCCTGAAGTT
91408706 ACAGTGGAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
44 16 0.30
45 38 0.70
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (45 bp):
CCTTATCCCCCTGAAGTTTCAATAGGGCAAGTTAAAGTTACAAGT
Found at i:91409869 original size:36 final size:36
Alignment explanation
Indices: 91409828--91409916 Score: 142
Period size: 36 Copynumber: 2.5 Consensus size: 36
91409818 TATAACACTA
* *
91409828 CCAAAACGTCGCCGTTTCATTTAGTTGCAAAACACC
1 CCAAAACGGCACCGTTTCATTTAGTTGCAAAACACC
*
91409864 CCAAAACGGCATCGTTTCATTTAGTTGCAAAACACC
1 CCAAAACGGCACCGTTTCATTTAGTTGCAAAACACC
*
91409900 CCAAAACGGCATCGTTT
1 CCAAAACGGCACCGTTT
91409917 AGGCGCCAGA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (36 bp):
CCAAAACGGCACCGTTTCATTTAGTTGCAAAACACC
Found at i:91410439 original size:10 final size:10
Alignment explanation
Indices: 91410424--91410513 Score: 99
Period size: 10 Copynumber: 8.6 Consensus size: 10
91410414 TTGCTATATG
91410424 TATATACATA
1 TATATACATA
91410434 TATATACATA
1 TATATACATA
91410444 TGTATATACATA
1 --TATATACATA
* *
91410456 TGTATATATA
1 TATATACATA
*
91410466 CATATACATA
1 TATATACATA
91410476 TATATACATA
1 TATATACATA
91410486 TGTATATACATA
1 --TATATACATA
**
91410498 TATATGTATA
1 TATATACATA
91410508 TATATA
1 TATATA
91410514 TTTTAATTCT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
10 47 0.70
12 20 0.30
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (10 bp):
TATATACATA
Found at i:91410447 original size:22 final size:22
Alignment explanation
Indices: 91410419--91410502 Score: 127
Period size: 22 Copynumber: 3.9 Consensus size: 22
91410409 TTTATTTGCT
91410419 ATATGTATATACATATATATAC
1 ATATGTATATACATATATATAC
*
91410441 ATATGTATATACATATGTAT--
1 ATATGTATATACATATATATAC
**
91410461 ATATACATATACATATATATAC
1 ATATGTATATACATATATATAC
91410483 ATATGTATATACATATATAT
1 ATATGTATATACATATATAT
91410503 GTATATATAT
Statistics
Matches: 54, Mismatches: 6, Indels: 4
0.84 0.09 0.06
Matches are distributed among these distances:
20 17 0.31
22 37 0.69
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (22 bp):
ATATGTATATACATATATATAC
Found at i:91410475 original size:42 final size:42
Alignment explanation
Indices: 91410425--91410513 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
91410415 TGCTATATGT
*
91410425 ATATACATATATATACATATGTATATACATATGTATATATAC
1 ATATACATATATATACATATGTATATACATATATATATATAC
* *
91410467 ATATACATATATATACATATGTATATACATATATATGTATAT
1 ATATACATATATATACATATGTATATACATATATATATATAC
91410509 ATATA
1 ATATA
91410514 TTTTAATTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (42 bp):
ATATACATATATATACATATGTATATACATATATATATATAC
Found at i:91410507 original size:6 final size:6
Alignment explanation
Indices: 91410418--91410514 Score: 86
Period size: 6 Copynumber: 16.2 Consensus size: 6
91410408 GTTTATTTGC
* * * * * *
91410418 TATATG TATATA CATATA TATACA TATGTA TATACA TATGTA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
* * * * * *
91410466 CATATA CATATA TATACA TATGTA TATACA TATATA TGTATA TATATA
1 TATATA TATATA TATATA TATATA TATATA TATATA TATATA TATATA
91410514 T
1 T
91410515 TTTAATTCTT
Statistics
Matches: 70, Mismatches: 21, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 70 1.00
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.43
Consensus pattern (6 bp):
TATATA
Found at i:91410508 original size:22 final size:22
Alignment explanation
Indices: 91410418--91410514 Score: 126
Period size: 22 Copynumber: 4.5 Consensus size: 22
91410408 GTTTATTTGC
91410418 TATATGTATATACATATATATA
1 TATATGTATATACATATATATA
* *
91410440 CATATGTATATACATATGTATA
1 TATATGTATATACATATATATA
*
91410462 TATA--CATATACATATATATA
1 TATATGTATATACATATATATA
* *
91410482 CATATGTATATACATATATATG
1 TATATGTATATACATATATATA
*
91410504 TATATATATAT
1 TATATGTATAT
91410515 TTTAATTCTT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.27
22 46 0.73
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.43
Consensus pattern (22 bp):
TATATGTATATACATATATATA
Found at i:91410620 original size:22 final size:22
Alignment explanation
Indices: 91410595--91410642 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
91410585 TTTACGCCTT
* * *
91410595 TATTGTTATTAATTTTTTTATC
1 TATTATTATTAATTTATTCATC
91410617 TATTATTATTAATTTATTCATC
1 TATTATTATTAATTTATTCATC
91410639 TATT
1 TATT
91410643 TGTTTATCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTATTATTAATTTATTCATC
Found at i:91416136 original size:11 final size:11
Alignment explanation
Indices: 91416120--91416159 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
91416110 TATTTTCTTA
91416120 TATTTTGCTAC
1 TATTTTGCTAC
* *
91416131 TATTTTACTAT
1 TATTTTGCTAC
*
91416142 TATATTGCTAC
1 TATTTTGCTAC
91416153 TATTTTG
1 TATTTTG
91416160 TTGTTATTGT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.57
Consensus pattern (11 bp):
TATTTTGCTAC
Found at i:91416241 original size:30 final size:30
Alignment explanation
Indices: 91416201--91416259 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
91416191 TTTTATTGTT
*
91416201 ATTTTTTTATTATTTTA-AAGACATTTGCTA
1 ATTTTGTTATTATTTTAGAA-ACATTTGCTA
91416231 ATTTTGTTATTATTTTAGAAACATTTGCT
1 ATTTTGTTATTATTTTAGAAACATTTGCT
91416260 TGTTAAATTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.93
31 2 0.07
ACGTcount: A:0.29, C:0.07, G:0.08, T:0.56
Consensus pattern (30 bp):
ATTTTGTTATTATTTTAGAAACATTTGCTA
Found at i:91416411 original size:12 final size:11
Alignment explanation
Indices: 91416381--91416413 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
91416371 TATATTTTTT
91416381 AAAATAATATA
1 AAAATAATATA
91416392 AAAATAATATA
1 AAAATAATATA
91416403 AAAATTAATAT
1 AAAA-TAATAT
91416414 GGGCGGATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
AAAATAATATA
Found at i:91419667 original size:21 final size:21
Alignment explanation
Indices: 91419643--91419682 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
91419633 GACCTAAATT
91419643 TTAAAGTTC-GAAAAATAAAGA
1 TTAAAGTTCTG-AAAATAAAGA
*
91419664 TTAAATTTCTGAAAATAAA
1 TTAAAGTTCTGAAAATAAA
91419683 AATATGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.30
Consensus pattern (21 bp):
TTAAAGTTCTGAAAATAAAGA
Found at i:91420618 original size:9 final size:10
Alignment explanation
Indices: 91420595--91420640 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
91420585 ACTTCTACTT
*
91420595 TTTTTTTGAA
1 TTTTTATGAA
91420605 TTTTTATGAA
1 TTTTTATGAA
91420615 TTTTTTAT-ATA
1 -TTTTTATGA-A
91420626 TTTTT-TGAA
1 TTTTTATGAA
91420635 TTTTTA
1 TTTTTA
91420641 AAAGTTTTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
9 7 0.23
10 16 0.52
11 8 0.26
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.70
Consensus pattern (10 bp):
TTTTTATGAA
Found at i:91420648 original size:29 final size:30
Alignment explanation
Indices: 91420596--91420662 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 30
91420586 CTTCTACTTT
* * *
91420596 TTTTTTGAATTTTTATGAATTTTTTATATA
1 TTTTTTGAATTTTTATAAAGTTTTAATATA
*
91420626 TTTTTTGAATTTTTA-AAAGTTTTAATTTA
1 TTTTTTGAATTTTTATAAAGTTTTAATATA
*
91420655 TTTATTGA
1 TTTTTTGA
91420663 TGACGCATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 17 0.53
30 15 0.47
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.64
Consensus pattern (30 bp):
TTTTTTGAATTTTTATAAAGTTTTAATATA
Found at i:91423932 original size:24 final size:22
Alignment explanation
Indices: 91423886--91423958 Score: 56
Period size: 24 Copynumber: 3.0 Consensus size: 22
91423876 TATAAATTGT
*
91423886 AATATATATTAGTATTAGAATATTA
1 AATA-ATATTA-T-TTAAAATATTA
* *
91423911 ACATAATATTTTTTAATAATATATT
1 A-ATAATATTATTTAA-AATAT-TA
91423936 AATAATATTATTTAAAATTATTA
1 AATAATATTATTTAAAA-TATTA
91423959 TAGTTAATTT
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
23 6 0.15
24 22 0.56
25 8 0.21
26 3 0.08
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (22 bp):
AATAATATTATTTAAAATATTA
Found at i:91424117 original size:21 final size:22
Alignment explanation
Indices: 91424085--91424127 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
91424075 ATATTTAATA
91424085 ATATTAAATATTATAATATTTG
1 ATATTAAATATTATAATATTTG
*
91424107 ATATT-AATATTTTAATATTTG
1 ATATTAAATATTATAATATTTG
91424128 TAGAAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (22 bp):
ATATTAAATATTATAATATTTG
Found at i:91425840 original size:17 final size:18
Alignment explanation
Indices: 91425804--91425852 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
91425794 TTAAACTCCT
**
91425804 TAAAATTATAAAAATTTA
1 TAAAATTATAAAAAGATA
91425822 TAAAATT-TAAAAAGATA
1 TAAAATTATAAAAAGATA
91425839 T-AAATTATAAAAAG
1 TAAAATTATAAAAAG
91425853 TCAAATTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 5 0.18
17 16 0.57
18 7 0.25
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (18 bp):
TAAAATTATAAAAAGATA
Found at i:91430348 original size:20 final size:21
Alignment explanation
Indices: 91430300--91430348 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
91430290 GAATTAATTA
*
91430300 AAATTTTAAAATTAATTTTTT
1 AAATTTTTAAATTAATTTTTT
* *
91430321 ATAGTTTTAAA-TAATTTTTT
1 AAATTTTTAAATTAATTTTTT
91430341 AAATTTTT
1 AAATTTTT
91430349 TTTAATTTAA
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (21 bp):
AAATTTTTAAATTAATTTTTT
Found at i:91431920 original size:16 final size:16
Alignment explanation
Indices: 91431895--91431926 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
91431885 TTAGTTTATA
*
91431895 ATTAATCATAATTAAC
1 ATTAAGCATAATTAAC
91431911 ATTAAGCATAATTAAC
1 ATTAAGCATAATTAAC
91431927 CAATTTGGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.50, C:0.12, G:0.03, T:0.34
Consensus pattern (16 bp):
ATTAAGCATAATTAAC
Found at i:91434705 original size:181 final size:181
Alignment explanation
Indices: 91434400--91434768 Score: 621
Period size: 181 Copynumber: 2.0 Consensus size: 181
91434390 TATTTTATGT
* * *
91434400 AAATTTGACGGTGGGTGCTCCGACAACAAATGTAGCATTCTATAGCTCGGACCCAGTGGCCGGGT
1 AAATTTGACGGTGGGTGCTCCGACAACAAATGTAGCATCCTATAGCTCAGACCCAGTGACCGGGT
* * *
91434465 TGGGCGAGGAGTGCTATAGAATCCCAAATGATTTAAGAATTATTTAAGCTAGGCAACCTCTTGCA
66 TGGGCGAGGAGTGCTACAGAATCCCAAATGATTCAAGAATTATTTAAGCTAGACAACCTCTTGCA
*
91434530 CTGCAATAAAAATTCTCACAAACTCAACTTCCATTGTGGACAATACAATAC
131 CTGCAAGAAAAATTCTCACAAACTCAACTTCCATTGTGGACAATACAATAC
* *
91434581 AAATTTGACGGTGGGTGCTCCGACAACGAATGTAGCATCCTGTAGCTCAGACCCAGTGACCGGGT
1 AAATTTGACGGTGGGTGCTCCGACAACAAATGTAGCATCCTATAGCTCAGACCCAGTGACCGGGT
*
91434646 TGGGTGAGGAGTGCTACAGAATCCCAAATGATTCAAGAATTATTTAAGCTAGACAACCTCTTGCA
66 TGGGCGAGGAGTGCTACAGAATCCCAAATGATTCAAGAATTATTTAAGCTAGACAACCTCTTGCA
* *
91434711 CTGCAAGAAAAGTTCTCACAAACTCAACTTCCATTGTGGACAATGCAATAC
131 CTGCAAGAAAAATTCTCACAAACTCAACTTCCATTGTGGACAATACAATAC
*
91434762 AAGTTTG
1 AAATTTG
91434769 TTTCATACTG
Statistics
Matches: 175, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
181 175 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (181 bp):
AAATTTGACGGTGGGTGCTCCGACAACAAATGTAGCATCCTATAGCTCAGACCCAGTGACCGGGT
TGGGCGAGGAGTGCTACAGAATCCCAAATGATTCAAGAATTATTTAAGCTAGACAACCTCTTGCA
CTGCAAGAAAAATTCTCACAAACTCAACTTCCATTGTGGACAATACAATAC
Found at i:91435499 original size:21 final size:21
Alignment explanation
Indices: 91435441--91435499 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
91435431 ATATAATATT
91435441 TTAATAAATAAA-AAA-TTAAA
1 TTAATAAA-AAATAAATTTAAA
*
91435461 TTAATAAAAATTAAATTTAAA
1 TTAATAAAAAATAAATTTAAA
*
91435482 -TAATATAAAAATACATTT
1 TTAATA-AAAAATAAATTT
91435500 CAAAATTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 2 0.06
20 16 0.48
21 15 0.45
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.36
Consensus pattern (21 bp):
TTAATAAAAAATAAATTTAAA
Found at i:91438066 original size:22 final size:23
Alignment explanation
Indices: 91438015--91438067 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 23
91438005 AATTTACTAT
* *
91438015 TATCATTATTTATTTTTATATTA
1 TATCATAATTTATTATTATATTA
*
91438038 TAT-ATAATTTATTATTATGTTA
1 TATCATAATTTATTATTATATTA
91438060 T-TCATAAT
1 TATCATAAT
91438068 ATTTATACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 1 0.04
22 22 0.85
23 3 0.12
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (23 bp):
TATCATAATTTATTATTATATTA
Found at i:91438079 original size:24 final size:26
Alignment explanation
Indices: 91438033--91438106 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 26
91438023 TTTATTTTTA
* *
91438033 TATTATATATAATTTATTA-TTATGT
1 TATTATAAATTATTTATTACTTATGT
91438058 TATTCAT-AA-TATTTA-TACTTATG-
1 TATT-ATAAATTATTTATTACTTATGT
91438081 TATTATAAATTATTTATTAC-TATGT
1 TATTATAAATTATTTATTACTTATGT
91438106 T
1 T
91438107 TACCTCTGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
22 2 0.05
23 8 0.20
24 20 0.49
25 9 0.22
26 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (26 bp):
TATTATAAATTATTTATTACTTATGT
Found at i:91442860 original size:15 final size:13
Alignment explanation
Indices: 91442826--91442853 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
91442816 ACATCAATTA
91442826 ATTTTTTTGATAT
1 ATTTTTTTGATAT
91442839 ATTTTTTTGATAT
1 ATTTTTTTGATAT
91442852 AT
1 AT
91442854 AATTTTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (13 bp):
ATTTTTTTGATAT
Found at i:91445186 original size:85 final size:86
Alignment explanation
Indices: 91445042--91445212 Score: 274
Period size: 85 Copynumber: 2.0 Consensus size: 86
91445032 CAAACAAGTG
* *
91445042 GTGGCTCGTCCACAAAATCCAGTGACAATTTGTTTAATCTGCAAATATGTTGTGCACTCATAACA
1 GTGGCTCGTCCACAAAACCCAGTGACAATTTGTTTAATCTGCAAATATGTTGTGCACTCACAACA
91445107 AGTGGCAATAACTGCAAATAT
66 AGTGGCAATAACTGCAAATAT
* *
91445128 GTGGCTCGTCCAC-AAACCCAGTGGCAGTTTGTTTAATCTGC-AATCATGTTGTGCACTCACAAC
1 GTGGCTCGTCCACAAAACCCAGTGACAATTTGTTTAATCTGCAAAT-ATGTTGTGCACTCACAAC
*
91445191 AAGTGGCAATAATTGCAAATAT
65 AAGTGGCAATAACTGCAAATAT
91445213 TTTTATCTAA
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
84 3 0.04
85 63 0.80
86 13 0.16
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.29
Consensus pattern (86 bp):
GTGGCTCGTCCACAAAACCCAGTGACAATTTGTTTAATCTGCAAATATGTTGTGCACTCACAACA
AGTGGCAATAACTGCAAATAT
Found at i:91453845 original size:43 final size:43
Alignment explanation
Indices: 91453796--91454122 Score: 142
Period size: 44 Copynumber: 7.4 Consensus size: 43
91453786 GAAGCAGGTC
*
91453796 GAAGACATAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
1 GAAGACAAAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
* * * * ** ** * * *
91453839 GAAGACAAAAGATCTTGCCTTCCTAC-ATTGACAGCGAAGCAGATC
1 GAAGACAAAA-ACCTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTT
*
91453884 GAAGACACAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
1 GAAGACAAAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
* * * * ** ** * * *
91453927 GAAGACAAAAGATCTTGCCTTCCTAC-ATTGACAGCGAAGCAGATC
1 GAAGACAAAA-ACCTTGCC-TCTTTCGGTTGTGATAG-AGCTGGTT
** * *
91453972 GAAGACCCAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
1 GAAGACAAAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
* * * ** * * *
91454015 GAAGAAAAAAGATCTTG-CT-TTCCTGCAT-TGACAGCGAAGCAGGTC
1 GAAGACAAAA-ACCTTGCCTCTTTC-GGTTGTGATA--G-AGCTGGTT
* * * *
91454060 GAAAAGACAAACCTTGCCTCTCTCGGTTGTGATAGAGCTGGTT
1 GAAGACAAAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
*
91454103 GAAGACAAAAGATCTTGCCT
1 GAAGACAAAA-ACCTTGCCT
91454123 TCCTACATTA
Statistics
Matches: 190, Mismatches: 77, Indels: 33
0.63 0.26 0.11
Matches are distributed among these distances:
42 5 0.03
43 59 0.31
44 68 0.36
45 52 0.27
46 6 0.03
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (43 bp):
GAAGACAAAAACCTTGCCTCTTTCGGTTGTGATAGAGCTGGTT
Found at i:91453907 original size:88 final size:88
Alignment explanation
Indices: 91453758--91454369 Score: 842
Period size: 88 Copynumber: 7.0 Consensus size: 88
91453748 CAATGAAGTT
* * * * *
91453758 AAAGATCTTGCCTTCCTGCATTGATAGTGAAGCAGGTCGAAGACATAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
91453823 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
* *
91453846 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
91453911 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
* *
91453934 AAAGATCTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACCCAAACCTTGCCTCTCTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
* *
91453999 TGTGATGGAGCTGGTTGAAGAAA
66 TGTGATAGAGCTGGTTGAAGACA
* * * *
91454022 AAAGATCTTGCTTTCCTGCATTGACAGCGAAGCAGGTCGAAAAGACAAACCTTGCCTCTCTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
91454087 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATAGAGCTGGTTGAAGACA
* *
91454110 AAAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
* *
91454175 TGTGATGGAGCTGGTTGAAGAAAA
66 TGTGATAGAGCTGGTTGAAG-ACA
* *
91454199 AAAGATCTTGCTTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTCTCTCGA
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTCTCG-
*
91454262 G-TGTAGA-AGAGTTGGTTGAAGACA
64 GTTGT-GATAGAGCTGGTTGAAGACA
** * ** * * * *
91454286 ACTGATTTTATCTTCCTGCGTTGACAGTGAAGCAGGTCGAAG--ACAAACCTTACCTCTCTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
*
91454349 TGT-AGTGGAGCTGGTTGAAGA
66 TGTGA-TAGAGCTGGTTGAAGA
91454370 ATTGCAGATC
Statistics
Matches: 473, Mismatches: 43, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
84 1 0.00
85 1 0.00
86 29 0.06
87 43 0.09
88 355 0.75
89 44 0.09
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (88 bp):
AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGT
TGTGATAGAGCTGGTTGAAGACA
Found at i:91459478 original size:29 final size:30
Alignment explanation
Indices: 91459410--91459489 Score: 99
Period size: 29 Copynumber: 2.7 Consensus size: 30
91459400 AAATATATAT
* *
91459410 ATTAGGAGCTCAATTGATTGTCAACTTTCA
1 ATTAGGGGCTTAATTGATTGTCAACTTTCA
** * *
91459440 ATTAATGGCTTAATTTATTG-CAATTTTCA
1 ATTAGGGGCTTAATTGATTGTCAACTTTCA
91459469 ATTAGGGGCTTAATTGATTGT
1 ATTAGGGGCTTAATTGATTGT
91459490 ATTCTTAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
29 25 0.62
30 15 0.38
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.42
Consensus pattern (30 bp):
ATTAGGGGCTTAATTGATTGTCAACTTTCA
Found at i:91462839 original size:11 final size:11
Alignment explanation
Indices: 91462823--91462848 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
91462813 TTCCTTACTT
91462823 TTTTTTTTCCC
1 TTTTTTTTCCC
91462834 TTTTTTTTCCC
1 TTTTTTTTCCC
91462845 TTTT
1 TTTT
91462849 ATAATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTTTTTCCC
Found at i:91468588 original size:19 final size:19
Alignment explanation
Indices: 91468564--91468619 Score: 103
Period size: 19 Copynumber: 2.9 Consensus size: 19
91468554 ATAATCTTTA
*
91468564 ATGATATGCAAACTTAGAT
1 ATGATATGCAATCTTAGAT
91468583 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
91468602 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
91468620 AGATATGATT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:91468655 original size:21 final size:23
Alignment explanation
Indices: 91468598--91468655 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 23
91468588 ATGCAATCTT
* *
91468598 AGATATG-ATATGCAATCTTAGA
1 AGATATGAATTTGTAATCTTAGA
*
91468620 AGATATGATTTTGTAATCTTA-A
1 AGATATGAATTTGTAATCTTAGA
*
91468642 AGAT-TTAATTTGTA
1 AGATATGAATTTGTA
91468656 GATACCTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
21 8 0.27
22 12 0.40
23 10 0.33
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (23 bp):
AGATATGAATTTGTAATCTTAGA
Found at i:91477715 original size:220 final size:220
Alignment explanation
Indices: 91476901--91477715 Score: 1289
Period size: 220 Copynumber: 3.7 Consensus size: 220
91476891 GTAACAGGCT
* * * * * *
91476901 AAAG-CATAACAGATTTGACCTTCAGGTGTTTACGCTGAAACGGATCCAAGATGATTTAACATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCT
*
91476965 CTGTATTTTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
** *
91477030 CGAAGACATAGCAGATCTAACCTTTGGATGTCTTCACATCGAAGTAAATCCAAGATGATTTGGCA
131 CGAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGCA
91477095 TCCTTGCGTTGACAAGGAGCAGAT-
196 TCCTTGCGTTGACAAGGAGCAGATC
* *
91477119 AGAAGACATAGCAGATTTGG-TCTTCAGGTGTTTACGCTGAAGCGGATCCAAGATGATTTAACAT
1 A-AAGACATAGCAGATTTGGCT-TTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACAT
*
91477183 CTCTGTATTGTCAGAGAACAAATCAAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAG
64 CTCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAG
*
91477248 ATCGAAGACATAGCAGATCTAACCTTC-GAATGTCTTCACATTGAAGTAGATCCAAGATGATTTG
129 ATCGAAGACATAGCAGATCTAACCTTCAG-ATGTCTTCACATCGAAGTAGATCCAAGATGATTTG
91477312 GCATCCTTGCGTTGACAAGGAGCAGATC
193 GCATCCTTGCGTTGACAAGGAGCAGATC
* * *
91477340 GAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGA-ATC
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTT-AACATC
* *
91477404 TCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGTAGA
65 TCTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGA
* *
91477469 TCGAAGACATAGCAGATCTAACCTTCAGATGTTTTCACATCGAAGTAGATCCAAGATGATTAGGC
130 TCGAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGC
*
91477534 ATCATTGCGTTGACAAGGAGCAGATC
195 ATCCTTGCGTTGACAAGGAGCAGATC
* **
91477560 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCT
1 AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCT
* * * *
91477625 CTGTACTATCAGAGAACAAATCGAAGAAACAAATTTGGCATCTCCATATTCGACGGAGAGCAGAT
66 CTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
*
91477690 CGAAGACATAGCAGATCTGACCTTCA
131 CGAAGACATAGCAGATCTAACCTTCA
91477716 TTGAAGTAGA
Statistics
Matches: 560, Mismatches: 28, Indels: 16
0.93 0.05 0.03
Matches are distributed among these distances:
218 1 0.00
219 5 0.01
220 551 0.98
221 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (220 bp):
AAAGACATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCT
CTGTATTGTCAGAGAACAAATCAAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGAT
CGAAGACATAGCAGATCTAACCTTCAGATGTCTTCACATCGAAGTAGATCCAAGATGATTTGGCA
TCCTTGCGTTGACAAGGAGCAGATC
Found at i:91477771 original size:78 final size:78
Alignment explanation
Indices: 91477657--91478105 Score: 659
Period size: 78 Copynumber: 5.8 Consensus size: 78
91477647 GAAGAAACAA
** * *
91477657 ATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
*
91477722 TAGATCCAAGATG
66 CAGATCCAAGATG
* * * *
91477735 ATTTGGCATATCTGTATTATACGGGGAGCAAATCGAAGACACAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
91477800 CAGATCCAAGATG
66 CAGATCCAAGATG
* ** * * * *
91477813 ATTTGGCATTTCCATATTCGACTGAGAGCAGATTGAAGACATAGCAGATCTGACCTTCATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
91477878 CAGATCCAAGATG
66 CAGATCCAAGATG
* * * *
91477891 ATTTGGCATCTGTTTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTTATTGAAG
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
*
91477956 TAGATCCAAGATG
66 CAGATCCAAGATG
* * *
91477969 ATTTGGTATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACA-AT-TGGACCTTTATTGAA
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAA
91478032 GCAGATCCAAGATG
65 GCAGATCCAAGATG
91478046 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
91478106 GTGTTTACAT
Statistics
Matches: 329, Mismatches: 39, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
76 1 0.00
77 72 0.22
78 255 0.78
79 1 0.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
ATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAG
CAGATCCAAGATG
Found at i:91478248 original size:89 final size:89
Alignment explanation
Indices: 91478136--91478304 Score: 257
Period size: 89 Copynumber: 1.9 Consensus size: 89
91478126 CCAAGATGAT
* *
91478136 AGATTTGACATCTCTGTATTAGACAGGGAGTAAATCGGAGATAACAGATTTGGCATCTCTGTATT
1 AGATTTGACATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
91478201 AGACAGGGAGCAGATTGAAAAAGC
66 AGACAGGGAGCAGATTGAAAAAGC
* * * * * *
91478225 AGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCATTTTTGTATT
1 AGATTTGACATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
*
91478290 AGACGGGGAGCAGAT
66 AGACAGGGAGCAGAT
91478305 CAAAGATAGT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.27
Consensus pattern (89 bp):
AGATTTGACATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
AGACAGGGAGCAGATTGAAAAAGC
Found at i:91478289 original size:134 final size:137
Alignment explanation
Indices: 91478045--91478299 Score: 306
Period size: 134 Copynumber: 1.9 Consensus size: 137
91478035 GATCCAAGAT
* *
91478045 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGA
* *
91478110 TTACATCGAAGCAGATCCAAGATGATAGATTTGACATCTCTGTATTAGACAGGGAGTAAATCGGA
66 TTACATCGAAGCAGATCCAAGATAACAGATTTGACATCTCTGTATTAGACAGGGAGTAAATCGGA
91478175 GATAACA
131 GATAACA
* * * *
91478182 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATTGAA-A-A-AGCAGATTTGGCGTCTC-TGT-
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCT-TCATGTG
* * * * * * *
91478242 ATTAGA-CGGGGAGCAGATCGAAGATAACAGATTTGGCATTTTTGTATTAGACGGGGAG
65 ATTACATC--GAAGCAGATCCAAGATAACAGATTTGACATCTCTGTATTAGACAGGGAG
91478300 CAGATCAAAG
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
132 1 0.01
133 4 0.04
134 55 0.55
135 3 0.03
136 1 0.01
137 36 0.36
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (137 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGA
TTACATCGAAGCAGATCCAAGATAACAGATTTGACATCTCTGTATTAGACAGGGAGTAAATCGGA
GATAACA
Found at i:91478311 original size:45 final size:45
Alignment explanation
Indices: 91478045--91478312 Score: 229
Period size: 45 Copynumber: 5.9 Consensus size: 45
91478035 GATCCAAGAT
* * *
91478045 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATC-AA-AGATAACA
* * * * * * * * * *
91478092 GATCTGACCT-TCATGTGTT-TACATCGAAGCAGATCCAAGATGATA
1 GATTTGGCATCTC-TGTATTAGACA-GGGAGCAGATCAAAGATAACA
* * * **
91478137 GATTTGACATCTCTGTATTAGACAGGGAGTAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGATAACA
* *
91478182 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATTGAAA-A-AGCA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGA-TCAAAGATAACA
* * *
91478226 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGATAACA
* * *
91478271 GATTTGGCATTTTTGTATTAGACGGGGAGCAGATCAAAGATA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGATA
91478313 GTAGATATCG
Statistics
Matches: 173, Mismatches: 41, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
43 3 0.02
44 35 0.20
45 102 0.59
46 12 0.07
47 21 0.12
ACGTcount: A:0.32, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGATAACA
Found at i:91478695 original size:17 final size:18
Alignment explanation
Indices: 91478676--91478738 Score: 76
Period size: 17 Copynumber: 3.5 Consensus size: 18
91478666 AATGATATGT
91478676 AATCTTAGATATGATAT-
1 AATCTTAGATATGATATC
*
91478693 AATATTAGATATGAT-TGC
1 AATCTTAGATATGATAT-C
*
91478711 AGTCTTAGATATGATATGC
1 AATCTTAGATATGATAT-C
91478730 AATCTTAGA
1 AATCTTAGA
91478739 AGATATGATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
16 1 0.03
17 14 0.36
18 13 0.33
19 11 0.28
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.38
Consensus pattern (18 bp):
AATCTTAGATATGATATC
Found at i:91478745 original size:17 final size:19
Alignment explanation
Indices: 91478667--91478738 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
91478657 ATAATCTTCA
*
91478667 ATGATATGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
91478686 ATGATAT--AATATTAGAT
1 ATGATATGCAATCTTAGAT
*
91478703 ATGAT-TGCAGTCTTAGAT
1 ATGATATGCAATCTTAGAT
91478721 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
91478739 AGATATGATT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.02
17 14 0.30
18 13 0.28
19 18 0.39
ACGTcount: A:0.38, C:0.07, G:0.17, T:0.39
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:91479063 original size:12 final size:10
Alignment explanation
Indices: 91479028--91479055 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
91479018 TGTTTCCCTG
91479028 TTTTTTTATA
1 TTTTTTTATA
91479038 TTTTTTTATA
1 TTTTTTTATA
91479048 TTTTTTTA
1 TTTTTTTA
91479056 ATAATTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:91481380 original size:26 final size:26
Alignment explanation
Indices: 91481351--91481402 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
91481341 AAGGAAACCA
91481351 TTAAGAAATAAGTGCAACATTTATTC
1 TTAAGAAATAAGTGCAACATTTATTC
* *
91481377 TTAAGAAATGAGTGTAACATTTATTC
1 TTAAGAAATAAGTGCAACATTTATTC
91481403 ATGAAACAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (26 bp):
TTAAGAAATAAGTGCAACATTTATTC
Found at i:91483135 original size:23 final size:22
Alignment explanation
Indices: 91483083--91483157 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
91483073 CCTGATCAGT
** *
91483083 ATACGACACATAAAGTGCCT-A
1 ATACGACACACGAGGTGCCTGA
*
91483104 AAACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
91483125 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACGAGGTGCCTG-A
91483148 ATACGACACA
1 ATACGACACA
91483158 TAAAGTGTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
21 36 0.78
23 10 0.22
ACGTcount: A:0.39, C:0.27, G:0.21, T:0.13
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:91483169 original size:23 final size:23
Alignment explanation
Indices: 91483083--91483169 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
91483073 CCTGATCAGT
*
91483083 ATACGACACATAAAGTGCCT-AA
1 ATACGACACACAAAGTGCCTGAA
* *
91483105 A-ACGACACACGAGGTGCCTG--
1 ATACGACACACAAAGTGCCTGAA
* *
91483125 ATACGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCTGAA
* *
91483148 ATACGACACATAAAGTGTCTGA
1 ATACGACACACAAAGTGCCTGA
91483170 TCAATAAAGC
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.02
21 34 0.63
22 1 0.02
23 18 0.33
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
ATACGACACACAAAGTGCCTGAA
Found at i:91483565 original size:15 final size:15
Alignment explanation
Indices: 91483540--91483596 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
91483530 TCATGTATAT
91483540 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
91483556 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
91483571 -ATAATTTCAATCAA
1 TATAAATTCAATCAA
91483585 TATAAATTCAAT
1 TATAAATTCAAT
91483597 AAATTCATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 13 0.34
15 21 0.55
16 4 0.11
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:91483581 original size:29 final size:27
Alignment explanation
Indices: 91483543--91483600 Score: 98
Period size: 29 Copynumber: 2.1 Consensus size: 27
91483533 TGTATATTAT
91483543 ATAATTCAATCAATATAAATTCAATCAA
1 ATAATTCAATCAATATAAATTCAAT-AA
91483571 ATAATTTCAATCAATATAAATTCAATAA
1 ATAA-TTCAATCAATATAAATTCAATAA
91483599 AT
1 AT
91483601 TCATCGCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
28 8 0.28
29 21 0.72
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (27 bp):
ATAATTCAATCAATATAAATTCAATAA
Found at i:91488053 original size:15 final size:15
Alignment explanation
Indices: 91488030--91488059 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
91488020 CAGAAAAACA
*
91488030 AACATTTAAATAATT
1 AACACTTAAATAATT
91488045 AACACTTAAATAATT
1 AACACTTAAATAATT
91488060 TTACCCAGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (15 bp):
AACACTTAAATAATT
Found at i:91491415 original size:2 final size:2
Alignment explanation
Indices: 91491408--91491432 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
91491398 CAAAAATCTT
91491408 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
91491433 TGCATAATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91498067 original size:13 final size:13
Alignment explanation
Indices: 91498051--91498088 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
91498041 TTTAAATCAA
*
91498051 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
*
91498064 ACTTTTCATAAGC
1 ACTTTTCAAAAGC
91498077 ACTTTTCAAAAG
1 ACTTTTCAAAAG
91498089 TAACGAGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:91498778 original size:13 final size:14
Alignment explanation
Indices: 91498753--91498781 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
91498743 ACTCTCCTGA
91498753 AACATATAAATTTC
1 AACATATAAATTTC
91498767 AACATA-AAATTTC
1 AACATATAAATTTC
91498780 AA
1 AA
91498782 AGTATATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (14 bp):
AACATATAAATTTC
Found at i:91500690 original size:12 final size:12
Alignment explanation
Indices: 91500659--91500692 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
91500649 TCAAATCCAA
*
91500659 ATATCTAAATTC
1 ATATTTAAATTC
91500671 ATTATTTAAATTC
1 A-TATTTAAATTC
91500684 ATATTTAAA
1 ATATTTAAA
91500693 CTCAATCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATTTAAATTC
Found at i:91506133 original size:45 final size:45
Alignment explanation
Indices: 91506076--91506290 Score: 168
Period size: 45 Copynumber: 4.8 Consensus size: 45
91506066 TATGCATTTC
* * *
91506076 CGAA-GTAGTGCCACAGTATCTTTCAACTATGGTTTTGA-TCATTAT
1 CGAATGTAATGCCACAGTATCTTTCAACTATGGTCTT-ATTC-GTAT
* * *
91506121 C-AATGTGATGCCATAGTATATTTCAACTATGGTCTTATTCGTAT
1 CGAATGTAATGCCACAGTATCTTTCAACTATGGTCTTATTCGTAT
* * ** * *
91506165 CGGATTTAATGCCACAGTATCTTTCAACTATGGTCTTACACATTT
1 CGAATGTAATGCCACAGTATCTTTCAACTATGGTCTTATTCGTAT
* * * * * * * *
91506210 CTAGTTTAGTGCCATAGTATCTTTCAACTATAGTCTTATTCATTT
1 CGAATGTAATGCCACAGTATCTTTCAACTATGGTCTTATTCGTAT
* * * *
91506255 TG-ATTTAATGTCATAGTATCTTTCAACTATGGTCTT
1 CGAATGTAATGCCACAGTATCTTTCAACTATGGTCTT
91506291 TCTCATTTCG
Statistics
Matches: 138, Mismatches: 29, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
44 37 0.27
45 101 0.73
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (45 bp):
CGAATGTAATGCCACAGTATCTTTCAACTATGGTCTTATTCGTAT
Found at i:91506289 original size:89 final size:90
Alignment explanation
Indices: 91506084--91506299 Score: 260
Period size: 90 Copynumber: 2.4 Consensus size: 90
91506074 TCCGAAGTAG
* * * *
91506084 TGCCACAGTATCTTTCAACTATGGTTTTGA-TCATTATC-AATGT-GATGCCATAGTATATTTCA
1 TGCCACAGTATCTTTCAACTATGGTCTT-ACACATT-TCTAGTTTAG-TGCCATAGTATATTTCA
* *
91506146 ACTATGGTCTTATTCGTATCGGATTTAA
63 ACTATAGTCTTATTCATATCGGATTTAA
*
91506174 TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCTAGTTTAGTGCCATAGTATCTTTCAACT
1 TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCTAGTTTAGTGCCATAGTATATTTCAACT
**
91506239 ATAGTCTTATTCAT-TTTGATTTAA
66 ATAGTCTTATTCATATCGGATTTAA
* * * *
91506263 TGTCATAGTATCTTTCAACTATGGTCTTTCTCATTTC
1 TGCCACAGTATCTTTCAACTATGGTCTTACACATTTC
91506300 GGGTAAAATG
Statistics
Matches: 110, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
89 44 0.40
90 65 0.59
91 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.13, T:0.44
Consensus pattern (90 bp):
TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCTAGTTTAGTGCCATAGTATATTTCAACT
ATAGTCTTATTCATATCGGATTTAA
Found at i:91506335 original size:89 final size:89
Alignment explanation
Indices: 91506084--91506343 Score: 253
Period size: 89 Copynumber: 2.9 Consensus size: 89
91506074 TCCGAAGTAG
* * * * *
91506084 TGCCACAGTATCTTTCAACTATGGTTTTGA-TCATTATCAATGT--GATGCCATAGTATATTTCA
1 TGCCACAGTATCTTTCAACTATGGTCTT-ACACATT-TCGA-GTAAAATGCCATAGTATCTTTCA
* *
91506146 ACTATGGTCTTATTCGTATCGGATTTAA
63 ACTATGGTCTTATTCAT-TTGGATTTAA
* ** *
91506174 TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCTAGTTTAGTGCCATAGTATCTTTCAACT
1 TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCGAGTAAAATGCCATAGTATCTTTCAACT
* *
91506239 ATAGTCTTATTCATTTTGATTTAA
66 ATGGTCTTATTCATTTGGATTTAA
* * * * *
91506263 TGTCATAGTATCTTTCAACTATGGTCTTTCTCATTTCGGGTAAAATGCCAT-GATATCTTTCAA-
1 TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCGAGTAAAATGCCATAG-TATCTTTCAAC
91506326 TCATGGTCTT-TCTCATTT
65 T-ATGGTCTTAT-TCATTT
91506344 CTCGATCCAA
Statistics
Matches: 144, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
88 5 0.03
89 77 0.53
90 62 0.43
ACGTcount: A:0.25, C:0.18, G:0.13, T:0.43
Consensus pattern (89 bp):
TGCCACAGTATCTTTCAACTATGGTCTTACACATTTCGAGTAAAATGCCATAGTATCTTTCAACT
ATGGTCTTATTCATTTGGATTTAA
Found at i:91516434 original size:7 final size:7
Alignment explanation
Indices: 91516407--91516447 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
91516397 AAGTAGGTTG
91516407 TATATTA
1 TATATTA
*
91516414 TAT-TTC
1 TATATTA
91516420 TAATATTA
1 T-ATATTA
91516428 TATATTA
1 TATATTA
91516435 TATATTA
1 TATATTA
91516442 T-TATTA
1 TATATTA
91516448 ATTCATATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 8 0.27
7 19 0.63
8 3 0.10
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (7 bp):
TATATTA
Found at i:91537458 original size:31 final size:32
Alignment explanation
Indices: 91537406--91537472 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 32
91537396 AACCTTATGT
91537406 GTTT-TAAACAACTAATGCGTGAGCTTAAAAA
1 GTTTATAAACAACTAATGCGTGAGCTTAAAAA
91537437 GTTTATAAACAACT-ATGCGTGAGCTTAAAAA
1 GTTTATAAACAACTAATGCGTGAGCTTAAAAA
91537468 GTTTA
1 GTTTA
91537473 GTAAGCGGCT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 26 0.74
32 9 0.26
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.31
Consensus pattern (32 bp):
GTTTATAAACAACTAATGCGTGAGCTTAAAAA
Found at i:91538171 original size:14 final size:14
Alignment explanation
Indices: 91538152--91538181 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
91538142 AATGAGACTT
91538152 TAAGGATGTTACAA
1 TAAGGATGTTACAA
91538166 TAAGGATGTTACAA
1 TAAGGATGTTACAA
91538180 TA
1 TA
91538182 GTATTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.20, T:0.30
Consensus pattern (14 bp):
TAAGGATGTTACAA
Found at i:91539964 original size:13 final size:12
Alignment explanation
Indices: 91539948--91539985 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
91539938 AGTGAACAAT
91539948 AGAAATAAGTAAA
1 AGAAATAAG-AAA
91539961 AGAAA-AAGAAA
1 AGAAATAAGAAA
91539972 AGGAAATAAGAAA
1 A-GAAATAAGAAA
91539985 A
1 A
91539986 TCTTTGCAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 4 0.17
12 7 0.30
13 12 0.52
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (12 bp):
AGAAATAAGAAA
Found at i:91549773 original size:20 final size:21
Alignment explanation
Indices: 91549750--91549797 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
91549740 GATTAATAGT
*
91549750 GTAGTTTACTCTAAAACTT-A
1 GTAGTTTACCCTAAAACTTAA
91549770 GTAGTTTACCCTAAAACTTAA
1 GTAGTTTACCCTAAAACTTAA
91549791 GTAGTTT
1 GTAGTTT
91549798 TGTACACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (21 bp):
GTAGTTTACCCTAAAACTTAA
Found at i:91551030 original size:17 final size:16
Alignment explanation
Indices: 91551010--91551056 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
91551000 AAATTTAATT
91551010 AAAAAATAAAATTAAC
1 AAAAAATAAAATTAAC
*
91551026 AAAAAAATATAAA-TATC
1 -AAAAAATA-AAATTAAC
*
91551043 AAAAATTAAAATTA
1 AAAAAATAAAATTA
91551057 TCATTATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 3 0.12
16 9 0.35
17 11 0.42
18 3 0.12
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAAATAAAATTAAC
Found at i:91551058 original size:16 final size:16
Alignment explanation
Indices: 91551010--91551059 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
91551000 AAATTTAATT
*
91551010 AAAAAATAAAATTAAC
1 AAAAAATAAAATTATC
91551026 AAAAAAATATAAA-TATC
1 -AAAAAATA-AAATTATC
*
91551043 AAAAATTAAAATTATC
1 AAAAAATAAAATTATC
91551059 A
1 A
91551060 TTATGCTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
15 3 0.10
16 12 0.41
17 11 0.38
18 3 0.10
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAAAATAAAATTATC
Found at i:91556078 original size:6 final size:6
Alignment explanation
Indices: 91556067--91556110 Score: 52
Period size: 6 Copynumber: 7.0 Consensus size: 6
91556057 ATTTAGCCAT
* *
91556067 TTTTTA TTTTTA TTTTAATA TTTTTA TTTTTA ATTTAA TTTTTA
1 TTTTTA TTTTTA TTTT--TA TTTTTA TTTTTA TTTTTA TTTTTA
91556111 CATTTTAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
6 26 0.81
8 6 0.19
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTTTA
Found at i:91556092 original size:20 final size:19
Alignment explanation
Indices: 91556065--91556109 Score: 72
Period size: 20 Copynumber: 2.3 Consensus size: 19
91556055 TAATTTAGCC
*
91556065 ATTTTTTATTTTTATTTTA
1 ATTTTTTATTTTTAATTTA
91556084 ATATTTTTATTTTTAATTTA
1 AT-TTTTTATTTTTAATTTA
91556104 ATTTTT
1 ATTTTT
91556110 ACATTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (19 bp):
ATTTTTTATTTTTAATTTA
Found at i:91556115 original size:20 final size:20
Alignment explanation
Indices: 91556067--91556121 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
91556057 ATTTAGCCAT
* *
91556067 TTTTTATTTTTATTTTAATA
1 TTTTCATTTTTAATTTAATA
*
91556087 TTTTTATTTTTAATTTAAT-
1 TTTTCATTTTTAATTTAATA
91556106 TTTTACA-TTTTAATTT
1 TTTT-CATTTTTAATTT
91556122 TCCGTTTCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 13 0.41
20 19 0.59
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTCATTTTTAATTTAATA
Found at i:91556119 original size:14 final size:13
Alignment explanation
Indices: 91556065--91556122 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 13
91556055 TAATTTAGCC
* *
91556065 ATTTTTTATTTTT
1 ATTTTTAATTTTA
* *
91556078 ATTTTAATATTTTT
1 ATTTTTA-ATTTTA
91556092 ATTTTTAA-TTTA
1 ATTTTTAATTTTA
91556104 ATTTTTACATTTTA
1 ATTTTTA-ATTTTA
91556118 ATTTT
1 ATTTT
91556123 CCGTTTCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
12 10 0.26
13 7 0.18
14 21 0.55
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTAATTTTA
Found at i:91557658 original size:18 final size:18
Alignment explanation
Indices: 91557635--91557670 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
91557625 AAGAAAACAA
91557635 GAGCATAAATCGGTGGTT
1 GAGCATAAATCGGTGGTT
*
91557653 GAGCATAAGTCGGTGGTT
1 GAGCATAAATCGGTGGTT
91557671 AGAGAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.11, G:0.36, T:0.28
Consensus pattern (18 bp):
GAGCATAAATCGGTGGTT
Found at i:91557986 original size:52 final size:52
Alignment explanation
Indices: 91557904--91558055 Score: 164
Period size: 52 Copynumber: 2.9 Consensus size: 52
91557894 AAAGTTTTTA
* * *
91557904 GGGTTCGGAGGAAATAAAAGTTTTGA-GAGAAAGCAAAAGGAAAAAAAATTGG
1 GGGTTTGG-GGAAGTAAAAGTTTTGAGGAGAAAGCAAAAGGAAAAAAAATTAG
* ****
91557956 GGGTTTGGGGAAGTAAAAGTTTTGAGGAGAAAGTAAAAGGAAAATTTTTTTAG
1 GGGTTTGGGGAAGTAAAAGTTTTGAGGAGAAAGCAAAAGGAAAA-AAAATTAG
* *
91558009 GGGTTTGGAGGGAAGTAAAACTTTTGAGG-GAAATCAAAAGGAAAAAA
1 GGGTTT-G-GGGAAGTAAAAGTTTTGAGGAGAAAGCAAAAGGAAAAAA
91558056 GTTATTCGAT
Statistics
Matches: 83, Mismatches: 13, Indels: 7
0.81 0.13 0.07
Matches are distributed among these distances:
51 16 0.19
52 24 0.29
53 9 0.11
54 15 0.18
55 19 0.23
ACGTcount: A:0.43, C:0.03, G:0.32, T:0.22
Consensus pattern (52 bp):
GGGTTTGGGGAAGTAAAAGTTTTGAGGAGAAAGCAAAAGGAAAAAAAATTAG
Found at i:91558388 original size:47 final size:47
Alignment explanation
Indices: 91558314--91558412 Score: 189
Period size: 47 Copynumber: 2.1 Consensus size: 47
91558304 AAATCATCCA
*
91558314 GATATGTTTCTATGGCCTAATTCGATTCGATTCATGAAACAAGGGAT
1 GATAAGTTTCTATGGCCTAATTCGATTCGATTCATGAAACAAGGGAT
91558361 GATAAGTTTCTATGGCCTAATTCGATTCGATTCATGAAACAAGGGAT
1 GATAAGTTTCTATGGCCTAATTCGATTCGATTCATGAAACAAGGGAT
91558408 GATAA
1 GATAA
91558413 TTGCTTCGAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.32
Consensus pattern (47 bp):
GATAAGTTTCTATGGCCTAATTCGATTCGATTCATGAAACAAGGGAT
Found at i:91559120 original size:25 final size:25
Alignment explanation
Indices: 91559091--91559146 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
91559081 ATAAACTTCC
*
91559091 AAATCAATCAATTATCT-G-AAAATGA
1 AAATCAAT-AATTATATAGCAAAAT-A
*
91559116 AAATCTATAATTATATAGCAAAATA
1 AAATCAATAATTATATAGCAAAATA
91559141 AAATCA
1 AAATCA
91559147 TTGTCGGTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 7 0.27
25 14 0.54
26 5 0.19
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (25 bp):
AAATCAATAATTATATAGCAAAATA
Found at i:91564589 original size:21 final size:20
Alignment explanation
Indices: 91564563--91564621 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 20
91564553 CAATTTTTTT
91564563 AAAAAAATTATAAAAATTAAA
1 AAAAAAATTA-AAAAATTAAA
* *
91564584 AAAAAAACTAAAAAGTATAAA
1 AAAAAAATTAAAAAAT-TAAA
* *
91564605 AAGAAAGTTAAAAAATT
1 AAAAAAATTAAAAAATT
91564622 TCTAGAATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (20 bp):
AAAAAAATTAAAAAATTAAA
Found at i:91564732 original size:16 final size:16
Alignment explanation
Indices: 91564713--91564743 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
91564703 TTGAAAAAGT
91564713 TTTCAAATATATGTGG
1 TTTCAAATATATGTGG
*
91564729 TTTCAAATTTATGTG
1 TTTCAAATATATGTG
91564744 CTCTAACATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATGTGG
Found at i:91572321 original size:2 final size:2
Alignment explanation
Indices: 91572316--91572350 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
91572306 TTTTTTCTTT
*
91572316 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91572351 ATCGCTCGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:91582872 original size:6 final size:6
Alignment explanation
Indices: 91582862--91582893 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
91582852 CATTTAACCT
*
91582862 ATATAT ATATAC ATATAC ATATAC ATATAC AT
1 ATATAC ATATAC ATATAC ATATAC ATATAC AT
91582894 GACTCATGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (6 bp):
ATATAC
Found at i:91583365 original size:23 final size:24
Alignment explanation
Indices: 91583334--91583381 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
91583324 AGATACGCGG
*
91583334 ATTCCACCCAAACACA-TCAGAAT
1 ATTCAACCCAAACACACTCAGAAT
*
91583357 ATTCAACCCAAACACACTCGGAAT
1 ATTCAACCCAAACACACTCAGAAT
91583381 A
1 A
91583382 ATATAAATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.44, C:0.33, G:0.06, T:0.17
Consensus pattern (24 bp):
ATTCAACCCAAACACACTCAGAAT
Found at i:91583427 original size:27 final size:27
Alignment explanation
Indices: 91583397--91583455 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
91583387 AATCCTCATT
*
91583397 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACAACAGTAT-ATCATAGCCTCCCA
* *
91583424 AACACAACGGTATATCATATCCTCCCA
1 AACACAACAGTATATCATAGCCTCCCA
91583451 AACAC
1 AACAC
91583456 GCCAATAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.07
27 26 0.93
ACGTcount: A:0.41, C:0.34, G:0.07, T:0.19
Consensus pattern (27 bp):
AACACAACAGTATATCATAGCCTCCCA
Found at i:91584390 original size:12 final size:12
Alignment explanation
Indices: 91584373--91584402 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
91584363 TCCCCCTTTT
91584373 TTTTTCTTCCCC
1 TTTTTCTTCCCC
91584385 TTTTTCTTCCCC
1 TTTTTCTTCCCC
*
91584397 TGTTTC
1 TTTTTC
91584403 CATTTTGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.37, G:0.03, T:0.60
Consensus pattern (12 bp):
TTTTTCTTCCCC
Found at i:91584580 original size:41 final size:41
Alignment explanation
Indices: 91584534--91584621 Score: 117
Period size: 41 Copynumber: 2.1 Consensus size: 41
91584524 AATATTTTTA
* *
91584534 TTATAATTGTCATTATT-CAATTTATTTATTATA-AAAAAATT
1 TTATAATT-TAATTATTAC-ATTTACTTATTATATAAAAAATT
91584575 TTATAATTTAATTATTATCATTTACTTATTATATAAAAAATT
1 TTATAATTTAATTATTA-CATTTACTTATTATATAAAAAATT
91584617 TTATA
1 TTATA
91584622 TATATATTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
40 7 0.17
41 21 0.50
42 14 0.33
ACGTcount: A:0.42, C:0.05, G:0.01, T:0.52
Consensus pattern (41 bp):
TTATAATTTAATTATTACATTTACTTATTATATAAAAAATT
Found at i:91584597 original size:14 final size:14
Alignment explanation
Indices: 91584531--91584607 Score: 59
Period size: 14 Copynumber: 5.6 Consensus size: 14
91584521 ACCAATATTT
*
91584531 TTATTATAATTGTCA
1 TTATTATAATT-TAA
* *
91584546 TTATT-CAATTTAT
1 TTATTATAATTTAA
***
91584559 TTATTATAAAAAAA
1 TTATTATAATTTAA
91584573 TT-TTATAATTTAA
1 TTATTATAATTTAA
* *
91584586 TTATTATCATTTAC
1 TTATTATAATTTAA
91584600 TTATTATA
1 TTATTATA
91584608 TAAAAAATTT
Statistics
Matches: 46, Mismatches: 14, Indels: 5
0.71 0.22 0.08
Matches are distributed among these distances:
13 16 0.35
14 25 0.54
15 5 0.11
ACGTcount: A:0.39, C:0.05, G:0.01, T:0.55
Consensus pattern (14 bp):
TTATTATAATTTAA
Found at i:91584874 original size:3 final size:3
Alignment explanation
Indices: 91584866--91584910 Score: 54
Period size: 3 Copynumber: 14.7 Consensus size: 3
91584856 TTTTAAATCA
* * *
91584866 AAT AAT AAT AAT AAT AGT AAT AAT ATT AAC AAT AAT AATT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AA
91584911 AATCTAAGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:91585652 original size:17 final size:18
Alignment explanation
Indices: 91585632--91585666 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
91585622 TATTTTTTTA
91585632 AATAATTTT-TAAAATAC
1 AATAATTTTATAAAATAC
*
91585649 AATAGTTTTATAAAATAC
1 AATAATTTTATAAAATAC
91585667 TCGAACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (18 bp):
AATAATTTTATAAAATAC
Found at i:91597986 original size:21 final size:21
Alignment explanation
Indices: 91597962--91598002 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
91597952 TAAATGAAAT
91597962 GTTACAGTTATATGGAAAGAG
1 GTTACAGTTATATGGAAAGAG
91597983 GTTACAGTTATATGGAAAGA
1 GTTACAGTTATATGGAAAGA
91598003 CACACTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.27, T:0.29
Consensus pattern (21 bp):
GTTACAGTTATATGGAAAGAG
Found at i:91599050 original size:13 final size:13
Alignment explanation
Indices: 91599034--91599065 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
91599024 TATACGAGCT
*
91599034 TGTGACATGACCG
1 TGTGACACGACCG
91599047 TGTGACACGACCG
1 TGTGACACGACCG
91599060 TGTGAC
1 TGTGAC
91599066 CCTACTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.22
Consensus pattern (13 bp):
TGTGACACGACCG
Found at i:91607374 original size:20 final size:20
Alignment explanation
Indices: 91607329--91607382 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 20
91607319 TTGCACATGG
* *
91607329 CCGTGTGACGAAGGCACACA
1 CCGTGTGAAGCAGGCACACA
91607349 CTCGTGTGAAGCAGG-ACACGA
1 C-CGTGTGAAGCAGGCACAC-A
91607370 CCGTGTGAA-CAGG
1 CCGTGTGAAGCAGG
91607383 TTGTGTAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.13
20 13 0.43
21 13 0.43
ACGTcount: A:0.28, C:0.26, G:0.33, T:0.13
Consensus pattern (20 bp):
CCGTGTGAAGCAGGCACACA
Found at i:91608037 original size:21 final size:20
Alignment explanation
Indices: 91608002--91608041 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
91607992 AAAAAGAAAG
91608002 AAAGTAAAAACAATAGAAATA
1 AAAGTAAAAACAATA-AAATA
* *
91608023 AAAGTAATAATAATAAAAT
1 AAAGTAAAAACAATAAAAT
91608042 TAATAACAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (20 bp):
AAAGTAAAAACAATAAAATA
Found at i:91609799 original size:27 final size:26
Alignment explanation
Indices: 91609768--91609841 Score: 62
Period size: 27 Copynumber: 2.8 Consensus size: 26
91609758 TAGTAAAGTG
91609768 CATAATAAAATAAAATAAAATAAAACA
1 CATAATAAAATAAAATAAAATAAAA-A
* ***
91609795 TATAAGTCCGA-AAAATAAAATAAAAA
1 CATAA-TAAAATAAAATAAAATAAAAA
91609821 CA-AATAACAATAAAAATAAAA
1 CATAATAA-AAT-AAAATAAAA
91609842 GATAGTTTGG
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
24 1 0.03
25 3 0.09
26 2 0.06
27 27 0.77
28 2 0.06
ACGTcount: A:0.72, C:0.08, G:0.03, T:0.18
Consensus pattern (26 bp):
CATAATAAAATAAAATAAAATAAAAA
Found at i:91609834 original size:16 final size:15
Alignment explanation
Indices: 91609807--91609836 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
91609797 TAAGTCCGAA
91609807 AAATAAAATAAAAAC
1 AAATAAAATAAAAAC
91609822 AAATAACAATAAAAA
1 AAATAA-AATAAAAA
91609837 TAAAAGATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.80, C:0.07, G:0.00, T:0.13
Consensus pattern (15 bp):
AAATAAAATAAAAAC
Found at i:91617345 original size:21 final size:20
Alignment explanation
Indices: 91617313--91617357 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
91617303 GTCTTAACAG
*
91617313 AACTGCTGATGTGGCAAGTT
1 AACTGCTAATGTGGCAAGTT
*
91617333 AACTAGCTAATGTGGCCAGTT
1 AACT-GCTAATGTGGCAAGTT
91617354 AACT
1 AACT
91617358 TGCCACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (20 bp):
AACTGCTAATGTGGCAAGTT
Found at i:91617557 original size:73 final size:73
Alignment explanation
Indices: 91617471--91617613 Score: 268
Period size: 73 Copynumber: 2.0 Consensus size: 73
91617461 AGACTGTATG
* *
91617471 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTGTTGAAGAGCATTCTCCATTACGTGTA
1 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTGAAGAGCATTCTCCATTACATGTA
91617536 AAGCAGAC
66 AAGCAGAC
91617544 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTGAAGAGCATTCTCCATTACATGTA
1 TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTGAAGAGCATTCTCCATTACATGTA
91617609 AAGCA
66 AAGCA
91617614 AGCAAAAAGT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 68 1.00
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.31
Consensus pattern (73 bp):
TCTTTGCTCCATGTCTGAATTCGGGGGCTGCTCAGCCTATTGAAGAGCATTCTCCATTACATGTA
AAGCAGAC
Found at i:91618266 original size:3 final size:3
Alignment explanation
Indices: 91618258--91618330 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
91618248 ATTTAATGAC
91618258 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
91618306 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
91618331 TTTAGGGGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:91618398 original size:21 final size:21
Alignment explanation
Indices: 91618372--91618412 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
91618362 CAATGTGGCA
91618372 AGTTAACTAGCCACATCAGCT
1 AGTTAACTAGCCACATCAGCT
*
91618393 AGTTAACTTGCCACATCAGC
1 AGTTAACTAGCCACATCAGC
91618413 GGTTCTGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (21 bp):
AGTTAACTAGCCACATCAGCT
Found at i:91618513 original size:30 final size:31
Alignment explanation
Indices: 91618447--91618517 Score: 83
Period size: 30 Copynumber: 2.3 Consensus size: 31
91618437 ACTGTTATTC
* *
91618447 AGTGACTGTTTTGTCACTTTTTTATAACGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
91618478 AGTGACTGTTTTGTTA-TTTTTCA-AAAGTT
1 AGTGACTGTTTTGTCACTTTTTCATAAAGTT
*
91618507 GGGTGACTGTT
1 -AGTGACTGTT
91618518 GGTGTAATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 5 0.14
30 15 0.43
31 15 0.43
ACGTcount: A:0.20, C:0.10, G:0.21, T:0.49
Consensus pattern (31 bp):
AGTGACTGTTTTGTCACTTTTTCATAAAGTT
Done.